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602713e57b |
@@ -0,0 +1,4 @@
|
||||
/tests
|
||||
/dvc
|
||||
/.github
|
||||
/bin
|
||||
@@ -1 +1,4 @@
|
||||
node: $Format:%H$
|
||||
node-date: $Format:%cI$
|
||||
describe-name: $Format:%(describe:tags=true)$
|
||||
ref-names: $Format:%D$
|
||||
|
||||
@@ -1 +0,0 @@
|
||||
* @iterative/dvc
|
||||
@@ -1,3 +0,0 @@
|
||||
# These are supported funding model platforms
|
||||
|
||||
patreon: DVCorg
|
||||
+1
-1
@@ -1,7 +1,7 @@
|
||||
pull_request_rules:
|
||||
- name: backport patches to 1.11
|
||||
conditions:
|
||||
- base=master
|
||||
- base=main
|
||||
- label=backport-1.11
|
||||
actions:
|
||||
backport:
|
||||
|
||||
@@ -11,13 +11,13 @@ jobs:
|
||||
os: [ubuntu-18.04]
|
||||
steps:
|
||||
- name: Cancel Previous Runs
|
||||
uses: styfle/cancel-workflow-action@0.9.1
|
||||
uses: styfle/cancel-workflow-action@0.10.0
|
||||
with:
|
||||
access_token: ${{ github.token }}
|
||||
- uses: actions/setup-python@v2
|
||||
- uses: actions/setup-python@v4
|
||||
with:
|
||||
python-version: 3.7
|
||||
- uses: iterative/dvc-bench@master
|
||||
python-version: 3.8
|
||||
- uses: iterative/dvc-bench@main
|
||||
with:
|
||||
pytest_options: "-k 'test_init or test_help'"
|
||||
|
||||
|
||||
+57
-117
@@ -2,156 +2,96 @@ name: Build packages
|
||||
on:
|
||||
push:
|
||||
branches:
|
||||
- master
|
||||
- main
|
||||
release:
|
||||
types: [released, prereleased]
|
||||
workflow_dispatch:
|
||||
|
||||
jobs:
|
||||
deb:
|
||||
runs-on: ubuntu-18.04
|
||||
binary:
|
||||
strategy:
|
||||
matrix:
|
||||
include:
|
||||
- {pkg: "deb", os: "ubuntu-18.04", asset: "dvc_${{ github.event.release.tag_name }}_amd64.deb"}
|
||||
- {pkg: "rpm", os: "ubuntu-18.04", asset: "dvc-${{ github.event.release.tag_name }}-1.x86_64.rpm"}
|
||||
- {pkg: "osxpkg", os: "macos-10.15", asset: "dvc-${{ github.event.release.tag_name }}.pkg"}
|
||||
- {pkg: "exe", os: "windows-2019", asset: "dvc-${{ github.event.release.tag_name }}.exe"}
|
||||
|
||||
name: ${{ matrix.pkg }}
|
||||
runs-on: ${{ matrix.os }}
|
||||
steps:
|
||||
- uses: actions/checkout@v2.4.0
|
||||
- uses: actions/checkout@v3
|
||||
with:
|
||||
fetch-depth: 0
|
||||
|
||||
- name: Set up Python 3.9
|
||||
uses: actions/setup-python@v2.2.2
|
||||
uses: actions/setup-python@v4
|
||||
with:
|
||||
python-version: 3.9
|
||||
- name: Set up Ruby 2.4
|
||||
uses: actions/[email protected]
|
||||
cache: pip
|
||||
cache-dependency-path: |
|
||||
setup.cfg
|
||||
scripts/build-requirements.txt
|
||||
|
||||
- name: Set up Ruby 2.6
|
||||
uses: ruby/setup-ruby@v1
|
||||
if: matrix.pkg != 'exe'
|
||||
with:
|
||||
ruby-version: 2.4
|
||||
- name: Install deps
|
||||
run: |
|
||||
pip install .[all]
|
||||
pip install -r scripts/build-requirements.txt
|
||||
gem install --no-document fpm
|
||||
- name: Build deb
|
||||
run: python scripts/build.py deb
|
||||
- name: Publish deb
|
||||
if: github.event_name == 'release'
|
||||
uses: actions/[email protected]
|
||||
env:
|
||||
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
|
||||
with:
|
||||
upload_url: ${{ github.event.release.upload_url }}
|
||||
asset_path: scripts/fpm/dvc_${{ github.event.release.tag_name }}_amd64.deb
|
||||
asset_name: dvc_${{ github.event.release.tag_name }}_amd64.deb
|
||||
asset_content_type: binary/octet-stream
|
||||
rpm:
|
||||
runs-on: ubuntu-18.04
|
||||
steps:
|
||||
- uses: actions/[email protected]
|
||||
with:
|
||||
fetch-depth: 0
|
||||
- name: Set up Python 3.9
|
||||
uses: actions/[email protected]
|
||||
with:
|
||||
python-version: 3.9
|
||||
- name: Set up Ruby 2.4
|
||||
uses: actions/[email protected]
|
||||
with:
|
||||
ruby-version: 2.4
|
||||
- name: Install deps
|
||||
run: |
|
||||
pip install .[all]
|
||||
pip install -r scripts/build-requirements.txt
|
||||
gem install --no-document fpm
|
||||
- name: Build rpm
|
||||
run: python scripts/build.py rpm
|
||||
- name: Publish rpm
|
||||
if: github.event_name == 'release'
|
||||
uses: actions/[email protected]
|
||||
env:
|
||||
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
|
||||
with:
|
||||
upload_url: ${{ github.event.release.upload_url }}
|
||||
asset_path: scripts/fpm/dvc-${{ github.event.release.tag_name }}-1.x86_64.rpm
|
||||
asset_name: dvc-${{ github.event.release.tag_name }}-1.x86_64.rpm
|
||||
asset_content_type: binary/octet-stream
|
||||
osxpkg:
|
||||
runs-on: macos-10.15
|
||||
steps:
|
||||
- uses: actions/[email protected]
|
||||
with:
|
||||
fetch-depth: 0
|
||||
- name: Set up Python 3.9
|
||||
uses: actions/[email protected]
|
||||
with:
|
||||
python-version: 3.9
|
||||
- name: Set up Ruby 2.4
|
||||
uses: actions/[email protected]
|
||||
with:
|
||||
ruby-version: 2.4
|
||||
- name: Install deps
|
||||
run: |
|
||||
# available lxml (webdav dependency) wheels are built with an old
|
||||
# SDK, which breaks osxpkg notarization. Building from scratch
|
||||
# instead.
|
||||
pip install .[all] --no-binary lxml
|
||||
pip install -r scripts/build-requirements.txt
|
||||
gem install --no-document fpm
|
||||
- name: Build
|
||||
run: python scripts/build.py osxpkg
|
||||
- name: Publish
|
||||
if: github.event_name == 'release'
|
||||
uses: actions/[email protected]
|
||||
env:
|
||||
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
|
||||
with:
|
||||
upload_url: ${{ github.event.release.upload_url }}
|
||||
asset_path: scripts/fpm/dvc-${{ github.event.release.tag_name }}.pkg
|
||||
asset_name: dvc-${{ github.event.release.tag_name }}.pkg
|
||||
asset_content_type: binary/octet-stream
|
||||
exe:
|
||||
runs-on: windows-2019
|
||||
steps:
|
||||
- uses: actions/[email protected]
|
||||
with:
|
||||
fetch-depth: 0
|
||||
- name: Set up Python 3.9
|
||||
uses: actions/[email protected]
|
||||
with:
|
||||
python-version: 3.9
|
||||
ruby-version: '2.6'
|
||||
|
||||
- name: Install fpm
|
||||
if: matrix.pkg != 'exe'
|
||||
run: gem install --no-document fpm
|
||||
|
||||
- name: Install deps
|
||||
run: |
|
||||
pip install -U wheel pip setuptools
|
||||
pip install .[all]
|
||||
pip install -r scripts/build-requirements.txt
|
||||
|
||||
- name: Pull images
|
||||
run: |
|
||||
dvc pull
|
||||
- name: Build
|
||||
run: python scripts\build.py exe
|
||||
shell: cmd
|
||||
- name: Publish
|
||||
run: dvc pull
|
||||
|
||||
- name: Build ${{ matrix.pkg }}
|
||||
run: python scripts/build.py ${{ matrix.pkg }}
|
||||
|
||||
- name: Publish ${{ matrix.pkg }}
|
||||
if: github.event_name == 'release'
|
||||
uses: actions/[email protected]
|
||||
env:
|
||||
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
|
||||
uses: actions/[email protected]
|
||||
with:
|
||||
upload_url: ${{ github.event.release.upload_url }}
|
||||
asset_path: scripts/innosetup/dvc-${{ github.event.release.tag_name }}.exe
|
||||
asset_name: dvc-${{ github.event.release.tag_name }}.exe
|
||||
asset_path: scripts/${{ matrix.pkg == 'exe' && 'innosetup' || 'fpm' }}/${{ matrix.asset }}
|
||||
asset_name: ${{ matrix.asset }}
|
||||
asset_content_type: binary/octet-stream
|
||||
|
||||
pip:
|
||||
runs-on: ubuntu-18.04
|
||||
runs-on: ubuntu-20.04
|
||||
steps:
|
||||
- uses: actions/checkout@v2.4.0
|
||||
- uses: actions/checkout@v3
|
||||
with:
|
||||
fetch-depth: 0
|
||||
- name: Set up Python 3.7
|
||||
uses: actions/setup-python@v2.2.2
|
||||
|
||||
- name: Set up Python 3.8
|
||||
uses: actions/setup-python@v4
|
||||
with:
|
||||
python-version: 3.7
|
||||
python-version: 3.8
|
||||
cache: pip
|
||||
cache-dependency-path: setup.cfg
|
||||
|
||||
- name: Install
|
||||
run: pip install ".[all,tests]"
|
||||
run: |
|
||||
pip install -U wheel pip build setuptools
|
||||
pip install ".[all,tests]"
|
||||
|
||||
- name: Build packages
|
||||
run: |
|
||||
pip install -U pip
|
||||
./scripts/build_package.sh
|
||||
|
||||
- name: Publish packages to PyPI
|
||||
if: github.event_name == 'release'
|
||||
uses: pypa/gh-action-pypi-publish@master
|
||||
uses: pypa/gh-action-pypi-publish@release/v1
|
||||
with:
|
||||
user: __token__
|
||||
password: ${{ secrets.PYPI_TOKEN }}
|
||||
|
||||
@@ -17,23 +17,24 @@ jobs:
|
||||
runs-on: ubuntu-latest
|
||||
steps:
|
||||
- name: Cancel Previous Runs
|
||||
uses: styfle/cancel-workflow-action@0.9.1
|
||||
uses: styfle/cancel-workflow-action@0.10.0
|
||||
with:
|
||||
access_token: ${{ github.token }}
|
||||
- uses: actions/checkout@v2.4.0
|
||||
- uses: actions/checkout@v3
|
||||
with:
|
||||
fetch-depth: 0
|
||||
- name: Set up Python 3.8
|
||||
uses: actions/setup-python@v2.2.2
|
||||
uses: actions/setup-python@v4
|
||||
with:
|
||||
python-version: 3.8
|
||||
- name: Install requirements
|
||||
run: |
|
||||
pip install --upgrade pip setuptools wheel
|
||||
pip install collective.checkdocs==0.2
|
||||
pip install ".[dev]" pre-commit
|
||||
- name: Check README
|
||||
run: python setup.py checkdocs
|
||||
- uses: pre-commit/action@v2.0.3
|
||||
- uses: pre-commit/action@v3.0.0
|
||||
tests:
|
||||
timeout-minutes: 45
|
||||
runs-on: ${{ matrix.os }}
|
||||
@@ -41,13 +42,16 @@ jobs:
|
||||
fail-fast: false
|
||||
matrix:
|
||||
os: [ubuntu-20.04, windows-latest, macos-latest]
|
||||
pyv: ["3.7", "3.8", "3.9", "3.10"]
|
||||
pyv: ["3.8", "3.9", "3.10"]
|
||||
include:
|
||||
- {os: ubuntu-latest, pyv: "3.11-dev"}
|
||||
|
||||
steps:
|
||||
- uses: actions/checkout@v2.4.0
|
||||
- uses: actions/checkout@v3
|
||||
with:
|
||||
fetch-depth: 0
|
||||
- name: Set up Python
|
||||
uses: actions/setup-python@v2.2.2
|
||||
uses: actions/setup-python@v4
|
||||
with:
|
||||
python-version: ${{ matrix.pyv }}
|
||||
- name: get pip cache dir
|
||||
@@ -56,7 +60,7 @@ jobs:
|
||||
echo "::set-output name=dir::$(pip cache dir)"
|
||||
- name: set pip cache
|
||||
id: pip-cache
|
||||
uses: actions/cache@v2.1.7
|
||||
uses: actions/cache@v3
|
||||
with:
|
||||
path: ${{ steps.pip-cache-dir.outputs.dir }}
|
||||
key: ${{ runner.os }}-pip-${{ hashFiles('setup.cfg') }}
|
||||
@@ -67,10 +71,8 @@ jobs:
|
||||
run: |
|
||||
pip install --upgrade pip setuptools wheel
|
||||
pip install -e ".[dev]"
|
||||
- name: setup git
|
||||
run: |
|
||||
git config --global user.email "[email protected]"
|
||||
git config --global user.name "DVC Tester"
|
||||
env:
|
||||
AIOHTTP_NO_EXTENSIONS: ${{ matrix.pyv == '3.11-dev' && '1' }}
|
||||
- name: run tests
|
||||
timeout-minutes: 40
|
||||
run: >-
|
||||
@@ -78,12 +80,12 @@ jobs:
|
||||
--cov-report=xml --cov-report=term
|
||||
${{ env.extra_test_args }}
|
||||
- name: upload coverage report
|
||||
uses: codecov/codecov-action@v2.1.0
|
||||
uses: codecov/codecov-action@v3
|
||||
with:
|
||||
file: ./coverage.xml
|
||||
fail_ci_if_error: false
|
||||
notify:
|
||||
if: github.ref == 'refs/heads/master' && failure()
|
||||
if: github.ref == 'refs/heads/main' && failure()
|
||||
needs:
|
||||
- lint
|
||||
- tests
|
||||
@@ -94,6 +96,6 @@ jobs:
|
||||
env:
|
||||
SLACK_WEBHOOK: ${{ secrets.SLACK_WEBHOOK }}
|
||||
SLACK_COLOR: ${{ job.status }}
|
||||
SLACK_MESSAGE: 'CI Failed on master :boom:'
|
||||
SLACK_MESSAGE: 'CI Failed on main :boom:'
|
||||
SLACK_TITLE: CI Status
|
||||
SLACK_USERNAME: DVC-CI
|
||||
|
||||
+13
-3
@@ -1,10 +1,13 @@
|
||||
__pycache__/
|
||||
neatlynx.conf
|
||||
neatlynx/__pycache__
|
||||
.idea
|
||||
/cache
|
||||
*.pyc
|
||||
.env/
|
||||
.env2.7/
|
||||
|
||||
.env*/
|
||||
.venv
|
||||
env/
|
||||
venv/
|
||||
.python-version
|
||||
|
||||
.dvc.conf.lock
|
||||
@@ -26,6 +29,7 @@ innosetup/config.ini
|
||||
|
||||
.coverage
|
||||
.coverage.*
|
||||
coverage.xml
|
||||
|
||||
*.sw?
|
||||
|
||||
@@ -40,3 +44,9 @@ scripts/ci/gcp-creds.json
|
||||
|
||||
*~
|
||||
/dvc/_dvc_version.py
|
||||
|
||||
.mypy_cache/
|
||||
.pytest_cache/
|
||||
.nox/
|
||||
.tox/
|
||||
htmlcov/
|
||||
|
||||
@@ -6,9 +6,9 @@ repos:
|
||||
- id: black
|
||||
language_version: python3
|
||||
repo: https://github.com/ambv/black
|
||||
rev: 21.12b0
|
||||
rev: 22.6.0
|
||||
- repo: https://github.com/pre-commit/pre-commit-hooks
|
||||
rev: v4.0.1
|
||||
rev: v4.3.0
|
||||
hooks:
|
||||
- id: check-toml
|
||||
- id: check-yaml
|
||||
|
||||
+130
-140
@@ -3,97 +3,114 @@
|
||||
`Website <https://dvc.org>`_
|
||||
• `Docs <https://dvc.org/doc>`_
|
||||
• `Blog <http://blog.dataversioncontrol.com>`_
|
||||
• `Twitter <https://twitter.com/DVCorg>`_
|
||||
• `Chat (Community & Support) <https://dvc.org/chat>`_
|
||||
• `Tutorial <https://dvc.org/doc/get-started>`_
|
||||
• `Mailing List <https://sweedom.us10.list-manage.com/subscribe/post?u=a08bf93caae4063c4e6a351f6&id=24c0ecc49a>`_
|
||||
• `Related Technologies <https://dvc.org/doc/user-guide/related-technologies>`_
|
||||
• `How DVC works`_
|
||||
• `VS Code Extension`_
|
||||
• `Installation`_
|
||||
• `Contributing`_
|
||||
• `Community and Support`_
|
||||
|
||||
|CI| |Maintainability| |Coverage| |Donate| |DOI|
|
||||
|CI| |Python Version| |Coverage| |VS Code| |DOI|
|
||||
|
||||
|PyPI| |Packages| |Brew| |Conda| |Choco| |Snap|
|
||||
|
||||
|
|
||||
|
||||
**Data Version Control** or **DVC** is an **open-source** tool for data science and machine
|
||||
learning projects. Key features:
|
||||
**Data Version Control** or **DVC** is a command line tool and `VS Code Extension`_ to help you develop reproducible machine learning projects:
|
||||
|
||||
#. Simple **command line** Git-like experience. Does not require installing and maintaining
|
||||
any databases. Does not depend on any proprietary online services.
|
||||
#. **Version** your data and models.
|
||||
Store them in your cloud storage but keep their version info in your Git repo.
|
||||
|
||||
#. Management and versioning of **datasets** and **machine learning
|
||||
models**. Data can be saved in S3, Google cloud, Azure, Alibaba
|
||||
cloud, SSH server, HDFS, or even local HDD RAID.
|
||||
#. **Iterate** fast with lightweight pipelines.
|
||||
When you make changes, only run the steps impacted by those changes.
|
||||
|
||||
#. Makes projects **reproducible** and **shareable**; helping to answer questions about how
|
||||
a model was built.
|
||||
#. **Track** experiments in your local Git repo (no servers needed).
|
||||
|
||||
#. Helps manage experiments with Git tags/branches and **metrics** tracking.
|
||||
#. **Compare** any data, code, parameters, model, or performance plots.
|
||||
|
||||
**DVC** aims to replace spreadsheet and document sharing tools (such as Excel or Google Docs)
|
||||
frequently used as both knowledge repositories and team ledgers.
|
||||
DVC also replaces both ad-hoc scripts to track, move, and deploy different model versions
|
||||
and ad-hoc data file suffixes and prefixes.
|
||||
|
||||
.. contents:: **Contents**
|
||||
:backlinks: none
|
||||
|
||||
How DVC works
|
||||
=============
|
||||
|
||||
We encourage you to read our `Get Started <https://dvc.org/doc/get-started>`_ guide to better understand what DVC
|
||||
is and how it can fit your scenarios.
|
||||
|
||||
The easiest (but not perfect!) *analogy* to describe it: DVC is Git (or Git-LFS to be precise) & Makefiles
|
||||
made right and tailored specifically for ML and Data Science scenarios.
|
||||
|
||||
#. ``Git/Git-LFS`` part - DVC helps store and share data artifacts and models, connecting them with a Git repository.
|
||||
#. ``Makefile``\ s part - DVC describes how one data or model artifact was built from other data and code.
|
||||
|
||||
DVC usually runs along with Git. Git is used as usual to store and version code (including DVC meta-files). DVC helps
|
||||
to store data and model files seamlessly out of Git, while preserving almost the same user experience as if they
|
||||
were stored in Git itself. To store and share the data cache, DVC supports multiple remotes - any cloud (S3, Azure,
|
||||
Google Cloud, etc) or any on-premise network storage (via SSH, for example).
|
||||
|
||||
|Flowchart|
|
||||
|
||||
The DVC pipelines (computational graph) feature connects code and data together. It is possible to explicitly
|
||||
specify all steps required to produce a model: input dependencies including data, commands to run,
|
||||
and output information to be saved. See the quick start section below or
|
||||
the `Get Started <https://dvc.org/doc/get-started>`_ tutorial to learn more.
|
||||
#. **Share** experiments and automatically reproduce anyone's experiment.
|
||||
|
||||
Quick start
|
||||
===========
|
||||
|
||||
Please read `Get Started <https://dvc.org/doc/get-started>`_ guide for a full version. Common workflow commands include:
|
||||
Please read our `Command Reference <https://dvc.org/doc/command-reference>`_ for a complete list.
|
||||
|
||||
+-----------------------------------+----------------------------------------------------------------------------+
|
||||
| Step | Command |
|
||||
+===================================+============================================================================+
|
||||
| Track data | | ``$ git add train.py`` |
|
||||
| | | ``$ dvc add images.zip`` |
|
||||
+-----------------------------------+----------------------------------------------------------------------------+
|
||||
| Connect code and data by commands | | ``$ dvc run -n prepare -d images.zip -o images/ unzip -q images.zip`` |
|
||||
| | | ``$ dvc run -n train -d images/ -d train.py -o model.p python train.py`` |
|
||||
+-----------------------------------+----------------------------------------------------------------------------+
|
||||
| Make changes and reproduce | | ``$ vi train.py`` |
|
||||
| | | ``$ dvc repro model.p.dvc`` |
|
||||
+-----------------------------------+----------------------------------------------------------------------------+
|
||||
| Share code | | ``$ git add .`` |
|
||||
| | | ``$ git commit -m 'The baseline model'`` |
|
||||
| | | ``$ git push`` |
|
||||
+-----------------------------------+----------------------------------------------------------------------------+
|
||||
| Share data and ML models | | ``$ dvc remote add myremote -d s3://mybucket/image_cnn`` |
|
||||
| | | ``$ dvc push`` |
|
||||
+-----------------------------------+----------------------------------------------------------------------------+
|
||||
A common CLI workflow includes:
|
||||
|
||||
|
||||
+-----------------------------------+----------------------------------------------------------------------------------------------------+
|
||||
| Task | Terminal |
|
||||
+===================================+====================================================================================================+
|
||||
| Track data | | ``$ git add train.py params.yaml`` |
|
||||
| | | ``$ dvc add images/`` |
|
||||
+-----------------------------------+----------------------------------------------------------------------------------------------------+
|
||||
| Connect code and data | | ``$ dvc stage add -n featurize -d images/ -o features/ python featurize.py`` |
|
||||
| | | ``$ dvc stage add -n train -d features/ -d train.py -o model.p -M metrics.json python train.py`` |
|
||||
+-----------------------------------+----------------------------------------------------------------------------------------------------+
|
||||
| Make changes and experiment | | ``$ dvc exp run -n exp-baseline`` |
|
||||
| | | ``$ vi train.py`` |
|
||||
| | | ``$ dvc exp run -n exp-code-change`` |
|
||||
+-----------------------------------+----------------------------------------------------------------------------------------------------+
|
||||
| Compare and select experiments | | ``$ dvc exp show`` |
|
||||
| | | ``$ dvc exp apply exp-baseline`` |
|
||||
+-----------------------------------+----------------------------------------------------------------------------------------------------+
|
||||
| Share code | | ``$ git add .`` |
|
||||
| | | ``$ git commit -m 'The baseline model'`` |
|
||||
| | | ``$ git push`` |
|
||||
+-----------------------------------+----------------------------------------------------------------------------------------------------+
|
||||
| Share data and ML models | | ``$ dvc remote add myremote -d s3://mybucket/image_cnn`` |
|
||||
| | | ``$ dvc push`` |
|
||||
+-----------------------------------+----------------------------------------------------------------------------------------------------+
|
||||
|
||||
How DVC works
|
||||
=============
|
||||
|
||||
We encourage you to read our `Get Started
|
||||
<https://dvc.org/doc/get-started>`_ docs to better understand what DVC
|
||||
does and how it can fit your scenarios.
|
||||
|
||||
The closest *analogies* to describe the main DVC features are these:
|
||||
|
||||
#. **Git for data**: Store and share data artifacts (like Git-LFS but without a server) and models, connecting them with a Git repository. Data management meets GitOps!
|
||||
#. **Makefiles** for ML: Describes how data or model artifacts are built from other data and code in a standard format. Now you can version your data pipelines with Git.
|
||||
#. Local **experiment tracking**: Turn your machine into an ML experiment management platform, and collaborate with others using existing Git hosting (Github, Gitlab, etc.).
|
||||
|
||||
Git is employed as usual to store and version code (including DVC meta-files as placeholders for data).
|
||||
DVC `stores data and model files <https://dvc.org/doc/start/data-management>`_ seamlessly in a cache outside of Git, while preserving almost the same user experience as if they were in the repo.
|
||||
To share and back up the *data cache*, DVC supports multiple remote storage platforms - any cloud (S3, Azure, Google Cloud, etc.) or on-premise network storage (via SSH, for example).
|
||||
|
||||
|Flowchart|
|
||||
|
||||
`DVC pipelines <https://dvc.org/doc/start/data-management/pipelines>`_ (computational graphs) connect code and data together.
|
||||
They specify all steps required to produce a model: input dependencies including code, data, commands to run; and output information to be saved.
|
||||
|
||||
Last but not least, `DVC Experiment Versioning <https://dvc.org/doc/start/experiments>`_ lets you prepare and run a large number of experiments.
|
||||
Their results can be filtered and compared based on hyperparameters and metrics, and visualized with multiple plots.
|
||||
|
||||
.. _`VS Code Extension`:
|
||||
|
||||
Visual Studio Code Extension
|
||||
============================
|
||||
|
||||
|VS Code|
|
||||
|
||||
To use DVC as a GUI right from your VS Code IDE, install the `DVC Extension <https://marketplace.visualstudio.com/items?itemName=Iterative.dvc>`_ from the Marketplace.
|
||||
It currently features experiment tracking and data management, and more features (data pipeline support, etc.) are coming soon!
|
||||
|
||||
|VS Code Extension Overview|
|
||||
|
||||
Note: You'll have to install core DVC on your system separately (as detailed
|
||||
below). The Extension will guide you if needed.
|
||||
|
||||
Installation
|
||||
============
|
||||
|
||||
There are four options to install DVC: ``pip``, Homebrew, Conda (Anaconda) or an OS-specific package.
|
||||
There are several ways to install DVC: in VS Code; using ``snap``, ``choco``, ``brew``, ``conda``, ``pip``; or with an OS-specific package.
|
||||
Full instructions are `available here <https://dvc.org/doc/get-started/install>`_.
|
||||
|
||||
Snap (Snapcraft/Linux)
|
||||
----------------------
|
||||
Snapcraft (Linux)
|
||||
-----------------
|
||||
|
||||
|Snap|
|
||||
|
||||
@@ -102,11 +119,10 @@ Snap (Snapcraft/Linux)
|
||||
snap install dvc --classic
|
||||
|
||||
This corresponds to the latest tagged release.
|
||||
Add ``--beta`` for the latest tagged release candidate,
|
||||
or ``--edge`` for the latest ``master`` version.
|
||||
Add ``--beta`` for the latest tagged release candidate, or ``--edge`` for the latest ``main`` version.
|
||||
|
||||
Choco (Chocolatey/Windows)
|
||||
--------------------------
|
||||
Chocolatey (Windows)
|
||||
--------------------
|
||||
|
||||
|Choco|
|
||||
|
||||
@@ -114,8 +130,8 @@ Choco (Chocolatey/Windows)
|
||||
|
||||
choco install dvc
|
||||
|
||||
Brew (Homebrew/Mac OS)
|
||||
----------------------
|
||||
Brew (mac OS)
|
||||
-------------
|
||||
|
||||
|Brew|
|
||||
|
||||
@@ -123,8 +139,8 @@ Brew (Homebrew/Mac OS)
|
||||
|
||||
brew install dvc
|
||||
|
||||
Conda (Anaconda)
|
||||
----------------
|
||||
Anaconda (Any platform)
|
||||
-----------------------
|
||||
|
||||
|Conda|
|
||||
|
||||
@@ -133,11 +149,10 @@ Conda (Anaconda)
|
||||
conda install -c conda-forge mamba # installs much faster than conda
|
||||
mamba install -c conda-forge dvc
|
||||
|
||||
Depending on the remote storage type you plan to use to keep and share your data, you might need to
|
||||
install optional dependencies: `dvc-s3`, `dvc-azure`, `dvc-gdrive`, `dvc-gs`, `dvc-oss`, `dvc-ssh`.
|
||||
Depending on the remote storage type you plan to use to keep and share your data, you might need to install optional dependencies: `dvc-s3`, `dvc-azure`, `dvc-gdrive`, `dvc-gs`, `dvc-oss`, `dvc-ssh`.
|
||||
|
||||
pip (PyPI)
|
||||
----------
|
||||
PyPI (Python)
|
||||
-------------
|
||||
|
||||
|PyPI|
|
||||
|
||||
@@ -145,10 +160,8 @@ pip (PyPI)
|
||||
|
||||
pip install dvc
|
||||
|
||||
Depending on the remote storage type you plan to use to keep and share your data, you might need to specify
|
||||
one of the optional dependencies: ``s3``, ``gs``, ``azure``, ``oss``, ``ssh``. Or ``all`` to include them all.
|
||||
The command should look like this: ``pip install dvc[s3]`` (in this case AWS S3 dependencies such as ``boto3``
|
||||
will be installed automatically).
|
||||
Depending on the remote storage type you plan to use to keep and share your data, you might need to specify one of the optional dependencies: ``s3``, ``gs``, ``azure``, ``oss``, ``ssh``. Or ``all`` to include them all.
|
||||
The command should look like this: ``pip install 'dvc[s3]'`` (in this case AWS S3 dependencies such as ``boto3`` will be installed automatically).
|
||||
|
||||
To install the development version, run:
|
||||
|
||||
@@ -156,88 +169,58 @@ To install the development version, run:
|
||||
|
||||
pip install git+git://github.com/iterative/dvc
|
||||
|
||||
Package
|
||||
-------
|
||||
Package (Platform-specific)
|
||||
---------------------------
|
||||
|
||||
|Packages|
|
||||
|
||||
Self-contained packages for Linux, Windows, and Mac are available. The latest version of the packages
|
||||
can be found on the GitHub `releases page <https://github.com/iterative/dvc/releases>`_.
|
||||
Self-contained packages for Linux, Windows, and Mac are available.
|
||||
The latest version of the packages can be found on the GitHub `releases page <https://github.com/iterative/dvc/releases>`_.
|
||||
|
||||
Ubuntu / Debian (deb)
|
||||
^^^^^^^^^^^^^^^^^^^^^
|
||||
.. code-block:: bash
|
||||
|
||||
sudo wget https://dvc.org/deb/dvc.list -O /etc/apt/sources.list.d/dvc.list
|
||||
sudo apt-get update
|
||||
sudo apt-get install dvc
|
||||
wget -qO - https://dvc.org/deb/iterative.asc | sudo apt-key add -
|
||||
sudo apt update
|
||||
sudo apt install dvc
|
||||
|
||||
Fedora / CentOS (rpm)
|
||||
^^^^^^^^^^^^^^^^^^^^^
|
||||
.. code-block:: bash
|
||||
|
||||
sudo wget https://dvc.org/rpm/dvc.repo -O /etc/yum.repos.d/dvc.repo
|
||||
sudo rpm --import https://dvc.org/rpm/iterative.asc
|
||||
sudo yum update
|
||||
sudo yum install dvc
|
||||
|
||||
Comparison to related technologies
|
||||
==================================
|
||||
|
||||
#. Data Engineering tools such as `AirFlow <https://airflow.apache.org/>`,
|
||||
`Luigi <https://github.com/spotify/luigi>`, and others - in DVC data,
|
||||
model and ML pipelines represent a single ML project focused on data
|
||||
scientists' experience. Data engineering tools orchestrate multiple data
|
||||
projects and focus on efficient execution. A DVC project can be used from
|
||||
existing data pipelines as a single execution step.
|
||||
|
||||
#. `Git-annex <https://git-annex.branchable.com/>`_ - DVC uses the idea of storing the content of large files (which should
|
||||
not be in a Git repository) in a local key-value store, and uses file hardlinks/symlinks instead of
|
||||
copying/duplicating files.
|
||||
|
||||
#. `Git-LFS <https://git-lfs.github.com/>`_ - DVC is compatible with many
|
||||
remote storage services (S3, Google Cloud, Azure, SSH, etc). DVC also
|
||||
uses reflinks or hardlinks to avoid copy operations on checkouts; thus
|
||||
handling large data files much more efficiently.
|
||||
|
||||
#. Makefile (and analogues including ad-hoc scripts) - DVC tracks
|
||||
dependencies (in a directed acyclic graph).
|
||||
|
||||
#. `Workflow Management Systems <https://en.wikipedia.org/wiki/Workflow_management_system>`_ - DVC is a workflow
|
||||
management system designed specifically to manage machine learning experiments. DVC is built on top of Git.
|
||||
|
||||
#. `DAGsHub <https://dagshub.com/>`_ - online service to host DVC
|
||||
projects. It provides a useful UI around DVC repositories and integrates
|
||||
other tools.
|
||||
|
||||
#. `DVC Studio <https://studio.iterative.ai/>`_ - official online
|
||||
platform for DVC projects. It can be used to manage data and models, run
|
||||
and track experiments, and visualize and share results. Also, it
|
||||
integrates with `CML (CI/CD for ML) <https://cml.dev/>` for training
|
||||
models in the cloud or Kubernetes.
|
||||
|
||||
|
||||
Contributing
|
||||
============
|
||||
|
||||
|Maintainability| |Donate|
|
||||
|Maintainability|
|
||||
|
||||
Contributions are welcome! Please see our `Contributing Guide <https://dvc.org/doc/user-guide/contributing/core>`_ for more
|
||||
details. Thanks to all our contributors!
|
||||
Contributions are welcome!
|
||||
Please see our `Contributing Guide <https://dvc.org/doc/user-guide/contributing/core>`_ for more details.
|
||||
Thanks to all our contributors!
|
||||
|
||||
|Contribs|
|
||||
|
||||
Mailing List
|
||||
============
|
||||
Community and Support
|
||||
=====================
|
||||
|
||||
Want to stay up to date? Want to help improve DVC by participating in our occasional polls? Subscribe to our `mailing list <https://sweedom.us10.list-manage.com/subscribe/post?u=a08bf93caae4063c4e6a351f6&id=24c0ecc49a>`_. No spam, really low traffic.
|
||||
* `Twitter <https://twitter.com/DVCorg>`_
|
||||
* `Forum <https://discuss.dvc.org/>`_
|
||||
* `Discord Chat <https://dvc.org/chat>`_
|
||||
* `Email <mailto:[email protected]>`_
|
||||
* `Mailing List <https://sweedom.us10.list-manage.com/subscribe/post?u=a08bf93caae4063c4e6a351f6&id=24c0ecc49a>`_
|
||||
|
||||
Copyright
|
||||
=========
|
||||
|
||||
This project is distributed under the Apache license version 2.0 (see the LICENSE file in the project root).
|
||||
|
||||
By submitting a pull request to this project, you agree to license your contribution under the Apache license version
|
||||
2.0 to this project.
|
||||
By submitting a pull request to this project, you agree to license your contribution under the Apache license version 2.0 to this project.
|
||||
|
||||
Citation
|
||||
========
|
||||
@@ -254,7 +237,10 @@ Barrak, A., Eghan, E.E. and Adams, B. `On the Co-evolution of ML Pipelines and S
|
||||
:target: https://dvc.org
|
||||
:alt: DVC logo
|
||||
|
||||
.. |CI| image:: https://github.com/iterative/dvc/workflows/Tests/badge.svg?branch=master
|
||||
.. |VS Code Extension Overview| image:: https://raw.githubusercontent.com/iterative/vscode-dvc/main/extension/docs/overview.gif
|
||||
:alt: DVC Extension for VS Code
|
||||
|
||||
.. |CI| image:: https://github.com/iterative/dvc/workflows/Tests/badge.svg?branch=main
|
||||
:target: https://github.com/iterative/dvc/actions
|
||||
:alt: GHA Tests
|
||||
|
||||
@@ -262,14 +248,14 @@ Barrak, A., Eghan, E.E. and Adams, B. `On the Co-evolution of ML Pipelines and S
|
||||
:target: https://codeclimate.com/github/iterative/dvc
|
||||
:alt: Code Climate
|
||||
|
||||
.. |Coverage| image:: https://codecov.io/gh/iterative/dvc/branch/master/graph/badge.svg
|
||||
.. |Python Version| image:: https://img.shields.io/pypi/pyversions/dvc
|
||||
:target: https://pypi.org/project/dvc
|
||||
:alt: Python Version
|
||||
|
||||
.. |Coverage| image:: https://codecov.io/gh/iterative/dvc/branch/main/graph/badge.svg
|
||||
:target: https://codecov.io/gh/iterative/dvc
|
||||
:alt: Codecov
|
||||
|
||||
.. |Donate| image:: https://img.shields.io/badge/patreon-donate-green.svg?logo=patreon
|
||||
:target: https://www.patreon.com/DVCorg/overview
|
||||
:alt: Donate
|
||||
|
||||
.. |Snap| image:: https://img.shields.io/badge/snap-install-82BEA0.svg?logo=snapcraft
|
||||
:target: https://snapcraft.io/dvc
|
||||
:alt: Snapcraft
|
||||
@@ -305,3 +291,7 @@ Barrak, A., Eghan, E.E. and Adams, B. `On the Co-evolution of ML Pipelines and S
|
||||
.. |Contribs| image:: https://contrib.rocks/image?repo=iterative/dvc
|
||||
:target: https://github.com/iterative/dvc/graphs/contributors
|
||||
:alt: Contributors
|
||||
|
||||
.. |VS Code| image:: https://vsmarketplacebadge.apphb.com/version/Iterative.dvc.svg
|
||||
:target: https://marketplace.visualstudio.com/items?itemName=Iterative.dvc
|
||||
:alt: VS Code Extension
|
||||
|
||||
+1
-1
@@ -1,7 +1,7 @@
|
||||
"""Main entry point for DVC command line tool."""
