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944 Commits
Author SHA1 Message Date
skshetry e51345e276 get/import: lazy import dvc.scm; reduces dvc --help by ~20% (#8996) 2023-02-09 15:04:55 +05:45
skshetry 00e61e18ae logging: do not disable other loggers (#8995)
Closes https://github.com/iterative/dvc/issues/8631
2023-02-09 15:04:29 +05:45
skshetry 5490fc00d1 logger: check isatty stream to print colored logs or not instead of depending on colorama (#8993
logger: check isatty stream to print colored logs or not
2023-02-09 13:50:38 +05:45
skshetry f1043676da [WIP] logging: change from dictConfig to equivalent code for creating logge… (#8985
logging: change from dictConfig to equivalent code for creating loggers/handlers/formatters

dictConfig clears all handlers, and potentially disables existing loggers (we disabled this functionality
though). There's much more code than necessary in dictConfig than what we need.

I have tried to keep the setup equivalent to what we had in the config, so I have not tried to cleanup
the code.
2023-02-09 09:34:14 +05:45
Ruslan Kuprieiev f7ebcbb974 deps: bump dvc-data to 0.39.3 2023-02-09 05:44:50 +02:00
dependabot[bot] c637b963e0 build(deps-dev): bump dvc-azure from 2.21.0 to 2.21.1 (#8991)
Bumps [dvc-azure](https://github.com/iterative/dvc-azure) from 2.21.0 to 2.21.1.
- [Release notes](https://github.com/iterative/dvc-azure/releases)
- [Commits](https://github.com/iterative/dvc-azure/compare/2.21.0...2.21.1)

---
updated-dependencies:
- dependency-name: dvc-azure
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

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2023-02-09 08:31:13 +05:45
Ruslan Kuprieiev 9156bb80db output: rename odb -> cache 2023-02-09 00:44:18 +02:00
Ruslan Kuprieiev 58295ca0ab repo: rename odb -> cache
We used to have it named `cache` before, but these days it is clear that
you can have three odbs: just odb (e.g. in-memory), cache (typically local)
or remote (typically cloud). Fixing naming here before proceeding with
introducing `out.odb` and `out.cache`.

In preparation for migration to https://github.com/iterative/dvc-data/pull/304
2023-02-08 23:05:45 +02:00
skshetry 4176007493 push: check if versioning is supported or not during checkout on cloud versioning (#8949)Fixes https://github.com/iterative/dvc/issues/8824
* push: check if versioning is supported or not during checkout on cloud versioning

* bump dvc-data to 0.38.4
2023-02-08 17:05:27 +05:45
dependabot[bot]andGao 9d7883f529 build(deps-dev): bump pytest-xdist from 3.1.0 to 3.2.0 (#8981)
Bumps [pytest-xdist](https://github.com/pytest-dev/pytest-xdist) from 3.1.0 to 3.2.0.
- [Release notes](https://github.com/pytest-dev/pytest-xdist/releases)
- [Changelog](https://github.com/pytest-dev/pytest-xdist/blob/master/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest-xdist/compare/v3.1.0...v3.2.0)

---
updated-dependencies:
- dependency-name: pytest-xdist
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

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2023-02-08 07:31:21 +00:00
Peter Rowlands 93c556acdd index: fix index entries for partial import stages 2023-02-08 15:34:15 +09:00
Peter Rowlands 676b1e47e9 import-url: update stage md5 after unpartialing imports 2023-02-08 15:34:15 +09:00
Peter Rowlands 0b141ac08a testing: test cloud versioned import-url --no-download 2023-02-08 15:34:15 +09:00
dependabot[bot] b4db1e06a1 build(deps-dev): bump dvc-render from 0.1.0 to 0.1.1 (#8982)
Bumps [dvc-render](https://github.com/iterative/dvc-render) from 0.1.0 to 0.1.1.
- [Release notes](https://github.com/iterative/dvc-render/releases)
- [Commits](https://github.com/iterative/dvc-render/compare/0.1.0...0.1.1)

---
updated-dependencies:
- dependency-name: dvc-render
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

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2023-02-08 09:11:42 +05:45
dependabot[bot] 0d0fff6ddc build(deps-dev): bump dvc-data from 0.38.1 to 0.38.3 (#8983)
Bumps [dvc-data](https://github.com/iterative/dvc-data) from 0.38.1 to 0.38.3.
- [Release notes](https://github.com/iterative/dvc-data/releases)
- [Commits](https://github.com/iterative/dvc-data/compare/0.38.1...0.38.3)

---
updated-dependencies:
- dependency-name: dvc-data
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

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2023-02-08 09:11:28 +05:45
Hagai Kariti 6c8c26f741 Support setting a exp name prefix in hydra sweeps 2023-02-07 18:49:23 +01:00
Peter Rowlands f68a12558a testing: mark 00 prefix tests xfail on fs without find() 2023-02-07 15:17:29 +09:00
Ruslan Kuprieiev a8a5b29fb7 deps: bump dvc-data to 0.38.1 (#8976) 2023-02-07 06:58:15 +02:00
skshetry 037e2e54f0 serialization: reorder files section metadata (#8950
serialization: reorder files section
2023-02-07 10:05:36 +05:45
skshetry ae80889477 logging: defer calling colorama.init() in jupyter, otherwise initialize immediately (#8969)Closes https://github.com/iterative/dvc/issues/8957
logging: init colorama before logging if outside jupyter env

Otherwise, tty detection does not work as `colorama.init()` mutates
sys.stdout/sys.stderr, and after `dictConfig()`, the handlers will hold
on to the stream.
2023-02-07 10:05:05 +05:45
Gao e1acab5113 Use pygit2 backend for fetch_refspecs (#8907)
fix: #8762
1. partly solve #8787 and #8477
2. Improve the performance
3. Bump `scmrepo` into 0.1.9
2023-02-06 16:07:00 +02:00
d84196db62 studio: Move post_live_metrics from queue to executor (#8955)
* studio: Move `post_live_metrics` from `queue/workspace` to `executor/base`.

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* Update dvc/repo/experiments/utils.py

Co-authored-by: skshetry <[email protected]>

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2023-02-06 13:31:10 +00:00
Peter Rowlands 80c2815e67 deps: bump dvc-data to 0.37.8 2023-02-06 21:18:44 +09:00
Peter Rowlands e42a01a3dd testing: re-add 00 prefix remote traverse tests 2023-02-06 21:18:44 +09:00
Ruslan Kuprieiev 8e1b75feb5 index: build_data_index: handle empty dirs (#8959)
Fixes https://github.com/iterative/dvc/issues/8958
2023-02-06 01:44:15 +02:00
Saugat Pachhai (सौगात) 4ec6d64629 add .git-blame-ignore-revs 2023-02-04 10:02:31 +05:45
skshetry a86470ccbc update black and change line-length to 88 (#8953) 2023-02-04 05:28:07 +02:00
dependabot[bot] 5d2701341b build(deps-dev): bump pylint from 2.16.0 to 2.16.1 (#8944)
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-02-03 14:06:36 +05:45
Peter Rowlands 97589a1358 testing: add tests for pull after import-url --version-aware 2023-02-03 15:50:57 +09:00
Peter Rowlands 9e72ce53cd deps: bump dvc-data to 0.37.5 2023-02-03 15:50:57 +09:00
Peter Rowlands e34a6d3b30 update: fix meta & version ID merge on worktree update 2023-02-03 13:23:04 +09:00
Peter Rowlands 25dcc33580 output: build from files in get_obj() regardless is hash_info set 2023-02-03 13:23:04 +09:00
frederik-sandfort 18fa1a0272 Custom header for dvc webdav (#8933)Fix https://github.com/iterative/dvc/issues/8931
* include custom auth header for webdav

* Revert "include custom auth header for webdav"

This reverts commit d2f2b2889b6bcf0429e4a28076f709a04642ae3a.

* include custom auth header for dvc webdav, ran unit tests

* update dvc-webdav version
2023-02-02 16:36:11 +05:45
dependabot[bot] 49a27f4140 build(deps-dev): bump dvc-render from 0.0.17 to 0.1.0 (#8935)
Bumps [dvc-render](https://github.com/iterative/dvc-render) from 0.0.17 to 0.1.0.
- [Release notes](https://github.com/iterative/dvc-render/releases)
- [Commits](https://github.com/iterative/dvc-render/compare/0.0.17...0.1.0)

---
updated-dependencies:
- dependency-name: dvc-render
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

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2023-02-02 14:13:27 +05:45
dependabot[bot] 9b2aa79c18 build(deps-dev): bump pylint from 2.15.10 to 2.16.0 (#8936)
Bumps [pylint](https://github.com/PyCQA/pylint) from 2.15.10 to 2.16.0.
- [Release notes](https://github.com/PyCQA/pylint/releases)
- [Commits](https://github.com/PyCQA/pylint/compare/v2.15.10...v2.16.0)

---
updated-dependencies:
- dependency-name: pylint
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

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2023-02-02 14:12:53 +05:45
Ruslan Kuprieiev 24023c6977 index: introduce data_keys (#8938)
`data_keys` are similar to `outs`, but they provide more granularity, so we
can use them in `build_data_index` to rebuild index views with filtered
outputs. E.g. when running `dvc diff dir/file`, workspace index should only
have `dir/file` in it.

This also could be used for standalone (non-output) data in the future.

Pre-requisite for #8930
2023-02-02 05:50:16 +02:00
Ruslan Kuprieiev 5310bcdcec deps: bump dvc-data to 0.37.3 (#8923) 2023-02-02 04:18:18 +02:00
dependabot[bot] ae92154cec build(deps-dev): bump beautifulsoup4 from 4.11.1 to 4.11.2 (#8928)
Bumps [beautifulsoup4](https://www.crummy.com/software/BeautifulSoup/bs4/) from 4.11.1 to 4.11.2.