|
||||
import sys
|
||||
|
||||
from dvc.main import main
|
||||
from dvc.cli import main
|
||||
|
||||
if __name__ == "__main__":
|
||||
sys.exit(main(sys.argv[1:]))
|
||||
|
||||
+34
-2
@@ -1,10 +1,32 @@
|
||||
from contextlib import ExitStack, contextmanager
|
||||
from datetime import datetime
|
||||
from typing import TYPE_CHECKING, Callable, Union
|
||||
|
||||
if TYPE_CHECKING:
|
||||
from argparse import Namespace
|
||||
|
||||
|
||||
@contextmanager
|
||||
def viztracer_profile(
|
||||
path: Union[Callable[[], str], str],
|
||||
max_stack_depth: int = -1,
|
||||
):
|
||||
try:
|
||||
import viztracer # pylint: disable=import-error
|
||||
except ImportError:
|
||||
print("Failed to run profiler, viztracer is not installed")
|
||||
yield
|
||||
return
|
||||
|
||||
tracer = viztracer.VizTracer(max_stack_depth=max_stack_depth)
|
||||
|
||||
tracer.start()
|
||||
yield
|
||||
tracer.stop()
|
||||
|
||||
tracer.save(path() if callable(path) else path)
|
||||
|
||||
|
||||
@contextmanager
|
||||
def yappi_profile(
|
||||
path: Union[Callable[[], str], str] = None, wall_clock: bool = True
|
||||
@@ -100,12 +122,18 @@ def debugtools(args: "Namespace" = None, **kwargs):
|
||||
if kw.get("instrument") or kw.get("instrument_open"):
|
||||
stack.enter_context(instrument(kw.get("instrument_open", False)))
|
||||
if kw.get("yappi"):
|
||||
from datetime import datetime
|
||||
|
||||
output = "callgrind.dvc-{0:%Y%m%d}_{0:%H%M%S}.out"
|
||||
stack.enter_context(
|
||||
yappi_profile(path=lambda: output.format(datetime.now()))
|
||||
)
|
||||
if kw.get("viztracer") or kw.get("viztracer_depth"):
|
||||
output = "viztracer.dvc-{0:%Y%m%d}_{0:%H%M%S}.json"
|
||||
stack.enter_context(
|
||||
viztracer_profile(
|
||||
path=lambda: output.format(datetime.now()),
|
||||
max_stack_depth=kw.get("viztracer_depth") or -1,
|
||||
)
|
||||
)
|
||||
yield
|
||||
|
||||
|
||||
@@ -118,6 +146,10 @@ def add_debugging_flags(parser):
|
||||
parser.add_argument(
|
||||
"--yappi", action="store_true", default=False, help=SUPPRESS
|
||||
)
|
||||
parser.add_argument(
|
||||
"--viztracer", action="store_true", default=False, help=SUPPRESS
|
||||
)
|
||||
parser.add_argument("--viztracer-depth", type=int, help=SUPPRESS)
|
||||
parser.add_argument("--cprofile-dump", help=SUPPRESS)
|
||||
parser.add_argument(
|
||||
"--pdb", action="store_true", default=False, help=SUPPRESS
|
||||
|
||||
+2
-2
@@ -50,7 +50,7 @@ def is_enabled():
|
||||
Config(validate=False).get("core", {}).get("analytics", "true")
|
||||
)
|
||||
|
||||
logger.debug("Analytics is {}abled.".format("en" if enabled else "dis"))
|
||||
logger.debug("Analytics is %sabled.", "en" if enabled else "dis")
|
||||
|
||||
return enabled
|
||||
|
||||
@@ -187,4 +187,4 @@ def _find_or_create_user_id():
|
||||
return user_id
|
||||
|
||||
except LockError:
|
||||
logger.debug(f"Failed to acquire '{lockfile}'")
|
||||
logger.debug("Failed to acquire '%s'", lockfile)
|
||||
|
||||
@@ -0,0 +1,35 @@
|
||||
from dataclasses import asdict, dataclass, field, fields
|
||||
from typing import Any, ClassVar, Dict, List, Optional
|
||||
|
||||
from funcy import compact
|
||||
|
||||
|
||||
@dataclass
|
||||
class Annotation:
|
||||
PARAM_DESC: ClassVar[str] = "desc"
|
||||
PARAM_TYPE: ClassVar[str] = "type"
|
||||
PARAM_LABELS: ClassVar[str] = "labels"
|
||||
PARAM_META: ClassVar[str] = "meta"
|
||||
|
||||
desc: Optional[str] = None
|
||||
type: Optional[str] = None
|
||||
labels: List[str] = field(default_factory=list)
|
||||
meta: Dict[str, Any] = field(default_factory=dict)
|
||||
|
||||
def update(self, **kwargs) -> "Annotation":
|
||||
for attr, value in kwargs.items():
|
||||
if value and hasattr(self, attr):
|
||||
setattr(self, attr, value)
|
||||
return self
|
||||
|
||||
def to_dict(self) -> Dict[str, str]:
|
||||
return compact(asdict(self))
|
||||
|
||||
|
||||
ANNOTATION_FIELDS = [field.name for field in fields(Annotation)]
|
||||
ANNOTATION_SCHEMA = {
|
||||
Annotation.PARAM_DESC: str,
|
||||
Annotation.PARAM_TYPE: str,
|
||||
Annotation.PARAM_LABELS: [str],
|
||||
Annotation.PARAM_META: object,
|
||||
}
|
||||
-122
@@ -1,122 +0,0 @@
|
||||
import os
|
||||
from contextlib import _GeneratorContextManager as GCM
|
||||
|
||||
from funcy import reraise
|
||||
|
||||
from dvc.exceptions import OutputNotFoundError, PathMissingError
|
||||
from dvc.repo import Repo
|
||||
|
||||
|
||||
def get_url(path, repo=None, rev=None, remote=None):
|
||||
"""
|
||||
Returns the URL to the storage location of a data file or directory tracked
|
||||
in a DVC repo. For Git repos, HEAD is used unless a rev argument is
|
||||
supplied. The default remote is tried unless a remote argument is supplied.
|
||||
|
||||
Raises OutputNotFoundError if the file is not tracked by DVC.
|
||||
|
||||
NOTE: This function does not check for the actual existence of the file or
|
||||
directory in the remote storage.
|
||||
"""
|
||||
with Repo.open(repo, rev=rev, subrepos=True, uninitialized=True) as _repo:
|
||||
fs_path = _repo.fs.path.join(_repo.root_dir, path)
|
||||
with reraise(FileNotFoundError, PathMissingError(path, repo)):
|
||||
metadata = _repo.repo_fs.metadata(fs_path)
|
||||
|
||||
if not metadata.is_dvc:
|
||||
raise OutputNotFoundError(path, repo)
|
||||
|
||||
cloud = metadata.repo.cloud
|
||||
md5 = metadata.repo.dvcfs.info(fs_path)["md5"]
|
||||
return cloud.get_url_for(remote, checksum=md5)
|
||||
|
||||
|
||||
def open( # noqa, pylint: disable=redefined-builtin
|
||||
path, repo=None, rev=None, remote=None, mode="r", encoding=None
|
||||
):
|
||||
"""
|
||||
Open file in the supplied path tracked in a repo (both DVC projects and
|
||||
plain Git repos are supported). For Git repos, HEAD is used unless a rev
|
||||
argument is supplied. The default remote is tried unless a remote argument
|
||||
is supplied. It may only be used as a context manager:
|
||||
|
||||
with dvc.api.open(
|
||||
'path/to/file',
|
||||
repo='https://example.com/url/to/repo'
|
||||
) as fd:
|
||||
# ... Handle file object fd
|
||||
"""
|
||||
args = (path,)
|
||||
kwargs = {
|
||||
"repo": repo,
|
||||
"remote": remote,
|
||||
"rev": rev,
|
||||
"mode": mode,
|
||||
"encoding": encoding,
|
||||
}
|
||||
return _OpenContextManager(_open, args, kwargs)
|
||||
|
||||
|
||||
class _OpenContextManager(GCM):
|
||||
def __init__(
|
||||
self, func, args, kwds
|
||||
): # pylint: disable=super-init-not-called
|
||||
self.gen = func(*args, **kwds)
|
||||
self.func, self.args, self.kwds = func, args, kwds
|
||||
|
||||
def __getattr__(self, name):
|
||||
raise AttributeError(
|
||||
"dvc.api.open() should be used in a with statement."
|
||||
)
|
||||
|
||||
|
||||
def _open(path, repo=None, rev=None, remote=None, mode="r", encoding=None):
|
||||
with Repo.open(repo, rev=rev, subrepos=True, uninitialized=True) as _repo:
|
||||
with _repo.open_by_relpath(
|
||||
path, remote=remote, mode=mode, encoding=encoding
|
||||
) as fd:
|
||||
yield fd
|
||||
|
||||
|
||||
def read(path, repo=None, rev=None, remote=None, mode="r", encoding=None):
|
||||
"""
|
||||
Returns the contents of a tracked file (by DVC or Git). For Git repos, HEAD
|
||||
is used unless a rev argument is supplied. The default remote is tried
|
||||
unless a remote argument is supplied.
|
||||
"""
|
||||
with open(
|
||||
path, repo=repo, rev=rev, remote=remote, mode=mode, encoding=encoding
|
||||
) as fd:
|
||||
return fd.read()
|
||||
|
||||
|
||||
def make_checkpoint():
|
||||
"""
|
||||
Signal DVC to create a checkpoint experiment.
|
||||
|
||||
If the current process is being run from DVC, this function will block
|
||||
until DVC has finished creating the checkpoint. Otherwise, this function
|
||||
will return immediately.
|
||||
"""
|
||||
import builtins
|
||||
from time import sleep
|
||||
|
||||
from dvc.env import DVC_CHECKPOINT, DVC_ROOT
|
||||
from dvc.stage.monitor import CheckpointTask
|
||||
|
||||
if os.getenv(DVC_CHECKPOINT) is None:
|
||||
return
|
||||
|
||||
root_dir = os.getenv(DVC_ROOT, Repo.find_root())
|
||||
signal_file = os.path.join(
|
||||
root_dir, Repo.DVC_DIR, "tmp", CheckpointTask.SIGNAL_FILE
|
||||
)
|
||||
|
||||
with builtins.open(signal_file, "w", encoding="utf-8") as fobj:
|
||||
# NOTE: force flushing/writing empty file to disk, otherwise when
|
||||
# run in certain contexts (pytest) file may not actually be written
|
||||
fobj.write("")
|
||||
fobj.flush()
|
||||
os.fsync(fobj.fileno())
|
||||
while os.path.exists(signal_file):
|
||||
sleep(0.1)
|
||||
@@ -0,0 +1,9 @@
|
||||
from .data import ( # noqa, pylint: disable=redefined-builtin
|
||||
get_url,
|
||||
open,
|
||||
read,
|
||||
)
|
||||
from .experiments import make_checkpoint
|
||||
from .params import params_show
|
||||
|
||||
__all__ = ["get_url", "make_checkpoint", "open", "params_show", "read"]
|
||||
+213
@@ -0,0 +1,213 @@
|
||||
from contextlib import _GeneratorContextManager as GCM
|
||||
from typing import Optional
|
||||
|
||||
from funcy import reraise
|
||||
|
||||
from dvc.exceptions import OutputNotFoundError, PathMissingError
|
||||
from dvc.repo import Repo
|
||||
|
||||
|
||||
def get_url(path, repo=None, rev=None, remote=None):
|
||||
"""
|
||||
Returns the URL to the storage location of a data file or directory tracked
|
||||
in a DVC repo. For Git repos, HEAD is used unless a rev argument is
|
||||
supplied. The default remote is tried unless a remote argument is supplied.
|
||||
|
||||
Raises OutputNotFoundError if the file is not tracked by DVC.
|
||||
|
||||
NOTE: This function does not check for the actual existence of the file or
|
||||
directory in the remote storage.
|
||||
"""
|
||||
with Repo.open(repo, rev=rev, subrepos=True, uninitialized=True) as _repo:
|
||||
fs_path = _repo.dvcfs.from_os_path(path)
|
||||
with reraise(FileNotFoundError, PathMissingError(path, repo)):
|
||||
info = _repo.dvcfs.info(fs_path)
|
||||
|
||||
dvc_info = info.get("dvc_info")
|
||||
if not dvc_info:
|
||||
raise OutputNotFoundError(path, repo)
|
||||
|
||||
dvc_repo = info["repo"]
|
||||
md5 = dvc_info["md5"]
|
||||
|
||||
return dvc_repo.cloud.get_url_for(remote, checksum=md5)
|
||||
|
||||
|
||||
class _OpenContextManager(GCM):
|
||||
def __init__(
|
||||
self, func, args, kwds
|
||||
): # pylint: disable=super-init-not-called
|
||||
self.gen = func(*args, **kwds)
|
||||
self.func, self.args, self.kwds = func, args, kwds
|
||||
|
||||
def __getattr__(self, name):
|
||||
raise AttributeError(
|
||||
"dvc.api.open() should be used in a with statement."
|
||||
)
|
||||
|
||||
|
||||
def open( # noqa, pylint: disable=redefined-builtin
|
||||
path: str,
|
||||
repo: Optional[str] = None,
|
||||
rev: Optional[str] = None,
|
||||
remote: Optional[str] = None,
|
||||
mode: str = "r",
|
||||
encoding: Optional[str] = None,
|
||||
):
|
||||
"""
|
||||
Opens a file tracked in a DVC project.
|
||||
|
||||
This function may only be used as a context manager (using the `with`
|
||||
keyword, as shown in the examples).
|
||||
|
||||
This function makes a direct connection to the remote storage, so the file
|
||||
contents can be streamed. Your code can process the data buffer as it's
|
||||
streamed, which optimizes memory usage.
|
||||
|
||||
Note:
|
||||
Use dvc.api.read() to load the complete file contents
|
||||
in a single function call, no context manager involved.
|
||||
Neither function utilizes disc space.
|
||||
|
||||
Args:
|
||||
path (str): location and file name of the target to open,
|
||||
relative to the root of `repo`.
|
||||
repo (str, optional): location of the DVC project or Git Repo.
|
||||
Defaults to the current DVC project (found by walking up from the
|
||||
current working directory tree).
|
||||
It can be a URL or a file system path.
|
||||
Both HTTP and SSH protocols are supported for online Git repos
|
||||
(e.g. [user@]server:project.git).
|
||||
rev (str, optional): Any `Git revision`_ such as a branch or tag name,
|
||||
a commit hash or a dvc experiment name.
|
||||
Defaults to HEAD.
|
||||
If `repo` is not a Git repo, this option is ignored.
|
||||
remote (str, optional): Name of the `DVC remote`_ used to form the
|
||||
returned URL string.
|
||||
Defaults to the `default remote`_ of `repo`.
|
||||
For local projects, the cache is tried before the default remote.
|
||||
mode (str, optional): Specifies the mode in which the file is opened.
|
||||
Defaults to "r" (read).
|
||||
Mirrors the namesake parameter in builtin `open()`_.
|
||||
Only reading `mode` is supported.
|
||||
encoding(str, optional): `Codec`_ used to decode the file contents.
|
||||
Defaults to None.
|
||||
This should only be used in text mode.
|
||||
Mirrors the namesake parameter in builtin `open()`_.
|
||||
|
||||
Returns:
|
||||
_OpenContextManager: A context manager that generatse a corresponding
|
||||
`file object`_.
|
||||
The exact type of file object depends on the mode used.
|
||||
For more details, please refer to Python's `open()`_ built-in,
|
||||
which is used under the hood.
|
||||
|
||||
Raises:
|
||||
AttributeError: If this method is not used as a context manager.
|
||||
ValueError: If non-read `mode` is used.
|
||||
|
||||
Examples:
|
||||
|
||||
- Use data or models from a DVC repository.
|
||||
|
||||
Any file tracked in a DVC project (and stored remotely) can be
|
||||
processed directly in your Python code with this API.
|
||||
For example, an XML file tracked in a public DVC repo on GitHub can be
|
||||
processed like this:
|
||||
|
||||
>>> from xml.sax import parse
|
||||
>>> import dvc.api
|
||||
>>> from mymodule import mySAXHandler
|
||||
|
||||
>>> with dvc.api.open(
|
||||
... 'get-started/data.xml',
|
||||
... repo='https://github.com/iterative/dataset-registry'
|
||||
... ) as fd:
|
||||
... parse(fd, mySAXHandler)
|
||||
|
||||
We use a SAX XML parser here because dvc.api.open() is able to stream
|
||||
the data from remote storage.
|
||||
The mySAXHandler object should handle the event-driven parsing of the
|
||||
document in this case.
|
||||
This increases the performance of the code (minimizing memory usage),
|
||||
and is typically faster than loading the whole data into memory.
|
||||
|
||||
- Accessing private repos
|
||||
|
||||
This is just a matter of using the right repo argument, for example an
|
||||
SSH URL (requires that the credentials are configured locally):
|
||||
|
||||
>>> import dvc.api
|
||||
|
||||
>>> with dvc.api.open(
|
||||
... 'features.dat',
|
||||
... repo='[email protected]:path/to/repo.git'
|
||||
... ) as fd:
|
||||
... # ... Process 'features'
|
||||
... pass
|
||||
|
||||
- Use different versions of data
|
||||
|
||||
Any git revision (see `rev`) can be accessed programmatically.
|
||||
For example, if your DVC repo has tagged releases of a CSV dataset:
|
||||
|
||||
>>> import csv
|
||||
>>> import dvc.api
|
||||
>>> with dvc.api.open(
|
||||
... 'clean.csv',
|
||||
... rev='v1.1.0'
|
||||
... ) as fd:
|
||||
... reader = csv.reader(fd)
|
||||
... # ... Process 'clean' data from version 1.1.0
|
||||
|
||||
.. _Git revision:
|
||||
https://git-scm.com/docs/revisions
|
||||
|
||||
.. _DVC remote:
|
||||
https://dvc.org/doc/command-reference/remote
|
||||
|
||||
.. _default remote:
|
||||
https://dvc.org/doc/command-reference/remote/default
|
||||
|
||||
.. _open():
|
||||
https://docs.python.org/3/library/functions.html#open
|
||||
|
||||
.. _Codec:
|
||||
https://docs.python.org/3/library/codecs.html#standard-encodings
|
||||
|
||||
.. _file object:
|
||||
https://docs.python.org/3/glossary.html#term-file-object
|
||||
|
||||
"""
|
||||
if "r" not in mode:
|
||||
raise ValueError("Only reading `mode` is supported.")
|
||||
|
||||
args = (path,)
|
||||
kwargs = {
|
||||
"repo": repo,
|
||||
"remote": remote,
|
||||
"rev": rev,
|
||||
"mode": mode,
|
||||
"encoding": encoding,
|
||||
}
|
||||
return _OpenContextManager(_open, args, kwargs)
|
||||
|
||||
|
||||
def _open(path, repo=None, rev=None, remote=None, mode="r", encoding=None):
|
||||
with Repo.open(repo, rev=rev, subrepos=True, uninitialized=True) as _repo:
|
||||
with _repo.open_by_relpath(
|
||||
path, remote=remote, mode=mode, encoding=encoding
|
||||
) as fd:
|
||||
yield fd
|
||||
|
||||
|
||||
def read(path, repo=None, rev=None, remote=None, mode="r", encoding=None):
|
||||
"""
|
||||
Returns the contents of a tracked file (by DVC or Git). For Git repos, HEAD
|
||||
is used unless a rev argument is supplied. The default remote is tried
|
||||
unless a remote argument is supplied.
|
||||
"""
|
||||
with open(
|
||||
path, repo=repo, rev=rev, remote=remote, mode=mode, encoding=encoding
|
||||
) as fd:
|
||||
return fd.read()
|
||||
@@ -0,0 +1,33 @@
|
||||
import builtins
|
||||
import os
|
||||
from time import sleep
|
||||
|
||||
from dvc.env import DVC_CHECKPOINT, DVC_ROOT
|
||||
from dvc.repo import Repo
|
||||
from dvc.stage.monitor import CheckpointTask
|
||||
|
||||
|
||||
def make_checkpoint():
|
||||
"""
|
||||
Signal DVC to create a checkpoint experiment.
|
||||
|
||||
If the current process is being run from DVC, this function will block
|
||||
until DVC has finished creating the checkpoint. Otherwise, this function
|
||||
will return immediately.
|
||||
"""
|
||||
if os.getenv(DVC_CHECKPOINT) is None:
|
||||
return
|
||||
|
||||
root_dir = os.getenv(DVC_ROOT, Repo.find_root())
|
||||
signal_file = os.path.join(
|
||||
root_dir, Repo.DVC_DIR, "tmp", CheckpointTask.SIGNAL_FILE
|
||||
)
|
||||
|
||||
with builtins.open(signal_file, "w", encoding="utf-8") as fobj:
|
||||
# NOTE: force flushing/writing empty file to disk, otherwise when
|
||||
# run in certain contexts (pytest) file may not actually be written
|
||||
fobj.write("")
|
||||
fobj.flush()
|
||||
os.fsync(fobj.fileno())
|
||||
while os.path.exists(signal_file):
|
||||
sleep(0.1)
|
||||
@@ -0,0 +1,278 @@
|
||||
from collections import Counter
|
||||
from typing import Dict, Iterable, Optional, Union
|
||||
|
||||
from funcy import first
|
||||
|
||||
from dvc.exceptions import DvcException
|
||||
from dvc.repo import Repo
|
||||
|
||||
|
||||
def params_show(
|
||||
*targets: str,
|
||||
repo: Optional[str] = None,
|
||||
stages: Optional[Union[str, Iterable[str]]] = None,
|
||||
rev: Optional[str] = None,
|
||||
deps: bool = False,
|
||||
) -> Dict:
|
||||
"""Get parameters tracked in `repo`.
|
||||
|
||||
Without arguments, this function will retrieve all params from all tracked
|
||||
parameter files, for the current working tree.
|
||||
|
||||
See the options below to restrict the parameters retrieved.
|
||||
|
||||
Args:
|
||||
*targets (str, optional): Names of the parameter files to retrieve
|
||||
params from. For example, "params.py, myparams.toml".
|
||||
If no `targets` are provided, all parameter files tracked in `dvc.yaml`
|
||||
will be used.
|
||||
Note that targets don't necessarily have to be defined in `dvc.yaml`.
|
||||
repo (str, optional): location of the DVC repository.
|
||||
Defaults to the current project (found by walking up from the
|
||||
current working directory tree).
|
||||
It can be a URL or a file system path.
|
||||
Both HTTP and SSH protocols are supported for online Git repos
|
||||
(e.g. [user@]server:project.git).
|
||||
stages (Union[str, Iterable[str]], optional): Name or names of the
|
||||
stages to retrieve parameters from.
|
||||
Defaults to `None`.
|
||||
If `None`, all parameters from all stages will be retrieved.
|
||||
If this method is called from a different location to the one where
|
||||
the `dvc.yaml` is found, the relative path to the `dvc.yaml` must
|
||||
be provided as a prefix with the syntax `{relpath}:{stage}`.
|
||||
For example: `subdir/dvc.yaml:stage-0` or `../dvc.yaml:stage-1`.
|
||||
rev (str, optional): Name of the `Git revision`_ to retrieve parameters
|
||||
from.
|
||||
Defaults to `None`.
|
||||
An example of git revision can be a branch or tag name, a commit
|
||||
hash or a dvc experiment name.
|
||||
If `repo` is not a Git repo, this option is ignored.
|
||||
If `None`, the current working tree will be used.
|
||||
deps (bool, optional): Whether to retrieve only parameters that are
|
||||
stage dependencies or not.
|
||||
Defaults to `False`.
|
||||
|
||||
Returns:
|
||||
Dict: See Examples below.
|
||||
|
||||
Raises:
|
||||
DvcException: If no params are found in `repo`.
|
||||
|
||||
Examples:
|
||||
|
||||
- No arguments.
|
||||
|
||||
Working on https://github.com/iterative/example-get-started
|
||||
|
||||
>>> import json
|
||||
>>> import dvc.api
|
||||
>>> params = dvc.api.params_show()
|
||||
>>> print(json.dumps(params, indent=4))
|
||||
{
|
||||
"prepare": {
|
||||
"split": 0.2,
|
||||
"seed": 20170428
|
||||
},
|
||||
"featurize": {
|
||||
"max_features": 200,
|
||||
"ngrams": 2
|
||||
},
|
||||
"train": {
|
||||
"seed": 20170428,
|
||||
"n_est": 50,
|
||||
"min_split": 0.01
|
||||
}
|
||||
}
|
||||
|
||||
---
|
||||
|
||||
- Filtering with `stages`.
|
||||
|
||||
Working on https://github.com/iterative/example-get-started
|
||||
|
||||
`stages` can a single string:
|
||||
|
||||
>>> import json
|
||||
>>> import dvc.api
|
||||
>>> params = dvc.api.params_show(stages="prepare")
|
||||
>>> print(json.dumps(params, indent=4))
|
||||
{
|
||||
"prepare": {
|
||||
"split": 0.2,
|
||||
"seed": 20170428
|
||||
}
|
||||
}
|
||||
|
||||
Or an iterable of strings:
|
||||
|
||||
>>> import json
|
||||
>>> import dvc.api
|
||||
>>> params = dvc.api.params_show(stages=["prepare", "train"])
|
||||
>>> print(json.dumps(params, indent=4))
|
||||
{
|
||||
"prepare": {
|
||||
"split": 0.2,
|
||||
"seed": 20170428
|
||||
},
|
||||
"train": {
|
||||
"seed": 20170428,
|
||||
"n_est": 50,
|
||||
"min_split": 0.01
|
||||
}
|
||||
}
|
||||
|
||||
---
|
||||
|
||||
- Using `rev`.
|
||||
|
||||
Working on https://github.com/iterative/example-get-started
|
||||
|
||||
>>> import json
|
||||
>>> import dvc.api
|
||||
>>> params = dvc.api.params_show(rev="tune-hyperparams")
|
||||
>>> print(json.dumps(params, indent=4))
|
||||
{
|
||||
"prepare": {
|
||||
"split": 0.2,
|
||||
"seed": 20170428
|
||||
},
|
||||
"featurize": {
|
||||
"max_features": 200,
|
||||
"ngrams": 2
|
||||
},
|
||||
"train": {
|
||||
"seed": 20170428,
|
||||
"n_est": 100,
|
||||
"min_split": 8
|
||||
}
|
||||
}
|
||||
|
||||
---
|
||||
|
||||
- Using `targets`.
|
||||
|
||||
Working on `multi-params-files` folder of
|
||||
https://github.com/iterative/pipeline-conifguration
|
||||
|
||||
You can pass a single target:
|
||||
|
||||
>>> import json
|
||||
>>> import dvc.api
|
||||
>>> params = dvc.api.params_show("params.yaml")
|
||||
>>> print(json.dumps(params, indent=4))
|
||||
{
|
||||
"run_mode": "prod",
|
||||
"configs": {
|
||||
"dev": "configs/params_dev.yaml",
|
||||
"test": "configs/params_test.yaml",
|
||||
"prod": "configs/params_prod.yaml"
|
||||
},
|
||||
"evaluate": {
|
||||
"dataset": "micro",
|
||||
"size": 5000,
|
||||
"metrics": ["f1", "roc-auc"],
|
||||
"metrics_file": "reports/metrics.json",
|
||||
"plots_cm": "reports/plot_confusion_matrix.png"
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
Or multiple targets:
|
||||
|
||||
>>> import json
|
||||
>>> import dvc.api
|
||||
>>> params = dvc.api.params_show(
|
||||
... "configs/params_dev.yaml", "configs/params_prod.yaml")
|
||||
>>> print(json.dumps(params, indent=4))
|
||||
{
|
||||
"configs/params_prod.yaml:run_mode": "prod",
|
||||
"configs/params_prod.yaml:config_file": "configs/params_prod.yaml",
|
||||
"configs/params_prod.yaml:data_load": {
|
||||
"dataset": "large",
|
||||
"sampling": {
|
||||
"enable": true,
|
||||
"size": 50000
|
||||
}
|
||||
},
|
||||
"configs/params_prod.yaml:train": {
|
||||
"epochs": 1000
|
||||
},
|
||||
"configs/params_dev.yaml:run_mode": "dev",
|
||||
"configs/params_dev.yaml:config_file": "configs/params_dev.yaml",
|
||||
"configs/params_dev.yaml:data_load": {
|
||||
"dataset": "development",
|
||||
"sampling": {
|
||||
"enable": true,
|
||||
"size": 1000
|
||||
}
|
||||
},
|
||||
"configs/params_dev.yaml:train": {
|
||||
"epochs": 10
|
||||
}
|
||||
}
|
||||
|
||||
---
|
||||
|
||||
- Git URL as `repo`.
|
||||
|
||||
>>> import json
|
||||
>>> import dvc.api
|
||||
>>> params = dvc.api.params_show(
|
||||
... repo="https://github.com/iterative/demo-fashion-mnist")
|
||||
{
|
||||
"train": {
|
||||
"batch_size": 128,
|
||||
"hidden_units": 64,
|
||||
"dropout": 0.4,
|
||||
"num_epochs": 10,
|
||||
"lr": 0.001,
|
||||
"conv_activation": "relu"
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
.. _Git revision:
|
||||
https://git-scm.com/docs/revisions
|
||||
|
||||
"""
|
||||
if isinstance(stages, str):
|
||||
stages = [stages]
|
||||
|
||||
def _onerror_raise(result: Dict, exception: Exception, *args, **kwargs):
|
||||
raise exception
|
||||
|
||||
def _postprocess(params):
|
||||
processed = {}
|
||||
for rev, rev_data in params.items():
|
||||
processed[rev] = {}
|
||||
|
||||
counts = Counter()
|
||||
for file_data in rev_data["data"].values():
|
||||
for k in file_data["data"]:
|
||||
counts[k] += 1
|
||||
|
||||
for file_name, file_data in rev_data["data"].items():
|
||||
to_merge = {
|
||||
(k if counts[k] == 1 else f"{file_name}:{k}"): v
|
||||
for k, v in file_data["data"].items()
|
||||
}
|
||||
processed[rev] = {**processed[rev], **to_merge}
|
||||
|
||||
if "workspace" in processed:
|
||||
del processed["workspace"]
|
||||
|
||||
if not processed:
|
||||
raise DvcException("No params found")
|
||||
|
||||
return processed[first(processed)]
|
||||
|
||||
with Repo.open(repo) as _repo:
|
||||
params = _repo.params.show(
|
||||
revs=rev if rev is None else [rev],
|
||||
targets=targets,
|
||||
deps=deps,
|
||||
onerror=_onerror_raise,
|
||||
stages=stages,
|
||||
)
|
||||
|
||||
return _postprocess(params)
|
||||
@@ -0,0 +1,227 @@
|
||||
"""This module provides an entrypoint to the dvc cli and parsing utils."""
|
||||
|
||||
import logging
|
||||
import sys
|
||||
|
||||
# Workaround for CPython bug. See [1] and [2] for more info.
|
||||
# [1] https://github.com/aws/aws-cli/blob/1.16.277/awscli/clidriver.py#L55
|
||||
# [2] https://bugs.python.org/issue29288
|
||||
from typing import Optional
|
||||
|
||||
"".encode("idna")
|
||||
|
||||
logger = logging.getLogger("dvc")
|
||||
|
||||
|
||||
class DvcParserError(Exception):
|
||||
"""Base class for CLI parser errors."""
|
||||
|
||||
def __init__(self):
|
||||
super().__init__("parser error")
|
||||
|
||||
|
||||
def parse_args(argv=None):
|
||||
"""Parses CLI arguments.
|
||||
|
||||
Args:
|
||||
argv: optional list of arguments to parse. sys.argv is used by default.
|
||||
|
||||
Raises:
|
||||
DvcParserError: raised for argument parsing errors.
|
||||
"""
|
||||
from .parser import get_main_parser
|
||||
|
||||
parser = get_main_parser()
|
||||
args = parser.parse_args(argv)
|
||||
args.parser = parser
|
||||
return args
|
||||
|
||||
|
||||
def _log_unknown_exceptions() -> None:
|
||||
from dvc.info import get_dvc_info
|
||||
from dvc.logger import FOOTER
|
||||
|
||||
logger.exception("unexpected error")
|
||||
if logger.isEnabledFor(logging.DEBUG):
|
||||
logger.debug("Version info for developers:\n%s", get_dvc_info())
|
||||
logger.info(FOOTER)
|
||||
return None
|
||||
|
||||
|
||||
def _log_exceptions(exc: Exception) -> Optional[int]:
|
||||
"""Try to log some known exceptions, that are not DVCExceptions."""
|
||||
from dvc.utils import error_link, format_link
|
||||
|
||||
if isinstance(exc, OSError):
|
||||
import errno
|
||||
|
||||
if exc.errno == errno.EMFILE:
|
||||
logger.exception(
|
||||
"too many open files, please visit "
|
||||
"{} to see how to handle this "
|
||||
"problem".format(error_link("many-files")),
|
||||
extra={"tb_only": True},
|
||||
)
|
||||
else:
|
||||
_log_unknown_exceptions()
|
||||
return None
|
||||
|
||||
from dvc.fs import AuthError, ConfigError, RemoteMissingDepsError
|
||||
|
||||
if isinstance(exc, RemoteMissingDepsError):
|
||||
from dvc.utils.pkg import PKG
|
||||
|
||||
proto = exc.protocol
|
||||
by_pkg = {
|
||||
"pip": f"pip install 'dvc[{proto}]'",
|
||||
"conda": f"conda install -c conda-forge dvc-{proto}",
|
||||
}
|
||||
|
||||
cmd = by_pkg.get(PKG)
|
||||
if cmd:
|
||||
link = format_link("https://dvc.org/doc/install")
|
||||
hint = (
|
||||
f"To install dvc with those dependencies, run:\n"
|
||||
"\n"
|
||||
f"\t{cmd}\n"
|
||||
"\n"
|
||||
f"See {link} for more info."
|
||||
)
|
||||
else:
|
||||
link = format_link("https://github.com/iterative/dvc/issues")
|
||||
hint = f"\nPlease report this bug to {link}. Thank you!"
|
||||
|
||||
logger.exception(
|
||||
f"URL '{exc.url}' is supported but requires these missing "
|
||||
f"dependencies: {exc.missing_deps}. {hint}",
|
||||
extra={"tb_only": True},
|
||||
)
|
||||
return None
|
||||
|
||||
if isinstance(exc, (AuthError, ConfigError)):
|
||||
link = format_link("https://man.dvc.org/remote/modify")
|
||||
logger.exception("configuration error")
|
||||
logger.exception(
|
||||
f"{exc!s}\nLearn more about configuration settings at {link}.",
|
||||
extra={"tb_only": True},
|
||||
)
|
||||
return 251
|
||||
|
||||
from dvc_data.hashfile.cache import DiskError
|
||||
|
||||
if isinstance(exc, DiskError):
|
||||
from dvc.utils import relpath
|
||||
|
||||
directory = relpath(exc.directory)
|
||||
logger.exception(
|
||||
f"Could not open pickled '{exc.type}' cache.\n"
|
||||
f"Remove the '{directory}' directory and then retry this command."
|
||||
f"\nSee {error_link('pickle')} for more information.",
|
||||
extra={"tb_only": True},
|
||||
)
|
||||
return None
|
||||
|
||||
from dvc_data.hashfile.build import IgnoreInCollectedDirError
|
||||
|
||||
if isinstance(exc, IgnoreInCollectedDirError):
|
||||
logger.exception("")
|
||||
return None
|
||||
|
||||
_log_unknown_exceptions()
|
||||
return None
|
||||
|
||||
|
||||
def main(argv=None): # noqa: C901
|
||||
"""Main entry point for dvc CLI.
|
||||
|
||||
Args:
|
||||
argv: optional list of arguments to parse. sys.argv is used by default.
|
||||
|
||||
Returns:
|
||||
int: command's return code.