---
updated-dependencies:
- dependency-name: beautifulsoup4
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

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2023-02-01 09:10:50 +05:45
Ruslan Kuprieiev f661cee8f6 stage: use repo.fs directly without copying (#8929)
Otherwise when using brancher we end up in a strange situation where even
though we are collecting targets from `gitfs`, we are still using `localfs`
as `self.fs`, which make operations like `self.fs.abspath` in
`collect_granular` return invalid paths.
2023-02-01 05:21:53 +02:00
Ruslan Kuprieiev e07c85a993 index: collect_targets: introduce onerror (#8925) 2023-02-01 03:49:27 +02:00
Ruslan Kuprieiev 58d9e379fe tests: gc: use timedelta again (#8926)
Leftover from #8912
2023-02-01 03:14:22 +02:00
skshetry 524162dc3f version/info: match dashes' length below DVC version (#8921) 2023-01-31 18:32:04 +05:45
skshetry aa15b21dce logging: log pkg version/type, platform info and cli arguments (#8918)
logging: log pkg version and type, platform info and cli arguments
2023-01-31 15:46:14 +05:45
Peter Rowlands 0404967591 deps: bump dvc-gs to 2.21.1 2023-01-31 17:26:44 +09:00
Peter Rowlands 465d886c29 testing: add tests for version-aware import-url 2023-01-31 15:55:44 +09:00
Peter Rowlands 459adfb40f import-url: disable push on version aware imports before saving 2023-01-31 15:55:44 +09:00
Peter Rowlands fe9f8654a3 testing: add test for worktree update 2023-01-31 15:55:44 +09:00
skshetry 8208846003 bump ruff to 0.0.238 (#8915) 2023-01-31 11:24:03 +05:45
Peter Rowlands 73aea2d972 ci: run dvc-s3 tests on DVC pull requests 2023-01-31 14:13:55 +09:00
Ruslan Kuprieiev 10184e9370 tests: gc: use timedelta (#8912)
Bug from https://github.com/iterative/dvc/pull/8880
2023-01-31 05:18:09 +02:00
Ruslan Kuprieiev 2690f05cee pre-commit: bump isort to 5.12.0
https://github.com/PyCQA/isort/issues/2077
2023-01-31 04:02:24 +02:00
Ruslan Kuprieiev 34c2c95115 index: expose rev property (#8909)
index: add rev property

This is very useful to identify indexes that are built from git revisions
and so are describing an immutable state and can be used for caching.

We were already using this for `__repr__`.
2023-01-30 20:18:54 +02:00
skshetry 5c6c1dc719 mypy: unignore module override (#8902) 2023-01-28 15:08:52 +05:45
98bcfad8e7 build(deps-dev): bump scmrepo from 0.1.6 to 0.1.7 (#8821)
* build(deps-dev): bump scmrepo from 0.1.6 to 0.1.7

Bumps [scmrepo](https://github.com/iterative/scmrepo) from 0.1.6 to 0.1.7.
- [Release notes](https://github.com/iterative/scmrepo/releases)
- [Commits](https://github.com/iterative/scmrepo/compare/0.1.6...0.1.7)

---
updated-dependencies:
- dependency-name: scmrepo
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>

* mypy: remove scmrepo from ignored modules

* Fix mypy issues

---------

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Co-authored-by: Saugat Pachhai (सौगात) <[email protected]>
2023-01-28 14:26:00 +05:45
skshetry 7ab4c59d70 test: run pytest-style checks (#8901) 2023-01-28 14:10:53 +05:45
skshetry a137b2a6bc update ruff and enable flake8-logging-format and flake8-type-checking (#8894)
* update ruff and enable flake8-logging-format and flake8-type-checking check

* Update dvc/external_repo.py

* Update dvc/fs/dvc.py

* Update dvc/repo/experiments/__init__.py

* Update dvc/repo/experiments/queue/base.py

* Update pyproject.toml
2023-01-27 19:14:19 +05:45
Daniele Trifirò 6f0e8a8db5 tests: fix test_iter_revs mock 2023-01-27 12:52:46 +01:00
Daniele Trifirò d294945499 gc: fix usage with --date 2023-01-27 12:52:46 +01:00
Dave Berenbaum db70d1cc5c analytics: differentiate ci users (#8838) 2023-01-26 21:50:14 +05:45
Andrii Korzhuk ed6e11e856 Fixed typo in _format_field function 2023-01-26 13:50:40 +01:00
skshetry c1cd13c34f serialize: fix loading of cloud metadata from .dvc/dvc.lock files (#8889) 2023-01-26 16:18:03 +05:45
David de la Iglesia Castro 12dd746165 output: Pass version_aware=True to fs if files is present.
This will be ignored by filesystems that don't support `version_aware`.

Closes #8853
2023-01-26 10:48:59 +01:00
5165fb67a1 [pre-commit.ci] pre-commit autoupdate (#8869)
* [pre-commit.ci] pre-commit autoupdate

updates:
- [github.com/charliermarsh/ruff-pre-commit: v0.0.223 → v0.0.230](https://github.com/charliermarsh/ruff-pre-commit/compare/v0.0.223...v0.0.230)

* Update .pre-commit-config.yaml

* fix lint issues

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Co-authored-by: skshetry <[email protected]>
Co-authored-by: Saugat Pachhai (सौगात) <[email protected]>
2023-01-26 14:24:09 +05:45
Peter Rowlands b2c1c4dccd data_cloud: move version_aware config check to get_remote 2023-01-26 17:21:47 +09:00
Peter Rowlands b060cadbf1 deps: bump dvc-data to 0.36.2 2023-01-26 17:21:47 +09:00
Peter Rowlands 7c55a9c7cd testing: add initial versioned remote tests 2023-01-26 17:03:50 +09:00
Peter Rowlands 037b5b2e0a testing: add cloud versioning remote fixtures 2023-01-26 17:03:50 +09:00
dependabot[bot] 99acb8e335 build(deps-dev): bump dvc-data from 0.36.0 to 0.36.1 (#8887)
Bumps [dvc-data](https://github.com/iterative/dvc-data) from 0.36.0 to 0.36.1.
- [Release notes](https://github.com/iterative/dvc-data/releases)
- [Commits](https://github.com/iterative/dvc-data/compare/0.36.0...0.36.1)

---
updated-dependencies:
- dependency-name: dvc-data
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

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2023-01-26 08:32:02 +05:45
Ruslan Kuprieiev b46cfbda5d deps: bump dvc-data to 0.36.0 (#8885) 2023-01-26 00:22:12 +02:00
Dave Berenbaum a8d193bf2a queue: update kill ui messages (#8798)
* queue: update kill ui messages

* queue kill: update ui, kill all valid tasks

* queue kill: update wording of ui
2023-01-25 20:08:27 +05:45
dependabot[bot] 0b1cf6c771 build(deps-dev): bump dvc-gs from 2.20.0 to 2.21.0 (#8841)
Bumps [dvc-gs](https://github.com/iterative/dvc-gs) from 2.20.0 to 2.21.0.
- [Release notes](https://github.com/iterative/dvc-gs/releases)
- [Commits](https://github.com/iterative/dvc-gs/compare/2.20.0...2.21.0)

---
updated-dependencies:
- dependency-name: dvc-gs
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>

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2023-01-25 19:29:21 +05:45
skshetry b3aa698cd4 dumpd: serialize files at the end in .dvc files (#8879) 2023-01-25 18:52:15 +05:45
skshetry bb9a3a0403 import/import-url: try not to delete dvcfile before import/import-url completes (#8876)
* import/import-url: try not to delete dvcfile before import/import-url completes

* use repo.stage.create instead of internal create_stage utility
2023-01-25 18:16:45 +05:45
skshetry 3427e115eb data status: check if change.old.hash_info is None or not (#8878)
data:status: check if change.old.hash_info is None or not
2023-01-25 14:24:38 +02:00
skshetry 3d5f4dc66c add support for output-specific remotes (#8862)
Also splits metadata in `files` to cloud vs local. But this happens
during dump/load, so actual behaviour is changed. During runtime,
the metadata is merged and loaded. During dump, the metadata
are split if there is a `remote` set.
2023-01-25 18:06:12 +05:45
David de la Iglesia Castro 80633f4fad stage.save: Remove merge_versioned option.
If we want `add`, `commit` and `move` to work for cloud versioning, option must be always True so it is the same as not having it.

Closes #8828
(We were not passing `merge_versioned=True` in `dvc commit`)
2023-01-25 10:35:37 +01:00
Ruslan Kuprieiev 8bda3650c5 deps: bump dvc-data to 0.35.3 2023-01-24 23:06:34 +02:00
David de la Iglesia Castro ea2e5dc3e5 output: Don't serialize hash_info or meta in cloud versioning.
Closes #8357
2023-01-24 18:40:39 +01:00
dependabot[bot] 61afdca3a6 build(deps-dev): bump dvc-data from 0.35.1 to 0.35.2 (#8871)
Bumps [dvc-data](https://github.com/iterative/dvc-data) from 0.35.1 to 0.35.2.
- [Release notes](https://github.com/iterative/dvc-data/releases)
- [Commits](https://github.com/iterative/dvc-data/compare/0.35.1...0.35.2)

---
updated-dependencies:
- dependency-name: dvc-data
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>