|
||||
"""
|
||||
from dvc._debug import debugtools
|
||||
from dvc.config import ConfigError
|
||||
from dvc.exceptions import DvcException, NotDvcRepoError
|
||||
from dvc.logger import disable_other_loggers, set_loggers_level
|
||||
|
||||
# NOTE: stderr/stdout may be closed if we are running from dvc.daemon.
|
||||
# On Linux we directly call cli.main after double forking and closing
|
||||
# the copied parent's standard file descriptors. If we make any logging
|
||||
# calls in this state it will cause an exception due to writing to a closed
|
||||
# file descriptor.
|
||||
if sys.stderr.closed: # pylint: disable=using-constant-test
|
||||
logging.disable()
|
||||
elif sys.stdout.closed: # pylint: disable=using-constant-test
|
||||
logging.disable(logging.INFO)
|
||||
|
||||
args = None
|
||||
disable_other_loggers()
|
||||
|
||||
outerLogLevel = logger.level
|
||||
try:
|
||||
args = parse_args(argv)
|
||||
|
||||
level = None
|
||||
if args.quiet:
|
||||
level = logging.CRITICAL
|
||||
elif args.verbose == 1:
|
||||
level = logging.DEBUG
|
||||
elif args.verbose > 1:
|
||||
level = logging.TRACE
|
||||
|
||||
if level is not None:
|
||||
set_loggers_level(level)
|
||||
|
||||
logger.trace(args)
|
||||
|
||||
if not sys.stdout.closed and not args.quiet:
|
||||
from dvc.ui import ui
|
||||
|
||||
ui.enable()
|
||||
|
||||
with debugtools(args):
|
||||
cmd = args.func(args)
|
||||
ret = cmd.do_run()
|
||||
except ConfigError:
|
||||
logger.exception("configuration error")
|
||||
ret = 251
|
||||
except KeyboardInterrupt:
|
||||
logger.exception("interrupted by the user")
|
||||
ret = 252
|
||||
except BrokenPipeError:
|
||||
import os
|
||||
|
||||
# Python flushes standard streams on exit; redirect remaining output
|
||||
# to devnull to avoid another BrokenPipeError at shutdown
|
||||
# See: https://docs.python.org/3/library/signal.html#note-on-sigpipe
|
||||
devnull = os.open(os.devnull, os.O_WRONLY)
|
||||
os.dup2(devnull, sys.stdout.fileno())
|
||||
ret = 141 # 128 + 13 (SIGPIPE)
|
||||
except NotDvcRepoError:
|
||||
logger.exception("")
|
||||
ret = 253
|
||||
except DvcException:
|
||||
ret = 255
|
||||
logger.exception("")
|
||||
except DvcParserError:
|
||||
ret = 254
|
||||
except Exception as exc: # noqa, pylint: disable=broad-except
|
||||
# pylint: disable=no-member
|
||||
ret = _log_exceptions(exc) or 255
|
||||
|
||||
try:
|
||||
from dvc import analytics
|
||||
|
||||
if analytics.is_enabled():
|
||||
analytics.collect_and_send_report(args, ret)
|
||||
|
||||
return ret
|
||||
finally:
|
||||
logger.setLevel(outerLogLevel)
|
||||
|
||||
from dvc.external_repo import clean_repos
|
||||
|
||||
# Remove cached repos in the end of the call, these are anonymous
|
||||
# so won't be reused by any other subsequent run anyway.
|
||||
clean_repos()
|
||||
@@ -0,0 +1,20 @@
|
||||
from argparse import _AppendAction
|
||||
|
||||
|
||||
class CommaSeparatedArgs(_AppendAction): # pylint: disable=protected-access
|
||||
def __call__(self, parser, namespace, values, option_string=None):
|
||||
from funcy import ldistinct
|
||||
|
||||
items = getattr(namespace, self.dest) or []
|
||||
items.extend(map(str.strip, values.split(",")))
|
||||
setattr(namespace, self.dest, ldistinct(items))
|
||||
|
||||
|
||||
class KeyValueArgs(_AppendAction):
|
||||
def __call__(self, parser, namespace, values, option_string=None):
|
||||
items = getattr(namespace, self.dest) or {}
|
||||
for value in filter(bool, values):
|
||||
key, _, value = value.partition("=")
|
||||
items[key.strip()] = value
|
||||
|
||||
setattr(namespace, self.dest, items)
|
||||
@@ -0,0 +1,36 @@
|
||||
import logging
|
||||
import os
|
||||
from abc import ABC, abstractmethod
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
class CmdBase(ABC):
|
||||
UNINITIALIZED = False
|
||||
|
||||
def __init__(self, args):
|
||||
from dvc.repo import Repo
|
||||
|
||||
os.chdir(args.cd)
|
||||
|
||||
self.repo: "Repo" = Repo(uninitialized=self.UNINITIALIZED)
|
||||
self.config = self.repo.config
|
||||
self.args = args
|
||||
|
||||
def do_run(self):
|
||||
with self.repo:
|
||||
return self.run()
|
||||
|
||||
@abstractmethod
|
||||
def run(self):
|
||||
pass
|
||||
|
||||
|
||||
class CmdBaseNoRepo(CmdBase):
|
||||
def __init__(self, args): # pylint: disable=super-init-not-called
|
||||
self.args = args
|
||||
|
||||
os.chdir(args.cd)
|
||||
|
||||
def do_run(self):
|
||||
return self.run()
|
||||
@@ -1,17 +1,6 @@
|
||||
import argparse
|
||||
import logging
|
||||
|
||||
import shtab
|
||||
|
||||
from dvc.command.base import CmdBaseNoRepo, append_doc_link
|
||||
from dvc.ui import ui
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
FILE = shtab.FILE
|
||||
DIR = shtab.DIRECTORY
|
||||
|
||||
PREAMBLE = {
|
||||
"bash": """
|
||||
BASH_PREAMBLE = """
|
||||
# $1=COMP_WORDS[1]
|
||||
_dvc_compgen_DVCFiles() {
|
||||
compgen -d -S '/' -- $1 # recurse into subdirs
|
||||
@@ -30,11 +19,12 @@ _dvc_compgen_stages_and_files() {
|
||||
}
|
||||
|
||||
_dvc_compgen_exps() {
|
||||
local _dvc_exps=($(dvc exp list -q --all --names-only))
|
||||
local _dvc_exps=($(dvc exp list -q --all-commits --names-only))
|
||||
compgen -W "${_dvc_exps[*]}" -- $1
|
||||
}
|
||||
""",
|
||||
"zsh": """
|
||||
"""
|
||||
|
||||
ZSH_PREAMBLE = """
|
||||
_dvc_compadd_DVCFiles() {
|
||||
_files -g '(*?.dvc|Dvcfile|dvc.yaml)'
|
||||
}
|
||||
@@ -63,49 +53,21 @@ _dvc_compadd_stages_and_files() {
|
||||
}
|
||||
|
||||
_dvc_compadd_exps() {
|
||||
_describe 'experiments' "($(dvc exp list -q -a --names-only))"
|
||||
_describe 'experiments' "($(dvc exp list -q --all-commits --names-only))"
|
||||
}
|
||||
""",
|
||||
"""
|
||||
|
||||
PREAMBLE = {
|
||||
"bash": BASH_PREAMBLE,
|
||||
"zsh": ZSH_PREAMBLE,
|
||||
}
|
||||
|
||||
FILE = shtab.FILE
|
||||
DIR = shtab.DIRECTORY
|
||||
DVC_FILE = {"bash": "_dvc_compgen_DVCFiles", "zsh": "_dvc_compadd_DVCFiles"}
|
||||
|
||||
STAGE = {"bash": "_dvc_compgen_stages", "zsh": "_dvc_compadd_stages"}
|
||||
|
||||
DVCFILES_AND_STAGE = {
|
||||
"bash": "_dvc_compgen_stages_and_files",
|
||||
"zsh": "_dvc_compadd_stages_and_files",
|
||||
}
|
||||
|
||||
EXPERIMENT = {"bash": "_dvc_compgen_exps", "zsh": "_dvc_compadd_exps"}
|
||||
|
||||
|
||||
class CmdCompletion(CmdBaseNoRepo):
|
||||
def run(self):
|
||||
from dvc.cli import get_main_parser
|
||||
|
||||
parser = get_main_parser()
|
||||
shell = self.args.shell
|
||||
script = shtab.complete(parser, shell=shell, preamble=PREAMBLE)
|
||||
ui.write(script, force=True)
|
||||
return 0
|
||||
|
||||
|
||||
def add_parser(subparsers, parent_parser):
|
||||
COMPLETION_HELP = "Generate shell tab completion."
|
||||
COMPLETION_DESCRIPTION = "Prints out shell tab completion scripts."
|
||||
completion_parser = subparsers.add_parser(
|
||||
"completion",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(COMPLETION_DESCRIPTION, "completion"),
|
||||
help=COMPLETION_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
completion_parser.add_argument(
|
||||
"-s",
|
||||
"--shell",
|
||||
help="Shell syntax for completions.",
|
||||
default="bash",
|
||||
choices=["bash", "zsh"],
|
||||
)
|
||||
completion_parser.set_defaults(func=CmdCompletion)
|
||||
@@ -1,11 +1,10 @@
|
||||
"""DVC command line interface"""
|
||||
"""Main parser for the dvc cli."""
|
||||
import argparse
|
||||
import logging
|
||||
import os
|
||||
import sys
|
||||
|
||||
from ._debug import add_debugging_flags
|
||||
from .command import (
|
||||
from dvc.commands import (
|
||||
add,
|
||||
cache,
|
||||
check_ignore,
|
||||
@@ -15,6 +14,7 @@ from .command import (
|
||||
config,
|
||||
daemon,
|
||||
dag,
|
||||
data,
|
||||
data_sync,
|
||||
destroy,
|
||||
diff,
|
||||
@@ -28,13 +28,13 @@ from .command import (
|
||||
imp_url,
|
||||
init,
|
||||
install,
|
||||
live,
|
||||
ls,
|
||||
machine,
|
||||
metrics,
|
||||
move,
|
||||
params,
|
||||
plots,
|
||||
queue,
|
||||
remote,
|
||||
remove,
|
||||
repro,
|
||||
@@ -45,13 +45,14 @@ from .command import (
|
||||
update,
|
||||
version,
|
||||
)
|
||||
from .command.base import fix_subparsers
|
||||
from .exceptions import DvcParserError
|
||||
|
||||
from . import DvcParserError
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
COMMANDS = [
|
||||
init,
|
||||
queue,
|
||||
get,
|
||||
get_url,
|
||||
destroy,
|
||||
@@ -87,8 +88,8 @@ COMMANDS = [
|
||||
stage,
|
||||
experiments,
|
||||
check_ignore,
|
||||
live,
|
||||
machine,
|
||||
data,
|
||||
]
|
||||
|
||||
|
||||
@@ -96,7 +97,7 @@ def _find_parser(parser, cmd_cls):
|
||||
defaults = parser._defaults # pylint: disable=protected-access
|
||||
if not cmd_cls or cmd_cls == defaults.get("func"):
|
||||
parser.print_help()
|
||||
raise DvcParserError()
|
||||
raise DvcParserError
|
||||
|
||||
actions = parser._actions # pylint: disable=protected-access
|
||||
for action in actions:
|
||||
@@ -143,6 +144,8 @@ def get_parent_parser():
|
||||
When overwriting `-q` or `-v`, you need to instantiate a new object
|
||||
in order to prevent some weird behavior.
|
||||
"""
|
||||
from dvc._debug import add_debugging_flags
|
||||
|
||||
parent_parser = argparse.ArgumentParser(add_help=False)
|
||||
add_debugging_flags(parent_parser)
|
||||
log_level_group = parent_parser.add_mutually_exclusive_group()
|
||||
@@ -207,23 +210,11 @@ def get_main_parser():
|
||||
help="Use `dvc COMMAND --help` for command-specific help.",
|
||||
)
|
||||
|
||||
from .utils import fix_subparsers
|
||||
|
||||
fix_subparsers(subparsers)
|
||||
|
||||
for cmd in COMMANDS:
|
||||
cmd.add_parser(subparsers, parent_parser)
|
||||
|
||||
return parser
|
||||
|
||||
|
||||
def parse_args(argv=None):
|
||||
"""Parses CLI arguments.
|
||||
|
||||
Args:
|
||||
argv: optional list of arguments to parse. sys.argv is used by default.
|
||||
|
||||
Raises:
|
||||
dvc.exceptions.DvcParserError: raised for argument parsing errors.
|
||||
"""
|
||||
parser = get_main_parser()
|
||||
args = parser.parse_args(argv)
|
||||
return args
|
||||
@@ -0,0 +1,31 @@
|
||||
def fix_subparsers(subparsers):
|
||||
"""Workaround for bug in Python 3. See more info at:
|
||||
https://bugs.python.org/issue16308
|
||||
https://github.com/iterative/dvc/issues/769
|
||||
|
||||
Args:
|
||||
subparsers: subparsers to fix.
|
||||
"""
|
||||
subparsers.required = True
|
||||
subparsers.dest = "cmd"
|
||||
|
||||
|
||||
def append_doc_link(help_message, path):
|
||||
from dvc.utils import format_link
|
||||
|
||||
if not path:
|
||||
return help_message
|
||||
doc_base = "https://man.dvc.org/"
|
||||
return "{message}\nDocumentation: {link}".format(
|
||||
message=help_message, link=format_link(doc_base + path)
|
||||
)
|
||||
|
||||
|
||||
def fix_plumbing_subparsers(subparsers):
|
||||
# metavar needs to be explicitly set in order to hide plumbing subcommands
|
||||
# from the 'positional arguments' choices list
|
||||
# see: https://bugs.python.org/issue22848
|
||||
cmds = [
|
||||
cmd for cmd, parser in subparsers.choices.items() if parser.add_help
|
||||
]
|
||||
subparsers.metavar = "{{{}}}".format(",".join(cmds))
|
||||
@@ -1,59 +0,0 @@
|
||||
import logging
|
||||
import os
|
||||
from abc import ABC, abstractmethod
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
def fix_subparsers(subparsers):
|
||||
"""Workaround for bug in Python 3. See more info at:
|
||||
https://bugs.python.org/issue16308
|
||||
https://github.com/iterative/dvc/issues/769
|
||||
|
||||
Args:
|
||||
subparsers: subparsers to fix.
|
||||
"""
|
||||
subparsers.required = True
|
||||
subparsers.dest = "cmd"
|
||||
|
||||
|
||||
def append_doc_link(help_message, path):
|
||||
from dvc.utils import format_link
|
||||
|
||||
if not path:
|
||||
return help_message
|
||||
doc_base = "https://man.dvc.org/"
|
||||
return "{message}\nDocumentation: {link}".format(
|
||||
message=help_message, link=format_link(doc_base + path)
|
||||
)
|
||||
|
||||
|
||||
class CmdBase(ABC):
|
||||
UNINITIALIZED = False
|
||||
|
||||
def __init__(self, args):
|
||||
from dvc.repo import Repo
|
||||
|
||||
os.chdir(args.cd)
|
||||
|
||||
self.repo = Repo(uninitialized=self.UNINITIALIZED)
|
||||
self.config = self.repo.config
|
||||
self.args = args
|
||||
|
||||
def do_run(self):
|
||||
with self.repo:
|
||||
return self.run()
|
||||
|
||||
@abstractmethod
|
||||
def run(self):
|
||||
pass
|
||||
|
||||
|
||||
class CmdBaseNoRepo(CmdBase):
|
||||
def __init__(self, args): # pylint: disable=super-init-not-called
|
||||
self.args = args
|
||||
|
||||
os.chdir(args.cd)
|
||||
|
||||
def do_run(self):
|
||||
return self.run()
|
||||
File diff suppressed because it is too large
Load Diff
@@ -1,93 +0,0 @@
|
||||
import argparse
|
||||
from pathlib import Path
|
||||
|
||||
from dvc.command import completion
|
||||
from dvc.command.base import CmdBase, fix_subparsers
|
||||
from dvc.ui import ui
|
||||
|
||||
|
||||
class CmdLive(CmdBase):
|
||||
UNINITIALIZED = True
|
||||
|
||||
def _run(self, target, revs=None):
|
||||
metrics, plots = self.repo.live.show(target=target, revs=revs)
|
||||
|
||||
if plots:
|
||||
html_path = Path.cwd() / (self.args.target + "_html")
|
||||
from dvc.render.utils import render
|
||||
|
||||
index_path = render(self.repo, plots, metrics, html_path)
|
||||
ui.write(index_path.as_uri())
|
||||
return 0
|
||||
return 1
|
||||
|
||||
|
||||
class CmdLiveShow(CmdLive):
|
||||
def run(self):
|
||||
return self._run(self.args.target)
|
||||
|
||||
|
||||
class CmdLiveDiff(CmdLive):
|
||||
def run(self):
|
||||
return self._run(self.args.target, self.args.revs)
|
||||
|
||||
|
||||
def shared_parent_parser():
|
||||
parent_parser = argparse.ArgumentParser(add_help=False)
|
||||
parent_parser.add_argument(
|
||||
"target", help="Logs dir to produce summary from"
|
||||
).complete = completion.DIR
|
||||
parent_parser.add_argument(
|
||||
"-o",
|
||||
"--out",
|
||||
default=None,
|
||||
help="Destination path to save plots to",
|
||||
metavar="<path>",
|
||||
).complete = completion.DIR
|
||||
return parent_parser
|
||||
|
||||
|
||||
def add_parser(subparsers, parent_parser):
|
||||
LIVE_DESCRIPTION = (
|
||||
"Commands to visualize and compare dvclive-produced logs."
|
||||
)
|
||||
live_parser = subparsers.add_parser(
|
||||
"live",
|
||||
parents=[parent_parser],
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
description=LIVE_DESCRIPTION,
|
||||
)
|
||||
live_subparsers = live_parser.add_subparsers(
|
||||
dest="cmd",
|
||||
help="Use `dvc live CMD --help` to display command-specific help.",
|
||||
)
|
||||
|
||||
fix_subparsers(live_subparsers)
|
||||
|
||||
SHOW_HELP = "Visualize dvclive directory content."
|
||||
live_show_parser = live_subparsers.add_parser(
|
||||
"show",
|
||||
parents=[parent_parser, shared_parent_parser()],
|
||||
help=SHOW_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
live_show_parser.set_defaults(func=CmdLiveShow)
|
||||
|
||||
DIFF_HELP = (
|
||||
"Show multiple versions of dvclive data, "
|
||||
"by plotting it in single view."
|
||||
)
|
||||
live_diff_parser = live_subparsers.add_parser(
|
||||
"diff",
|
||||
parents=[parent_parser, shared_parent_parser()],
|
||||
help=DIFF_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
live_diff_parser.add_argument(
|
||||
"--revs",
|
||||
nargs="*",
|
||||
default=None,
|
||||
help="Git revision (e.g. SHA, branch, tag)",
|
||||
metavar="<commit>",
|
||||
)
|
||||
live_diff_parser.set_defaults(func=CmdLiveDiff)
|
||||
@@ -1,265 +0,0 @@
|
||||
import argparse
|
||||
import logging
|
||||
|
||||
from dvc.command import completion
|
||||
from dvc.command.base import CmdBase, append_doc_link, fix_subparsers
|
||||
from dvc.exceptions import DvcException
|
||||
from dvc.render.utils import find_vega, render
|
||||
from dvc.ui import ui
|
||||
from dvc.utils import format_link
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
class CmdPlots(CmdBase):
|
||||
def _func(self, *args, **kwargs):
|
||||
raise NotImplementedError
|
||||
|
||||
def _props(self):
|
||||
from dvc.schema import PLOT_PROPS
|
||||
|
||||
# Pass only props specified by user, to not shadow ones from plot def
|
||||
props = {p: getattr(self.args, p) for p in PLOT_PROPS}
|
||||
return {k: v for k, v in props.items() if v is not None}
|
||||
|
||||
def run(self):
|
||||
from pathlib import Path
|
||||
|
||||
if self.args.show_vega:
|
||||
if not self.args.targets:
|
||||
logger.error("please specify a target for `--show-vega`")
|
||||
return 1
|
||||
if len(self.args.targets) > 1:
|
||||
logger.error(
|
||||
"you can only specify one target for `--show-vega`"
|
||||
)
|
||||
return 1
|
||||
|
||||
try:
|
||||
plots_data = self._func(
|
||||
targets=self.args.targets, props=self._props()
|
||||
)
|
||||
|
||||
if not plots_data:
|
||||
ui.error_write(
|
||||
"No plots were loaded, "
|
||||
"visualization file will not be created."
|
||||
)
|
||||
|
||||
if self.args.show_vega:
|
||||
target = self.args.targets[0]
|
||||
plot_json = find_vega(self.repo, plots_data, target)
|
||||
if plot_json:
|
||||
ui.write(plot_json)
|
||||
return 0
|
||||
|
||||
rel: str = self.args.out or "dvc_plots"
|
||||
path: Path = (Path.cwd() / rel).resolve()
|
||||
index_path = render(
|
||||
self.repo,
|
||||
plots_data,
|
||||
path=path,
|
||||
html_template_path=self.args.html_template,
|
||||
)
|
||||
|
||||
ui.write(index_path.as_uri())
|
||||
|
||||
if self.args.open:
|
||||
return ui.open_browser(index_path)
|
||||
|
||||
return 0
|
||||
|
||||
except DvcException:
|
||||
logger.exception("")
|
||||
return 1
|
||||
|
||||
|
||||
class CmdPlotsShow(CmdPlots):
|
||||
UNINITIALIZED = True
|
||||
|
||||
def _func(self, *args, **kwargs):
|
||||
return self.repo.plots.show(*args, **kwargs)
|
||||
|
||||
|
||||
class CmdPlotsDiff(CmdPlots):
|
||||
UNINITIALIZED = True
|
||||
|
||||
def _func(self, *args, **kwargs):
|
||||
return self.repo.plots.diff(
|
||||
*args,
|
||||
revs=self.args.revisions,
|
||||
experiment=self.args.experiment,
|
||||
**kwargs,
|
||||
)
|
||||
|
||||
|
||||
class CmdPlotsModify(CmdPlots):
|
||||
def run(self):
|
||||
self.repo.plots.modify(
|
||||
self.args.target, props=self._props(), unset=self.args.unset
|
||||
)
|
||||
return 0
|
||||
|
||||
|
||||
def add_parser(subparsers, parent_parser):
|
||||
PLOTS_HELP = (
|
||||
"Commands to visualize and compare plot metrics in structured files "
|
||||
"(JSON, YAML, CSV, TSV)."
|
||||
)
|
||||
|
||||
plots_parser = subparsers.add_parser(
|
||||
"plots",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(PLOTS_HELP, "plots"),
|
||||
help=PLOTS_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
plots_subparsers = plots_parser.add_subparsers(
|
||||
dest="cmd",
|
||||
help="Use `dvc plots CMD --help` to display command-specific help.",
|
||||
)
|
||||
|
||||
fix_subparsers(plots_subparsers)
|
||||
|
||||
SHOW_HELP = "Generate plots from metrics files."
|
||||
plots_show_parser = plots_subparsers.add_parser(
|
||||
"show",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(SHOW_HELP, "plots/show"),
|
||||
help=SHOW_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
plots_show_parser.add_argument(
|
||||
"targets",
|
||||
nargs="*",
|
||||
help="Files to visualize (supports any file, "
|
||||
"even when not found as `plots` in `dvc.yaml`). "
|
||||
"Shows all plots by default.",
|
||||
).complete = completion.FILE
|
||||
_add_props_arguments(plots_show_parser)
|
||||
_add_output_arguments(plots_show_parser)
|
||||
plots_show_parser.set_defaults(func=CmdPlotsShow)
|
||||
|
||||
PLOTS_DIFF_HELP = (
|
||||
"Show multiple versions of plot metrics "
|
||||
"by plotting them in a single image."
|
||||
)
|
||||
plots_diff_parser = plots_subparsers.add_parser(
|
||||
"diff",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(PLOTS_DIFF_HELP, "plots/diff"),
|
||||
help=PLOTS_DIFF_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
plots_diff_parser.add_argument(
|
||||
"--targets",
|
||||
nargs="*",
|
||||
help=(
|
||||
"Specific plots file(s) to visualize "
|
||||
"(even if not found as `plots` in `dvc.yaml`). "
|
||||
"Shows all tracked plots by default."
|
||||
),
|
||||
metavar="<paths>",
|
||||
).complete = completion.FILE
|
||||
plots_diff_parser.add_argument(
|
||||
"-e",
|
||||
"--experiment",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help=argparse.SUPPRESS,
|
||||
)
|
||||
plots_diff_parser.add_argument(
|
||||
"revisions", nargs="*", default=None, help="Git commits to plot from"
|
||||
)
|
||||
_add_props_arguments(plots_diff_parser)
|
||||
_add_output_arguments(plots_diff_parser)
|
||||
plots_diff_parser.set_defaults(func=CmdPlotsDiff)
|
||||
|
||||
PLOTS_MODIFY_HELP = (
|
||||
"Modify display properties of data-series plots "
|
||||
"(has no effect on image-type plots)."
|
||||
)
|
||||
plots_modify_parser = plots_subparsers.add_parser(
|
||||
"modify",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(PLOTS_MODIFY_HELP, "plots/modify"),
|
||||
help=PLOTS_MODIFY_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
plots_modify_parser.add_argument(
|
||||
"target", help="Metric file to set properties to"
|
||||
).complete = completion.FILE
|
||||
_add_props_arguments(plots_modify_parser)
|
||||
plots_modify_parser.add_argument(
|
||||
"--unset",
|
||||
nargs="*",
|
||||
metavar="<property>",
|
||||
help="Unset one or more display properties.",
|
||||
)
|
||||
plots_modify_parser.set_defaults(func=CmdPlotsModify)
|
||||
|
||||
|
||||
def _add_props_arguments(parser):
|
||||
parser.add_argument(
|
||||
"-t",
|
||||
"--template",
|
||||
nargs="?",
|
||||
default=None,
|
||||
help=(
|
||||
"Special JSON or HTML schema file to inject with the data. "
|
||||
"See {}".format(
|
||||
format_link("https://man.dvc.org/plots#plot-templates")
|
||||
)
|
||||
),
|
||||
metavar="<path>",
|
||||
).complete = completion.FILE
|
||||
parser.add_argument(
|
||||
"-x", default=None, help="Field name for X axis.", metavar="<field>"
|
||||
)
|
||||
parser.add_argument(
|
||||
"-y", default=None, help="Field name for Y axis.", metavar="<field>"
|
||||
)
|
||||
parser.add_argument(
|
||||
"--no-header",
|
||||
action="store_false",
|
||||
dest="header",
|
||||
default=None, # Use default None to distinguish when it's not used
|
||||
help="Provided CSV or TSV datafile does not have a header.",
|
||||
)
|
||||
parser.add_argument(
|
||||
"--title", default=None, metavar="<text>", help="Plot title."
|
||||
)
|
||||
parser.add_argument(
|
||||
"--x-label", default=None, help="X axis label", metavar="<text>"
|
||||
)
|
||||
parser.add_argument(
|
||||
"--y-label", default=None, help="Y axis label", metavar="<text>"
|
||||
)
|
||||
|
||||
|
||||
def _add_output_arguments(parser):
|
||||
parser.add_argument(
|
||||
"-o",
|
||||
"--out",
|
||||
default=None,
|
||||
help="Destination path to save plots to",
|
||||
metavar="<path>",
|
||||
).complete = completion.DIR
|
||||
parser.add_argument(
|
||||
"--show-vega",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Show output in Vega format.",
|
||||
)
|
||||
parser.add_argument(
|
||||
"--open",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Open plot file directly in the browser.",
|
||||
)
|
||||
parser.add_argument(
|
||||
"--html-template",
|
||||
default=None,
|
||||
help="Custom HTML template for VEGA visualization.",
|
||||
metavar="<path>",
|
||||
)
|
||||
@@ -1,12 +1,44 @@
|
||||
import argparse
|
||||
import logging
|
||||
|
||||
from dvc.command import completion
|
||||
from dvc.command.base import CmdBase, append_doc_link
|
||||
from dvc.cli import completion
|
||||
from dvc.cli.actions import KeyValueArgs
|
||||
from dvc.cli.command import CmdBase
|
||||
from dvc.cli.utils import append_doc_link
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
def _add_annotating_args(parser: argparse.ArgumentParser) -> None:
|
||||
parser.add_argument(
|
||||
"--desc",
|
||||
type=str,
|
||||
metavar="<text>",
|
||||
help="User description of the data.",
|
||||
)
|
||||
parser.add_argument(
|
||||
"--meta",
|
||||
metavar="key=value",
|
||||
nargs=1,
|
||||
action=KeyValueArgs,
|
||||
help="Custom metadata to add to the data.",
|
||||
)
|
||||
parser.add_argument(
|
||||
"--label",
|
||||
dest="labels",
|
||||
type=str,
|
||||
action="append",
|
||||
metavar="<str>",
|
||||
help="Label for the data.",
|
||||
)
|
||||
parser.add_argument(
|
||||
"--type",
|
||||
type=str,
|
||||
metavar="<str>",
|
||||
help="Type of the data.",
|
||||
)
|
||||
|
||||
|
||||
class CmdAdd(CmdBase):
|
||||
def run(self):
|
||||
from dvc.exceptions import (
|
||||
@@ -27,6 +59,9 @@ class CmdAdd(CmdBase):
|
||||
glob=self.args.glob,
|
||||
desc=self.args.desc,
|
||||
out=self.args.out,
|
||||
type=self.args.type,
|
||||
labels=self.args.labels,
|
||||
meta=self.args.meta,
|
||||
remote=self.args.remote,
|
||||
to_remote=self.args.to_remote,
|
||||
jobs=self.args.jobs,
|
||||
@@ -101,21 +136,15 @@ def add_parser(subparsers, parent_parser):
|
||||
"--jobs",
|
||||
type=int,
|
||||
help=(
|
||||
"Number of jobs to run simultaneously. "
|
||||
"Only used along with '--to-remote'. "
|
||||
"Number of jobs to run simultaneously "
|
||||
"when pushing data to remote."
|
||||
"The default value is 4 * cpu_count(). "
|
||||
"For SSH remotes, the default is 4. "
|
||||
),
|
||||
metavar="<number>",
|
||||
)
|
||||
parser.add_argument(
|
||||
"--desc",
|
||||
type=str,
|
||||
metavar="<text>",
|
||||
help=(
|
||||
"User description of the data (optional). "
|
||||
"This doesn't affect any DVC operations."
|
||||
),
|
||||
)
|
||||
|
||||
_add_annotating_args(parser)
|
||||
parser.add_argument(
|
||||
"targets", nargs="+", help="Input files/directories to add."
|
||||
).complete = completion.FILE
|
||||
@@ -1,8 +1,8 @@
|
||||
import argparse
|
||||
|
||||
from dvc.command import completion
|
||||
from dvc.command.base import append_doc_link, fix_subparsers
|
||||
from dvc.command.config import CmdConfig
|
||||
from dvc.cli import completion
|
||||
from dvc.cli.utils import append_doc_link, fix_subparsers
|
||||
from dvc.commands.config import CmdConfig
|
||||
from dvc.ui import ui
|
||||
|
||||
|
||||
@@ -28,7 +28,7 @@ class CmdCacheDir(CmdConfig):
|
||||
|
||||
|
||||
def add_parser(subparsers, parent_parser):
|
||||
from dvc.command.config import parent_config_parser
|
||||
from dvc.commands.config import parent_config_parser
|
||||
|
||||
CACHE_HELP = "Manage cache settings."
|
||||
|
||||
@@ -1,7 +1,8 @@
|
||||
import argparse
|
||||
|
||||
from dvc.command import completion
|
||||
from dvc.command.base import CmdBase, append_doc_link
|
||||
from dvc.cli import completion
|
||||
from dvc.cli.command import CmdBase
|
||||
from dvc.cli.utils import append_doc_link
|
||||
from dvc.ui import ui
|
||||
|
||||
|
||||
@@ -1,8 +1,9 @@
|
||||
import argparse
|
||||
import operator
|
||||
|
||||
from dvc.command import completion
|
||||
from dvc.command.base import CmdBase, append_doc_link
|
||||
from dvc.cli import completion
|
||||
from dvc.cli.command import CmdBase
|
||||
from dvc.cli.utils import append_doc_link
|
||||
from dvc.exceptions import CheckoutError
|
||||
from dvc.ui import ui
|
||||
|
||||
@@ -54,6 +55,10 @@ class CmdCheckout(CmdBase):
|
||||
|
||||
if exc:
|
||||
raise exc
|
||||
|
||||
if self.args.relink:
|
||||
msg = "Relinked successfully"
|
||||
ui.write(msg)
|
||||
return 0
|
||||
|
||||
|
||||
@@ -1,8 +1,9 @@
|
||||
import argparse
|
||||
import logging
|
||||
|
||||
from dvc.command import completion
|
||||
from dvc.command.base import CmdBase, append_doc_link
|
||||
from dvc.cli import completion
|
||||
from dvc.cli.command import CmdBase
|
||||
from dvc.cli.utils import append_doc_link
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
@@ -0,0 +1,40 @@
|
||||
import argparse
|
||||
import logging
|
||||
|
||||
from dvc.cli.command import CmdBaseNoRepo
|
||||
from dvc.cli.completion import PREAMBLE
|
||||
from dvc.cli.utils import append_doc_link
|
||||
from dvc.ui import ui
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
class CmdCompletion(CmdBaseNoRepo):
|
||||
def run(self):
|
||||
import shtab
|
||||
|
||||
shell = self.args.shell
|
||||
parser = self.args.parser
|
||||
script = shtab.complete(parser, shell=shell, preamble=PREAMBLE)
|
||||
ui.write(script, force=True)
|
||||
return 0
|
||||
|
||||
|
||||
def add_parser(subparsers, parent_parser):
|
||||
COMPLETION_HELP = "Generate shell tab completion."
|
||||
COMPLETION_DESCRIPTION = "Prints out shell tab completion scripts."
|
||||
completion_parser = subparsers.add_parser(
|
||||
"completion",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(COMPLETION_DESCRIPTION, "completion"),
|
||||
help=COMPLETION_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
completion_parser.add_argument(
|
||||
"-s",
|
||||
"--shell",
|
||||
help="Shell syntax for completions.",
|
||||
default="bash",
|
||||
choices=["bash", "zsh"],
|
||||
)
|
||||
completion_parser.set_defaults(func=CmdCompletion)
|
||||
@@ -2,7 +2,8 @@ import argparse
|
||||
import logging
|
||||
import os
|
||||
|
||||
from dvc.command.base import CmdBaseNoRepo, append_doc_link
|
||||
from dvc.cli.command import CmdBaseNoRepo
|
||||
from dvc.cli.utils import append_doc_link
|
||||
from dvc.ui import ui
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
@@ -1,5 +1,6 @@
|
||||
from dvc.command import completion
|
||||
from dvc.command.base import CmdBaseNoRepo, fix_subparsers
|
||||
from dvc.cli import completion
|
||||
from dvc.cli.command import CmdBaseNoRepo
|
||||
from dvc.cli.utils import fix_subparsers
|
||||
|
||||
|
||||
class CmdDaemonBase(CmdBaseNoRepo):
|
||||
@@ -1,10 +1,15 @@
|
||||
import argparse
|
||||
from typing import TYPE_CHECKING
|
||||
|
||||
from dvc.command.base import CmdBase, append_doc_link
|
||||
from dvc.cli.command import CmdBase
|
||||
from dvc.cli.utils import append_doc_link
|
||||
from dvc.ui import ui
|
||||
|
||||
if TYPE_CHECKING:
|
||||
from networkx import DiGraph
|
||||
|
||||
def _show_ascii(G):
|
||||
|
||||
def _show_ascii(G: "DiGraph"):
|
||||
from dvc.dagascii import draw
|
||||
from dvc.repo.graph import get_pipelines
|
||||
|
||||
@@ -17,16 +22,54 @@ def _show_ascii(G):
|
||||
return "\n".join(ret)
|
||||
|
||||
|
||||
def _show_dot(G):
|
||||
def _quote_label(node):
|
||||
label = str(node)
|
||||
# Node names should not contain ":" unless they are quoted with "".
|
||||
# See: https://github.com/pydot/pydot/issues/258.
|
||||
if label[0] != '"' and label[-1] != '"':
|
||||
return f'"{label}"'
|
||||
return label
|
||||
|
||||
|
||||
def _show_dot(G: "DiGraph"):
|
||||
import io
|
||||
|
||||
import networkx as nx
|
||||
from networkx.drawing.nx_pydot import write_dot
|
||||
|
||||
dot_file = io.StringIO()
|
||||
write_dot(G, dot_file)
|
||||
|
||||
nx.relabel_nodes(G, _quote_label, copy=False)
|
||||
write_dot(G.reverse(), dot_file)
|
||||
return dot_file.getvalue()
|
||||
|
||||
|
||||
def _show_mermaid(G, markdown: bool = False):
|
||||
from dvc.repo.graph import get_pipelines
|
||||
|
||||
pipelines = get_pipelines(G)
|
||||
|
||||
graph = "flowchart TD"
|
||||
|
||||
total_nodes = 0
|
||||
for pipeline in pipelines:
|
||||
node_ids = {}
|
||||
nodes = sorted(str(x) for x in pipeline.nodes)
|
||||
for node in nodes:
|
||||
total_nodes += 1
|
||||
node_id = f"node{total_nodes}"
|
||||
graph += f'\n\t{node_id}["{node}"]'
|
||||
node_ids[node] = node_id
|
||||
edges = sorted((str(a), str(b)) for b, a in pipeline.edges)
|
||||
for a, b in edges:
|
||||
graph += f"\n\t{node_ids[str(a)]}-->{node_ids[str(b)]}"
|
||||
|
||||
if markdown:
|
||||
return f"```mermaid\n{graph}\n```"
|
||||
|
||||
return graph
|
||||
|
||||
|
||||
def _collect_targets(repo, target, outs):
|
||||
if not target:
|
||||
return []
|
||||
@@ -43,9 +86,9 @@ def _collect_targets(repo, target, outs):
|
||||
targets.extend([str(out) for out in stage.outs])
|
||||
continue
|
||||
|
||||
for out in outs_trie.itervalues(
|
||||
for out in outs_trie.itervalues( # noqa: B301
|
||||
prefix=repo.fs.path.parts(path)
|
||||
): # noqa: B301
|
||||
):
|
||||
targets.extend(str(out))
|
||||
|
||||
return targets
|
||||
@@ -104,6 +147,8 @@ class CmdDAG(CmdBase):
|
||||
|
||||
if self.args.dot:
|
||||
ui.write(_show_dot(G))
|
||||
elif self.args.mermaid or self.args.markdown:
|
||||
ui.write(_show_mermaid(G, self.args.markdown))
|
||||
else:
|
||||
with ui.pager():
|
||||
ui.write(_show_ascii(G))
|
||||
@@ -126,6 +171,20 @@ def add_parser(subparsers, parent_parser):
|
||||
default=False,
|
||||
help="Print DAG with .dot format.",
|
||||
)
|
||||
dag_parser.add_argument(
|
||||
"--mermaid",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Print DAG with mermaid format.",
|
||||
)
|
||||
dag_parser.add_argument(
|
||||
"--md",
|
||||
"--show-md",
|
||||
action="store_true",
|
||||
default=False,
|
||||
dest="markdown",
|
||||
help="Print DAG with mermaid format wrapped in Markdown block.",
|
||||
)
|
||||
dag_parser.add_argument(
|
||||
"--full",
|
||||
action="store_true",
|
||||
@@ -0,0 +1,293 @@
|
||||
import argparse
|
||||
import logging
|
||||
from operator import itemgetter
|
||||
from typing import TYPE_CHECKING, Any, Dict, Iterable, Set
|
||||
|
||||
from funcy import chunks, compact, log_durations
|
||||
|
||||
from dvc.cli import completion
|
||||
from dvc.cli.actions import CommaSeparatedArgs
|
||||
from dvc.cli.command import CmdBase
|
||||
from dvc.cli.utils import append_doc_link, fix_subparsers
|
||||
from dvc.ui import ui
|
||||
from dvc.utils import colorize
|
||||
|
||||
if TYPE_CHECKING:
|
||||
from dvc.repo.data import Status as DataStatus
|
||||
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
class CmdDataStatus(CmdBase):
|
||||
COLORS = {
|
||||
"not_in_cache": "red",
|
||||
"committed": "green",
|
||||
"uncommitted": "yellow",
|
||||
"untracked": "cyan",
|
||||
}
|
||||
LABELS = {
|
||||
"not_in_cache": "Not in cache",
|
||||
"committed": "DVC committed changes",
|
||||
"uncommitted": "DVC uncommitted changes",
|
||||
"untracked": "Untracked files",
|
||||
"unchanged": "DVC unchanged files",
|
||||
}
|
||||
HINTS = {
|
||||
"not_in_cache": ('use "dvc fetch <file>..." to download files',),
|
||||
"committed": (
|
||||
"git commit the corresponding dvc files to update the repo",
|
||||
),
|
||||
"uncommitted": (
|
||||
'use "dvc commit <file>..." to track changes',
|
||||
'use "dvc checkout <file>..." to discard changes',
|
||||
),
|
||||
"untracked": (
|
||||
'use "git add <file> ..." or '
|
||||
'"dvc add <file>..." to commit to git or to dvc',
|
||||
),
|
||||
"git_dirty": (
|
||||
"there are {}changes not tracked by dvc, "
|
||||
'use "git status" to see',
|
||||
),
|
||||
}
|
||||
|
||||
@staticmethod
|
||||
def _process_status(status: "DataStatus"):
|
||||
"""Flatten stage status, and filter empty stage status contents."""