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2023-01-24 20:47:16 +05:45
Ruslan Kuprieiev 6a6bc7035a data: status: use data index (#8846)
Pre-requisite for #8761
2023-01-23 21:29:32 +02:00
Ruslan Kuprieiev ccc97622fa deps: bump dvc-ssh to 2.21.0 (#8865)
* deps: bump dvc-ssh to 2.21.0

* Update pyproject.toml
2023-01-23 01:36:52 +02:00
Ruslan Kuprieiev 916b5d169f deps: bump dvc-azure to 2.21.0 2023-01-23 00:46:58 +02:00
Peter Rowlands 38e9b2ba95 deps: bump dvc-data to 0.35.1 2023-01-21 03:44:02 +09:00
Dave Berenbaumandskshetry 18f039d7c7 add viztracer async option (#8856)
* add viztracer async option

* Update dvc/_debug.py

Co-authored-by: skshetry <[email protected]>
2023-01-20 22:29:11 +05:45
skshetry f1c9e9365b remove setup.py file (#8851) 2023-01-20 20:26:13 +05:45
Ruslan Kuprieiev b50d1ee674 deps: bump dvc-data to 0.35.0 2023-01-20 04:16:12 +02:00
Peter Rowlands 1c33024b2c deps: bump dvc-data to 0.34.0 2023-01-19 19:09:45 +09:00
David de la Iglesia CastroandPeter Rowlands dd2d2dce19 param: Fix status check for Tuples.
Closes #8803

Update dvc/dependency/param.py

Co-authored-by: Peter Rowlands (변기호) <[email protected]>
2023-01-19 08:19:16 +01:00
David de la Iglesia Castro 5f558d003a deps: bump dvc-data to 0.33.0
- Update `test_gc`
2023-01-18 15:17:07 +02:00
David de la Iglesia Castro 3676f35b7c output.remove: Pass explicit recursive flag.
Per changes in https://github.com/iterative/dvc-objects/pull/176
2023-01-18 15:17:07 +02:00
David de la Iglesia Castro 9af6fcad4a exp run: Fix --dry option.
Closes #8831
2023-01-17 13:32:20 +01:00
skshetry 6d80b72434 lint: run lint checks on all platforms (#8832) 2023-01-17 10:51:57 +05:45
pre-commit-ci[bot] 46d9290fc2 [pre-commit.ci] pre-commit autoupdate (#8830)
updates:
- [github.com/charliermarsh/ruff-pre-commit: v0.0.222 → v0.0.223](https://github.com/charliermarsh/ruff-pre-commit/compare/v0.0.222...v0.0.223)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
2023-01-17 08:55:33 +05:45
skshetry c47c2123fb cleanup linters: get rid of pylint-pytest, run pylint only on dvc/ directory, etc (#8822)
* cleanup linters: get rid of pylint-pytest, run pylint only on dvc/ directory, etc.

* remove pylint direcitves

* Apply suggestions from code review

* Update pyproject.toml
2023-01-17 08:35:19 +05:45
Dave Berenbaum d25d26ff74 exp: drop some words from exp names (#8811) 2023-01-16 17:11:04 +01:00
Peter Rowlands c2e4f51479 serialize: fix mypy error 2023-01-16 15:58:21 +09:00
Peter Rowlands 977a1f9f43 tests: update for dvc-objects batched transfer 2023-01-16 15:58:21 +09:00
Peter Rowlands 608269dc88 status: remove deprecated/unused dvc-data.hashfile.status flag 2023-01-16 15:58:21 +09:00
Peter Rowlands e48d0d1d9c tests: remove duplicated dvc-objects/dvc-data tests 2023-01-16 15:58:21 +09:00
Peter Rowlands bf08bd3f12 deps: bump dvc-data to 0.32.0 2023-01-16 15:58:21 +09:00
dependabot[bot] db5dfdd6bc build(deps-dev): bump pytest from 7.2.0 to 7.2.1 (#8819)
Bumps [pytest](https://github.com/pytest-dev/pytest) from 7.2.0 to 7.2.1.
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest/compare/7.2.0...7.2.1)

---
updated-dependencies:
- dependency-name: pytest
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-01-16 08:37:15 +05:45
dependabot[bot] 3b10f40ca3 build(deps-dev): bump dvc-task from 0.1.10 to 0.1.11 (#8820)
Bumps [dvc-task](https://github.com/iterative/dvc-task) from 0.1.10 to 0.1.11.
- [Release notes](https://github.com/iterative/dvc-task/releases)
- [Commits](https://github.com/iterative/dvc-task/compare/0.1.10...0.1.11)