|
||||
for stage, stage_status in status.items():
|
||||
items = stage_status
|
||||
if isinstance(stage_status, dict):
|
||||
items = {
|
||||
file: state
|
||||
for state, files in stage_status.items()
|
||||
for file in files
|
||||
}
|
||||
if not items:
|
||||
continue
|
||||
yield stage, items
|
||||
|
||||
@classmethod
|
||||
def _show_status(cls, status: "DataStatus") -> int:
|
||||
git_info = status.pop("git") # type: ignore[misc]
|
||||
result = dict(cls._process_status(status))
|
||||
if not result:
|
||||
no_changes = "No changes"
|
||||
if git_info.get("is_empty", False):
|
||||
no_changes += " in an empty git repo"
|
||||
ui.write(f"{no_changes}.")
|
||||
|
||||
for idx, (stage, stage_status) in enumerate(result.items()):
|
||||
if idx:
|
||||
ui.write()
|
||||
|
||||
label = cls.LABELS.get(stage, stage.capitalize() + " files")
|
||||
header = f"{label}:"
|
||||
color = cls.COLORS.get(stage, None)
|
||||
|
||||
ui.write(header)
|
||||
if hints := cls.HINTS.get(stage):
|
||||
for hint in hints:
|
||||
ui.write(f" ({hint})")
|
||||
|
||||
if isinstance(stage_status, dict):
|
||||
items = [
|
||||
": ".join([state, file])
|
||||
for file, state in stage_status.items()
|
||||
]
|
||||
else:
|
||||
items = stage_status
|
||||
|
||||
tabs = "\t".expandtabs(8)
|
||||
for chunk in chunks(1000, items):
|
||||
out = "\n".join(tabs + item for item in chunk)
|
||||
ui.write(colorize(out, color))
|
||||
|
||||
if (hints := cls.HINTS.get("git_dirty")) and git_info.get("is_dirty"):
|
||||
for hint in hints:
|
||||
message = hint.format("other " if result else "")
|
||||
ui.write(f"[blue]({message})[/]", styled=True)
|
||||
return 0
|
||||
|
||||
def run(self) -> int:
|
||||
with log_durations(logger.trace, "in data_status"): # type: ignore
|
||||
status = self.repo.data_status(
|
||||
granular=self.args.granular,
|
||||
untracked_files=self.args.untracked_files,
|
||||
)
|
||||
|
||||
if not self.args.unchanged:
|
||||
status.pop("unchanged") # type: ignore[misc]
|
||||
if self.args.untracked_files == "no":
|
||||
status.pop("untracked")
|
||||
if self.args.json:
|
||||
status.pop("git") # type: ignore[misc]
|
||||
ui.write_json(compact(status))
|
||||
return 0
|
||||
return self._show_status(status)
|
||||
|
||||
|
||||
class CmdDataLs(CmdBase):
|
||||
@staticmethod
|
||||
def _show_table(
|
||||
d: Iterable[Dict[str, Any]],
|
||||
filter_types: Set[str],
|
||||
filter_labels: Set[str],
|
||||
markdown: bool = False,
|
||||
) -> None:
|
||||
from rich.style import Style
|
||||
|
||||
from dvc.compare import TabularData
|
||||
|
||||
td = TabularData(
|
||||
columns=["Path", "Type", "Labels", "Description"], fill_value="-"
|
||||
)
|
||||
for entry in sorted(d, key=itemgetter("path")):
|
||||
typ = entry.get("type", "")
|
||||
desc = entry.get("desc", "-")
|
||||
labels = entry.get("labels", [])
|
||||
|
||||
if filter_types and typ not in filter_types:
|
||||
continue
|
||||
if filter_labels and filter_labels.isdisjoint(labels):
|
||||
continue
|
||||
|
||||
rich_label = ui.rich_text()
|
||||
for index, label in enumerate(labels):
|
||||
if index:
|
||||
rich_label.append(",")
|
||||
style = Style(bold=label in filter_labels, color="green")
|
||||
rich_label.append(label, style=style)
|
||||
|
||||
if markdown and desc:
|
||||
desc = desc.partition("\n")[0]
|
||||
|
||||
path = ui.rich_text(entry["path"], style="cyan")
|
||||
type_style = Style(bold=typ in filter_types, color="yellow")
|
||||
typ = ui.rich_text(entry.get("type", ""), style=type_style)
|
||||
td.append([path, typ or "-", rich_label or "-", desc])
|
||||
|
||||
td.render(markdown=markdown, rich_table=True)
|
||||
|
||||
def run(self):
|
||||
from dvc.repo.data import ls
|
||||
|
||||
filter_labels = set(self.args.labels)
|
||||
filter_types = set(self.args.type)
|
||||
d = ls(
|
||||
self.repo, targets=self.args.targets, recursive=self.args.recursive
|
||||
)
|
||||
self._show_table(
|
||||
d,
|
||||
filter_labels=filter_labels,
|
||||
filter_types=filter_types,
|
||||
markdown=self.args.markdown,
|
||||
)
|
||||
return 0
|
||||
|
||||
|
||||
def add_parser(subparsers, parent_parser):
|
||||
data_parser = subparsers.add_parser(
|
||||
"data",
|
||||
parents=[parent_parser],
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
data_subparsers = data_parser.add_subparsers(
|
||||
dest="cmd",
|
||||
help="Use `dvc data CMD --help` to display command-specific help.",
|
||||
)
|
||||
fix_subparsers(data_subparsers)
|
||||
|
||||
DATA_STATUS_HELP = (
|
||||
"Show changes between the last git commit, "
|
||||
"the dvcfiles and the workspace."
|
||||
)
|
||||
data_status_parser = data_subparsers.add_parser(
|
||||
"status",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(DATA_STATUS_HELP, "data/status"),
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
help=DATA_STATUS_HELP,
|
||||
)
|
||||
data_status_parser.add_argument(
|
||||
"--json",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Show output in JSON format.",
|
||||
)
|
||||
data_status_parser.add_argument(
|
||||
"--show-json",
|
||||
action="store_true",
|
||||
default=False,
|
||||
dest="json",
|
||||
help=argparse.SUPPRESS,
|
||||
)
|
||||
data_status_parser.add_argument(
|
||||
"--granular",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Show granular file-level info for DVC-tracked directories.",
|
||||
)
|
||||
data_status_parser.add_argument(
|
||||
"--unchanged",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Show unmodified DVC-tracked files.",
|
||||
)
|
||||
data_status_parser.add_argument(
|
||||
"--untracked-files",
|
||||
choices=["no", "all"],
|
||||
default="no",
|
||||
const="all",
|
||||
nargs="?",
|
||||
help="Show untracked files.",
|
||||
)
|
||||
data_status_parser.set_defaults(func=CmdDataStatus)
|
||||
|
||||
DATA_LS_HELP = "List data tracked by DVC with its metadata."
|
||||
data_ls_parser = data_subparsers.add_parser(
|
||||
"ls",
|
||||
aliases=["list"],
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(DATA_LS_HELP, "data/ls"),
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
help=DATA_LS_HELP,
|
||||
)
|
||||
data_ls_parser.add_argument(
|
||||
"--md",
|
||||
"--show-md",
|
||||
dest="markdown",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Show tabulated output in the Markdown format (GFM).",
|
||||
)
|
||||
data_ls_parser.add_argument(
|
||||
"--type",
|
||||
action=CommaSeparatedArgs,
|
||||
default=[],
|
||||
help="Comma-separated list of type to filter.",
|
||||
)
|
||||
data_ls_parser.add_argument(
|
||||
"--labels",
|
||||
action=CommaSeparatedArgs,
|
||||
default=[],
|
||||
help="Comma-separated list of labels to filter.",
|
||||
)
|
||||
data_ls_parser.add_argument(
|
||||
"-R",
|
||||
"--recursive",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Recursively list from the specified directories.",
|
||||
)
|
||||
data_ls_parser.add_argument(
|
||||
"targets",
|
||||
default=None,
|
||||
nargs="*",
|
||||
help=(
|
||||
"Limit command scope to these tracked files/directories, "
|
||||
".dvc files, or stage names."
|
||||
),
|
||||
).complete = completion.DVCFILES_AND_STAGE
|
||||
|
||||
data_ls_parser.set_defaults(func=CmdDataLs)
|
||||
@@ -1,8 +1,9 @@
|
||||
import argparse
|
||||
import logging
|
||||
|
||||
from dvc.command import completion
|
||||
from dvc.command.base import CmdBase, append_doc_link
|
||||
from dvc.cli import completion
|
||||
from dvc.cli.command import CmdBase
|
||||
from dvc.cli.utils import append_doc_link
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
@@ -18,7 +19,7 @@ class CmdDataBase(CmdBase):
|
||||
|
||||
class CmdDataPull(CmdDataBase):
|
||||
def log_summary(self, stats):
|
||||
from dvc.command.checkout import log_changes
|
||||
from dvc.commands.checkout import log_changes
|
||||
|
||||
log_changes(stats)
|
||||
super().log_summary(stats)
|
||||
@@ -42,7 +43,8 @@ class CmdDataPull(CmdDataBase):
|
||||
)
|
||||
self.log_summary(stats)
|
||||
except (CheckoutError, DvcException) as exc:
|
||||
self.log_summary(getattr(exc, "stats", {}))
|
||||
if stats := getattr(exc, "stats", {}):
|
||||
self.log_summary(stats)
|
||||
logger.exception("failed to pull data from the cloud")
|
||||
return 1
|
||||
|
||||
@@ -97,7 +99,7 @@ class CmdDataFetch(CmdDataBase):
|
||||
|
||||
|
||||
def shared_parent_parser():
|
||||
from dvc.cli import get_parent_parser
|
||||
from dvc.cli.parser import get_parent_parser
|
||||
|
||||
# Parent parser used in pull/push/status
|
||||
parent_parser = argparse.ArgumentParser(
|
||||
@@ -110,7 +112,6 @@ def shared_parent_parser():
|
||||
help=(
|
||||
"Number of jobs to run simultaneously. "
|
||||
"The default value is 4 * cpu_count(). "
|
||||
"For SSH remotes, the default is 4. "
|
||||
),
|
||||
metavar="<number>",
|
||||
)
|
||||
@@ -127,7 +128,7 @@ def shared_parent_parser():
|
||||
|
||||
|
||||
def add_parser(subparsers, _parent_parser):
|
||||
from dvc.command.status import CmdDataStatus
|
||||
from dvc.commands.status import CmdDataStatus
|
||||
|
||||
# Pull
|
||||
PULL_HELP = "Download tracked files or directories from remote storage."
|
||||
@@ -1,7 +1,8 @@
|
||||
import argparse
|
||||
import logging
|
||||
|
||||
from dvc.command.base import CmdBase, append_doc_link
|
||||
from dvc.cli.command import CmdBase
|
||||
from dvc.cli.utils import append_doc_link
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
@@ -2,8 +2,9 @@ import argparse
|
||||
import logging
|
||||
import os
|
||||
|
||||
from dvc.command import completion
|
||||
from dvc.command.base import CmdBase, append_doc_link
|
||||
from dvc.cli import completion
|
||||
from dvc.cli.command import CmdBase
|
||||
from dvc.cli.utils import append_doc_link
|
||||
from dvc.ui import ui
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
@@ -127,7 +128,7 @@ class CmdDiff(CmdBase):
|
||||
show_hash = self.args.show_hash
|
||||
hide_missing = self.args.b_rev or self.args.hide_missing
|
||||
if hide_missing:
|
||||
del diff["not in cache"]
|
||||
diff.pop("not in cache", None)
|
||||
|
||||
for key, entries in diff.items():
|
||||
entries = sorted(
|
||||
@@ -0,0 +1,103 @@
|
||||
import argparse
|
||||
|
||||
from dvc.cli.utils import (
|
||||
append_doc_link,
|
||||
fix_plumbing_subparsers,
|
||||
fix_subparsers,
|
||||
)
|
||||
from dvc.commands.experiments import (
|
||||
apply,
|
||||
branch,
|
||||
diff,
|
||||
exec_run,
|
||||
gc,
|
||||
init,
|
||||
ls,
|
||||
pull,
|
||||
push,
|
||||
queue_worker,
|
||||
remove,
|
||||
run,
|
||||
show,
|
||||
)
|
||||
|
||||
SUB_COMMANDS = [
|
||||
apply,
|
||||
branch,
|
||||
diff,
|
||||
exec_run,
|
||||
gc,
|
||||
init,
|
||||
ls,
|
||||
pull,
|
||||
push,
|
||||
queue_worker,
|
||||
remove,
|
||||
run,
|
||||
show,
|
||||
]
|
||||
|
||||
|
||||
def add_parser(subparsers, parent_parser):
|
||||
EXPERIMENTS_HELP = "Commands to run and compare experiments."
|
||||
|
||||
experiments_parser = subparsers.add_parser(
|
||||
"experiments",
|
||||
parents=[parent_parser],
|
||||
aliases=["exp"],
|
||||
description=append_doc_link(EXPERIMENTS_HELP, "exp"),
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
help=EXPERIMENTS_HELP,
|
||||
)
|
||||
|
||||
experiments_subparsers = experiments_parser.add_subparsers(
|
||||
dest="cmd",
|
||||
help="Use `dvc experiments CMD --help` to display "
|
||||
"command-specific help.",
|
||||
)
|
||||
|
||||
fix_subparsers(experiments_subparsers)
|
||||
for cmd in SUB_COMMANDS:
|
||||
cmd.add_parser(experiments_subparsers, parent_parser)
|
||||
fix_plumbing_subparsers(experiments_subparsers)
|
||||
|
||||
|
||||
def add_rev_selection_flags(
|
||||
experiments_subcmd_parser, command: str, default: bool = True
|
||||
):
|
||||
experiments_subcmd_parser.add_argument(
|
||||
"-A",
|
||||
"--all-commits",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help=(
|
||||
f"{command} all experiments in the repository "
|
||||
"(overrides `--rev` and `--num`)."
|
||||
),
|
||||
)
|
||||
default_msg = " (HEAD by default)" if default else ""
|
||||
msg = (
|
||||
f"{command} experiments derived from the specified `<commit>` as "
|
||||
f"baseline{default_msg}."
|
||||
)
|
||||
experiments_subcmd_parser.add_argument(
|
||||
"--rev",
|
||||
type=str,
|
||||
default=None,
|
||||
help=msg,
|
||||
metavar="<commit>",
|
||||
)
|
||||
experiments_subcmd_parser.add_argument(
|
||||
"-n",
|
||||
"--num",
|
||||
type=int,
|
||||
default=1,
|
||||
dest="num",
|
||||
metavar="<num>",
|
||||
help=(
|
||||
f"{command} experiments from the last `num` commits "
|
||||
"(first parents) starting from the `--rev` baseline. "
|
||||
"Give a negative value to include all first-parent commits "
|
||||
"(similar to `git log -n`)."
|
||||
),
|
||||
)
|
||||
@@ -0,0 +1,42 @@
|
||||
import argparse
|
||||
import logging
|
||||
|
||||
from dvc.cli import completion
|
||||
from dvc.cli.command import CmdBase
|
||||
from dvc.cli.utils import append_doc_link
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
class CmdExperimentsApply(CmdBase):
|
||||
def run(self):
|
||||
|
||||
self.repo.experiments.apply(
|
||||
self.args.experiment, force=self.args.force
|
||||
)
|
||||
|
||||
return 0
|
||||
|
||||
|
||||
def add_parser(experiments_subparsers, parent_parser):
|
||||
|
||||
EXPERIMENTS_APPLY_HELP = (
|
||||
"Apply the changes from an experiment to your workspace."
|
||||
)
|
||||
experiments_apply_parser = experiments_subparsers.add_parser(
|
||||
"apply",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(EXPERIMENTS_APPLY_HELP, "exp/apply"),
|
||||
help=EXPERIMENTS_APPLY_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
experiments_apply_parser.add_argument(
|
||||
"--no-force",
|
||||
action="store_false",
|
||||
dest="force",
|
||||
help="Fail if this command would overwrite conflicting changes.",
|
||||
)
|
||||
experiments_apply_parser.add_argument(
|
||||
"experiment", help="Experiment to be applied."
|
||||
).complete = completion.EXPERIMENT
|
||||
experiments_apply_parser.set_defaults(func=CmdExperimentsApply)
|
||||
@@ -0,0 +1,34 @@
|
||||
import argparse
|
||||
import logging
|
||||
|
||||
from dvc.cli.command import CmdBase
|
||||
from dvc.cli.utils import append_doc_link
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
class CmdExperimentsBranch(CmdBase):
|
||||
def run(self):
|
||||
|
||||
self.repo.experiments.branch(self.args.experiment, self.args.branch)
|
||||
|
||||
return 0
|
||||
|
||||
|
||||
def add_parser(experiments_subparsers, parent_parser):
|
||||
|
||||
EXPERIMENTS_BRANCH_HELP = "Promote an experiment to a Git branch."
|
||||
experiments_branch_parser = experiments_subparsers.add_parser(
|
||||
"branch",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(EXPERIMENTS_BRANCH_HELP, "exp/branch"),
|
||||
help=EXPERIMENTS_BRANCH_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
experiments_branch_parser.add_argument(
|
||||
"experiment", help="Experiment to be promoted."
|
||||
)
|
||||
experiments_branch_parser.add_argument(
|
||||
"branch", help="Name for the new Git branch"
|
||||
)
|
||||
experiments_branch_parser.set_defaults(func=CmdExperimentsBranch)
|
||||
@@ -0,0 +1,118 @@
|
||||
import argparse
|
||||
import logging
|
||||
|
||||
from dvc.cli import completion
|
||||
from dvc.cli.command import CmdBase
|
||||
from dvc.cli.utils import append_doc_link
|
||||
from dvc.commands.metrics import DEFAULT_PRECISION
|
||||
from dvc.exceptions import DvcException
|
||||
from dvc.ui import ui
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
class CmdExperimentsDiff(CmdBase):
|
||||
def run(self):
|
||||
|
||||
try:
|
||||
diff = self.repo.experiments.diff(
|
||||
a_rev=self.args.a_rev,
|
||||
b_rev=self.args.b_rev,
|
||||
all=self.args.all,
|
||||
param_deps=self.args.param_deps,
|
||||
)
|
||||
except DvcException:
|
||||
logger.exception("failed to show experiments diff")
|
||||
return 1
|
||||
|
||||
if self.args.json:
|
||||
ui.write_json(diff)
|
||||
elif diff:
|
||||
from dvc.compare import show_diff
|
||||
|
||||
precision = self.args.precision or DEFAULT_PRECISION
|
||||
diffs = [("metrics", "Metric"), ("params", "Param")]
|
||||
for idx, (key, title) in enumerate(diffs):
|
||||
if idx:
|
||||
# we are printing tables even in `--quiet` mode
|
||||
# so we should also be printing the "table" separator
|
||||
ui.write(force=True)
|
||||
|
||||
show_diff(
|
||||
diff[key],
|
||||
title=title,
|
||||
markdown=self.args.markdown,
|
||||
no_path=self.args.no_path,
|
||||
on_empty_diff="diff not supported",
|
||||
precision=precision if key == "metrics" else None,
|
||||
a_rev=self.args.a_rev,
|
||||
b_rev=self.args.b_rev,
|
||||
)
|
||||
|
||||
return 0
|
||||
|
||||
|
||||
def add_parser(experiments_subparsers, parent_parser):
|
||||
|
||||
EXPERIMENTS_DIFF_HELP = (
|
||||
"Show changes between experiments in the DVC repository."
|
||||
)
|
||||
|
||||
experiments_diff_parser = experiments_subparsers.add_parser(
|
||||
"diff",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(EXPERIMENTS_DIFF_HELP, "exp/diff"),
|
||||
help=EXPERIMENTS_DIFF_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
experiments_diff_parser.add_argument(
|
||||
"a_rev", nargs="?", help="Old experiment to compare (defaults to HEAD)"
|
||||
).complete = completion.EXPERIMENT
|
||||
experiments_diff_parser.add_argument(
|
||||
"b_rev",
|
||||
nargs="?",
|
||||
help="New experiment to compare (defaults to the current workspace)",
|
||||
).complete = completion.EXPERIMENT
|
||||
experiments_diff_parser.add_argument(
|
||||
"--all",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Show unchanged metrics/params as well.",
|
||||
)
|
||||
experiments_diff_parser.add_argument(
|
||||
"--param-deps",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Show only params that are stage dependencies.",
|
||||
)
|
||||
experiments_diff_parser.add_argument(
|
||||
"--json",
|
||||
"--show-json",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Show output in JSON format.",
|
||||
)
|
||||
experiments_diff_parser.add_argument(
|
||||
"--md",
|
||||
"--show-md",
|
||||
action="store_true",
|
||||
default=False,
|
||||
dest="markdown",
|
||||
help="Show tabulated output in the Markdown format (GFM).",
|
||||
)
|
||||
experiments_diff_parser.add_argument(
|
||||
"--no-path",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Don't show metric/param path.",
|
||||
)
|
||||
experiments_diff_parser.add_argument(
|
||||
"--precision",
|
||||
type=int,
|
||||
help=(
|
||||
"Round metrics/params to `n` digits precision after the decimal "
|
||||
f"point. Rounds to {DEFAULT_PRECISION} digits by default."
|
||||
),
|
||||
metavar="<n>",
|
||||
)
|
||||
experiments_diff_parser.set_defaults(func=CmdExperimentsDiff)
|
||||
@@ -0,0 +1,42 @@
|
||||
import logging
|
||||
|
||||
from dvc.cli.command import CmdBaseNoRepo
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
class CmdExecutorRun(CmdBaseNoRepo):
|
||||
"""Run an experiment executor."""
|
||||
|
||||
def run(self):
|
||||
from dvc.repo.experiments.executor.base import (
|
||||
BaseExecutor,
|
||||
ExecutorInfo,
|
||||
)
|
||||
from dvc.utils.serialize import load_json
|
||||
|
||||
info = ExecutorInfo.from_dict(load_json(self.args.infofile))
|
||||
BaseExecutor.reproduce(
|
||||
info=info,
|
||||
rev="",
|
||||
queue=None,
|
||||
log_level=logger.getEffectiveLevel(),
|
||||
infofile=self.args.infofile,
|
||||
)
|
||||
return 0
|
||||
|
||||
|
||||
def add_parser(experiments_subparsers, parent_parser):
|
||||
EXEC_RUN_HELP = "Run an experiment executor."
|
||||
exec_run_parser = experiments_subparsers.add_parser(
|
||||
"exec-run",
|
||||
parents=[parent_parser],
|
||||
description=EXEC_RUN_HELP,
|
||||
add_help=False,
|
||||
)
|
||||
exec_run_parser.add_argument(
|
||||
"--infofile",
|
||||
help="Path to executor info file",
|
||||
default=None,
|
||||
)
|
||||
exec_run_parser.set_defaults(func=CmdExecutorRun)
|
||||
@@ -0,0 +1,150 @@
|
||||
import argparse
|
||||
import logging
|
||||
|
||||
from dvc.cli.command import CmdBase
|
||||
from dvc.cli.utils import append_doc_link
|
||||
from dvc.exceptions import InvalidArgumentError
|
||||
from dvc.ui import ui
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
def _raise_error_if_all_disabled(**kwargs):
|
||||
if not any(kwargs.values()):
|
||||
raise InvalidArgumentError(
|
||||
"Either of `-w|--workspace`, `-a|--all-branches`, `-T|--all-tags`,"
|
||||
" `--all-commits` or `--date` needs to be set."
|
||||
)
|
||||
|
||||
|
||||
class CmdExperimentsGC(CmdBase):
|
||||
def run(self):
|
||||
_raise_error_if_all_disabled(
|
||||
all_branches=self.args.all_branches,
|
||||
all_tags=self.args.all_tags,
|
||||
all_commits=self.args.all_commits,
|
||||
commit_date=self.args.commit_date,
|
||||
workspace=self.args.workspace,
|
||||
)
|
||||
|
||||
msg = "This will remove all experiments except those derived from "
|
||||
|
||||
msg += "the workspace"
|
||||
if self.args.all_commits:
|
||||
msg += " and all git commits"
|
||||
else:
|
||||
if self.args.all_branches and self.args.all_tags:
|
||||
msg += " and all git branches and tags"
|
||||
elif self.args.all_branches:
|
||||
msg += " and all git branches"
|
||||
elif self.args.all_tags:
|
||||
msg += " and all git tags"
|
||||
|
||||
if self.args.commit_date:
|
||||
msg += (
|
||||
" and all git commits before date "
|
||||
f"{self.args.commit_date}"
|
||||
)
|
||||
msg += " of the current repo."
|
||||
|
||||
if self.args.queued:
|
||||
msg += " Run queued experiments will be preserved."
|
||||
else:
|
||||
msg += " Run queued experiments will be removed."
|
||||
|
||||
logger.warning(msg)
|
||||
|
||||
msg = "Are you sure you want to proceed?"
|
||||
if not self.args.force and not ui.confirm(msg):
|
||||
return 1
|
||||
|
||||
removed = self.repo.experiments.gc(
|
||||
all_branches=self.args.all_branches,
|
||||
all_tags=self.args.all_tags,
|
||||
all_commits=self.args.all_commits,
|
||||
workspace=self.args.workspace,
|
||||
commit_date=self.args.commit_date,
|
||||
queued=self.args.queued,
|
||||
)
|
||||
|
||||
if removed:
|
||||
ui.write(
|
||||
f"Removed {removed} experiments.",
|
||||
"To remove unused cache files",
|
||||
"use 'dvc gc'.",
|
||||
)
|
||||
else:
|
||||
ui.write("No experiments to remove.")
|
||||
return 0
|
||||
|
||||
|
||||
def add_parser(experiments_subparsers, parent_parser):
|
||||
|
||||
EXPERIMENTS_GC_HELP = "Garbage collect unneeded experiments."
|
||||
EXPERIMENTS_GC_DESCRIPTION = (
|
||||
"Removes all experiments which are not derived from the specified"
|
||||
"Git revisions."
|
||||
)
|
||||
experiments_gc_parser = experiments_subparsers.add_parser(
|
||||
"gc",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(EXPERIMENTS_GC_DESCRIPTION, "exp/gc"),
|
||||
help=EXPERIMENTS_GC_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
experiments_gc_parser.add_argument(
|
||||
"-w",
|
||||
"--workspace",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Keep experiments derived from the current workspace.",
|
||||
)
|
||||
experiments_gc_parser.add_argument(
|
||||
"-a",
|
||||
"--all-branches",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Keep experiments derived from the tips of all Git branches.",
|
||||
)
|
||||
experiments_gc_parser.add_argument(
|
||||
"-T",
|
||||
"--all-tags",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Keep experiments derived from all Git tags.",
|
||||
)
|
||||
experiments_gc_parser.add_argument(
|
||||
"-A",
|
||||
"--all-commits",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Keep experiments derived from all Git commits.",
|
||||
)
|
||||
experiments_gc_parser.add_argument(
|
||||
"--date",
|
||||
type=str,
|
||||
dest="commit_date",
|
||||
metavar="<YYYY-MM-DD>",
|
||||
default=None,
|
||||
help=(
|
||||
"Keep experiments from the commits after (inclusive) a certain "
|
||||
"date. Date must match the extended ISO 8601 format (YYYY-MM-DD)."
|
||||
),
|
||||
)
|
||||
experiments_gc_parser.add_argument(
|
||||
"--queued",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help=(
|
||||
"Keep queued experiments (experiments run queue will be cleared "
|
||||
"by default)."
|
||||
),
|
||||
)
|
||||
experiments_gc_parser.add_argument(
|
||||
"-f",
|
||||
"--force",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Force garbage collection - automatically agree to all prompts.",
|
||||
)
|
||||
experiments_gc_parser.set_defaults(func=CmdExperimentsGC)
|
||||
@@ -0,0 +1,210 @@
|
||||
import argparse
|
||||
import logging
|
||||
from typing import TYPE_CHECKING, List
|
||||
|
||||
from funcy import compact
|
||||
|
||||
from dvc.cli.command import CmdBase
|
||||
from dvc.cli.utils import append_doc_link
|
||||
from dvc.exceptions import InvalidArgumentError
|
||||
from dvc.ui import ui
|
||||
|
||||
if TYPE_CHECKING:
|
||||
from dvc.dependency import Dependency
|
||||
from dvc.stage import PipelineStage
|
||||
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
class CmdExperimentsInit(CmdBase):
|
||||
DEFAULT_NAME = "train"
|
||||
CODE = "src"
|
||||
DATA = "data"
|
||||
MODELS = "models"
|
||||
DEFAULT_METRICS = "metrics.json"
|
||||
DEFAULT_PARAMS = "params.yaml"
|
||||
PLOTS = "plots"
|
||||
DEFAULTS = {
|
||||
"code": CODE,
|
||||
"data": DATA,
|
||||
"models": MODELS,
|
||||
"metrics": DEFAULT_METRICS,
|
||||
"params": DEFAULT_PARAMS,
|
||||
"plots": PLOTS,
|
||||
}
|
||||
|
||||
def run(self):
|
||||
from dvc.commands.stage import parse_cmd
|
||||
|
||||
cmd = parse_cmd(self.args.command)
|
||||
if not self.args.interactive and not cmd:
|
||||
raise InvalidArgumentError("command is not specified")
|
||||
|
||||
from dvc.repo.experiments.init import init
|
||||
|
||||
defaults = {}
|
||||
if not self.args.explicit:
|
||||
config = self.repo.config["exp"]
|
||||
defaults.update({**self.DEFAULTS, **config})
|
||||
|
||||
cli_args = compact(
|
||||
{
|
||||
"cmd": cmd,
|
||||
"code": self.args.code,
|
||||
"data": self.args.data,
|
||||
"models": self.args.models,
|
||||
"metrics": self.args.metrics,
|
||||
"params": self.args.params,
|
||||
"plots": self.args.plots,
|
||||
"live": self.args.live,
|
||||
}
|
||||
)
|
||||
|
||||
initialized_stage, initialized_deps, initialized_out_dirs = init(
|
||||
self.repo,
|
||||
name=self.args.name,
|
||||
type=self.args.type,
|
||||
defaults=defaults,
|
||||
overrides=cli_args,
|
||||
interactive=self.args.interactive,
|
||||
force=self.args.force,
|
||||
)
|
||||
self._post_init_display(
|
||||
initialized_stage, initialized_deps, initialized_out_dirs
|
||||
)
|
||||
if self.args.run:
|
||||
self.repo.experiments.run(targets=[initialized_stage.addressing])
|
||||
return 0
|
||||
|
||||
def _post_init_display(
|
||||
self,
|
||||
stage: "PipelineStage",
|
||||
new_deps: List["Dependency"],
|
||||
new_out_dirs: List[str],
|
||||
) -> None:
|
||||
from dvc.utils import humanize
|
||||
|
||||
path_fmt = "[green]{}[/green]".format
|
||||
if new_deps:
|
||||
deps_paths = humanize.join(map(path_fmt, new_deps))
|
||||
ui.write(f"Creating dependencies: {deps_paths}", styled=True)
|
||||
|
||||
if new_out_dirs:
|
||||
out_dirs_paths = humanize.join(map(path_fmt, new_out_dirs))
|
||||
ui.write(
|
||||
f"Creating output directories: {out_dirs_paths}", styled=True
|
||||
)
|
||||
|
||||
ui.write(
|
||||
f"Creating [b]{self.args.name}[/b] stage in [green]dvc.yaml[/]",
|
||||
styled=True,
|
||||
)
|
||||
if stage.outs or not self.args.run:
|
||||
# separate the above status-like messages with help/tips section
|
||||
ui.write(styled=True)
|
||||
|
||||
if stage.outs:
|
||||
outs_paths = humanize.join(map(path_fmt, stage.outs))
|
||||
tips = f"Ensure your experiment command creates {outs_paths}."
|
||||
ui.write(tips, styled=True)
|
||||
|
||||
if not self.args.run:
|
||||
ui.write(
|
||||
'You can now run your experiment using [b]"dvc exp run"[/].',
|
||||
styled=True,
|
||||
)
|
||||
else:
|
||||
# separate between `exp.run` output and `dvc exp init` output
|
||||
ui.write(styled=True)
|
||||
|
||||
|
||||
def add_parser(experiments_subparsers, parent_parser):
|
||||
|
||||
EXPERIMENTS_INIT_HELP = "Quickly setup any project to use experiments."
|
||||
experiments_init_parser = experiments_subparsers.add_parser(
|
||||
"init",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(EXPERIMENTS_INIT_HELP, "exp/init"),
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
help=EXPERIMENTS_INIT_HELP,
|
||||
)
|
||||
experiments_init_parser.add_argument(
|
||||
"command",
|
||||
nargs=argparse.REMAINDER,
|
||||
help="Command to execute.",
|
||||
metavar="command",
|
||||
)
|
||||
experiments_init_parser.add_argument(
|
||||
"--run",
|
||||
action="store_true",
|
||||
help="Run the experiment after initializing it",
|
||||
)
|
||||
experiments_init_parser.add_argument(
|
||||
"--interactive",
|
||||
"-i",
|
||||
action="store_true",
|
||||
help="Prompt for values that are not provided",
|
||||
)
|
||||
experiments_init_parser.add_argument(
|
||||
"-f",
|
||||
"--force",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Overwrite existing stage",
|
||||
)
|
||||
experiments_init_parser.add_argument(
|
||||
"--explicit",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Only use the path values explicitly provided",
|
||||
)
|
||||
experiments_init_parser.add_argument(
|
||||
"--name",
|
||||
"-n",
|
||||
help="Name of the stage to create (default: %(default)s)",
|
||||
default=CmdExperimentsInit.DEFAULT_NAME,
|
||||
)
|
||||
experiments_init_parser.add_argument(
|
||||
"--code",
|
||||
help="Path to the source file or directory "
|
||||
"which your experiments depend"
|
||||
f" (default: {CmdExperimentsInit.CODE})",
|
||||
)
|
||||
experiments_init_parser.add_argument(
|
||||
"--data",
|
||||
help="Path to the data file or directory "
|
||||
"which your experiments depend"
|
||||
f" (default: {CmdExperimentsInit.DATA})",
|
||||
)
|
||||
experiments_init_parser.add_argument(
|
||||
"--models",
|
||||
help="Path to the model file or directory for your experiments"
|
||||
f" (default: {CmdExperimentsInit.MODELS})",
|
||||
)
|
||||
experiments_init_parser.add_argument(
|
||||
"--params",
|
||||
help="Path to the parameters file for your experiments"
|
||||
f" (default: {CmdExperimentsInit.DEFAULT_PARAMS})",
|
||||
)
|
||||
experiments_init_parser.add_argument(
|
||||
"--metrics",
|
||||
help="Path to the metrics file for your experiments"
|
||||
f" (default: {CmdExperimentsInit.DEFAULT_METRICS})",
|
||||
)
|
||||
experiments_init_parser.add_argument(
|
||||
"--plots",
|
||||
help="Path to the plots file or directory for your experiments"
|
||||
f" (default: {CmdExperimentsInit.PLOTS})",
|
||||
)
|
||||
experiments_init_parser.add_argument(
|
||||
"--live",
|
||||
help="Path to log dvclive outputs for your experiments",
|
||||
)
|
||||
experiments_init_parser.add_argument(
|
||||
"--type",
|
||||
choices=["default", "checkpoint"],
|
||||
default="default",
|
||||
help="Select type of stage to create (default: %(default)s)",
|
||||
)
|
||||
experiments_init_parser.set_defaults(func=CmdExperimentsInit)
|
||||
@@ -0,0 +1,64 @@
|
||||
import argparse
|
||||
import logging
|
||||
|
||||
from dvc.cli.command import CmdBase
|
||||
from dvc.cli.utils import append_doc_link
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
class CmdExperimentsList(CmdBase):
|
||||
def run(self):
|
||||
name_only = self.args.name_only
|
||||
exps = self.repo.experiments.ls(
|
||||
all_commits=self.args.all_commits,
|
||||
rev=self.args.rev,
|
||||
num=self.args.num,
|
||||
git_remote=self.args.git_remote,
|
||||
)
|
||||
for baseline in exps:
|
||||
tag = self.repo.scm.describe(baseline)
|
||||
if not tag:
|
||||
branch = self.repo.scm.describe(baseline, base="refs/heads")
|
||||
if branch:
|
||||
tag = branch.split("/")[-1]
|
||||
name = tag if tag else baseline[:7]
|
||||
if not name_only:
|
||||
print(f"{name}:")
|
||||
for exp_name in exps[baseline]:
|
||||
indent = "" if name_only else "\t"
|
||||
print(f"{indent}{exp_name}")
|
||||
|
||||
return 0
|
||||
|
||||
|
||||
def add_parser(experiments_subparsers, parent_parser):
|
||||
from . import add_rev_selection_flags
|
||||
|
||||
EXPERIMENTS_LIST_HELP = "List local and remote experiments."
|
||||
experiments_list_parser = experiments_subparsers.add_parser(
|
||||
"list",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(EXPERIMENTS_LIST_HELP, "exp/list"),
|
||||
help=EXPERIMENTS_LIST_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
add_rev_selection_flags(experiments_list_parser, "List")
|
||||
experiments_list_parser.add_argument(
|
||||
"--name-only",
|
||||
"--names-only",
|
||||
action="store_true",
|
||||
help="Only output experiment names (without parent commits).",
|
||||
)
|
||||
experiments_list_parser.add_argument(
|
||||
"git_remote",
|
||||
nargs="?",
|
||||
default=None,
|
||||
help=(
|
||||
"Optional Git remote name or Git URL. "
|
||||
"If provided, experiments from the specified Git repository "
|
||||
" will be listed instead of local ones."
|
||||
),
|
||||
metavar="<git_remote>",
|
||||
)
|
||||
experiments_list_parser.set_defaults(func=CmdExperimentsList)
|
||||
@@ -0,0 +1,117 @@
|
||||
import argparse
|
||||
import logging
|
||||
|
||||
from dvc.cli.command import CmdBase
|
||||
from dvc.cli.utils import append_doc_link
|
||||
from dvc.exceptions import InvalidArgumentError
|
||||
from dvc.ui import ui
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
class CmdExperimentsPull(CmdBase):
|
||||
def raise_error_if_all_disabled(self):
|
||||
if not any(
|
||||
[self.args.experiment, self.args.all_commits, self.args.rev]
|
||||
):
|
||||
raise InvalidArgumentError(
|
||||
"Either provide an `experiment` argument, or use the "
|
||||
"`--rev` or `--all-commits` flag."
|
||||
)
|
||||
|
||||
def run(self):
|
||||
self.raise_error_if_all_disabled()
|
||||
|
||||
pulled_exps = self.repo.experiments.pull(
|
||||
self.args.git_remote,
|
||||
self.args.experiment,
|
||||
all_commits=self.args.all_commits,
|
||||
rev=self.args.rev,
|
||||
num=self.args.num,
|
||||
force=self.args.force,
|
||||
pull_cache=self.args.pull_cache,
|
||||
dvc_remote=self.args.dvc_remote,
|
||||
jobs=self.args.jobs,
|
||||
run_cache=self.args.run_cache,
|
||||
)
|
||||
|
||||
if pulled_exps:
|
||||
ui.write(
|
||||
f"Pulled experiment '{pulled_exps}'",
|
||||
f"from Git remote '{self.args.git_remote}'.",
|
||||
)
|
||||
else:
|
||||
ui.write("No experiments to pull.")
|
||||
if not self.args.pull_cache:
|
||||
ui.write(
|
||||
"To pull cached outputs for this experiment"
|
||||
"from DVC remote storage,"
|
||||
"re-run this command without '--no-cache'."
|
||||
)
|
||||
|
||||
return 0
|
||||
|
||||
|
||||
def add_parser(experiments_subparsers, parent_parser):
|
||||
from . import add_rev_selection_flags
|
||||
|
||||
EXPERIMENTS_PULL_HELP = "Pull an experiment from a Git remote."
|
||||
experiments_pull_parser = experiments_subparsers.add_parser(
|
||||
"pull",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(EXPERIMENTS_PULL_HELP, "exp/pull"),
|
||||
help=EXPERIMENTS_PULL_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
add_rev_selection_flags(experiments_pull_parser, "Pull", False)
|
||||
experiments_pull_parser.add_argument(
|
||||
"-f",
|
||||
"--force",
|
||||
action="store_true",
|
||||
help="Replace local experiment already exists.",
|
||||
)
|
||||
experiments_pull_parser.add_argument(
|
||||
"--no-cache",
|
||||
action="store_false",
|
||||
dest="pull_cache",
|
||||
help=(
|
||||
"Do not pull cached outputs for this experiment from DVC remote "
|
||||
"storage."
|
||||
),
|
||||
)
|
||||
experiments_pull_parser.add_argument(
|
||||
"-r",
|
||||
"--remote",
|
||||
dest="dvc_remote",
|
||||
metavar="<name>",
|
||||
help="Name of the DVC remote to use when pulling cached outputs.",
|
||||
)
|
||||
experiments_pull_parser.add_argument(
|
||||
"-j",
|
||||
"--jobs",
|
||||
type=int,
|
||||
metavar="<number>",
|
||||
help=(
|
||||
"Number of jobs to run simultaneously when pulling from DVC "
|
||||
"remote storage."
|
||||
),
|
||||
)
|
||||
experiments_pull_parser.add_argument(
|
||||
"--run-cache",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Pull run history for all stages.",
|
||||
)
|
||||
experiments_pull_parser.add_argument(
|
||||
"git_remote",
|
||||
help="Git remote name or Git URL.",
|
||||
metavar="<git_remote>",
|
||||
)
|
||||
experiments_pull_parser.add_argument(
|
||||
"experiment",
|
||||
nargs="*",
|
||||
default=None,
|
||||
help="Experiments to pull.",
|
||||
metavar="<experiment>",
|
||||
)
|
||||
experiments_pull_parser.set_defaults(func=CmdExperimentsPull)
|
||||
@@ -0,0 +1,119 @@
|
||||
import argparse
|
||||
import logging
|
||||
|
||||
from dvc.cli import completion
|
||||
from dvc.cli.command import CmdBase
|
||||
from dvc.cli.utils import append_doc_link
|
||||
from dvc.exceptions import InvalidArgumentError
|
||||
from dvc.ui import ui
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
class CmdExperimentsPush(CmdBase):
|
||||
def raise_error_if_all_disabled(self):
|
||||
if not any(
|
||||
[self.args.experiment, self.args.all_commits, self.args.rev]
|
||||
):
|
||||
raise InvalidArgumentError(
|
||||
"Either provide an `experiment` argument, or use the "
|
||||
"`--rev` or `--all-commits` flag."
|
||||
)
|
||||
|
||||
def run(self):
|
||||
|
||||
self.raise_error_if_all_disabled()
|
||||
|
||||
pushed_exps = self.repo.experiments.push(
|
||||
self.args.git_remote,
|
||||
self.args.experiment,
|
||||
all_commits=self.args.all_commits,
|
||||
rev=self.args.rev,
|
||||
num=self.args.num,
|
||||
force=self.args.force,
|
||||
push_cache=self.args.push_cache,
|
||||
dvc_remote=self.args.dvc_remote,
|
||||
jobs=self.args.jobs,
|
||||
run_cache=self.args.run_cache,
|
||||
)
|
||||
|
||||
if pushed_exps:
|
||||
ui.write(
|
||||
f"Pushed experiment '{pushed_exps}'"
|
||||
f"to Git remote '{self.args.git_remote}'."
|
||||
)
|
||||
else:
|
||||
ui.write("No experiments to push.")
|
||||
if not self.args.push_cache:
|
||||
ui.write(
|
||||
"To push cached outputs",
|
||||
"for this experiment to DVC remote storage,"
|
||||
"re-run this command without '--no-cache'.",
|
||||
)
|
||||
|
||||
return 0
|
||||
|
||||
|
||||
def add_parser(experiments_subparsers, parent_parser):
|
||||
from . import add_rev_selection_flags
|
||||
|
||||
EXPERIMENTS_PUSH_HELP = "Push a local experiment to a Git remote."
|
||||
experiments_push_parser = experiments_subparsers.add_parser(
|
||||
"push",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(EXPERIMENTS_PUSH_HELP, "exp/push"),
|
||||
help=EXPERIMENTS_PUSH_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
add_rev_selection_flags(experiments_push_parser, "Push", False)
|
||||
experiments_push_parser.add_argument(
|
||||
"-f",
|
||||
"--force",
|
||||
action="store_true",
|
||||
help="Replace experiment in the Git remote if it already exists.",
|
||||
)
|
||||
experiments_push_parser.add_argument(
|
||||
"--no-cache",
|
||||
action="store_false",
|
||||
dest="push_cache",
|
||||
help=(
|
||||
"Do not push cached outputs for this experiment to DVC remote "
|
||||
"storage."
|
||||
),
|
||||
)
|
||||
experiments_push_parser.add_argument(
|
||||
"-r",
|
||||
"--remote",
|
||||
dest="dvc_remote",
|
||||
metavar="<name>",
|
||||
help="Name of the DVC remote to use when pushing cached outputs.",
|
||||
)
|
||||
experiments_push_parser.add_argument(
|
||||
"-j",
|
||||
"--jobs",
|
||||
type=int,
|
||||
metavar="<number>",
|
||||
help=(
|
||||
"Number of jobs to run simultaneously when pushing to DVC remote "
|
||||
"storage."
|
||||
),
|
||||
)
|
||||
experiments_push_parser.add_argument(
|
||||
"--run-cache",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Push run history for all stages.",
|
||||
)
|
||||
experiments_push_parser.add_argument(
|
||||
"git_remote",
|
||||
help="Git remote name or Git URL.",
|
||||
metavar="<git_remote>",
|
||||
)
|
||||
experiments_push_parser.add_argument(
|
||||
"experiment",
|
||||
nargs="*",
|
||||
default=None,
|
||||
help="Experiments to push.",
|
||||
metavar="<experiment>",
|
||||
).complete = completion.EXPERIMENT
|
||||
experiments_push_parser.set_defaults(func=CmdExperimentsPush)
|
||||
@@ -0,0 +1,25 @@
|
||||
import logging
|
||||
|
||||
from dvc.cli.command import CmdBase
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
class CmdQueueWorker(CmdBase):
|
||||
"""Run the exp queue worker."""
|
||||
|
||||
def run(self):
|
||||
self.repo.experiments.celery_queue.worker.start(self.args.name)
|
||||
return 0
|
||||
|
||||
|
||||
def add_parser(experiments_subparsers, parent_parser):
|
||||
QUEUE_WORKER_HELP = "Run the exp queue worker."
|
||||
parser = experiments_subparsers.add_parser(
|
||||
"queue-worker",
|
||||
parents=[parent_parser],
|
||||
description=QUEUE_WORKER_HELP,
|
||||
add_help=False,
|
||||
)
|
||||
parser.add_argument("name", help="Celery worker name.")
|
||||
parser.set_defaults(func=CmdQueueWorker)
|
||||
@@ -0,0 +1,72 @@
|
||||
import argparse
|
||||
import logging
|
||||
|
||||
from dvc.cli.command import CmdBase
|
||||
from dvc.cli.utils import append_doc_link
|
||||
from dvc.exceptions import InvalidArgumentError
|
||||
from dvc.ui import ui
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
class CmdExperimentsRemove(CmdBase):
|
||||
def check_arguments(self):
|
||||
if not any(
|
||||
[
|
||||
self.args.all_commits,
|
||||
self.args.rev,
|
||||
self.args.queue,
|
||||
]
|
||||
) ^ bool(self.args.experiment):
|
||||
raise InvalidArgumentError(
|
||||
"Either provide an `experiment` argument, or use the "
|
||||
"`--rev` or `--all-commits` or `--queue` flag."
|
||||
)
|
||||
|
||||
def run(self):
|
||||
|
||||
self.check_arguments()
|
||||
|
||||
removed_list = self.repo.experiments.remove(
|
||||
exp_names=self.args.experiment,
|
||||
all_commits=self.args.all_commits,
|
||||
rev=self.args.rev,
|
||||
num=self.args.num,
|
||||
queue=self.args.queue,
|
||||
git_remote=self.args.git_remote,
|
||||
)
|
||||
removed = ",".join(removed_list)
|
||||
ui.write(f"Removed experiments: {removed}")
|
||||
|
||||
return 0
|
||||
|
||||
|
||||
def add_parser(experiments_subparsers, parent_parser):
|
||||
from . import add_rev_selection_flags
|
||||
|
||||
EXPERIMENTS_REMOVE_HELP = "Remove experiments."
|
||||
experiments_remove_parser = experiments_subparsers.add_parser(
|
||||
"remove",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(EXPERIMENTS_REMOVE_HELP, "exp/remove"),
|
||||
help=EXPERIMENTS_REMOVE_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
remove_group = experiments_remove_parser.add_mutually_exclusive_group()
|
||||
add_rev_selection_flags(experiments_remove_parser, "Remove", False)
|
||||
remove_group.add_argument(
|
||||
"--queue", action="store_true", help="Remove all queued experiments."
|
||||
)
|
||||
remove_group.add_argument(
|
||||
"-g",
|
||||
"--git-remote",
|
||||
metavar="<git_remote>",
|
||||
help="Name or URL of the Git remote to remove the experiment from",
|
||||
)
|
||||
experiments_remove_parser.add_argument(
|
||||
"experiment",
|
||||
nargs="*",
|
||||
help="Experiments to remove.",
|
||||
metavar="<experiment>",
|
||||
)
|
||||
experiments_remove_parser.set_defaults(func=CmdExperimentsRemove)
|
||||
@@ -0,0 +1,142 @@
|
||||
import argparse
|
||||
import logging
|
||||
|
||||
from dvc.cli import completion
|
||||
from dvc.cli.utils import append_doc_link
|
||||
from dvc.commands.repro import CmdRepro
|
||||
from dvc.commands.repro import add_arguments as add_repro_arguments
|
||||
from dvc.exceptions import InvalidArgumentError
|
||||
from dvc.ui import ui
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
class CmdExperimentsRun(CmdRepro):
|
||||
def run(self):
|
||||
from dvc.compare import show_metrics
|
||||
|
||||
if self.args.checkpoint_resume:
|
||||
if self.args.reset:
|
||||
raise InvalidArgumentError(
|
||||
"--reset and --rev are mutually exclusive."
|
||||
)
|
||||
if not (self.args.queue or self.args.tmp_dir):
|
||||
raise InvalidArgumentError(
|
||||
"--rev can only be used in conjunction with "
|
||||
"--queue or --temp."
|
||||
)
|
||||
|
||||
if self.args.reset:
|
||||
ui.write("Any existing checkpoints will be reset and re-run.")
|
||||
|
||||
results = self.repo.experiments.run(
|
||||
name=self.args.name,
|
||||
queue=self.args.queue,
|
||||
run_all=self.args.run_all,
|
||||
jobs=self.args.jobs,
|
||||
params=self.args.set_param,
|
||||
checkpoint_resume=self.args.checkpoint_resume,
|
||||
reset=self.args.reset,
|
||||
tmp_dir=self.args.tmp_dir,
|
||||
machine=self.args.machine,
|
||||
**self._common_kwargs,
|
||||
)
|
||||
|
||||
if self.args.metrics and results:
|
||||
metrics = self.repo.metrics.show(revs=list(results))
|
||||
metrics.pop("workspace", None)
|
||||
show_metrics(metrics)
|
||||
|
||||
return 0
|
||||
|
||||
|
||||
def add_parser(experiments_subparsers, parent_parser):
|
||||
|
||||
EXPERIMENTS_RUN_HELP = "Run or resume an experiment."
|
||||
experiments_run_parser = experiments_subparsers.add_parser(
|
||||
"run",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(EXPERIMENTS_RUN_HELP, "exp/run"),
|
||||
help=EXPERIMENTS_RUN_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
_add_run_common(experiments_run_parser)
|
||||
experiments_run_parser.add_argument(
|
||||
"-r",
|
||||
"--rev",
|
||||
type=str,
|
||||
dest="checkpoint_resume",
|
||||
help=(
|
||||
"Continue the specified checkpoint experiment. Can only be used "
|
||||
"in conjunction with --queue or --temp."
|
||||
),
|
||||
metavar="<experiment_rev>",
|
||||
).complete = completion.EXPERIMENT
|
||||
experiments_run_parser.add_argument(
|
||||
"--reset",
|
||||
action="store_true",
|
||||
help="Reset existing checkpoints and restart the experiment.",
|
||||
)
|
||||
experiments_run_parser.set_defaults(func=CmdExperimentsRun)
|
||||
|
||||
|
||||
def _add_run_common(parser):
|
||||
"""Add common args for 'exp run'."""
|
||||
# inherit arguments from `dvc repro`
|
||||
add_repro_arguments(parser)
|
||||
parser.add_argument(
|
||||
"-n",
|
||||
"--name",
|
||||
default=None,
|
||||
help=(
|
||||
"Human-readable experiment name. If not specified, a name will "
|
||||
"be auto-generated."
|
||||
),
|
||||
metavar="<name>",
|
||||
)
|
||||
parser.add_argument(
|
||||
"-S",
|
||||
"--set-param",
|
||||
action="append",
|
||||
default=[],
|
||||
help="Use the specified param value when reproducing pipelines.",
|
||||
metavar="[<filename>:]<param_name>=<param_value>",
|
||||
)
|
||||
parser.add_argument(
|
||||
"--queue",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Stage this experiment in the run queue for future execution.",
|
||||
)
|
||||
parser.add_argument(
|
||||
"--run-all",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Execute all experiments in the run queue. Implies --temp.",
|
||||
)
|
||||
parser.add_argument(
|
||||
"-j",
|
||||
"--jobs",
|
||||
type=int,
|
||||
default=1,
|
||||
help="Run the specified number of experiments at a time in parallel.",
|
||||
metavar="<number>",
|
||||
)
|
||||
parser.add_argument(
|
||||
"--temp",
|
||||
action="store_true",
|
||||
dest="tmp_dir",
|
||||
help=(
|
||||
"Run this experiment in a separate temporary directory instead of "
|
||||
"your workspace."
|
||||
),
|
||||
)
|
||||
parser.add_argument(
|
||||
"--machine",
|
||||
default=None,
|
||||
help=argparse.SUPPRESS,
|
||||
# help=(
|
||||
# "Run this experiment on the specified 'dvc machine' instance."
|
||||
# )
|
||||
# metavar="<name>",
|
||||
)
|
||||
@@ -0,0 +1,655 @@
|
||||
import argparse
|
||||
import logging
|
||||
import os
|
||||
import re
|
||||
from collections import Counter, OrderedDict, defaultdict
|
||||
from datetime import date, datetime
|
||||
from typing import TYPE_CHECKING
|
||||
|
||||
from funcy import lmap
|
||||
|
||||
from dvc.cli import completion
|
||||
from dvc.cli.command import CmdBase
|
||||
from dvc.cli.utils import append_doc_link
|
||||
from dvc.commands.metrics import DEFAULT_PRECISION
|
||||
from dvc.exceptions import DvcException, InvalidArgumentError
|
||||
from dvc.ui import ui
|
||||
from dvc.utils.flatten import flatten
|
||||
from dvc.utils.serialize import encode_exception
|
||||
|
||||
if TYPE_CHECKING:
|
||||
from dvc.compare import TabularData
|
||||
from dvc.ui import RichText
|
||||
|
||||
FILL_VALUE = "-"
|
||||
FILL_VALUE_ERRORED = "!"
|
||||
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
def _update_names(names, items):
|
||||
for name, item in items:
|
||||
item = item.get("data", {})
|
||||
if isinstance(item, dict):
|
||||
item = flatten(item)
|
||||
names[name].update({key: None for key in item})
|
||||
|
||||
|
||||
def _collect_names(all_experiments, **kwargs):
|
||||
metric_names = defaultdict(dict)
|
||||
param_names = defaultdict(dict)
|
||||
deps_names = set()
|
||||
|
||||
for _, experiments in all_experiments.items():
|
||||
for exp_data in experiments.values():
|
||||
exp = exp_data.get("data", {})
|
||||
_update_names(metric_names, exp.get("metrics", {}).items())
|
||||
_update_names(param_names, exp.get("params", {}).items())
|
||||
for dep_name in exp.get("deps", {}):
|
||||
deps_names.add(dep_name)
|
||||
|
||||
return metric_names, param_names, sorted(deps_names)
|
||||
|
||||
|
||||
experiment_types = {
|
||||
"checkpoint_tip": "│ ╓",
|
||||
"checkpoint_commit": "│ ╟",
|
||||
"checkpoint_base": "├─╨",
|
||||
"branch_commit": "├──",
|
||||
"branch_base": "└──",
|
||||
"baseline": "",
|
||||
}
|
||||
|
||||
|
||||
def _collect_rows(
|
||||
base_rev,
|
||||
experiments,
|
||||
all_headers,
|
||||
metric_headers,
|
||||
param_headers,
|
||||
metric_names,
|
||||
param_names,
|
||||
deps_names,
|
||||
precision=DEFAULT_PRECISION,
|
||||
sort_by=None,
|
||||
sort_order=None,
|
||||
fill_value=FILL_VALUE,
|
||||
iso=False,
|
||||
):
|
||||
from scmrepo.git import Git
|
||||
|
||||
if sort_by:
|
||||
sort_path, sort_name, sort_type = _sort_column(
|
||||
sort_by, metric_names, param_names
|
||||
)
|
||||
reverse = sort_order == "desc"
|
||||
experiments = _sort_exp(
|
||||
experiments, sort_path, sort_name, sort_type, reverse
|
||||
)
|
||||
|
||||
new_checkpoint = True
|
||||
for i, (rev, results) in enumerate(experiments.items()):
|
||||
fill_value = FILL_VALUE_ERRORED if results.get("error") else fill_value
|
||||
row_dict = {k: fill_value for k in all_headers}
|
||||
|
||||
exp = results.get("data", {})
|
||||
|
||||
if exp.get("running"):
|
||||
state = "Running"
|
||||
elif exp.get("queued"):
|
||||
state = "Queued"
|
||||
else:
|
||||
state = fill_value
|
||||
|
||||
is_baseline = rev == "baseline"
|
||||
|
||||
if is_baseline:
|
||||
name_rev = base_rev[:7] if Git.is_sha(base_rev) else base_rev
|
||||
else:
|
||||
name_rev = rev[:7]
|
||||
|
||||
tip = exp.get("checkpoint_tip")
|
||||
parent_rev = exp.get("checkpoint_parent", "")
|
||||
parent_exp = experiments.get(parent_rev, {}).get("data", {})
|
||||
parent_tip = parent_exp.get("checkpoint_tip")
|
||||
|
||||
parent = ""
|
||||
if is_baseline:
|
||||
typ = "baseline"
|
||||
elif tip:
|
||||
if tip == parent_tip:
|
||||
typ = (
|
||||
"checkpoint_tip" if new_checkpoint else "checkpoint_commit"
|
||||
)
|
||||
elif parent_rev == base_rev:
|
||||
typ = "checkpoint_base"
|
||||
else:
|
||||
typ = "checkpoint_commit"
|
||||
parent = parent_rev[:7]
|
||||
elif i < len(experiments) - 1:
|
||||
typ = "branch_commit"
|
||||
else:
|
||||
typ = "branch_base"
|
||||
|
||||
if not is_baseline:
|
||||
new_checkpoint = not (tip and tip == parent_tip)
|
||||
|
||||
row_dict["Experiment"] = exp.get("name", "")
|
||||
row_dict["rev"] = name_rev
|
||||
row_dict["typ"] = typ
|
||||
row_dict["Created"] = format_time(
|
||||
exp.get("timestamp"), fill_value, iso
|
||||
)
|
||||
row_dict["parent"] = parent
|
||||
row_dict["State"] = state
|
||||
row_dict["Executor"] = exp.get("executor", fill_value)
|
||||
|
||||
_extend_row(
|
||||
row_dict,
|
||||
metric_names,
|
||||
metric_headers,
|
||||
exp.get("metrics", {}).items(),
|
||||
precision,
|
||||
fill_value=fill_value,
|
||||
)
|
||||
_extend_row(
|
||||
row_dict,
|
||||
param_names,
|
||||
param_headers,
|
||||
exp.get("params", {}).items(),
|
||||
precision,
|
||||
fill_value=fill_value,
|
||||
)
|
||||
for dep in deps_names:
|
||||
hash_info = exp.get("deps", {}).get(dep, {}).get("hash")
|
||||
if hash_info is not None:
|
||||
hash_info = hash_info[:7]
|
||||
row_dict[dep] = hash_info
|
||||
yield list(row_dict.values())
|
||||
|
||||
|
||||
def _sort_column(sort_by, metric_names, param_names):
|
||||
path, _, sort_name = sort_by.rpartition(":")
|
||||
matches = set()
|
||||
|
||||
if path:
|
||||
if path in metric_names and sort_name in metric_names[path]:
|
||||
matches.add((path, sort_name, "metrics"))
|
||||
if path in param_names and sort_name in param_names[path]:
|
||||
matches.add((path, sort_name, "params"))
|
||||
else:
|
||||
for path in metric_names:
|
||||
if sort_name in metric_names[path]:
|
||||
matches.add((path, sort_name, "metrics"))
|
||||
for path in param_names:
|
||||
if sort_name in param_names[path]:
|
||||
matches.add((path, sort_name, "params"))
|
||||
|
||||
if len(matches) == 1:
|
||||
return matches.pop()
|
||||
if len(matches) > 1:
|
||||
raise InvalidArgumentError(
|
||||
"Ambiguous sort column '{}' matched '{}'".format(
|
||||
sort_by,
|
||||
", ".join([f"{path}:{name}" for path, name, _ in matches]),
|
||||
)
|
||||
)
|
||||
raise InvalidArgumentError(f"Unknown sort column '{sort_by}'")
|
||||
|
||||
|
||||
def _sort_exp(experiments, sort_path, sort_name, typ, reverse):
|
||||
def _sort(item):
|
||||
rev, exp = item
|
||||
exp_data = exp.get("data", {})
|
||||
tip = exp_data.get("checkpoint_tip")
|
||||
if tip and tip != rev:
|
||||
# Sort checkpoint experiments by tip commit
|
||||
return _sort((tip, experiments[tip]))
|
||||
data = exp_data.get(typ, {}).get(sort_path, {}).get("data", {})
|
||||
val = flatten(data).get(sort_name)
|
||||
return val is None, val
|
||||
|
||||
ret = OrderedDict()
|
||||
if "baseline" in experiments:
|
||||
ret["baseline"] = experiments.pop("baseline")
|
||||
|
||||
ret.update(sorted(experiments.items(), key=_sort, reverse=reverse))
|
||||
return ret
|
||||
|
||||
|
||||
def format_time(datetime_obj, fill_value=FILL_VALUE, iso=False):
|
||||
if datetime_obj is None:
|
||||
return fill_value
|
||||
|
||||
if iso:
|
||||
return datetime_obj.isoformat()
|
||||
|
||||
if datetime_obj.date() == date.today():
|
||||
fmt = "%I:%M %p"
|
||||
else:
|
||||
fmt = "%b %d, %Y"
|
||||
return datetime_obj.strftime(fmt)
|
||||
|
||||
|
||||
def _extend_row(row, names, headers, items, precision, fill_value=FILL_VALUE):
|
||||
from dvc.compare import _format_field, with_value
|
||||
|
||||
for fname, data in items:
|
||||
item = data.get("data", {})
|
||||
item = flatten(item) if isinstance(item, dict) else {fname: item}
|
||||
for name in names[fname]:
|
||||
value = with_value(
|
||||
item.get(name),
|
||||
FILL_VALUE_ERRORED if data.get("error", None) else fill_value,
|
||||
)
|
||||
# wrap field data in ui.rich_text, otherwise rich may
|
||||
# interpret unescaped braces from list/dict types as rich
|
||||
# markup tags
|
||||
value = ui.rich_text(str(_format_field(value, precision)))
|
||||
if name in headers:
|
||||
row[name] = value
|
||||
else:
|
||||
row[f"{fname}:{name}"] = value
|
||||
|
||||
|
||||
def experiments_table(
|
||||
all_experiments,
|
||||
headers,
|
||||
metric_headers,
|
||||
metric_names,
|
||||
param_headers,
|
||||
param_names,
|
||||
deps_names,
|
||||
sort_by=None,
|
||||
sort_order=None,
|
||||
precision=DEFAULT_PRECISION,
|
||||
fill_value=FILL_VALUE,
|
||||
iso=False,
|
||||
) -> "TabularData":
|
||||
from funcy import lconcat
|
||||
|
||||
from dvc.compare import TabularData
|
||||
|
||||
all_headers = lconcat(headers, metric_headers, param_headers, deps_names)
|
||||
td = TabularData(all_headers, fill_value=fill_value)
|
||||
for base_rev, experiments in all_experiments.items():
|
||||
rows = _collect_rows(
|
||||
base_rev,
|
||||
experiments,
|
||||
all_headers,
|
||||
metric_headers,
|
||||
param_headers,
|
||||
metric_names,
|
||||
param_names,
|
||||
deps_names,
|
||||
sort_by=sort_by,
|
||||
sort_order=sort_order,
|
||||
precision=precision,
|
||||
fill_value=fill_value,
|
||||
iso=iso,
|
||||
)
|
||||
td.extend(rows)
|
||||
|
||||
return td
|
||||
|
||||
|
||||
def prepare_exp_id(kwargs) -> "RichText":
|
||||
exp_name = kwargs["Experiment"]
|
||||
rev = kwargs["rev"]
|
||||
typ = kwargs.get("typ", "baseline")
|
||||
|
||||
if typ == "baseline" or not exp_name:
|
||||
text = ui.rich_text(exp_name or rev)
|
||||
else:
|
||||
text = ui.rich_text.assemble(rev, " [", (exp_name, "bold"), "]")
|
||||
|
||||
parent = kwargs.get("parent")
|
||||
suff = f" ({parent})" if parent else ""
|
||||
text.append(suff)
|
||||
|
||||
tree = experiment_types[typ]
|
||||
pref = f"{tree} " if tree else ""
|
||||
return ui.rich_text(pref) + text
|
||||
|
||||
|
||||
def baseline_styler(typ):
|
||||
return {"style": "bold"} if typ == "baseline" else {}
|
||||
|
||||
|
||||
def show_experiments(
|
||||
all_experiments,
|
||||
keep=None,
|
||||
drop=None,
|
||||
pager=True,
|
||||
csv=False,
|
||||
markdown=False,
|
||||
pcp=False,
|
||||
**kwargs,
|
||||
):
|
||||
from funcy.seqs import flatten as flatten_list
|
||||
|
||||
metric_names, param_names, deps_names = _collect_names(all_experiments)
|
||||
|
||||
headers = [
|
||||
"Experiment",
|
||||
"rev",
|
||||
"typ",
|
||||
"Created",
|
||||
"parent",
|
||||
"State",
|
||||
"Executor",
|
||||
]
|
||||
|
||||
names = {**metric_names, **param_names}
|
||||
counter = Counter(flatten_list([list(a.keys()) for a in names.values()]))
|
||||
counter.update(headers)
|
||||
metric_headers = _normalize_headers(metric_names, counter)
|
||||
param_headers = _normalize_headers(param_names, counter)
|
||||
|
||||
td = experiments_table(
|
||||
all_experiments,
|
||||
headers,
|
||||
metric_headers,
|
||||
metric_names,
|
||||
param_headers,
|
||||
param_names,
|
||||
deps_names,
|
||||
kwargs.get("sort_by"),
|
||||
kwargs.get("sort_order"),
|
||||
kwargs.get("precision"),
|
||||
kwargs.get("fill_value"),
|
||||
kwargs.get("iso"),
|
||||
)
|
||||
if keep:
|
||||
for col in td.keys():
|
||||
if re.match(keep, col):
|
||||
td.protect(col)
|
||||
|
||||
for col in ("State", "Executor"):
|
||||
if td.is_empty(col):
|
||||
td.drop(col)
|
||||
|
||||
row_styles = lmap(baseline_styler, td.column("typ"))
|
||||
|
||||
if not csv:
|
||||
merge_headers = ["Experiment", "rev", "typ", "parent"]
|
||||
td.column("Experiment")[:] = map(
|
||||
prepare_exp_id, td.as_dict(merge_headers)
|
||||
)
|
||||
td.drop(*merge_headers[1:])
|
||||
|
||||
headers = {
|
||||
"metrics": metric_headers,
|
||||
"params": param_headers,
|
||||
"deps": deps_names,
|
||||
}
|
||||
styles = {
|
||||
"Experiment": {"no_wrap": True, "header_style": "black on grey93"},
|
||||
"Created": {"header_style": "black on grey93"},
|
||||
"State": {"header_style": "black on grey93"},
|
||||
"Executor": {"header_style": "black on grey93"},
|
||||
}
|
||||
header_bg_colors = {
|
||||
"metrics": "cornsilk1",
|
||||
"params": "light_cyan1",
|
||||
"deps": "plum2",
|
||||
}
|
||||
styles.update(
|
||||
{
|
||||
header: {
|
||||
"justify": "right" if typ == "metrics" else "left",
|
||||
"header_style": f"black on {header_bg_colors[typ]}",
|
||||
"collapse": idx != 0,
|
||||
"no_wrap": typ == "metrics",
|
||||
}
|
||||
for typ, hs in headers.items()
|
||||
for idx, header in enumerate(hs)
|
||||
}
|
||||
)
|
||||
|
||||
if kwargs.get("only_changed", False) or pcp:
|
||||
td.drop_duplicates("cols", ignore_empty=False)
|
||||
|
||||
cols_to_drop = set()
|
||||
if drop is not None:
|
||||
cols_to_drop = {col for col in td.keys() if re.match(drop, col)}
|
||||
if pcp:
|
||||
cols_to_drop.add("Created")
|
||||
td.drop(*cols_to_drop)
|
||||
|
||||
if pcp:
|
||||
subset = {x for x in td.keys() if x != "Experiment"}
|
||||
td.dropna(
|
||||
"rows",
|
||||
how="all",
|
||||
subset=subset,
|
||||
)
|
||||
td.drop_duplicates("rows", subset=subset)
|
||||
if "Experiment" in td:
|
||||
td.column("Experiment")[:] = [
|
||||
# remove tree characters
|
||||
str(x).encode("ascii", "ignore").strip().decode()
|
||||
for x in td.column("Experiment")
|
||||
]
|
||||
out = kwargs.get("out") or "dvc_plots"
|
||||
output_file = os.path.join(out, "index.html")
|
||||
ui.write(
|
||||
td.to_parallel_coordinates(
|
||||
output_path=os.path.abspath(output_file),
|
||||
color_by=kwargs.get("sort_by") or "Experiment",
|
||||
)
|
||||
)
|
||||
if kwargs.get("open"):
|
||||
return ui.open_browser(output_file)
|
||||
|
||||
else:
|
||||
td.render(
|
||||
pager=pager,
|
||||
borders="horizontals",
|
||||
rich_table=True,
|
||||
header_styles=styles,
|
||||
row_styles=row_styles,
|
||||
csv=csv,
|
||||
markdown=markdown,
|
||||
)
|
||||
|
||||
|
||||
def _normalize_headers(names, count):
|
||||
return [
|
||||
name if count[name] == 1 else f"{path}:{name}"
|
||||
for path in names
|
||||
for name in names[path]
|
||||
]
|
||||
|
||||
|
||||
def _format_json(item):
|
||||
if isinstance(item, (date, datetime)):
|
||||
return item.isoformat()
|
||||
return encode_exception(item)
|
||||
|
||||
|
||||
class CmdExperimentsShow(CmdBase):
|
||||
def run(self):
|
||||
try:
|
||||
all_experiments = self.repo.experiments.show(
|
||||
all_branches=self.args.all_branches,
|
||||
all_tags=self.args.all_tags,
|
||||
all_commits=self.args.all_commits,
|
||||
revs=self.args.rev,
|
||||
num=self.args.num,
|
||||
sha_only=self.args.sha,
|
||||
param_deps=self.args.param_deps,
|
||||
fetch_running=self.args.fetch_running,
|
||||
)
|
||||
except DvcException:
|
||||
logger.exception("failed to show experiments")
|
||||
return 1
|
||||
|
||||
if self.args.json:
|
||||
ui.write_json(all_experiments, default=_format_json)
|
||||
else:
|
||||
precision = (
|
||||
self.args.precision or None
|
||||
if self.args.csv
|
||||
else DEFAULT_PRECISION
|
||||
)
|
||||
fill_value = "" if self.args.csv else FILL_VALUE
|
||||
iso = True if self.args.csv else False
|
||||
|
||||
show_experiments(
|
||||
all_experiments,
|
||||
keep=self.args.keep,
|
||||
drop=self.args.drop,
|
||||
sort_by=self.args.sort_by,
|
||||
sort_order=self.args.sort_order,
|
||||
precision=precision,
|
||||
fill_value=fill_value,
|
||||
iso=iso,
|
||||
pager=not self.args.no_pager,
|
||||
csv=self.args.csv,
|
||||
markdown=self.args.markdown,
|
||||
only_changed=self.args.only_changed,
|
||||
pcp=self.args.pcp,
|
||||
out=self.args.out,
|
||||
open=self.args.open,
|
||||
)
|
||||
return 0
|
||||
|
||||
|
||||
def add_parser(experiments_subparsers, parent_parser):
|
||||
from . import add_rev_selection_flags
|
||||
|
||||
EXPERIMENTS_SHOW_HELP = "Print experiments."
|
||||
experiments_show_parser = experiments_subparsers.add_parser(
|
||||
"show",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(EXPERIMENTS_SHOW_HELP, "exp/show"),
|
||||
help=EXPERIMENTS_SHOW_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
add_rev_selection_flags(experiments_show_parser, "Show")
|
||||
experiments_show_parser.add_argument(
|
||||
"-a",
|
||||
"--all-branches",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Show experiments derived from the tip of all Git branches.",
|
||||
)
|
||||
experiments_show_parser.add_argument(
|
||||
"-T",
|
||||
"--all-tags",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Show experiments derived from all Git tags.",
|
||||
)
|
||||
experiments_show_parser.add_argument(
|
||||
"--no-pager",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Do not pipe output into a pager.",
|
||||
)
|
||||
experiments_show_parser.add_argument(
|
||||
"--only-changed",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help=(
|
||||
"Only show metrics/params with values varying "
|
||||
"across the selected experiments."