---
updated-dependencies:
- dependency-name: dvc-task
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-01-16 08:36:39 +05:45
Ruslan Kuprieiev 4660443d0e deps: bump dvc-data to 0.31.4 2023-01-16 04:09:00 +02:00
Ruslan Kuprieiev a92ace0054 deps: bump dvc-data to 0.31.3 2023-01-16 01:16:35 +02:00
skshetry 309ae4d995 mypy: enable check-untyped-defs (#8815) 2023-01-15 21:40:40 +05:45
daniele e1254c9ece Add misc type hints (#8430) 2023-01-15 17:58:34 +05:45
skshetry 7a65ac06b2 mypy: don't ignore all imports, also disallow implicit optional (#8814)
* mypy: don't ignore all imports

* mypy: disallow implicit_optional
2023-01-15 16:25:03 +05:45
skshetry b0052aa666 pre-commit update: flake8/ruff/pyupgrade/black/isort (#8813) 2023-01-15 14:56:54 +05:45
skshetry da27174e02 dvcfile: rename PipelineFile to ProjectFile, get rid of Dvcfile class, cleanups, etc. (#8812)
dvcfile: rename PipelineFile to ProjectFile, get rid of Dvcfile class, cleanups etc
2023-01-15 12:45:10 +05:45
Ruslan Kuprieiev aabdddc2b7 index: introduce build_data_index
This is a generally useful function that builds a data index from repo index.

This is currently only used in cloud versioning, but it is going to be used in
`status`, `diff` and other data-centric operations
2023-01-15 01:45:09 +02:00
karajan1001 fc1a192c90 Bump pathspec to 0.10.3
fix: #8217
1. Replace group name to avoid conflict.
2. Disable failed tests.
3. Bump pathspec to 0.10.3
2023-01-13 22:47:36 +08:00
dependabot[bot]andSaugat Pachhai 178244f666 build(deps-dev): bump dvc-task from 0.1.9 to 0.1.10 (#8807)
* build(deps-dev): bump dvc-task from 0.1.9 to 0.1.10

Bumps [dvc-task](https://github.com/iterative/dvc-task) from 0.1.9 to 0.1.10.
- [Release notes](https://github.com/iterative/dvc-task/releases)
- [Commits](https://github.com/iterative/dvc-task/compare/0.1.9...0.1.10)

---
updated-dependencies:
- dependency-name: dvc-task
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>

* remove xfail on json.JSONDecodeError/PermissionError

JSONDecodeError should be fixed by the new release. Next we need to investigate
PermissionError.

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Saugat Pachhai (सौगात) <[email protected]>
2023-01-13 17:25:36 +05:45
skshetry dba7d3c320 mypy: use typesafe cached_property (#8799) 2023-01-13 09:08:59 +05:45
David de la Iglesia Castro 8b075eb754 stage: Skip run-cache if any out has cache: false.
Closes https://github.com/iterative/dvc/issues/4428
2023-01-12 19:10:01 +01:00
David de la Iglesia Castro f507e4d9c0 config: Reraise ConfigError from ConfigObjError.
Closes #8801
2023-01-12 18:11:54 +01:00
skshetry 5169205229 deps: bump minimum version req for grandalf to 0.7. 2023-01-12 18:38:45 +05:45
skshetry 3bcd683677 repo.check_graph: rename method (#8800) 2023-01-12 16:03:51 +05:45
Saugat Pachhai (सौगात) 30ec1cf5e9 index/stage: move repo collection logic to index 2023-01-11 19:38:43 +02:00
skshetry a814f04ee0 tests: xfail test_apply_failed on JSONDecodeError/PermissionError (#8796) 2023-01-11 18:04:23 +05:45
skshetry 90a27179eb ruff: ignore complex functions and remove dvc.utils.fs.makedirs (#8795)
We may want to prevent any new functions from getting complex.
2023-01-11 17:58:51 +05:45
skshetry 175c578579 ruff: ban relative parent/grandparent imports (#8794) 2023-01-11 16:48:46 +05:45
skshetry 5441964fdb add ruff (#8793)
* add ruff linter

* enable few more checks
2023-01-11 15:20:38 +05:45
Ivan Shcheklein d4bfe38a54 perf: remove fs exists check in plots, parallel data collect 2023-01-10 20:27:02 -08:00
dependabot[bot] a060049186 build(deps-dev): unpin grandalf
See https://github.com/bdcht/grandalf/issues/26#issuecomment-1378175273.
2023-01-11 08:44:49 +05:45
Ruslan Kuprieiev c02285ab49 deps: bump dvc-data to 0.29.0 2023-01-11 03:03:38 +02:00
Jorge Orpinel bccbbc1d94 Update dvc/commands/imp_url.py 2023-01-10 19:05:18 +02:00
Jorge Orpinel d736b31d8b import-url: Update options order
Per https://github.com/iterative/dvc.org/pull/3934
2023-01-10 19:05:18 +02:00
Peter Rowlands 68c1cc095c deps: bump dvc-data to 0.28.6 2023-01-11 00:20:22 +09:00
Peter Rowlands c94d28594d worktree push: remove existing version id optimization for file outs 2023-01-10 16:21:31 +09:00
Peter Rowlands d3d429ef7f push/fetch: respect --jobs on worktree push/fetch 2023-01-10 16:21:31 +09:00
dependabot[bot] 6ac88104da build(deps-dev): Bump pylint from 2.15.9 to 2.15.10
Bumps [pylint](https://github.com/PyCQA/pylint) from 2.15.9 to 2.15.10.
- [Release notes](https://github.com/PyCQA/pylint/releases)
- [Commits](https://github.com/PyCQA/pylint/compare/v2.15.9...v2.15.10)