|
||||
),
|
||||
)
|
||||
experiments_show_parser.add_argument(
|
||||
"--drop",
|
||||
help="Remove the columns matching the specified regex pattern.",
|
||||
metavar="<regex_pattern>",
|
||||
)
|
||||
experiments_show_parser.add_argument(
|
||||
"--keep",
|
||||
help="Preserve the columns matching the specified regex pattern.",
|
||||
metavar="<regex_pattern>",
|
||||
)
|
||||
experiments_show_parser.add_argument(
|
||||
"--param-deps",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Show only params that are stage dependencies.",
|
||||
)
|
||||
experiments_show_parser.add_argument(
|
||||
"--sort-by",
|
||||
help="Sort related experiments by the specified metric or param.",
|
||||
metavar="<metric/param>",
|
||||
)
|
||||
experiments_show_parser.add_argument(
|
||||
"--sort-order",
|
||||
help=(
|
||||
"Sort order to use with --sort-by."
|
||||
" Defaults to ascending ('asc')."
|
||||
),
|
||||
choices=("asc", "desc"),
|
||||
default="asc",
|
||||
)
|
||||
experiments_show_parser.add_argument(
|
||||
"--sha",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Always show git commit SHAs instead of branch/tag names.",
|
||||
)
|
||||
experiments_show_parser.add_argument(
|
||||
"--json",
|
||||
"--show-json",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Print output in JSON format instead of a human-readable table.",
|
||||
)
|
||||
experiments_show_parser.add_argument(
|
||||
"--csv",
|
||||
"--show-csv",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Print output in csv format instead of a human-readable table.",
|
||||
)
|
||||
experiments_show_parser.add_argument(
|
||||
"--md",
|
||||
"--show-md",
|
||||
action="store_true",
|
||||
default=False,
|
||||
dest="markdown",
|
||||
help="Show tabulated output in the Markdown format (GFM).",
|
||||
)
|
||||
experiments_show_parser.add_argument(
|
||||
"--precision",
|
||||
type=int,
|
||||
help=(
|
||||
"Round metrics/params to `n` digits precision after the decimal "
|
||||
f"point. Rounds to {DEFAULT_PRECISION} digits by default."
|
||||
),
|
||||
metavar="<n>",
|
||||
)
|
||||
experiments_show_parser.add_argument(
|
||||
"--parallel-coordinates-plot",
|
||||
"--pcp",
|
||||
dest="pcp",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Generate a Parallel Coordinates Plot from the tabulated output.",
|
||||
)
|
||||
experiments_show_parser.add_argument(
|
||||
"-o",
|
||||
"--out",
|
||||
default=None,
|
||||
help="Destination folder to save the Parallel Coordinates Plot to",
|
||||
metavar="<path>",
|
||||
).complete = completion.DIR
|
||||
experiments_show_parser.add_argument(
|
||||
"--open",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Open the Parallel Coordinates Plot directly in the browser.",
|
||||
)
|
||||
experiments_show_parser.add_argument(
|
||||
"--no-fetch",
|
||||
dest="fetch_running",
|
||||
action="store_false",
|
||||
help=argparse.SUPPRESS,
|
||||
)
|
||||
experiments_show_parser.set_defaults(func=CmdExperimentsShow)
|
||||
@@ -1,8 +1,9 @@
|
||||
import argparse
|
||||
import logging
|
||||
|
||||
from dvc.command import completion
|
||||
from dvc.command.base import CmdBase, append_doc_link
|
||||
from dvc.cli import completion
|
||||
from dvc.cli.command import CmdBase
|
||||
from dvc.cli.utils import append_doc_link
|
||||
from dvc.exceptions import DvcException
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
@@ -15,7 +16,7 @@ class CmdFreezeBase(CmdBase):
|
||||
try:
|
||||
func(target)
|
||||
except DvcException:
|
||||
logger.exception(f"failed to {name} '{target}'")
|
||||
logger.exception("failed to %s '%s'", name, target)
|
||||
ret = 1
|
||||
return ret
|
||||
|
||||
@@ -2,7 +2,8 @@ import argparse
|
||||
import logging
|
||||
import os
|
||||
|
||||
from dvc.command.base import CmdBase, append_doc_link
|
||||
from dvc.cli.command import CmdBase
|
||||
from dvc.cli.utils import append_doc_link
|
||||
from dvc.ui import ui
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
@@ -10,29 +11,46 @@ logger = logging.getLogger(__name__)
|
||||
|
||||
class CmdGC(CmdBase):
|
||||
def run(self):
|
||||
from dvc.repo.gc import _raise_error_if_all_disabled
|
||||
from dvc.repo.gc import _validate_args
|
||||
|
||||
_raise_error_if_all_disabled(
|
||||
_validate_args(
|
||||
all_branches=self.args.all_branches,
|
||||
all_tags=self.args.all_tags,
|
||||
all_commits=self.args.all_commits,
|
||||
all_experiments=self.args.all_experiments,
|
||||
commit_date=self.args.commit_date,
|
||||
workspace=self.args.workspace,
|
||||
rev=self.args.rev,
|
||||
num=self.args.num,
|
||||
)
|
||||
|
||||
if self.args.rev:
|
||||
self.args.num = self.args.num or 1
|
||||
|
||||
msg = "This will remove all cache except items used in "
|
||||
|
||||
msg += "the workspace"
|
||||
if self.args.all_commits:
|
||||
msg += " and all git commits"
|
||||
elif self.args.all_branches and self.args.all_tags:
|
||||
msg += " and all git branches and tags"
|
||||
elif self.args.all_branches:
|
||||
msg += " and all git branches"
|
||||
elif self.args.all_tags:
|
||||
msg += " and all git tags"
|
||||
elif self.args.all_experiments:
|
||||
msg += " and all experiments"
|
||||
else:
|
||||
if self.args.all_branches and self.args.all_tags:
|
||||
msg += " and all git branches and tags"
|
||||
elif self.args.all_branches:
|
||||
msg += " and all git branches"
|
||||
elif self.args.all_tags:
|
||||
msg += " and all git tags"
|
||||
if self.args.commit_date:
|
||||
msg += (
|
||||
" and all git commits before date "
|
||||
f"{self.args.commit_date}"
|
||||
)
|
||||
if self.args.rev:
|
||||
msg += (
|
||||
f" and last {self.args.num} commits from {self.args.rev}"
|
||||
)
|
||||
|
||||
if self.args.all_experiments:
|
||||
msg += " and all experiments"
|
||||
if self.args.repos:
|
||||
msg += " of the current and the following repos:"
|
||||
|
||||
@@ -52,12 +70,15 @@ class CmdGC(CmdBase):
|
||||
all_tags=self.args.all_tags,
|
||||
all_commits=self.args.all_commits,
|
||||
all_experiments=self.args.all_experiments,
|
||||
commit_date=self.args.commit_date,
|
||||
cloud=self.args.cloud,
|
||||
remote=self.args.remote,
|
||||
force=self.args.force,
|
||||
jobs=self.args.jobs,
|
||||
repos=self.args.repos,
|
||||
workspace=self.args.workspace,
|
||||
rev=self.args.rev,
|
||||
num=self.args.num,
|
||||
)
|
||||
return 0
|
||||
|
||||
@@ -82,6 +103,26 @@ def add_parser(subparsers, parent_parser):
|
||||
default=False,
|
||||
help="Keep data files used in the current workspace.",
|
||||
)
|
||||
gc_parser.add_argument(
|
||||
"--rev",
|
||||
type=str,
|
||||
default=None,
|
||||
help="Keep data files used in the specified <commit>.",
|
||||
metavar="<commit>",
|
||||
)
|
||||
gc_parser.add_argument(
|
||||
"-n",
|
||||
"--num",
|
||||
type=int,
|
||||
dest="num",
|
||||
metavar="<num>",
|
||||
help=(
|
||||
"Keep data files used in the last `num` commits "
|
||||
"starting from the `--rev` <commit>. "
|
||||
"Only used if `--rev` is also provided. "
|
||||
"Defaults to `1`."
|
||||
),
|
||||
)
|
||||
gc_parser.add_argument(
|
||||
"-a",
|
||||
"--all-branches",
|
||||
@@ -103,6 +144,18 @@ def add_parser(subparsers, parent_parser):
|
||||
default=False,
|
||||
help="Keep data files for all Git commits.",
|
||||
)
|
||||
gc_parser.add_argument(
|
||||
"--date",
|
||||
type=str,
|
||||
dest="commit_date",
|
||||
metavar="<YYYY-MM-DD>",
|
||||
default=None,
|
||||
help=(
|
||||
"Keep cached data referenced in the commits after ( inclusive )"
|
||||
" a certain time. Date must match the extended ISO 8601 format "
|
||||
"(YYYY-MM-DD)."
|
||||
),
|
||||
)
|
||||
gc_parser.add_argument(
|
||||
"--all-experiments",
|
||||
action="store_true",
|
||||
@@ -136,7 +189,6 @@ def add_parser(subparsers, parent_parser):
|
||||
help=(
|
||||
"Number of jobs to run simultaneously. "
|
||||
"The default value is 4 * cpu_count(). "
|
||||
"For SSH remotes, the default is 4. "
|
||||
),
|
||||
metavar="<number>",
|
||||
)
|
||||
@@ -1,10 +1,11 @@
|
||||
import argparse
|
||||
import logging
|
||||
|
||||
from dvc.cli import completion
|
||||
from dvc.cli.command import CmdBaseNoRepo
|
||||
from dvc.exceptions import DvcException
|
||||
|
||||
from . import completion
|
||||
from .base import CmdBaseNoRepo, append_doc_link
|
||||
from ..cli.utils import append_doc_link
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
@@ -93,7 +94,6 @@ def add_parser(subparsers, parent_parser):
|
||||
help=(
|
||||
"Number of jobs to run simultaneously. "
|
||||
"The default value is 4 * cpu_count(). "
|
||||
"For SSH remotes, the default is 4. "
|
||||
),
|
||||
metavar="<number>",
|
||||
)
|
||||
@@ -1,10 +1,11 @@
|
||||
import argparse
|
||||
import logging
|
||||
|
||||
from dvc.cli import completion
|
||||
from dvc.cli.command import CmdBaseNoRepo
|
||||
from dvc.exceptions import DvcException
|
||||
|
||||
from . import completion
|
||||
from .base import CmdBaseNoRepo, append_doc_link
|
||||
from ..cli.utils import append_doc_link
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
@@ -17,7 +18,7 @@ class CmdGetUrl(CmdBaseNoRepo):
|
||||
Repo.get_url(self.args.url, out=self.args.out, jobs=self.args.jobs)
|
||||
return 0
|
||||
except DvcException:
|
||||
logger.exception(f"failed to get '{self.args.url}'")
|
||||
logger.exception("failed to get '%s'", self.args.url)
|
||||
return 1
|
||||
|
||||
|
||||
@@ -43,7 +44,6 @@ def add_parser(subparsers, parent_parser):
|
||||
help=(
|
||||
"Number of jobs to run simultaneously. "
|
||||
"The default value is 4 * cpu_count(). "
|
||||
"For SSH remotes, the default is 4. "
|
||||
),
|
||||
metavar="<number>",
|
||||
)
|
||||
@@ -1,7 +1,8 @@
|
||||
import logging
|
||||
import os
|
||||
|
||||
from dvc.command.base import CmdBaseNoRepo, fix_subparsers
|
||||
from dvc.cli.command import CmdBaseNoRepo
|
||||
from dvc.cli.utils import fix_subparsers
|
||||
from dvc.exceptions import NotDvcRepoError
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
@@ -25,7 +26,7 @@ class CmdHookBase(CmdBaseNoRepo):
|
||||
|
||||
class CmdPreCommit(CmdHookBase):
|
||||
def _run(self):
|
||||
from dvc.main import main
|
||||
from dvc.cli import main
|
||||
|
||||
return main(["status"])
|
||||
|
||||
@@ -49,14 +50,14 @@ class CmdPostCheckout(CmdHookBase):
|
||||
if os.path.isdir(os.path.join(".git", "rebase-merge")):
|
||||
return 0
|
||||
|
||||
from dvc.main import main
|
||||
from dvc.cli import main
|
||||
|
||||
return main(["checkout"])
|
||||
|
||||
|
||||
class CmdPrePush(CmdHookBase):
|
||||
def _run(self):
|
||||
from dvc.main import main
|
||||
from dvc.cli import main
|
||||
|
||||
return main(["push"])
|
||||
|
||||
@@ -1,8 +1,9 @@
|
||||
import argparse
|
||||
import logging
|
||||
|
||||
from dvc.command import completion
|
||||
from dvc.command.base import CmdBase, append_doc_link
|
||||
from dvc.cli import completion
|
||||
from dvc.cli.command import CmdBase
|
||||
from dvc.cli.utils import append_doc_link
|
||||
from dvc.exceptions import DvcException
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
@@ -18,7 +19,11 @@ class CmdImport(CmdBase):
|
||||
fname=self.args.file,
|
||||
rev=self.args.rev,
|
||||
no_exec=self.args.no_exec,
|
||||
no_download=self.args.no_download,
|
||||
desc=self.args.desc,
|
||||
type=self.args.type,
|
||||
labels=self.args.labels,
|
||||
meta=self.args.meta,
|
||||
jobs=self.args.jobs,
|
||||
)
|
||||
except DvcException:
|
||||
@@ -32,6 +37,8 @@ class CmdImport(CmdBase):
|
||||
|
||||
|
||||
def add_parser(subparsers, parent_parser):
|
||||
from .add import _add_annotating_args
|
||||
|
||||
IMPORT_HELP = (
|
||||
"Download file or directory tracked by DVC or by Git "
|
||||
"into the workspace, and track it."
|
||||
@@ -68,20 +75,19 @@ def add_parser(subparsers, parent_parser):
|
||||
help="Specify name of the .dvc file this command will generate.",
|
||||
metavar="<filename>",
|
||||
)
|
||||
import_parser.add_argument(
|
||||
no_download_exec_group = import_parser.add_mutually_exclusive_group()
|
||||
no_download_exec_group.add_argument(
|
||||
"--no-exec",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Only create .dvc file without actually downloading it.",
|
||||
help="Only create .dvc file without actually importing target data.",
|
||||
)
|
||||
import_parser.add_argument(
|
||||
"--desc",
|
||||
type=str,
|
||||
metavar="<text>",
|
||||
help=(
|
||||
"User description of the data (optional). "
|
||||
"This doesn't affect any DVC operations."
|
||||
),
|
||||
no_download_exec_group.add_argument(
|
||||
"--no-download",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Create .dvc file including target data hash value(s)"
|
||||
" but do not actually download the file(s).",
|
||||
)
|
||||
import_parser.add_argument(
|
||||
"-j",
|
||||
@@ -90,8 +96,9 @@ def add_parser(subparsers, parent_parser):
|
||||
help=(
|
||||
"Number of jobs to run simultaneously. "
|
||||
"The default value is 4 * cpu_count(). "
|
||||
"For SSH remotes, the default is 4. "
|
||||
),
|
||||
metavar="<number>",
|
||||
)
|
||||
|
||||
_add_annotating_args(import_parser)
|
||||
import_parser.set_defaults(func=CmdImport)
|
||||
@@ -1,8 +1,9 @@
|
||||
import argparse
|
||||
import logging
|
||||
|
||||
from dvc.command import completion
|
||||
from dvc.command.base import CmdBase, append_doc_link
|
||||
from dvc.cli import completion
|
||||
from dvc.cli.command import CmdBase
|
||||
from dvc.cli.utils import append_doc_link
|
||||
from dvc.exceptions import DvcException
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
@@ -16,9 +17,13 @@ class CmdImportUrl(CmdBase):
|
||||
out=self.args.out,
|
||||
fname=self.args.file,
|
||||
no_exec=self.args.no_exec,
|
||||
no_download=self.args.no_download,
|
||||
remote=self.args.remote,
|
||||
to_remote=self.args.to_remote,
|
||||
desc=self.args.desc,
|
||||
type=self.args.type,
|
||||
labels=self.args.labels,
|
||||
meta=self.args.meta,
|
||||
jobs=self.args.jobs,
|
||||
)
|
||||
except DvcException:
|
||||
@@ -33,6 +38,8 @@ class CmdImportUrl(CmdBase):
|
||||
|
||||
|
||||
def add_parser(subparsers, parent_parser):
|
||||
from .add import _add_annotating_args
|
||||
|
||||
IMPORT_HELP = (
|
||||
"Download or copy file from URL and take it under DVC control."
|
||||
)
|
||||
@@ -65,11 +72,19 @@ def add_parser(subparsers, parent_parser):
|
||||
help="Specify name of the .dvc file this command will generate.",
|
||||
metavar="<filename>",
|
||||
).complete = completion.DIR
|
||||
import_parser.add_argument(
|
||||
no_download_exec_group = import_parser.add_mutually_exclusive_group()
|
||||
no_download_exec_group.add_argument(
|
||||
"--no-exec",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Only create .dvc file without actually downloading it.",
|
||||
help="Only create .dvc file without actually importing target data.",
|
||||
)
|
||||
no_download_exec_group.add_argument(
|
||||
"--no-download",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Create .dvc file including target data hash value(s)"
|
||||
" but do not actually download the file(s).",
|
||||
)
|
||||
import_parser.add_argument(
|
||||
"--to-remote",
|
||||
@@ -90,17 +105,8 @@ def add_parser(subparsers, parent_parser):
|
||||
help=(
|
||||
"Number of jobs to run simultaneously. "
|
||||
"The default value is 4 * cpu_count(). "
|
||||
"For SSH remotes, the default is 4. "
|
||||
),
|
||||
metavar="<number>",
|
||||
)
|
||||
import_parser.add_argument(
|
||||
"--desc",
|
||||
type=str,
|
||||
metavar="<text>",
|
||||
help=(
|
||||
"User description of the data (optional). "
|
||||
"This doesn't affect any DVC operations."
|
||||
),
|
||||
)
|
||||
_add_annotating_args(import_parser)
|
||||
import_parser.set_defaults(func=CmdImportUrl)
|
||||
@@ -4,7 +4,8 @@ import logging
|
||||
import colorama
|
||||
|
||||
from dvc import analytics
|
||||
from dvc.command.base import CmdBaseNoRepo, append_doc_link
|
||||
from dvc.cli.command import CmdBaseNoRepo
|
||||
from dvc.cli.utils import append_doc_link
|
||||
from dvc.utils import boxify
|
||||
from dvc.utils import format_link as fmt_link
|
||||
|
||||
@@ -1,7 +1,8 @@
|
||||
import argparse
|
||||
import logging
|
||||
|
||||
from dvc.command.base import CmdBase, append_doc_link
|
||||
from dvc.cli.command import CmdBase
|
||||
from dvc.cli.utils import append_doc_link
|
||||
from dvc.exceptions import DvcException
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
@@ -1,9 +1,10 @@
|
||||
import argparse
|
||||
import logging
|
||||
|
||||
from dvc.command import completion
|
||||
from dvc.command.base import CmdBaseNoRepo, append_doc_link
|
||||
from dvc.command.ls.ls_colors import LsColors
|
||||
from dvc.cli import completion
|
||||
from dvc.cli.command import CmdBaseNoRepo
|
||||
from dvc.cli.utils import append_doc_link
|
||||
from dvc.commands.ls.ls_colors import LsColors
|
||||
from dvc.exceptions import DvcException
|
||||
from dvc.ui import ui
|
||||
|
||||
@@ -41,7 +42,7 @@ class CmdList(CmdBaseNoRepo):
|
||||
ui.write("\n".join(entries))
|
||||
return 0
|
||||
except DvcException:
|
||||
logger.exception(f"failed to list '{self.args.url}'")
|
||||
logger.exception("failed to list '%s'", self.args.url)
|
||||
return 1
|
||||
|
||||
|
||||
@@ -1,7 +1,8 @@
|
||||
import argparse
|
||||
|
||||
from dvc.command.base import CmdBase, append_doc_link, fix_subparsers
|
||||
from dvc.command.config import CmdConfig
|
||||
from dvc.cli.command import CmdBase
|
||||
from dvc.cli.utils import append_doc_link, fix_subparsers
|
||||
from dvc.commands.config import CmdConfig
|
||||
from dvc.compare import TabularData
|
||||
from dvc.config import ConfigError
|
||||
from dvc.exceptions import DvcException
|
||||
@@ -241,6 +242,7 @@ class CmdMachineStatus(CmdBase):
|
||||
"instance_hdd_size",
|
||||
"instance_gpu",
|
||||
]
|
||||
FILL_VALUE = "-"
|
||||
|
||||
def _add_row(
|
||||
self,
|
||||
@@ -250,7 +252,11 @@ class CmdMachineStatus(CmdBase):
|
||||
):
|
||||
|
||||
if not all_status:
|
||||
row = [name, None, "offline"]
|
||||
row = [
|
||||
name,
|
||||
self.FILL_VALUE,
|
||||
"offline",
|
||||
] # back to `None` after #7167
|
||||
td.append(row)
|
||||
for i, status in enumerate(all_status, start=1):
|
||||
row = [name, f"num_{i}", "running" if status else "offline"]
|
||||
@@ -264,7 +270,7 @@ class CmdMachineStatus(CmdBase):
|
||||
raise MachineDisabledError
|
||||
|
||||
td = TabularData(
|
||||
self.INSTANCE_FIELD + self.SHOWN_FIELD, fill_value="-"
|
||||
self.INSTANCE_FIELD + self.SHOWN_FIELD, fill_value=self.FILL_VALUE
|
||||
)
|
||||
|
||||
if self.args.name:
|
||||
@@ -304,7 +310,7 @@ class CmdMachineSsh(CmdBase):
|
||||
|
||||
|
||||
def add_parser(subparsers, parent_parser):
|
||||
from dvc.command.config import parent_config_parser
|
||||
from dvc.commands.config import parent_config_parser
|
||||
|
||||
machine_HELP = "Set up and manage cloud machines."
|
||||
machine_parser = subparsers.add_parser(
|
||||
@@ -1,8 +1,9 @@
|
||||
import argparse
|
||||
import logging
|
||||
|
||||
from dvc.command import completion
|
||||
from dvc.command.base import CmdBase, append_doc_link, fix_subparsers
|
||||
from dvc.cli import completion
|
||||
from dvc.cli.command import CmdBase
|
||||
from dvc.cli.utils import append_doc_link, fix_subparsers
|
||||
from dvc.exceptions import DvcException
|
||||
from dvc.ui import ui
|
||||
from dvc.utils.serialize import encode_exception
|
||||
@@ -1,8 +1,9 @@
|
||||
import argparse
|
||||
import logging
|
||||
|
||||
from dvc.command import completion
|
||||
from dvc.command.base import CmdBase, append_doc_link
|
||||
from dvc.cli import completion
|
||||
from dvc.cli.command import CmdBase
|
||||
from dvc.cli.utils import append_doc_link
|
||||
from dvc.exceptions import DvcException
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
@@ -1,8 +1,9 @@
|
||||
import argparse
|
||||
import logging
|
||||
|
||||
from dvc.command import completion
|
||||
from dvc.command.base import CmdBase, append_doc_link, fix_subparsers
|
||||
from dvc.cli import completion
|
||||
from dvc.cli.command import CmdBase
|
||||
from dvc.cli.utils import append_doc_link, fix_subparsers
|
||||
from dvc.exceptions import DvcException
|
||||
from dvc.ui import ui
|
||||
|
||||
@@ -0,0 +1,454 @@
|
||||
import argparse
|
||||
import json
|
||||
import logging
|
||||
import os
|
||||
|
||||
from funcy import first
|
||||
|
||||
from dvc.cli import completion
|
||||
from dvc.cli.command import CmdBase
|
||||
from dvc.cli.utils import append_doc_link, fix_subparsers
|
||||
from dvc.exceptions import DvcException
|
||||
from dvc.ui import ui
|
||||
from dvc.utils import format_link
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
def _show_json(renderers, split=False):
|
||||
from dvc.render.convert import to_json
|
||||
|
||||
result = {
|
||||
renderer.name: to_json(renderer, split) for renderer in renderers
|
||||
}
|
||||
ui.write_json(result)
|
||||
|
||||
|
||||
def _adjust_vega_renderers(renderers):
|
||||
from dvc.render import VERSION_FIELD
|
||||
from dvc_render import VegaRenderer
|
||||
|
||||
for r in renderers:
|
||||
if isinstance(r, VegaRenderer):
|
||||
if _data_versions_count(r) > 1:
|
||||
summary = _summarize_version_infos(r)
|
||||
for dp in r.datapoints:
|
||||
vi = dp.pop(VERSION_FIELD, {})
|
||||
keys = list(vi.keys())
|
||||
for key in keys:
|
||||
if not (len(summary.get(key, set())) > 1):
|
||||
vi.pop(key)
|
||||
if vi:
|
||||
dp["rev"] = "::".join(vi.values())
|
||||
else:
|
||||
for dp in r.datapoints:
|
||||
dp.pop(VERSION_FIELD, {})
|
||||
|
||||
|
||||
def _summarize_version_infos(renderer):
|
||||
from collections import defaultdict
|
||||
|
||||
from dvc.render import VERSION_FIELD
|
||||
|
||||
result = defaultdict(set)
|
||||
|
||||
for dp in renderer.datapoints:
|
||||
for key, value in dp.get(VERSION_FIELD, {}).items():
|
||||
result[key].add(value)
|
||||
return dict(result)
|
||||
|
||||
|
||||
def _data_versions_count(renderer):
|
||||
from itertools import product
|
||||
|
||||
summary = _summarize_version_infos(renderer)
|
||||
x = product(summary.get("filename", {None}), summary.get("field", {None}))
|
||||
return len(set(x))
|
||||
|
||||
|
||||
def _filter_unhandled_renderers(renderers):
|
||||
# filtering out renderers currently unhandled by vscode extension
|
||||
from dvc_render import VegaRenderer
|
||||
|
||||
def _is_json_viable(r):
|
||||
return not (
|
||||
isinstance(r, VegaRenderer) and _data_versions_count(r) > 1
|
||||
)
|
||||
|
||||
return list(filter(_is_json_viable, renderers))
|
||||
|
||||
|
||||
class CmdPlots(CmdBase):
|
||||
def _func(self, *args, **kwargs):
|
||||
raise NotImplementedError
|
||||
|
||||
def _props(self):
|
||||
from dvc.schema import PLOT_PROPS
|
||||
|
||||
# Pass only props specified by user, to not shadow ones from plot def
|
||||
props = {p: getattr(self.args, p) for p in PLOT_PROPS}
|
||||
return {k: v for k, v in props.items() if v is not None}
|
||||
|
||||
def _config_files(self):
|
||||
config_files = None
|
||||
if self.args.from_config:
|
||||
config_files = {self.args.from_config}
|
||||
return config_files
|
||||
|
||||
def _html_template_path(self):
|
||||
html_template_path = self.args.html_template
|
||||
if not html_template_path:
|
||||
html_template_path = self.repo.config.get("plots", {}).get(
|
||||
"html_template", None
|
||||
)
|
||||
if html_template_path and not os.path.isabs(html_template_path):
|
||||
html_template_path = os.path.join(
|
||||
self.repo.dvc_dir, html_template_path
|
||||
)
|
||||
return html_template_path
|
||||
|
||||
def run(self):
|
||||
from pathlib import Path
|
||||
|
||||
from dvc.render.match import match_defs_renderers
|
||||
from dvc_render import render_html
|
||||
|
||||
if self.args.show_vega:
|
||||
if not self.args.targets:
|
||||
logger.error("please specify a target for `--show-vega`")
|
||||
return 1
|
||||
if len(self.args.targets) > 1:
|
||||
logger.error(
|
||||
"you can only specify one target for `--show-vega`"
|
||||
)
|
||||
return 1
|
||||
if self.args.json:
|
||||
logger.error(
|
||||
"'--show-vega' and '--json' are mutually exclusive "
|
||||
"options."
|
||||
)
|
||||
return 1
|
||||
|
||||
try:
|
||||
plots_data = self._func(
|
||||
targets=self.args.targets,
|
||||
props=self._props(),
|
||||
config_files=self._config_files(),
|
||||
)
|
||||
|
||||
if not plots_data:
|
||||
ui.error_write(
|
||||
"No plots were loaded, "
|
||||
"visualization file will not be created."
|
||||
)
|
||||
|
||||
out: str = self.args.out or self.repo.config.get("plots", {}).get(
|
||||
"out_dir", "dvc_plots"
|
||||
)
|
||||
|
||||
renderers_out = (
|
||||
out if self.args.json else os.path.join(out, "static")
|
||||
)
|
||||
|
||||
renderers = match_defs_renderers(
|
||||
data=plots_data,
|
||||
out=renderers_out,
|
||||
templates_dir=self.repo.plots.templates_dir,
|
||||
)
|
||||
if self.args.json:
|
||||
renderers = _filter_unhandled_renderers(renderers)
|
||||
_show_json(renderers, self.args.split)
|
||||
return 0
|
||||
|
||||
_adjust_vega_renderers(renderers)
|
||||
|
||||
if self.args.show_vega:
|
||||
renderer = first(filter(lambda r: r.TYPE == "vega", renderers))
|
||||
if renderer:
|
||||
ui.write_json(json.loads(renderer.get_filled_template()))
|
||||
return 0
|
||||
|
||||
output_file: Path = (Path.cwd() / out).resolve() / "index.html"
|
||||
|
||||
if renderers:
|
||||
render_html(
|
||||
renderers=renderers,
|
||||
output_file=output_file,
|
||||
template_path=self._html_template_path(),
|
||||
)
|
||||
|
||||
ui.write(output_file.as_uri())
|
||||
auto_open = self.repo.config["plots"].get("auto_open", False)
|
||||
if self.args.open or auto_open:
|
||||
if not auto_open:
|
||||
ui.write(
|
||||
"To enable auto opening, you can run:\n"
|
||||
"\n"
|
||||
"\tdvc config plots.auto_open true"
|
||||
)
|
||||
return ui.open_browser(output_file)
|
||||
|
||||
return 0
|
||||
|
||||
except DvcException:
|
||||
logger.exception("")
|
||||
return 1
|
||||
|
||||
|
||||
class CmdPlotsShow(CmdPlots):
|
||||
UNINITIALIZED = True
|
||||
|
||||
def _func(self, *args, **kwargs):
|
||||
return self.repo.plots.show(*args, **kwargs)
|
||||
|
||||
|
||||
class CmdPlotsDiff(CmdPlots):
|
||||
UNINITIALIZED = True
|
||||
|
||||
def _func(self, *args, **kwargs):
|
||||
return self.repo.plots.diff(
|
||||
*args,
|
||||
revs=self.args.revisions,
|
||||
experiment=self.args.experiment,
|
||||
**kwargs,
|
||||
)
|
||||
|
||||
|
||||
class CmdPlotsModify(CmdPlots):
|
||||
def run(self):
|
||||
self.repo.plots.modify(
|
||||
self.args.target, props=self._props(), unset=self.args.unset
|
||||
)
|
||||
return 0
|
||||
|
||||
|
||||
class CmdPlotsTemplates(CmdBase):
|
||||
def run(self):
|
||||
from dvc.exceptions import InvalidArgumentError
|
||||
from dvc_render.vega_templates import TEMPLATES
|
||||
|
||||
try:
|
||||
target = self.args.template
|
||||
if target:
|
||||
for template in TEMPLATES:
|
||||
if target == template.DEFAULT_NAME:
|
||||
ui.write_json(template.DEFAULT_CONTENT)
|
||||
return 0
|
||||
raise InvalidArgumentError(f"Unexpected template: {target}.")
|
||||
|
||||
else:
|
||||
for template in TEMPLATES:
|
||||
ui.write(template.DEFAULT_NAME)
|
||||
|
||||
return 0
|
||||
except DvcException:
|
||||
logger.exception("")
|
||||
return 1
|
||||
|
||||
|
||||
def add_parser(subparsers, parent_parser):
|
||||
PLOTS_HELP = "Commands to visualize and compare plot data."
|
||||
|
||||
plots_parser = subparsers.add_parser(
|
||||
"plots",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(PLOTS_HELP, "plots"),
|
||||
help=PLOTS_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
plots_subparsers = plots_parser.add_subparsers(
|
||||
dest="cmd",
|
||||
help="Use `dvc plots CMD --help` to display command-specific help.",
|
||||
)
|
||||
|
||||
fix_subparsers(plots_subparsers)
|
||||
|
||||
SHOW_HELP = (
|
||||
"Generate plots from target files or from `plots`"
|
||||
" definitions in `dvc.yaml`."
|
||||
)
|
||||
plots_show_parser = plots_subparsers.add_parser(
|
||||
"show",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(SHOW_HELP, "plots/show"),
|
||||
help=SHOW_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
plots_show_parser.add_argument(
|
||||
"targets",
|
||||
nargs="*",
|
||||
help=(
|
||||
"Plots files or plot IDs from `dvc.yaml` to visualize. "
|
||||
"Shows all plots by default."
|
||||
),
|
||||
).complete = completion.FILE
|
||||
_add_props_arguments(plots_show_parser)
|
||||
_add_output_argument(plots_show_parser)
|
||||
_add_ui_arguments(plots_show_parser)
|
||||
plots_show_parser.set_defaults(func=CmdPlotsShow)
|
||||
|
||||
PLOTS_DIFF_HELP = (
|
||||
"Show multiple versions of a plot by overlaying them "
|
||||
"in a single image."
|
||||
)
|
||||
plots_diff_parser = plots_subparsers.add_parser(
|
||||
"diff",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(PLOTS_DIFF_HELP, "plots/diff"),
|
||||
help=PLOTS_DIFF_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
plots_diff_parser.add_argument(
|
||||
"--targets",
|
||||
nargs="*",
|
||||
help=(
|
||||
"Specific plots to visualize. "
|
||||
"Accepts any file path or plot name from `dvc.yaml` file. "
|
||||
"Shows all tracked plots by default."
|
||||
),
|
||||
metavar="<paths>",
|
||||
).complete = completion.FILE
|
||||
plots_diff_parser.add_argument(
|
||||
"-e",
|
||||
"--experiment",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help=argparse.SUPPRESS,
|
||||
)
|
||||
plots_diff_parser.add_argument(
|
||||
"revisions", nargs="*", default=None, help="Git commits to plot from"
|
||||
)
|
||||
_add_props_arguments(plots_diff_parser)
|
||||
_add_output_argument(plots_diff_parser)
|
||||
_add_ui_arguments(plots_diff_parser)
|
||||
plots_diff_parser.set_defaults(func=CmdPlotsDiff)
|
||||
|
||||
PLOTS_MODIFY_HELP = (
|
||||
"Modify display properties of data-series plots "
|
||||
"defined in stages (has no effect on image plots)."
|
||||
)
|
||||
plots_modify_parser = plots_subparsers.add_parser(
|
||||
"modify",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(PLOTS_MODIFY_HELP, "plots/modify"),
|
||||
help=PLOTS_MODIFY_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
plots_modify_parser.add_argument(
|
||||
"target",
|
||||
help="Plots file to set properties for (defined at the stage level).",
|
||||
).complete = completion.FILE
|
||||
_add_props_arguments(plots_modify_parser)
|
||||
plots_modify_parser.add_argument(
|
||||
"--unset",
|
||||
nargs="*",
|
||||
metavar="<property>",
|
||||
help="Unset one or more display properties.",
|
||||
)
|
||||
plots_modify_parser.set_defaults(func=CmdPlotsModify)
|
||||
|
||||
TEMPLATES_HELP = (
|
||||
"List built-in plots templates or show JSON specification for one."
|
||||
)
|
||||
plots_templates_parser = plots_subparsers.add_parser(
|
||||
"templates",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(TEMPLATES_HELP, "plots/templates"),
|
||||
help=TEMPLATES_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
plots_templates_parser.add_argument(
|
||||
"template",
|
||||
default=None,
|
||||
nargs="?",
|
||||
help=(
|
||||
"Template for which to show JSON specification. "
|
||||
"List all template names by default."
|
||||
),
|
||||
)
|
||||
plots_templates_parser.set_defaults(func=CmdPlotsTemplates)
|
||||
|
||||
|
||||
def _add_props_arguments(parser):
|
||||
parser.add_argument(
|
||||
"-t",
|
||||
"--template",
|
||||
nargs="?",
|
||||
default=None,
|
||||
help=(
|
||||
"Special JSON or HTML schema file to inject with the data. "
|
||||
"See {}".format(
|
||||
format_link("https://man.dvc.org/plots#plot-templates")
|
||||
)
|
||||
),
|
||||
metavar="<path>",
|
||||
).complete = completion.FILE
|
||||
parser.add_argument(
|
||||
"-x", default=None, help="Field name for X axis.", metavar="<field>"
|
||||
)
|
||||
parser.add_argument(
|
||||
"-y", default=None, help="Field name for Y axis.", metavar="<field>"
|
||||
)
|
||||
parser.add_argument(
|
||||
"--no-header",
|
||||
action="store_false",
|
||||
dest="header",
|
||||
default=None, # Use default None to distinguish when it's not used
|
||||
help="Provided CSV or TSV datafile does not have a header.",
|
||||
)
|
||||
parser.add_argument(
|
||||
"--title", default=None, metavar="<text>", help="Plot title."
|
||||
)
|
||||
parser.add_argument(
|
||||
"--x-label", default=None, help="X axis label", metavar="<text>"
|
||||
)
|
||||
parser.add_argument(
|
||||
"--y-label", default=None, help="Y axis label", metavar="<text>"
|
||||
)
|
||||
|
||||
|
||||
def _add_output_argument(parser, typ="plots"):
|
||||
parser.add_argument(
|
||||
"-o",
|
||||
"--out",
|
||||
default=None,
|
||||
help=f"Directory to save {typ} to.",
|
||||
metavar="<path>",
|
||||
).complete = completion.DIR
|
||||
|
||||
|
||||
def _add_ui_arguments(parser):
|
||||
parser.add_argument(
|
||||
"--show-vega",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Show output in Vega format.",
|
||||
)
|
||||
parser.add_argument(
|
||||
"--json",
|
||||
"--show-json",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help=argparse.SUPPRESS,
|
||||
)
|
||||
parser.add_argument(
|
||||
"--split", action="store_true", default=False, help=argparse.SUPPRESS
|
||||
)
|
||||
parser.add_argument(
|
||||
"--open",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Open plot file directly in the browser.",
|
||||
)
|
||||
parser.add_argument(
|
||||
"--html-template",
|
||||
default=None,
|
||||
help="Custom HTML template for VEGA visualization.",
|
||||
metavar="<path>",
|
||||
)
|
||||
parser.add_argument(
|
||||
"--from-config",
|
||||
default=None,
|
||||
metavar="<path>",
|
||||
help=argparse.SUPPRESS,
|
||||
)
|
||||
@@ -0,0 +1,34 @@
|
||||
import argparse
|
||||
|
||||
from dvc.cli.utils import append_doc_link, fix_subparsers
|
||||
from dvc.commands.queue import kill, logs, remove, start, status, stop
|
||||
|
||||
SUB_COMMANDS = [
|
||||
start,
|
||||
stop,
|
||||
status,
|
||||
logs,
|
||||
remove,
|
||||
kill,
|
||||
]
|
||||
|
||||
|
||||
def add_parser(subparsers, parent_parser):
|
||||
QUEUE_HELP = "Commands to manage experiments queue."
|
||||
|
||||
queue_parser = subparsers.add_parser(
|
||||
"queue",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(QUEUE_HELP, "queue"),
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
help=QUEUE_HELP,
|
||||
)
|
||||
|
||||
queue_subparsers = queue_parser.add_subparsers(
|
||||
dest="cmd",
|
||||
help="Use `dvc queue CMD --help` to display " "command-specific help.",
|
||||
)
|
||||
|
||||
fix_subparsers(queue_subparsers)
|
||||
for cmd in SUB_COMMANDS:
|
||||
cmd.add_parser(queue_subparsers, parent_parser)
|
||||
@@ -0,0 +1,34 @@
|
||||
import argparse
|
||||
import logging
|
||||
|
||||
from dvc.cli.command import CmdBase
|
||||
from dvc.cli.utils import append_doc_link
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
class CmdQueueKill(CmdBase):
|
||||
"""Kill exp task in queue."""
|
||||
|
||||
def run(self):
|
||||
self.repo.experiments.celery_queue.kill(revs=self.args.task)
|
||||
|
||||
return 0
|
||||
|
||||
|
||||
def add_parser(queue_subparsers, parent_parser):
|
||||
QUEUE_KILL_HELP = "Kill actively running experiment queue tasks."
|
||||
queue_kill_parser = queue_subparsers.add_parser(
|
||||
"kill",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(QUEUE_KILL_HELP, "queue/kill"),
|
||||
help=QUEUE_KILL_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
queue_kill_parser.add_argument(
|
||||
"task",
|
||||
nargs="*",
|
||||
help="Tasks in queue to kill.",
|
||||
metavar="<task>",
|
||||
)
|
||||
queue_kill_parser.set_defaults(func=CmdQueueKill)
|
||||
@@ -0,0 +1,56 @@
|
||||
import argparse
|
||||
import logging
|
||||
|
||||
from dvc.cli.command import CmdBase
|
||||
from dvc.cli.utils import append_doc_link
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
class CmdQueueLogs(CmdBase):
|
||||
"""Show output logs for a queued experiment."""
|
||||
|
||||
def run(self):
|
||||
self.repo.experiments.celery_queue.logs(
|
||||
rev=self.args.task,
|
||||
encoding=self.args.encoding,
|
||||
follow=self.args.follow,
|
||||
)
|
||||
|
||||
return 0
|
||||
|
||||
|
||||
def add_parser(queue_subparsers, parent_parser):
|
||||
QUEUE_LOGS_HELP = (
|
||||
"Show output logs for running and completed experiment queue tasks."
|
||||
)
|
||||
queue_logs_parser = queue_subparsers.add_parser(
|
||||
"logs",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(QUEUE_LOGS_HELP, "queue/logs"),
|
||||
help=QUEUE_LOGS_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
queue_logs_parser.add_argument(
|
||||
"-e",
|
||||
"--encoding",
|
||||
help=(
|
||||
"Text encoding for log output. Defaults to system locale encoding."
|
||||
),
|
||||
metavar="<encoding>",
|
||||
)
|
||||
queue_logs_parser.add_argument(
|
||||
"-f",
|
||||
"--follow",
|
||||
help=(
|
||||
"Attach to task and follow additional live output. Only "
|
||||
"applicable if the task is still running."
|
||||
),
|
||||
action="store_true",
|
||||
)
|
||||
queue_logs_parser.add_argument(
|
||||
"task",
|
||||
help="Task to show.",
|
||||
metavar="<task>",
|
||||
)
|
||||
queue_logs_parser.set_defaults(func=CmdQueueLogs)
|
||||
@@ -0,0 +1,95 @@
|
||||
import argparse
|
||||
import logging
|
||||
|
||||
from dvc.cli.command import CmdBase
|
||||
from dvc.cli.utils import append_doc_link
|
||||
from dvc.exceptions import InvalidArgumentError
|
||||
from dvc.ui import ui
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
class CmdQueueRemove(CmdBase):
|
||||
"""Remove exp in queue."""
|
||||
|
||||
def check_arguments(self):
|
||||
clear_flag = any(
|
||||
[
|
||||
self.args.all,
|
||||
self.args.queued,
|
||||
self.args.failed,
|
||||
self.args.success,
|
||||
]
|
||||
)
|
||||
if not (clear_flag ^ bool(self.args.task)):
|
||||
raise InvalidArgumentError(
|
||||
"Either provide an `tasks` argument, or use the "
|
||||
"`--all`, `--queued`, `--failed`, `--success` flag."
|
||||
)
|
||||
|
||||
def run(self):
|
||||
|
||||
self.check_arguments()
|
||||
|
||||
if self.args.all:
|
||||
self.args.queued = True
|
||||
self.args.failed = True
|
||||
self.args.success = True
|
||||
|
||||
if self.args.queued or self.args.failed or self.args.success:
|
||||
removed_list = self.repo.experiments.celery_queue.clear(
|
||||
success=self.args.success,
|
||||
queued=self.args.queued,
|
||||
failed=self.args.failed,
|
||||
)
|
||||
else:
|
||||
removed_list = self.repo.experiments.celery_queue.remove(
|
||||
revs=self.args.task,
|
||||
)
|
||||
|
||||
if removed_list:
|
||||
removed = ", ".join(removed_list)
|
||||
ui.write(f"Removed tasks in queue: {removed}")
|
||||
else:
|
||||
ui.write(f"No tasks found named {self.args.task}")
|
||||
|
||||
return 0
|
||||
|
||||
|
||||
def add_parser(queue_subparsers, parent_parser):
|
||||
|
||||
QUEUE_REMOVE_HELP = "Remove queued and completed tasks from the queue."
|
||||
queue_remove_parser = queue_subparsers.add_parser(
|
||||
"remove",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(QUEUE_REMOVE_HELP, "queue/remove"),
|
||||
help=QUEUE_REMOVE_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
queue_remove_parser.add_argument(
|
||||
"--all",
|
||||
action="store_true",
|
||||
help="Remove all queued and completed tasks from the queue.",
|
||||
)
|
||||
queue_remove_parser.add_argument(
|
||||
"--queued",
|
||||
action="store_true",
|
||||
help="Remove all queued tasks from the queue.",
|
||||
)
|
||||
queue_remove_parser.add_argument(
|
||||
"--success",
|
||||
action="store_true",
|
||||
help="Remove all successful tasks from the queue.",
|
||||
)
|
||||
queue_remove_parser.add_argument(
|
||||
"--failed",
|
||||
action="store_true",
|
||||
help="Remove all failed tasks from the queue.",
|
||||
)
|
||||
queue_remove_parser.add_argument(
|
||||
"task",
|
||||
nargs="*",
|
||||
help="Tasks to remove.",
|
||||
metavar="<task>",
|
||||
)
|
||||
queue_remove_parser.set_defaults(func=CmdQueueRemove)
|
||||
@@ -0,0 +1,48 @@
|
||||
import argparse
|
||||
import logging
|
||||
|
||||
from dvc.cli.command import CmdBase
|
||||
from dvc.cli.utils import append_doc_link
|
||||
from dvc.ui import ui
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
class CmdQueueStart(CmdBase):
|
||||
"""Start exp queue workers."""
|
||||
|
||||
def run(self):
|
||||
started = self.repo.experiments.celery_queue.start_workers(
|
||||
self.args.jobs
|
||||
)
|
||||
|
||||
suffix = "s" if started > 1 else ""
|
||||
ui.write(
|
||||
f"Started '{started}' new experiments task queue worker{suffix}."
|
||||
)
|
||||
|
||||
return 0
|
||||
|
||||
|
||||
def add_parser(queue_subparsers, parent_parser):
|
||||
|
||||
QUEUE_START_HELP = "Start the experiments task queue worker."
|
||||
queue_start_parser = queue_subparsers.add_parser(
|
||||
"start",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(QUEUE_START_HELP, "queue/start"),
|
||||
help=QUEUE_START_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
queue_start_parser.add_argument(
|
||||
"-j",
|
||||
"--jobs",
|
||||
type=int,
|
||||
default=1,
|
||||
help=(
|
||||
"Maximum number of concurrent queue workers to start. "
|
||||
"Defaults to 1."
|
||||
),
|
||||
metavar="<number>",
|
||||
)
|
||||
queue_start_parser.set_defaults(func=CmdQueueStart)
|
||||
@@ -0,0 +1,62 @@
|
||||
import argparse
|
||||
import logging
|
||||
from typing import List, Mapping, Optional
|
||||
|
||||
from dvc.cli.command import CmdBase
|
||||
from dvc.cli.utils import append_doc_link
|
||||
from dvc.compare import TabularData
|
||||
from dvc.ui import ui
|
||||
|
||||
from ..experiments.show import format_time
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
class CmdQueueStatus(CmdBase):
|
||||
"""Show queue task and worker status."""
|
||||
|
||||
def run(self):
|
||||
result: List[
|
||||
Mapping[str, Optional[str]]
|
||||
] = self.repo.experiments.celery_queue.status()
|
||||
if result:
|
||||
all_headers = ["Task", "Name", "Created", "Status"]
|
||||
td = TabularData(all_headers)
|
||||
for exp in result:
|
||||
created = format_time(exp.get("timestamp"))
|
||||
td.append(
|
||||
[
|
||||
exp["rev"][:7],
|
||||
exp.get("name", ""),
|
||||
created,
|
||||
exp["status"],
|
||||
]
|
||||
)
|
||||
td.render()
|
||||
else:
|
||||
ui.write("No experiment tasks in the queue.")
|
||||
ui.write()
|
||||
|
||||
worker_status = self.repo.experiments.celery_queue.worker_status()
|
||||
active_count = len(
|
||||
[name for name, task in worker_status.items() if task]
|
||||
)
|
||||
idle_count = len(worker_status) - active_count
|
||||
|
||||
ui.write(f"Worker status: {active_count} active, {idle_count} idle")
|
||||
|
||||
return 0
|
||||
|
||||
|
||||
def add_parser(queue_subparsers, parent_parser):
|
||||
QUEUE_STATUS_HELP = (
|
||||
"Show the status of experiments queue tasks and workers."
|
||||
)
|
||||
queue_status_parser = queue_subparsers.add_parser(
|
||||
"status",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(QUEUE_STATUS_HELP, "queue/status"),
|
||||
help=QUEUE_STATUS_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
queue_status_parser.set_defaults(func=CmdQueueStatus)
|
||||
@@ -0,0 +1,43 @@
|
||||
import argparse
|
||||
import logging
|
||||
|
||||
from dvc.cli.command import CmdBase
|
||||
from dvc.cli.utils import append_doc_link
|
||||
from dvc.ui import ui
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
class CmdQueueStop(CmdBase):
|
||||
"""Stop exp queue workers."""
|
||||
|
||||
def run(self):
|
||||
self.repo.experiments.celery_queue.shutdown(kill=self.args.kill)
|
||||
|
||||
if self.args.kill:
|
||||
ui.write(
|
||||
"All running tasks in the queue have been killed."
|
||||
"Queue workers are stopping."
|
||||
)
|
||||
else:
|
||||
ui.write("Queue workers will stop after running tasks finish.")
|
||||
|
||||
return 0
|
||||
|
||||
|
||||
def add_parser(queue_subparsers, parent_parser):
|
||||
|
||||
QUEUE_STOP_HELP = "Stop all experiments task queue workers."
|
||||
queue_stop_parser = queue_subparsers.add_parser(
|
||||
"stop",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(QUEUE_STOP_HELP, "queue/stop"),
|
||||
help=QUEUE_STOP_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
queue_stop_parser.add_argument(
|
||||
"--kill",
|
||||
action="store_true",
|
||||
help="Kill all running tasks before stopping the queue workers.",
|
||||
)
|
||||
queue_stop_parser.set_defaults(func=CmdQueueStop)
|
||||
@@ -1,7 +1,7 @@
|
||||
import argparse
|
||||
|
||||
from dvc.command.base import append_doc_link, fix_subparsers
|
||||
from dvc.command.config import CmdConfig
|
||||
from dvc.cli.utils import append_doc_link, fix_subparsers
|
||||
from dvc.commands.config import CmdConfig
|
||||
from dvc.ui import ui
|
||||
from dvc.utils import format_link
|
||||
|
||||
@@ -113,8 +113,8 @@ class CmdRemoteDefault(CmdRemote):
|
||||
class CmdRemoteList(CmdRemote):
|
||||
def run(self):
|
||||
conf = self.config.read(self.args.level)
|
||||
for name, conf in conf["remote"].items():
|
||||
ui.write(name, conf["url"], sep="\t")
|
||||
for name, remote_conf in conf["remote"].items():
|
||||
ui.write(name, remote_conf["url"], sep="\t")
|
||||
return 0
|
||||
|
||||
|
||||
@@ -151,7 +151,7 @@ class CmdRemoteRename(CmdRemote):
|
||||
|
||||
|
||||
def add_parser(subparsers, parent_parser):
|
||||
from dvc.command.config import parent_config_parser
|
||||
from dvc.commands.config import parent_config_parser
|
||||
|
||||
REMOTE_HELP = "Set up and manage data remotes."
|
||||
remote_parser = subparsers.add_parser(
|
||||
@@ -1,8 +1,9 @@
|
||||
import argparse
|
||||
import logging
|
||||
|
||||
from dvc.command import completion
|
||||
from dvc.command.base import CmdBase, append_doc_link
|
||||
from dvc.cli import completion
|
||||
from dvc.cli.command import CmdBase
|
||||
from dvc.cli.utils import append_doc_link
|
||||
from dvc.exceptions import DvcException
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
@@ -1,21 +1,22 @@
|
||||
import argparse
|
||||
|
||||
from dvc.command import completion
|
||||
from dvc.command.base import CmdBase, append_doc_link
|
||||
from dvc.command.status import CmdDataStatus
|
||||
from dvc.cli import completion
|
||||
from dvc.cli.command import CmdBase
|
||||
from dvc.cli.utils import append_doc_link
|
||||
from dvc.commands.status import CmdDataStatus
|
||||
|
||||
|
||||
class CmdRepro(CmdBase):
|
||||
def run(self):
|
||||
from dvc.ui import ui
|
||||
|
||||
stages = self.repo.reproduce(**self._repro_kwargs)
|
||||
stages = self.repo.reproduce(
|
||||
**self._common_kwargs, **self._repro_kwargs
|
||||
)
|
||||
if len(stages) == 0:
|
||||
ui.write(CmdDataStatus.UP_TO_DATE_MSG)
|
||||
else:
|
||||
ui.write(
|
||||
"Use `dvc push` to send your updates to " "remote storage."
|
||||
)
|
||||
ui.write("Use `dvc push` to send your updates to remote storage.")
|
||||
|
||||
if self.args.metrics:
|
||||
from dvc.compare import show_metrics
|
||||
@@ -26,7 +27,7 @@ class CmdRepro(CmdBase):
|
||||
return 0
|
||||
|
||||
@property
|
||||
def _repro_kwargs(self):
|
||||
def _common_kwargs(self):
|
||||
return {
|
||||
"targets": self.args.targets,
|
||||
"single_item": self.args.single_item,
|
||||
@@ -35,12 +36,17 @@ class CmdRepro(CmdBase):
|
||||
"interactive": self.args.interactive,
|
||||
"pipeline": self.args.pipeline,
|
||||
"all_pipelines": self.args.all_pipelines,
|
||||
"run_cache": not self.args.no_run_cache,
|
||||
"no_commit": self.args.no_commit,
|
||||
"downstream": self.args.downstream,
|
||||
"recursive": self.args.recursive,
|
||||
"force_downstream": self.args.force_downstream,
|
||||
"pull": self.args.pull,
|
||||
}
|
||||
|
||||
@property
|
||||
def _repro_kwargs(self):
|
||||
return {
|
||||
"run_cache": not self.args.no_run_cache,
|
||||
"no_commit": self.args.no_commit,
|
||||
"glob": self.args.glob,
|
||||
}
|
||||
|
||||
@@ -58,6 +64,13 @@ def add_arguments(repro_parser):
|
||||
default=False,
|
||||
help="Reproduce even if dependencies were not changed.",
|
||||
)
|
||||
repro_parser.add_argument(
|
||||
"-i",
|
||||
"--interactive",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Ask for confirmation before reproducing each stage.",
|
||||
)
|
||||
repro_parser.add_argument(
|
||||
"-s",
|
||||
"--single-item",
|
||||
@@ -66,27 +79,6 @@ def add_arguments(repro_parser):
|
||||
help="Reproduce only single data item without recursive dependencies "
|
||||
"check.",
|
||||
)
|
||||
repro_parser.add_argument(
|
||||
"-m",
|
||||
"--metrics",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Show metrics after reproduction.",
|
||||
)
|
||||
repro_parser.add_argument(
|
||||
"--dry",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Only print the commands that would be executed without "
|
||||
"actually executing.",
|
||||
)
|
||||
repro_parser.add_argument(
|
||||
"-i",
|
||||
"--interactive",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Ask for confirmation before reproducing each stage.",
|
||||
)
|
||||
repro_parser.add_argument(
|
||||
"-p",
|
||||
"--pipeline",
|
||||
@@ -110,13 +102,17 @@ def add_arguments(repro_parser):
|
||||
help="Reproduce all stages in the specified directory.",
|
||||
)
|
||||
repro_parser.add_argument(
|
||||
"--no-run-cache",
|
||||
"-m",
|
||||
"--metrics",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help=(
|
||||
"Execute stage commands even if they have already been run with "
|
||||
"the same command/dependencies/outputs/etc before."
|
||||
),
|
||||
help="Show metrics after reproduction.",
|
||||
)
|
||||
repro_parser.add_argument(
|
||||
"--downstream",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Start from the specified stages when reproducing pipelines.",
|
||||
)
|
||||
repro_parser.add_argument(
|
||||
"--force-downstream",
|
||||
@@ -125,18 +121,6 @@ def add_arguments(repro_parser):
|
||||
help="Reproduce all descendants of a changed stage even if their "
|
||||
"direct dependencies didn't change.",
|
||||
)
|
||||
repro_parser.add_argument(
|
||||
"--no-commit",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Don't put files/directories into cache.",
|
||||
)
|
||||
repro_parser.add_argument(
|
||||
"--downstream",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Start from the specified stages when reproducing pipelines.",
|
||||
)
|
||||
repro_parser.add_argument(
|
||||
"--pull",
|
||||
action="store_true",
|
||||
@@ -147,10 +131,11 @@ def add_arguments(repro_parser):
|
||||
),
|
||||
)
|
||||
repro_parser.add_argument(
|
||||
"--glob",
|
||||
"--dry",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Allows targets containing shell-style wildcards.",
|
||||
help="Only print the commands that would be executed without "
|
||||
"actually executing.",
|
||||
)
|
||||
|
||||
|
||||
@@ -165,5 +150,28 @@ def add_parser(subparsers, parent_parser):
|
||||
help=REPRO_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
# repro/exp run shared args
|
||||
add_arguments(repro_parser)
|
||||
# repro only args
|
||||
repro_parser.add_argument(
|
||||
"--glob",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Allows targets containing shell-style wildcards.",
|
||||
)
|
||||
repro_parser.add_argument(
|
||||
"--no-commit",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Don't put files/directories into cache.",
|
||||
)
|
||||
repro_parser.add_argument(
|
||||
"--no-run-cache",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help=(
|
||||
"Execute stage commands even if they have already been run with "
|
||||
"the same command/dependencies/outputs/etc before."
|
||||
),
|
||||
)
|
||||
repro_parser.set_defaults(func=CmdRepro)
|
||||
@@ -1,7 +1,8 @@
|
||||
import argparse
|
||||
import logging
|
||||
|
||||
from dvc.command.base import CmdBaseNoRepo, append_doc_link
|
||||
from dvc.cli.command import CmdBaseNoRepo
|
||||
from dvc.cli.utils import append_doc_link
|
||||
from dvc.utils import relpath
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
@@ -1,8 +1,9 @@
|
||||
import argparse
|
||||
import logging
|
||||
|
||||
from dvc.command.base import CmdBase, append_doc_link
|
||||
from dvc.command.stage import parse_cmd
|
||||
from dvc.cli.command import CmdBase
|
||||
from dvc.cli.utils import append_doc_link
|
||||
from dvc.commands.stage import parse_cmd
|
||||
from dvc.exceptions import DvcException
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
@@ -52,7 +53,7 @@ class CmdRun(CmdBase):
|
||||
|
||||
|
||||
def add_parser(subparsers, parent_parser):
|
||||
from dvc.command.stage import _add_common_args
|
||||
from dvc.commands.stage import _add_common_args
|
||||
|
||||
RUN_HELP = (
|
||||
"Generate a dvc.yaml file from a command and execute the command."
|
||||
@@ -68,12 +69,25 @@ def add_parser(subparsers, parent_parser):
|
||||
run_parser.add_argument(
|
||||
"--file", metavar="<filename>", help=argparse.SUPPRESS
|
||||
)
|
||||
run_parser.add_argument(
|
||||
"--single-stage",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help=argparse.SUPPRESS,
|
||||
)
|
||||
_add_common_args(run_parser)
|
||||
run_parser.add_argument(
|
||||
"--no-exec",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Only create dvc.yaml without actually running it.",
|
||||
)
|
||||
run_parser.add_argument(
|
||||
"--no-commit",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Don't put files/directories into cache.",
|
||||
)
|
||||
run_parser.add_argument(
|
||||
"--no-run-cache",
|
||||
action="store_true",
|
||||
@@ -83,17 +97,4 @@ def add_parser(subparsers, parent_parser):
|
||||
"with the same command/dependencies/outputs/etc before."
|
||||
),
|
||||
)
|
||||
run_parser.add_argument(
|
||||
"--no-commit",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Don't put files/directories into cache.",
|
||||
)
|
||||
run_parser.add_argument(
|
||||
"--single-stage",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help=argparse.SUPPRESS,
|
||||
)
|
||||
_add_common_args(run_parser)
|
||||
run_parser.set_defaults(func=CmdRun)
|
||||
@@ -3,8 +3,9 @@ import logging
|
||||
from itertools import chain, filterfalse
|
||||
from typing import TYPE_CHECKING, Dict, Iterable, List
|
||||
|
||||
from dvc.command import completion
|
||||
from dvc.command.base import CmdBase, append_doc_link, fix_subparsers
|
||||
from dvc.cli import completion
|
||||
from dvc.cli.command import CmdBase
|
||||
from dvc.cli.utils import append_doc_link, fix_subparsers
|
||||
from dvc.utils.cli_parse import parse_params
|
||||
from dvc.utils.humanize import truncate_text
|
||||
|
||||
@@ -75,7 +76,7 @@ class CmdStageList(CmdBase):
|
||||
# removing duplicates while maintaining order
|
||||
collected = chain.from_iterable(
|
||||
self.repo.stage.collect(
|
||||
target=target, recursive=self.args.recursive, accept_group=True
|
||||
target=target, recursive=self.args.recursive
|
||||
)
|
||||
for target in self.args.targets
|
||||
)
|
||||
@@ -93,9 +94,7 @@ class CmdStageList(CmdBase):
|
||||
self.repo.stage_collection_error_handler = log_error
|
||||
|
||||
stages = self._get_stages()
|
||||
names_only = self.args.names_only
|
||||
|
||||
data = prepare_stages_data(stages, description=not names_only)
|
||||
data = prepare_stages_data(stages, description=not self.args.name_only)
|
||||
ui.table(data.items())
|
||||
|
||||
return 0
|
||||
@@ -138,6 +137,13 @@ class CmdStageAdd(CmdBase):
|
||||
|
||||
|
||||
def _add_common_args(parser):
|
||||
parser.add_argument(
|
||||
"-f",
|
||||
"--force",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Overwrite existing stage",
|
||||
)
|
||||
parser.add_argument(
|
||||
"-d",
|
||||
"--deps",
|
||||
@@ -146,6 +152,14 @@ def _add_common_args(parser):
|
||||
help="Declare dependencies for reproducible cmd.",
|
||||
metavar="<path>",
|
||||
).complete = completion.FILE
|
||||
parser.add_argument(
|
||||
"-p",
|
||||
"--params",
|
||||
action="append",
|
||||
default=[],
|
||||
help="Declare parameter to use as additional dependency.",
|
||||
metavar="[<filename>:]<params_list>",
|
||||
).complete = completion.FILE
|
||||
parser.add_argument(
|
||||
"-o",
|
||||
"--outs",
|
||||
@@ -164,13 +178,36 @@ def _add_common_args(parser):
|
||||
metavar="<filename>",
|
||||
).complete = completion.FILE
|
||||
parser.add_argument(
|
||||
"-p",
|
||||
"--params",
|
||||
"-c",
|
||||
"--checkpoints",
|
||||
action="append",
|
||||
default=[],
|
||||
help="Declare parameter to use as additional dependency.",
|
||||
metavar="[<filename>:]<params_list>",
|
||||
help="Declare checkpoint output file or directory for 'dvc exp run'. "
|
||||
"Not compatible with 'dvc repro'.",
|
||||
metavar="<filename>",
|
||||
).complete = completion.FILE
|
||||
parser.add_argument(
|
||||
"--external",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Allow outputs that are outside of the DVC repository.",
|
||||
)
|
||||
parser.add_argument(
|
||||
"--outs-persist",
|
||||
action="append",
|
||||
default=[],
|
||||
help="Declare output file or directory that will not be "
|
||||
"removed upon repro.",
|
||||
metavar="<filename>",
|
||||
)
|
||||
parser.add_argument(
|
||||
"--outs-persist-no-cache",
|
||||
action="append",
|
||||
default=[],
|
||||
help="Declare output file or directory that will not be "
|
||||
"removed upon repro (do not put into DVC cache).",
|
||||
metavar="<filename>",
|
||||
)
|
||||
parser.add_argument(
|
||||
"-m",
|
||||
"--metrics",
|
||||
@@ -213,7 +250,7 @@ def _add_common_args(parser):
|
||||
"--live-no-summary",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Signal dvclive logger to not dump latest metrics file.",
|
||||
help=argparse.SUPPRESS,
|
||||
)
|
||||
parser.add_argument(
|
||||
"--live-no-html",
|
||||
@@ -227,50 +264,12 @@ def _add_common_args(parser):
|
||||
help="Directory within your repo to run your command in.",
|
||||
metavar="<path>",
|
||||
)
|
||||
parser.add_argument(
|
||||
"-f",
|
||||
"--force",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Overwrite existing stage",
|
||||
)
|
||||
parser.add_argument(
|
||||
"--outs-persist",
|
||||
action="append",
|
||||
default=[],
|
||||
help="Declare output file or directory that will not be "
|
||||
"removed upon repro.",
|
||||
metavar="<filename>",
|
||||
)
|
||||
parser.add_argument(
|
||||
"--outs-persist-no-cache",
|
||||
action="append",
|
||||
default=[],
|
||||
help="Declare output file or directory that will not be "
|
||||
"removed upon repro (do not put into DVC cache).",
|
||||
metavar="<filename>",
|
||||
)
|
||||
parser.add_argument(
|
||||
"-c",
|
||||
"--checkpoints",
|
||||
action="append",
|
||||
default=[],
|
||||
help="Declare checkpoint output file or directory for 'dvc exp run'. "
|
||||
"Not compatible with 'dvc repro'.",
|
||||
metavar="<filename>",
|
||||
).complete = completion.FILE
|
||||
parser.add_argument(
|
||||
"--always-changed",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Always consider this DVC-file as changed.",
|
||||
)
|
||||
parser.add_argument(
|
||||
"--external",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Allow outputs that are outside of the DVC repository.",
|
||||
)
|
||||
parser.add_argument(
|
||||
"--desc",
|
||||
type=str,
|
||||
@@ -357,6 +356,7 @@ def add_parser(subparsers, parent_parser):
|
||||
help="List all stages inside the specified directory.",
|
||||
)
|
||||
stage_list_parser.add_argument(
|
||||
"--name-only",
|
||||
"--names-only",
|
||||
action="store_true",
|
||||
default=False,
|
||||
@@ -1,6 +1,6 @@
|
||||
import logging
|
||||
|
||||
from dvc.command.data_sync import CmdDataBase
|
||||
from dvc.commands.data_sync import CmdDataBase
|
||||
from dvc.exceptions import DvcException
|
||||
from dvc.ui import ui
|
||||
from dvc.utils import format_link
|
||||
@@ -1,8 +1,9 @@
|
||||
import argparse
|
||||
import logging
|
||||
|
||||
from dvc.command import completion
|
||||
from dvc.command.base import CmdBase, append_doc_link
|
||||
from dvc.cli import completion
|
||||
from dvc.cli.command import CmdBase
|
||||
from dvc.cli.utils import append_doc_link
|
||||
from dvc.exceptions import DvcException
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
@@ -1,8 +1,9 @@
|
||||
import argparse
|
||||
import logging
|
||||
|
||||
from dvc.command import completion
|
||||
from dvc.command.base import CmdBase, append_doc_link
|
||||
from dvc.cli import completion
|
||||
from dvc.cli.command import CmdBase
|
||||
from dvc.cli.utils import append_doc_link
|
||||
from dvc.exceptions import DvcException
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
@@ -17,6 +18,7 @@ class CmdUpdate(CmdBase):
|
||||
rev=self.args.rev,
|
||||
recursive=self.args.recursive,
|
||||
to_remote=self.args.to_remote,
|
||||
no_download=self.args.no_download,
|
||||
remote=self.args.remote,
|
||||
jobs=self.args.jobs,
|
||||
)
|
||||
@@ -27,7 +29,10 @@ class CmdUpdate(CmdBase):
|
||||
|
||||
|
||||
def add_parser(subparsers, parent_parser):
|
||||
UPDATE_HELP = "Update data artifacts imported from other DVC repositories."
|
||||
UPDATE_HELP = (
|
||||
"Update data artifact imported (via dvc import or dvc import-url) "
|
||||
"from an external DVC repository or URL."
|
||||
)
|
||||
update_parser = subparsers.add_parser(
|
||||
"update",
|
||||
parents=[parent_parser],
|
||||
@@ -51,6 +56,13 @@ def add_parser(subparsers, parent_parser):
|
||||
default=False,
|
||||
help="Update all stages in the specified directory.",
|
||||
)
|
||||
update_parser.add_argument(
|
||||
"--no-download",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Update .dvc file hash value(s)"
|
||||
" but do not download the file(s).",
|
||||
)
|
||||
update_parser.add_argument(
|
||||
"--to-remote",
|
||||
action="store_true",
|
||||
@@ -70,7 +82,6 @@ def add_parser(subparsers, parent_parser):
|
||||
help=(
|
||||
"Number of jobs to run simultaneously. "
|
||||
"The default value is 4 * cpu_count(). "
|
||||
"For SSH remotes, the default is 4. "
|
||||
),
|
||||
metavar="<number>",
|
||||
)
|
||||
@@ -1,7 +1,8 @@
|
||||
import argparse
|
||||
import logging
|
||||
|
||||
from dvc.command.base import CmdBaseNoRepo, append_doc_link
|
||||
from dvc.cli.command import CmdBaseNoRepo
|
||||
from dvc.cli.utils import append_doc_link
|
||||
from dvc.ui import ui
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
+63
-9
@@ -11,6 +11,7 @@ from typing import (
|
||||
List,
|
||||
Mapping,
|
||||
MutableSequence,
|
||||
Optional,
|
||||
Sequence,
|
||||
Set,
|
||||
Tuple,
|
||||
@@ -21,6 +22,7 @@ from typing import (
|
||||
from funcy import reraise
|
||||
|
||||
if TYPE_CHECKING:
|
||||
from dvc.types import StrPath
|
||||
from dvc.ui.table import CellT
|
||||
|
||||
|
||||
@@ -37,11 +39,21 @@ class TabularData(MutableSequence[Sequence["CellT"]]):
|
||||
self._columns: Dict[str, Column] = {name: Column() for name in columns}
|
||||
self._keys: List[str] = list(columns)
|
||||
self._fill_value = fill_value
|
||||
self._protected: Set[str] = set()
|
||||
|
||||
@property
|
||||
def columns(self) -> List[Column]:
|
||||
return list(map(self.column, self.keys()))
|
||||
|
||||
def is_protected(self, col_name) -> bool:
|
||||
return col_name in self._protected
|
||||
|
||||
def protect(self, *col_names: str):
|
||||
self._protected.update(col_names)
|
||||
|
||||
def unprotect(self, *col_names: str):
|
||||
self._protected = self._protected.difference(col_names)
|
||||
|
||||
def column(self, name: str) -> Column:
|
||||
return self._columns[name]
|
||||
|
||||
@@ -125,9 +137,10 @@ class TabularData(MutableSequence[Sequence["CellT"]]):
|
||||
return len(self.columns), len(self)
|
||||
|
||||
def drop(self, *col_names: str) -> None:
|
||||
for col_name in col_names:
|
||||
self._keys.remove(col_name)
|
||||
self._columns.pop(col_name)
|
||||
for col in col_names:
|
||||
if not self.is_protected(col):
|
||||
self._keys.remove(col)
|
||||
self._columns.pop(col)
|
||||
|
||||
def rename(self, from_col_name: str, to_col_name: str) -> None:
|
||||
self._columns[to_col_name] = self._columns.pop(from_col_name)
|
||||
@@ -153,6 +166,24 @@ class TabularData(MutableSequence[Sequence["CellT"]]):
|
||||
writer.writerow(row)
|
||||
return buff.getvalue()
|
||||
|
||||
def to_parallel_coordinates(
|
||||
self, output_path: "StrPath", color_by: str = None
|
||||
) -> "StrPath":
|
||||
from dvc_render.html import render_html
|
||||
from dvc_render.plotly import ParallelCoordinatesRenderer
|
||||
|
||||
render_html(
|
||||
renderers=[
|
||||
ParallelCoordinatesRenderer(
|
||||
self.as_dict(),
|
||||
color_by=color_by,
|
||||
fill_value=self._fill_value,
|
||||
)
|
||||
],
|
||||
output_file=output_path,
|
||||
)
|
||||
return output_path
|
||||
|
||||
def add_column(self, name: str) -> None:
|
||||
self._columns[name] = Column([self._fill_value] * len(self))
|
||||
self._keys.append(name)
|
||||
@@ -184,7 +215,12 @@ class TabularData(MutableSequence[Sequence["CellT"]]):
|
||||
{k: self._columns[k][i] for k in keys} for i in range(len(self))
|
||||
]
|
||||
|
||||
def dropna(self, axis: str = "rows", how="any"):
|
||||
def dropna(
|
||||
self,
|
||||
axis: str = "rows",
|
||||
how="any",
|
||||
subset: Optional[Iterable[str]] = None,
|
||||
):
|
||||
if axis not in ["rows", "cols"]:
|
||||
raise ValueError(
|
||||
f"Invalid 'axis' value {axis}."
|
||||
@@ -196,13 +232,15 @@ class TabularData(MutableSequence[Sequence["CellT"]]):
|
||||
)
|
||||
|
||||
match_line: Set = set()
|
||||
match = True
|
||||
match_any = True
|
||||
if how == "all":
|
||||
match = False
|
||||
match_any = False
|
||||
|
||||
for n_row, row in enumerate(self):
|
||||
for n_col, col in enumerate(row):
|
||||
if (col == self._fill_value) is match:
|
||||
if subset and self.keys()[n_col] not in subset:
|
||||
continue
|
||||
if (col == self._fill_value) is match_any:
|
||||
if axis == "rows":
|
||||
match_line.add(n_row)
|
||||
break
|
||||
@@ -229,7 +267,12 @@ class TabularData(MutableSequence[Sequence["CellT"]]):
|
||||
else:
|
||||
self.drop(*to_drop)
|
||||
|
||||
def drop_duplicates(self, axis: str = "rows"):
|
||||
def drop_duplicates(
|
||||
self,
|
||||
axis: str = "rows",
|
||||
subset: Optional[Iterable[str]] = None,
|
||||
ignore_empty: bool = True,
|
||||
):
|
||||
if axis not in ["rows", "cols"]:
|
||||
raise ValueError(
|
||||
f"Invalid 'axis' value {axis}."