---
updated-dependencies:
- dependency-name: pylint
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
2023-01-10 10:39:48 +05:45
skshetry d87cdba6d8 gha: remove env vars SHELL 2023-01-10 10:19:29 +05:45
Ruslan Kuprieiev b25ef5cdfb metrics/params: show: add hide_workspace flag 2023-01-09 16:57:18 +02:00
dberenbaum 435407185f params/metrics diff: address test failures for missing branch key 2023-01-09 16:57:18 +02:00
dberenbaum 0b192af6f4 params: fix diff bt active branch and workspace 2023-01-09 16:57:18 +02:00
dberenbaum c6b602a167 metrics: fix diff bt active branch and workspace 2023-01-09 16:57:18 +02:00
David de la Iglesia Castro 1d5de9c5ba repro: Disable run-cache if --no-commit.
As described in https://github.com/iterative/dvc/issues/4428#issuecomment-778263005.

Add `run_cache` argument to `Stage.save`. Set it to `False` if `no_commit`.
2023-01-09 12:38:57 +01:00
Ruslan Kuprieiev 0e5674ffea ls: compute relparts once for every dir
Cuts down `dvc ls . data/mnist/dataset --recursive` for me from ~25 to ~12
seconds.

`relparts` is an expensive operation as it calls `relpath` that calls `abspath`,
so we want to avoid calling it as much as possible.
2023-01-08 03:44:50 +02:00
Ruslan Kuprieiev 684fc32e36 dvcfs: ls: don't call info()
Cuts down `dvc ls . data/mnist/dataset --recursive` for me from ~37 to ~25
seconds.

Note that this also changes behaviour for ls with a broken symlink, as we
were not able to see it before because of a failing `info()` call, but now
we can follow a normal UNIX ls behaviour more closely.
2023-01-08 00:37:40 +02:00
Saugat Pachhai (सौगात) 81f37be9d6 ci: timeout tests if it takes >5min
It most likely means it's frozen and unlikely to resume again. We'd want
to see where it froze, so this will provide us with a traceback.
2023-01-06 20:16:20 +05:45
Saugat Pachhai (सौगात) 3dfdd577e7 tests: xfail experiments-related flakey tests 2023-01-06 18:59:53 +05:45
dependabot[bot] bfb6a32b51 build(deps-dev): Bump dvc-data from 0.28.4 to 0.28.5
Bumps [dvc-data](https://github.com/iterative/dvc-data) from 0.28.4 to 0.28.5.
- [Release notes](https://github.com/iterative/dvc-data/releases)
- [Commits](https://github.com/iterative/dvc-data/compare/0.28.4...0.28.5)

---
updated-dependencies:
- dependency-name: dvc-data
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
2023-01-06 16:36:48 +09:00
Daniele Trifirò 33de761560 deps: unpin dvc-http 2023-01-05 21:15:33 +01:00
Daniele Trifirò ff38aed927 config: expose timeouts in http config
- `read_timeout` timeout for reading new data portions from the peer
- `connect_timeout` timeout for establishing new connections

For more information about individual timeouts meanings:

- `read_timeout` maps to `aiohttp`'s `sock_read` timeout
- `connect_timeout` applies to `aiohttp`'s `connect`, `sock_connect`
  timeouts

https://docs.aiohttp.org/en/stable/client_reference.html?highlight=clienttimeout#clienttimeout
2023-01-05 21:15:33 +01:00
Daniele Trifirò b62f17ffaf tests: move tests/unit/remote/test_http.py to dvc-http repo 2023-01-05 19:54:14 +01:00
Daniele Trifirò a0c781a676 exp save: fix help for --force 2023-01-04 17:57:29 +01:00
dberenbaum 6ac7dfc008 exp: fix tests and remove reset checks 2023-01-04 17:29:12 +01:00
dberenbaum b0372918ea exp: stop checking for unchanged experiments 2023-01-04 17:29:12 +01:00
Daniele Trifirò 4b0fa4d559 update: prevent re-download on every update 2023-01-03 18:52:48 +01:00
Saugat Pachhai (सौगात) a24c389674 internal: hoist resolver/top-level metrics/plots/params data into file level 2023-01-03 17:46:06 +05:45
karajan1001 f386f7c082 exp apply can accept exp names and failed exps as target
fix: #8182