|
||||
@@ -239,8 +282,12 @@ class TabularData(MutableSequence[Sequence["CellT"]]):
|
||||
if axis == "cols":
|
||||
cols_to_drop: List[str] = []
|
||||
for n_col, col in enumerate(self.columns):
|
||||
if subset and self.keys()[n_col] not in subset:
|
||||
continue
|
||||
# Cast to str because Text is not hashable error
|
||||
unique_vals = {str(x) for x in col if x != self._fill_value}
|
||||
unique_vals = {str(x) for x in col}
|
||||
if ignore_empty and self._fill_value in unique_vals:
|
||||
unique_vals -= {self._fill_value}
|
||||
if len(unique_vals) == 1:
|
||||
cols_to_drop.append(self.keys()[n_col])
|
||||
self.drop(*cols_to_drop)
|
||||
@@ -249,6 +296,13 @@ class TabularData(MutableSequence[Sequence["CellT"]]):
|
||||
unique_rows = []
|
||||
rows_to_drop: List[int] = []
|
||||
for n_row, row in enumerate(self):
|
||||
if subset:
|
||||
row = [
|
||||
col
|
||||
for n_col, col in enumerate(row)
|
||||
if self.keys()[n_col] in subset
|
||||
]
|
||||
|
||||
tuple_row = tuple(row)
|
||||
if tuple_row in unique_rows:
|
||||
rows_to_drop.append(n_row)
|
||||
|
||||
+15
-11
@@ -86,22 +86,21 @@ class Config(dict):
|
||||
def __init__(
|
||||
self, dvc_dir=None, validate=True, fs=None, config=None
|
||||
): # pylint: disable=super-init-not-called
|
||||
from dvc.fs.local import LocalFileSystem
|
||||
from dvc.fs import LocalFileSystem
|
||||
|
||||
self.dvc_dir = dvc_dir
|
||||
self.wfs = LocalFileSystem()
|
||||
self.fs = fs or self.wfs
|
||||
|
||||
if not dvc_dir:
|
||||
try:
|
||||
from dvc.repo import Repo
|
||||
|
||||
self.dvc_dir = os.path.join(Repo.find_dvc_dir())
|
||||
self.dvc_dir = Repo.find_dvc_dir()
|
||||
except NotDvcRepoError:
|
||||
self.dvc_dir = None
|
||||
else:
|
||||
self.dvc_dir = os.path.abspath(os.path.realpath(dvc_dir))
|
||||
|
||||
self.wfs = LocalFileSystem(url=self.dvc_dir)
|
||||
self.fs = fs or self.wfs
|
||||
self.dvc_dir = self.fs.path.abspath(self.fs.path.realpath(dvc_dir))
|
||||
|
||||
self.load(validate=validate, config=config)
|
||||
|
||||
@@ -124,8 +123,8 @@ class Config(dict):
|
||||
}
|
||||
|
||||
if self.dvc_dir is not None:
|
||||
files["repo"] = os.path.join(self.dvc_dir, self.CONFIG)
|
||||
files["local"] = os.path.join(self.dvc_dir, self.CONFIG_LOCAL)
|
||||
files["repo"] = self.fs.path.join(self.dvc_dir, self.CONFIG)
|
||||
files["local"] = self.fs.path.join(self.dvc_dir, self.CONFIG_LOCAL)
|
||||
|
||||
return files
|
||||
|
||||
@@ -188,7 +187,7 @@ class Config(dict):
|
||||
filename = self.files[level]
|
||||
fs = self._get_fs(level)
|
||||
|
||||
logger.debug(f"Writing '{filename}'.")
|
||||
logger.debug("Writing '%s'.", filename)
|
||||
|
||||
fs.makedirs(os.path.dirname(filename))
|
||||
|
||||
@@ -228,7 +227,7 @@ class Config(dict):
|
||||
|
||||
@staticmethod
|
||||
def _to_relpath(conf_dir, path):
|
||||
from dvc.fs.local import localfs
|
||||
from dvc.fs import localfs
|
||||
from dvc.utils import relpath
|
||||
|
||||
from .config_schema import RelPath
|
||||
@@ -266,7 +265,12 @@ class Config(dict):
|
||||
"key_path": func,
|
||||
}
|
||||
},
|
||||
"machine": {str: {"startup_script": func}},
|
||||
"machine": {
|
||||
str: {
|
||||
"startup_script": func,
|
||||
"setup_script": func,
|
||||
}
|
||||
},
|
||||
}
|
||||
return Schema(dirs_schema, extra=ALLOW_EXTRA)(conf)
|
||||
|
||||
|
||||
+32
-2
@@ -78,14 +78,16 @@ REMOTE_COMMON = {
|
||||
"url": str,
|
||||
"checksum_jobs": All(Coerce(int), Range(1)),
|
||||
"jobs": All(Coerce(int), Range(1)),
|
||||
Optional("worktree"): Bool,
|
||||
Optional("no_traverse"): Bool, # obsoleted
|
||||
"verify": Bool,
|
||||
Optional("version_aware"): Bool,
|
||||
}
|
||||
LOCAL_COMMON = {
|
||||
"type": supported_cache_type,
|
||||
Optional("protected", default=False): Bool, # obsoleted
|
||||
"shared": All(Lower, Choices("group")),
|
||||
Optional("slow_link_warning", default=True): Bool,
|
||||
Optional("verify", default=False): Bool,
|
||||
}
|
||||
HTTP_COMMON = {
|
||||
"auth": All(Lower, Choices("basic", "digest", "custom")),
|
||||
@@ -95,6 +97,7 @@ HTTP_COMMON = {
|
||||
"ask_password": Bool,
|
||||
"ssl_verify": Any(Bool, str),
|
||||
"method": str,
|
||||
Optional("verify", default=False): Bool,
|
||||
}
|
||||
WEBDAV_COMMON = {
|
||||
"user": str,
|
||||
@@ -105,6 +108,7 @@ WEBDAV_COMMON = {
|
||||
"key_path": str,
|
||||
"timeout": Coerce(int),
|
||||
"ssl_verify": Any(Bool, str),
|
||||
Optional("verify", default=False): Bool,
|
||||
}
|
||||
|
||||
SCHEMA = {
|
||||
@@ -150,6 +154,8 @@ SCHEMA = {
|
||||
"ssl_verify": Any(Bool, str),
|
||||
"sse": str,
|
||||
"sse_kms_key_id": str,
|
||||
"sse_customer_algorithm": str,
|
||||
"sse_customer_key": str,
|
||||
"acl": str,
|
||||
"grant_read": str,
|
||||
"grant_read_acp": str,
|
||||
@@ -158,11 +164,14 @@ SCHEMA = {
|
||||
"cache_regions": bool,
|
||||
"read_timeout": Coerce(int),
|
||||
"connect_timeout": Coerce(int),
|
||||
Optional("verify", default=False): Bool,
|
||||
**REMOTE_COMMON,
|
||||
},
|
||||
"gs": {
|
||||
"projectname": str,
|
||||
"credentialpath": str,
|
||||
"endpointurl": str,
|
||||
Optional("verify", default=False): Bool,
|
||||
**REMOTE_COMMON,
|
||||
},
|
||||
"ssh": {
|
||||
@@ -175,6 +184,7 @@ SCHEMA = {
|
||||
"timeout": Coerce(int),
|
||||
"gss_auth": Bool,
|
||||
"allow_agent": Bool,
|
||||
Optional("verify", default=False): Bool,
|
||||
**REMOTE_COMMON,
|
||||
},
|
||||
"hdfs": {"user": str, "kerb_ticket": str, **REMOTE_COMMON},
|
||||
@@ -185,6 +195,7 @@ SCHEMA = {
|
||||
"ssl_verify": Any(Bool, str),
|
||||
"token": str,
|
||||
"use_https": Bool,
|
||||
Optional("verify", default=False): Bool,
|
||||
**REMOTE_COMMON,
|
||||
},
|
||||
"azure": {
|
||||
@@ -200,15 +211,18 @@ SCHEMA = {
|
||||
"exclude_visual_studio_code_credential": Bool,
|
||||
"exclude_shared_token_cache_credential": Bool,
|
||||
"exclude_managed_identity_credential": Bool,
|
||||
Optional("verify", default=False): Bool,
|
||||
**REMOTE_COMMON,
|
||||
},
|
||||
"oss": {
|
||||
"oss_key_id": str,
|
||||
"oss_key_secret": str,
|
||||
"oss_endpoint": str,
|
||||
Optional("verify", default=True): Bool,
|
||||
**REMOTE_COMMON,
|
||||
},
|
||||
"gdrive": {
|
||||
"profile": str,
|
||||
"gdrive_use_service_account": Bool,
|
||||
"gdrive_client_id": str,
|
||||
"gdrive_client_secret": str,
|
||||
@@ -216,6 +230,8 @@ SCHEMA = {
|
||||
"gdrive_service_account_user_email": str,
|
||||
"gdrive_service_account_json_file_path": str,
|
||||
Optional("gdrive_trash_only", default=False): Bool,
|
||||
Optional("gdrive_acknowledge_abuse", default=False): Bool,
|
||||
Optional("verify", default=True): Bool,
|
||||
**REMOTE_COMMON,
|
||||
},
|
||||
"http": {**HTTP_COMMON, **REMOTE_COMMON},
|
||||
@@ -248,6 +264,7 @@ SCHEMA = {
|
||||
"instance_gpu": Lower,
|
||||
"ssh_private": str,
|
||||
"startup_script": str,
|
||||
"setup_script": str,
|
||||
},
|
||||
},
|
||||
# section for experimental features
|
||||
@@ -256,7 +273,11 @@ SCHEMA = {
|
||||
# enabled by default. It's of no use, kept for backward compatibility.
|
||||
Optional("parametrization", default=True): Bool,
|
||||
},
|
||||
"plots": {"html_template": str},
|
||||
"plots": {
|
||||
"html_template": str,
|
||||
Optional("auto_open", default=False): Bool,
|
||||
"out_dir": str,
|
||||
},
|
||||
"exp": {
|
||||
"code": str,
|
||||
"data": str,
|
||||
@@ -266,4 +287,13 @@ SCHEMA = {
|
||||
"plots": str,
|
||||
"live": str,
|
||||
},
|
||||
"parsing": {
|
||||
"bool": All(Lower, Choices("store_true", "boolean_optional")),
|
||||
"list": All(Lower, Choices("nargs", "append")),
|
||||
},
|
||||
"hydra": {
|
||||
Optional("enabled", default=False): Bool,
|
||||
"config_dir": str,
|
||||
"config_name": str,
|
||||
},
|
||||
}
|
||||
|
||||
+11
-7
@@ -6,6 +6,7 @@ import os
|
||||
import platform
|
||||
import sys
|
||||
from subprocess import Popen
|
||||
from typing import List
|
||||
|
||||
from dvc.env import DVC_DAEMON
|
||||
from dvc.utils import fix_env, is_binary
|
||||
@@ -42,7 +43,7 @@ def _spawn_windows(cmd, env):
|
||||
|
||||
|
||||
def _spawn_posix(cmd, env):
|
||||
from dvc.main import main
|
||||
from dvc.cli import main
|
||||
|
||||
# NOTE: using os._exit instead of sys.exit, because dvc built
|
||||
# with PyInstaller has trouble with SystemExit exception and throws
|
||||
@@ -81,7 +82,7 @@ def _spawn_posix(cmd, env):
|
||||
|
||||
|
||||
def _spawn(cmd, env):
|
||||
logger.debug(f"Trying to spawn '{cmd}'")
|
||||
logger.debug("Trying to spawn '%s'", cmd)
|
||||
|
||||
if os.name == "nt":
|
||||
_spawn_windows(cmd, env)
|
||||
@@ -90,7 +91,7 @@ def _spawn(cmd, env):
|
||||
else:
|
||||
raise NotImplementedError
|
||||
|
||||
logger.debug(f"Spawned '{cmd}'")
|
||||
logger.debug("Spawned '%s'", cmd)
|
||||
|
||||
|
||||
def daemon(args):
|
||||
@@ -99,15 +100,18 @@ def daemon(args):
|
||||
Args:
|
||||
args (list): list of arguments to append to `dvc daemon` command.
|
||||
"""
|
||||
daemonize(["daemon", "-q"] + args)
|
||||
|
||||
|
||||
def daemonize(cmd: List[str]):
|
||||
if os.environ.get(DVC_DAEMON):
|
||||
logger.debug("skipping launching a new daemon.")
|
||||
return
|
||||
|
||||
cmd = ["daemon", "-q"] + args
|
||||
|
||||
env = fix_env()
|
||||
file_path = os.path.abspath(inspect.stack()[0][1])
|
||||
env["PYTHONPATH"] = os.path.dirname(os.path.dirname(file_path))
|
||||
if not is_binary():
|
||||
file_path = os.path.abspath(inspect.stack()[0][1])
|
||||
env["PYTHONPATH"] = os.path.dirname(os.path.dirname(file_path))
|
||||
env[DVC_DAEMON] = "1"
|
||||
|
||||
_spawn(cmd, env)
|
||||
|
||||
+76
-27
@@ -3,15 +3,37 @@
|
||||
import logging
|
||||
from typing import TYPE_CHECKING, Iterable, Optional
|
||||
|
||||
from dvc.objects.db import get_index
|
||||
from funcy import cached_property
|
||||
|
||||
from dvc_data.hashfile.db import get_index
|
||||
|
||||
if TYPE_CHECKING:
|
||||
from dvc.hash_info import HashInfo
|
||||
from dvc.objects.db.base import ObjectDB
|
||||
from dvc_data.hashfile.db import HashFileDB
|
||||
from dvc_data.hashfile.hash_info import HashInfo
|
||||
from dvc_data.hashfile.status import CompareStatusResult
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
class Remote:
|
||||
def __init__(self, path, fs, **config):
|
||||
self.path = path
|
||||
self.fs = fs
|
||||
|
||||
self.worktree = config.pop("worktree", False)
|
||||
self.config = config
|
||||
|
||||
@cached_property
|
||||
def odb(self):
|
||||
from dvc_data.hashfile.db import get_odb
|
||||
|
||||
path = self.path
|
||||
if self.worktree:
|
||||
path = self.fs.path.join(path, ".dvc", "cache")
|
||||
|
||||
return get_odb(self.fs, path, **self.config)
|
||||
|
||||
|
||||
class DataCloud:
|
||||
"""Class that manages dvc remotes.
|
||||
|
||||
@@ -26,18 +48,23 @@ class DataCloud:
|
||||
def __init__(self, repo):
|
||||
self.repo = repo
|
||||
|
||||
def get_remote_odb(
|
||||
def get_remote(
|
||||
self,
|
||||
name: Optional[str] = None,
|
||||
command: str = "<command>",
|
||||
) -> "ObjectDB":
|
||||
) -> "Remote":
|
||||
from dvc.config import NoRemoteError
|
||||
|
||||
if not name:
|
||||
name = self.repo.config["core"].get("remote")
|
||||
|
||||
if name:
|
||||
return self._init_odb(name)
|
||||
from dvc.fs import get_cloud_fs
|
||||
|
||||
cls, config, fs_path = get_cloud_fs(self.repo, name=name)
|
||||
fs = cls(**config)
|
||||
config["tmp_dir"] = self.repo.index_db_dir
|
||||
return Remote(fs_path, fs, **config)
|
||||
|
||||
if bool(self.repo.config["remote"]):
|
||||
error_msg = (
|
||||
@@ -54,20 +81,46 @@ class DataCloud:
|
||||
|
||||
raise NoRemoteError(error_msg)
|
||||
|
||||
def _init_odb(self, name):
|
||||
from dvc.fs import get_cloud_fs
|
||||
from dvc.objects.db import get_odb
|
||||
def get_remote_odb(
|
||||
self,
|
||||
name: Optional[str] = None,
|
||||
command: str = "<command>",
|
||||
) -> "HashFileDB":
|
||||
remote = self.get_remote(name=name, command=command)
|
||||
return remote.odb
|
||||
|
||||
cls, config, fs_path = get_cloud_fs(self.repo, name=name)
|
||||
config["tmp_dir"] = self.repo.index_db_dir
|
||||
return get_odb(cls(**config), fs_path, **config)
|
||||
def _log_missing(self, status: "CompareStatusResult"):
|
||||
if status.missing:
|
||||
missing_desc = "\n".join(
|
||||
f"name: {hash_info.obj_name}, {hash_info}"
|
||||
for hash_info in status.missing
|
||||
)
|
||||
logger.warning(
|
||||
"Some of the cache files do not exist neither locally "
|
||||
f"nor on remote. Missing cache files:\n{missing_desc}"
|
||||
)
|
||||
|
||||
def transfer(
|
||||
self,
|
||||
src_odb: "HashFileDB",
|
||||
dest_odb: "HashFileDB",
|
||||
objs: Iterable["HashInfo"],
|
||||
**kwargs,
|
||||
):
|
||||
from dvc.exceptions import FileTransferError
|
||||
from dvc_data.hashfile.transfer import TransferError, transfer
|
||||
|
||||
try:
|
||||
return transfer(src_odb, dest_odb, objs, **kwargs)
|
||||
except TransferError as exc:
|
||||
raise FileTransferError(exc.fails) from exc
|
||||
|
||||
def push(
|
||||
self,
|
||||
objs: Iterable["HashInfo"],
|
||||
jobs: Optional[int] = None,
|
||||
remote: Optional[str] = None,
|
||||
odb: Optional["ObjectDB"] = None,
|
||||
odb: Optional["HashFileDB"] = None,
|
||||
):
|
||||
"""Push data items in a cloud-agnostic way.
|
||||
|
||||
@@ -78,17 +131,15 @@ class DataCloud:
|
||||
By default remote from core.remote config option is used.
|
||||
odb: optional ODB to push to. Overrides remote.
|
||||
"""
|
||||
from dvc.objects.transfer import transfer
|
||||
|
||||
if not odb:
|
||||
odb = self.get_remote_odb(remote, "push")
|
||||
return transfer(
|
||||
odb = odb or self.get_remote_odb(remote, "push")
|
||||
return self.transfer(
|
||||
self.repo.odb.local,
|
||||
odb,
|
||||
objs,
|
||||
jobs=jobs,
|
||||
dest_index=get_index(odb),
|
||||
cache_odb=self.repo.odb.local,
|
||||
validate_status=self._log_missing,
|
||||
)
|
||||
|
||||
def pull(
|
||||
@@ -96,7 +147,7 @@ class DataCloud:
|
||||
objs: Iterable["HashInfo"],
|
||||
jobs: Optional[int] = None,
|
||||
remote: Optional[str] = None,
|
||||
odb: Optional["ObjectDB"] = None,
|
||||
odb: Optional["HashFileDB"] = None,
|
||||
):
|
||||
"""Pull data items in a cloud-agnostic way.
|
||||
|
||||
@@ -107,11 +158,8 @@ class DataCloud:
|
||||
By default remote from core.remote config option is used.
|
||||
odb: optional ODB to pull from. Overrides remote.
|
||||
"""
|
||||
from dvc.objects.transfer import transfer
|
||||
|
||||
if not odb:
|
||||
odb = self.get_remote_odb(remote, "pull")
|
||||
return transfer(
|
||||
odb = odb or self.get_remote_odb(remote, "pull")
|
||||
return self.transfer(
|
||||
odb,
|
||||
self.repo.odb.local,
|
||||
objs,
|
||||
@@ -119,6 +167,7 @@ class DataCloud:
|
||||
src_index=get_index(odb),
|
||||
cache_odb=self.repo.odb.local,
|
||||
verify=odb.verify,
|
||||
validate_status=self._log_missing,
|
||||
)
|
||||
|
||||
def status(
|
||||
@@ -126,7 +175,7 @@ class DataCloud:
|
||||
objs: Iterable["HashInfo"],
|
||||
jobs: Optional[int] = None,
|
||||
remote: Optional[str] = None,
|
||||
odb: Optional["ObjectDB"] = None,
|
||||
odb: Optional["HashFileDB"] = None,
|
||||
log_missing: bool = True,
|
||||
):
|
||||
"""Check status of data items in a cloud-agnostic way.
|
||||
@@ -141,7 +190,7 @@ class DataCloud:
|
||||
log_missing: log warning messages if file doesn't exist
|
||||
neither in cache, neither in cloud.
|
||||
"""
|
||||
from dvc.objects.status import compare_status
|
||||
from dvc_data.hashfile.status import compare_status
|
||||
|
||||
if not odb:
|
||||
odb = self.get_remote_odb(remote, "status")
|
||||
@@ -157,5 +206,5 @@ class DataCloud:
|
||||
|
||||
def get_url_for(self, remote, checksum):
|
||||
odb = self.get_remote_odb(remote)
|
||||
path = odb.hash_to_path(checksum)
|
||||
path = odb.oid_to_path(checksum)
|
||||
return odb.fs.unstrip_protocol(path)
|
||||
|
||||
@@ -47,16 +47,29 @@ def loads_from(stage, s_list, erepo=None):
|
||||
def _merge_params(s_list):
|
||||
d = defaultdict(list)
|
||||
default_file = ParamsDependency.DEFAULT_PARAMS_FILE
|
||||
|
||||
# figure out completely tracked params file, and ignore specific keys
|
||||
wholly_tracked = set()
|
||||
for key in s_list:
|
||||
if not isinstance(key, dict):
|
||||
continue
|
||||
wholly_tracked.update(k for k, params in key.items() if not params)
|
||||
|
||||
for key in s_list:
|
||||
if isinstance(key, str):
|
||||
d[default_file].append(key)
|
||||
if default_file not in wholly_tracked:
|
||||
d[default_file].append(key)
|
||||
continue
|
||||
|
||||
if not isinstance(key, dict):
|
||||
msg = "Only list of str/dict is supported. Got: "
|
||||
msg += f"'{type(key).__name__}'."
|
||||
raise ValueError(msg)
|
||||
|
||||
for k, params in key.items():
|
||||
if k in wholly_tracked:
|
||||
d[k] = []
|
||||
continue
|
||||
if not isinstance(params, list):
|
||||
msg = "Expected list of params for custom params file "
|
||||
msg += f"'{k}', got '{type(params).__name__}'."
|
||||
|
||||
+79
-62
@@ -1,13 +1,15 @@
|
||||
import logging
|
||||
import os
|
||||
import typing
|
||||
from collections import defaultdict
|
||||
from typing import Dict
|
||||
|
||||
import dpath.util
|
||||
from voluptuous import Any
|
||||
|
||||
from dvc.exceptions import DvcException
|
||||
from dvc.hash_info import HashInfo
|
||||
from dvc.utils.serialize import LOADERS, ParseError
|
||||
from dvc.utils.serialize import ParseError, load_path
|
||||
from dvc_data.hashfile.hash_info import HashInfo
|
||||
|
||||
from .base import Dependency
|
||||
|
||||
@@ -18,6 +20,14 @@ class MissingParamsError(DvcException):
|
||||
pass
|
||||
|
||||
|
||||
class MissingParamsFile(DvcException):
|
||||
pass
|
||||
|
||||
|
||||
class ParamsIsADirectoryError(DvcException):
|
||||
pass
|
||||
|
||||
|
||||
class BadParamFileError(DvcException):
|
||||
pass
|
||||
|
||||
@@ -27,51 +37,84 @@ class ParamsDependency(Dependency):
|
||||
PARAM_SCHEMA = {PARAM_PARAMS: Any(dict, list, None)}
|
||||
DEFAULT_PARAMS_FILE = "params.yaml"
|
||||
|
||||
def __init__(self, stage, path, params):
|
||||
info = {}
|
||||
self.params = []
|
||||
if params:
|
||||
if isinstance(params, list):
|
||||
self.params = params
|
||||
else:
|
||||
assert isinstance(params, dict)
|
||||
self.params = list(params.keys())
|
||||
info = {self.PARAM_PARAMS: params}
|
||||
|
||||
super().__init__(
|
||||
stage,
|
||||
path
|
||||
or os.path.join(stage.repo.root_dir, self.DEFAULT_PARAMS_FILE),
|
||||
info=info,
|
||||
)
|
||||
def __init__(self, stage, path, params=None, repo=None):
|
||||
self.params = list(params) if params else []
|
||||
hash_info = HashInfo()
|
||||
if isinstance(params, dict):
|
||||
hash_info = HashInfo(self.PARAM_PARAMS, params)
|
||||
repo = repo or stage.repo
|
||||
path = path or os.path.join(repo.root_dir, self.DEFAULT_PARAMS_FILE)
|
||||
super().__init__(stage, path, repo=repo)
|
||||
self.hash_info = hash_info
|
||||
|
||||
def dumpd(self):
|
||||
ret = super().dumpd()
|
||||
if not self.hash_info:
|
||||
ret[self.PARAM_PARAMS] = self.params
|
||||
ret[self.PARAM_PARAMS] = self.params or {}
|
||||
return ret
|
||||
|
||||
def fill_values(self, values=None):
|
||||
"""Load params values dynamically."""
|
||||
if not values:
|
||||
if values is None:
|
||||
return
|
||||
|
||||
info = {}
|
||||
if not self.params:
|
||||
info.update(values)
|
||||
for param in self.params:
|
||||
if param in values:
|
||||
info[param] = values[param]
|
||||
self.hash_info = HashInfo(self.PARAM_PARAMS, info)
|
||||
|
||||
def workspace_status(self):
|
||||
status = super().workspace_status()
|
||||
def read_params(
|
||||
self, flatten: bool = True, **kwargs: typing.Any
|
||||
) -> Dict[str, typing.Any]:
|
||||
try:
|
||||
config = self.read_file()
|
||||
except MissingParamsFile:
|
||||
config = {}
|
||||
|
||||
if status.get(str(self)) == "deleted":
|
||||
return status
|
||||
if not self.params:
|
||||
return config
|
||||
|
||||
ret = {}
|
||||
if flatten:
|
||||
for param in self.params:
|
||||
try:
|
||||
ret[param] = dpath.util.get(config, param, separator=".")
|
||||
except KeyError:
|
||||
continue
|
||||
return ret
|
||||
|
||||
from dpath.util import merge
|
||||
|
||||
for param in self.params:
|
||||
merge(
|
||||
ret,
|
||||
dpath.util.search(config, param, separator="."),
|
||||
separator=".",
|
||||
)
|
||||
return ret
|
||||
|
||||
def workspace_status(self):
|
||||
if not self.exists:
|
||||
return {str(self): "deleted"}
|
||||
if self.hash_info.value is None:
|
||||
return {str(self): "new"}
|
||||
|
||||
from funcy import ldistinct
|
||||
|
||||
status = defaultdict(dict)
|
||||
info = self.hash_info.value if self.hash_info else {}
|
||||
actual = self.read_params()
|
||||
for param in self.params:
|
||||
if param not in actual.keys():
|
||||
|
||||
# NOTE: we want to preserve the order of params as specified in the
|
||||
# status. In case of tracking the whole file, the order is top-level
|
||||
# keys in the file and then the keys in the `info` from `dvc.lock`
|
||||
# (which are alphabetically sorted).
|
||||
params = self.params or ldistinct([*actual.keys(), *info.keys()])
|
||||
for param in params:
|
||||
if param not in actual:
|
||||
st = "deleted"
|
||||
elif param not in info:
|
||||
st = "new"
|
||||
@@ -88,42 +131,23 @@ class ParamsDependency(Dependency):
|
||||
def status(self):
|
||||
return self.workspace_status()
|
||||
|
||||
def _read(self):
|
||||
def validate_filepath(self):
|
||||
if not self.exists:
|
||||
return {}
|
||||
raise MissingParamsFile(f"Parameters file '{self}' does not exist")
|
||||
if self.isdir():
|
||||
raise ParamsIsADirectoryError(
|
||||
f"'{self}' is a directory, expected a parameters file"
|
||||
)
|
||||
|
||||
suffix = self.repo.fs.path.suffix(self.fs_path).lower()
|
||||
loader = LOADERS[suffix]
|
||||
def read_file(self):
|
||||
self.validate_filepath()
|
||||
try:
|
||||
return loader(self.fs_path, fs=self.repo.fs)
|
||||
return load_path(self.fs_path, self.repo.fs)
|
||||
except ParseError as exc:
|
||||
raise BadParamFileError(
|
||||
f"Unable to read parameters from '{self}'"
|
||||
) from exc
|
||||
|
||||
def read_params_d(self, **kwargs):
|
||||
config = self._read()
|
||||
|
||||
ret = {}
|
||||
for param in self.params:
|
||||
dpath.util.merge(
|
||||
ret,
|
||||
dpath.util.search(config, param, separator="."),
|
||||
separator=".",
|
||||
)
|
||||
return ret
|
||||
|
||||
def read_params(self):
|
||||
config = self._read()
|
||||
|
||||
ret = {}
|
||||
for param in self.params:
|
||||
try:
|
||||
ret[param] = dpath.util.get(config, param, separator=".")
|
||||
except KeyError:
|
||||
pass
|
||||
return ret
|
||||
|
||||
def get_hash(self):
|
||||
info = self.read_params()
|
||||
|
||||
@@ -144,12 +168,5 @@ class ParamsDependency(Dependency):
|
||||
if not self.isfile and not self.isdir:
|
||||
raise self.IsNotFileOrDirError(self)
|
||||
|
||||
if self.is_empty:
|
||||
logger.warning(f"'{self}' is empty.")
|
||||
|
||||
self.ignore()
|
||||
|
||||
if self.metric or self.plot:
|
||||
self.verify_metric()
|
||||
|
||||
self.hash_info = self.get_hash()
|
||||
|
||||
+37
-36
@@ -5,12 +5,14 @@ from typing import TYPE_CHECKING, Dict, Optional, Set, Tuple
|
||||
|
||||
from voluptuous import Required
|
||||
|
||||
from dvc.prompt import confirm
|
||||
|
||||
from .base import Dependency
|
||||
|
||||
if TYPE_CHECKING:
|
||||
from dvc.hash_info import HashInfo
|
||||
from dvc.objects.db.base import ObjectDB
|
||||
from dvc.objects.file import HashFile
|
||||
from dvc_data.hashfile.file import HashFile
|
||||
from dvc_data.hashfile.hash_info import HashInfo
|
||||
from dvc_objects.db import ObjectDB
|
||||
|
||||
|
||||
class RepoDependency(Dependency):
|
||||
@@ -29,7 +31,7 @@ class RepoDependency(Dependency):
|
||||
|
||||
def __init__(self, def_repo, stage, *args, **kwargs):
|
||||
self.def_repo = def_repo
|
||||
self._staged_objs: Dict[str, "HashFile"] = {}
|
||||
self._objs: Dict[str, "HashFile"] = {}
|
||||
super().__init__(stage, *args, **kwargs)
|
||||
|
||||
def _parse_path(self, fs, fs_path):
|
||||
@@ -61,7 +63,7 @@ class RepoDependency(Dependency):
|
||||
return {self.PARAM_PATH: self.def_path, self.PARAM_REPO: self.def_repo}
|
||||
|
||||
def download(self, to, jobs=None):
|
||||
from dvc.objects.checkout import checkout
|
||||
from dvc_data.hashfile.checkout import checkout
|
||||
|
||||
for odb, objs in self.get_used_objs().items():
|
||||
self.repo.cloud.pull(objs, jobs=jobs, odb=odb)
|
||||
@@ -72,8 +74,9 @@ class RepoDependency(Dependency):
|
||||
to.fs,
|
||||
obj,
|
||||
self.repo.odb.local,
|
||||
dvcignore=None,
|
||||
ignore=None,
|
||||
state=self.repo.state,
|
||||
prompt=confirm,
|
||||
)
|
||||
|
||||
def update(self, rev=None):
|
||||
@@ -99,24 +102,22 @@ class RepoDependency(Dependency):
|
||||
) -> Tuple[Dict[Optional["ObjectDB"], Set["HashInfo"]], "HashFile"]:
|
||||
from dvc.config import NoRemoteError
|
||||
from dvc.exceptions import NoOutputOrStageError, PathMissingError
|
||||
from dvc.objects.stage import stage
|
||||
from dvc.objects.tree import Tree
|
||||
from dvc.utils import as_posix
|
||||
from dvc_data.hashfile.build import build
|
||||
from dvc_data.hashfile.tree import Tree, TreeError
|
||||
|
||||
local_odb = self.repo.odb.local
|
||||
locked = kwargs.pop("locked", True)
|
||||
with self._make_repo(
|
||||
locked=locked, cache_dir=local_odb.cache_dir
|
||||
) as repo:
|
||||
with self._make_repo(locked=locked, cache_dir=local_odb.path) as repo:
|
||||
used_obj_ids = defaultdict(set)
|
||||
rev = repo.get_rev()
|
||||
if locked and self.def_repo.get(self.PARAM_REV_LOCK) is None:
|
||||
self.def_repo[self.PARAM_REV_LOCK] = rev
|
||||
|
||||
path = os.path.abspath(os.path.join(repo.root_dir, self.def_path))
|
||||
if not obj_only:
|
||||
try:
|
||||
for odb, obj_ids in repo.used_objs(
|
||||
[path],
|
||||
[os.path.join(repo.root_dir, self.def_path)],
|
||||
force=True,
|
||||
jobs=kwargs.get("jobs"),
|
||||
recursive=True,
|
||||
@@ -130,65 +131,65 @@ class RepoDependency(Dependency):
|
||||
pass
|
||||
|
||||
try:
|
||||
staging, _, staged_obj = stage(
|
||||
object_store, _, obj = build(
|
||||
local_odb,
|
||||
path,
|
||||
repo.repo_fs,
|
||||
as_posix(self.def_path),
|
||||
repo.dvcfs,
|
||||
local_odb.fs.PARAM_CHECKSUM,
|
||||
)
|
||||
except FileNotFoundError as exc:
|
||||
except (FileNotFoundError, TreeError) as exc:
|
||||
raise PathMissingError(
|
||||
self.def_path, self.def_repo[self.PARAM_URL]
|
||||
) from exc
|
||||
staging = copy(staging)
|
||||
staging.read_only = True
|
||||
object_store = copy(object_store)
|
||||
object_store.read_only = True
|
||||
|
||||
self._staged_objs[rev] = staged_obj
|
||||
used_obj_ids[staging].add(staged_obj.hash_info)
|
||||
if isinstance(staged_obj, Tree):
|
||||
used_obj_ids[staging].update(oid for _, _, oid in staged_obj)
|
||||
return used_obj_ids, staged_obj
|
||||
self._objs[rev] = obj
|
||||
used_obj_ids[object_store].add(obj.hash_info)
|
||||
if isinstance(obj, Tree):
|
||||
used_obj_ids[object_store].update(oid for _, _, oid in obj)
|
||||
return used_obj_ids, obj
|
||||
|
||||
def _check_circular_import(self, odb, obj_ids):
|
||||
from dvc.exceptions import CircularImportError
|
||||
from dvc.fs.repo import RepoFileSystem
|
||||
from dvc.objects.db.reference import ReferenceObjectDB
|
||||
from dvc.objects.tree import Tree
|
||||
from dvc.fs.dvc import DvcFileSystem
|
||||
from dvc_data.hashfile.db.reference import ReferenceHashFileDB
|
||||
from dvc_data.hashfile.tree import Tree
|
||||
|
||||
if not isinstance(odb, ReferenceObjectDB):
|
||||
if not isinstance(odb, ReferenceHashFileDB):
|
||||
return
|
||||
|
||||
def iter_objs():
|
||||
for hash_info in obj_ids:
|
||||
if hash_info.isdir:
|
||||
tree = Tree.load(odb, hash_info)
|
||||
yield from (odb.get(oid) for _, _, oid in tree)
|
||||
yield from (odb.get(hi.value) for _, _, hi in tree)
|
||||
else:
|
||||
yield odb.get(hash_info)
|
||||
yield odb.get(hash_info.value)
|
||||
|
||||
checked_urls = set()
|
||||
for obj in iter_objs():
|
||||
if not isinstance(obj.fs, RepoFileSystem):
|
||||
if not isinstance(obj.fs, DvcFileSystem):
|
||||
continue
|
||||
if (
|
||||
obj.fs.repo_url in checked_urls
|
||||
or obj.fs.root_dir in checked_urls
|
||||
or obj.fs.repo.root_dir in checked_urls
|
||||
):
|
||||
continue
|
||||
self_url = self.repo.url or self.repo.root_dir
|
||||
if (
|
||||
obj.fs.repo_url is not None
|
||||
and obj.fs.repo_url == self_url
|
||||
or obj.fs.root_dir == self.repo.root_dir
|
||||
or obj.fs.repo.root_dir == self.repo.root_dir
|
||||
):
|
||||
raise CircularImportError(self, obj.fs.repo_url, self_url)
|
||||
checked_urls.update([obj.fs.repo_url, obj.fs.root_dir])
|
||||
checked_urls.update([obj.fs.repo_url, obj.fs.repo.root_dir])
|
||||
|
||||
def get_obj(self, filter_info=None, **kwargs):
|
||||
locked = kwargs.get("locked", True)
|
||||
rev = self._get_rev(locked=locked)
|
||||
if rev in self._staged_objs:
|
||||
return self._staged_objs[rev]
|
||||
if rev in self._objs:
|
||||
return self._objs[rev]
|
||||
_, obj = self._get_used_and_obj(
|
||||
obj_only=True, filter_info=filter_info, **kwargs
|
||||
)
|
||||
|
||||
+7
-4
@@ -59,7 +59,7 @@ def is_lock_file(path):
|
||||
|
||||
|
||||
def is_git_ignored(repo, path):
|
||||
from dvc.fs.local import LocalFileSystem
|
||||
from dvc.fs import LocalFileSystem
|
||||
from dvc.scm import NoSCMError
|
||||
|
||||
try:
|
||||
@@ -197,7 +197,7 @@ class SingleStageFile(FileMixin):
|
||||
assert not isinstance(stage, PipelineStage)
|
||||
if self.verify:
|
||||
check_dvcfile_path(self.repo, self.path)
|
||||
logger.debug(f"Saving information to '{relpath(self.path)}'.")
|
||||
logger.debug("Saving information to '%s'.", relpath(self.path))
|
||||
dump_yaml(self.path, serialize.to_single_stage_file(stage))
|
||||
self.repo.scm_context.track_file(self.relpath)
|
||||
|
||||
@@ -243,9 +243,11 @@ class PipelineFile(FileMixin):
|
||||
self._lockfile.dump(stage)
|
||||
|
||||
@staticmethod
|
||||
def _check_if_parametrized(stage):
|
||||
def _check_if_parametrized(stage, action: str = "dump") -> None:
|
||||
if stage.raw_data.parametrized:
|
||||
raise ParametrizedDumpError(f"cannot dump a parametrized {stage}")
|
||||
raise ParametrizedDumpError(
|
||||
f"cannot {action} a parametrized {stage}"
|
||||
)
|
||||
|
||||
def _dump_pipeline_file(self, stage):
|
||||
self._check_if_parametrized(stage)
|
||||
@@ -291,6 +293,7 @@ class PipelineFile(FileMixin):
|
||||
self._lockfile.remove()
|
||||
|
||||
def remove_stage(self, stage):
|
||||
self._check_if_parametrized(stage, "remove")
|
||||
self._lockfile.remove_stage(stage)
|
||||
if not self.exists():
|
||||
return
|
||||
|
||||
Some files were not shown because too many files have changed in this diff Show More
Reference in New Issue
Block a user