1. `exp apply` can apply to failed experiments.
2. `exp apply` can accept exp names as target.
3. Add a new functional test for it.
2022-12-30 17:40:18 +08:00
karajan1001 eadd0da394 Refactor get_ref_and_entry_by_names
1. Move get_ref_and_entry_by_names from `exp remove` to `celery` for
   other commands usage.
2022-12-30 17:40:18 +08:00
karajan1001 06673dd212 Use SIGINT as the default signal in queue kill
fix: #8624
1. Add a new flag `--force` for `queue kill`
2. Make `SIGINT` to be the default option and `SIGKILL` to be with
   `--force`
3. Add tests for `queue kill`
4. Bump dvc-task into 0.1.9
2022-12-30 16:19:39 +08:00
dependabot[bot] 5f0b1edb40 build(deps-dev): Bump filelock from 3.8.2 to 3.9.0
Bumps [filelock](https://github.com/tox-dev/py-filelock) from 3.8.2 to 3.9.0.
- [Release notes](https://github.com/tox-dev/py-filelock/releases)
- [Changelog](https://github.com/tox-dev/py-filelock/blob/main/docs/changelog.rst)
- [Commits](https://github.com/tox-dev/py-filelock/compare/3.8.2...3.9.0)

---
updated-dependencies:
- dependency-name: filelock
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-12-30 09:20:26 +05:45
dependabot[bot] 05701e26db build(deps-dev): Bump scmrepo from 0.1.4 to 0.1.5
Bumps [scmrepo](https://github.com/iterative/scmrepo) from 0.1.4 to 0.1.5.
- [Release notes](https://github.com/iterative/scmrepo/releases)
- [Commits](https://github.com/iterative/scmrepo/compare/0.1.4...0.1.5)

---
updated-dependencies:
- dependency-name: scmrepo
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-12-30 11:23:42 +09:00
Daniele Trifirò 109288e1cd exp save: update --help 2022-12-29 20:51:52 +01:00
Daniele Trifirò 9e6f44bc1c get/ls/import: improve clone error messages 2022-12-29 20:13:39 +01:00
David de la Iglesia Castro 68b24307f9 post_live_metrics: Pass params on start event. 2022-12-28 11:43:37 +01:00
skshetry ea8a4a3db4 GHA: remove unused env from tests workflow 2022-12-27 10:26:29 +05:45
karajan1001 08ae68caf4 Make temp dir executed checkpoint experiment return result to workspace.
fix: #8612
For checkpoint experiment in some case users might want to give it a early
stopping to reduce variance.  But currently if we interrupt/kill the
experiment it will be marked as failed, and all of the completed
checkpoints will be removed as we cleanup all the running directly after
the process failed.

1. We raise CheckpointKilledError intead of StageCmdFailed error if at
   least one checkpoint had been commited.
2. Temp_dir executor will continue collecting data if the Checkpoint
   stage was interrupted.
3. Raise warnings if a checkpoint stage was incomplete and the other
   stages were not forwarded.
4. Add a new functional test for this
2022-12-26 18:25:43 +05:45
karajan1001 4400fb4090 queue stop --kill can kill false running status tasks
fix: #8702

1. replace simple `proc.kill` in `queue stop --kill` with the same logic as in
   `queue kill` to make it possible to set false status `running` tasks
    as faileed.
2. Modified the tests.
2022-12-26 17:16:46 +09:00
Fabian Zills 28848c5407 exp run --run-all: re-enable --jobs concurrency (#8608)
* re-enable --jobs concurrency

* use `start_workers` instead of `spawn_worker`

* make `spawn_worker` a private method.

* update tests: make `spawn_worker` a private method.
2022-12-26 16:49:46 +09:00
David de la Iglesia Castro b13184fcec tests: Fix flaky test_show_only_changed.
Some of the random exp names could start with `bar`.

https://github.com/iterative/dvc/actions/runs/3757008396/jobs/6383731723#step:5:79
2022-12-22 13:01:46 +01:00
dependabot[bot] ee5fbc72ab build(deps-dev): Bump dvc-render from 0.0.15 to 0.0.17
Bumps [dvc-render](https://github.com/iterative/dvc-render) from 0.0.15 to 0.0.17.
- [Release notes](https://github.com/iterative/dvc-render/releases)
- [Commits](https://github.com/iterative/dvc-render/compare/0.0.15...0.0.17)

---
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  dependency-type: direct:production
  update-type: version-update:semver-patch
...

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2022-12-22 12:17:56 +01:00
David de la Iglesia Castro d7fd68a1ae Add start and done calls with post_live_metrics. 2022-12-22 11:33:59 +01:00
Daniele Trifirò 59d6d5ea98 exp save: simplify implementation 2022-12-22 11:01:41 +01:00
dberenbaum 6fc0a6ff98 plots: accept any number of y data sources 2022-12-20 14:32:40 +01:00
dberenbaum b4b5db4b4e plots: accept list of y vals 2022-12-20 14:32:40 +01:00
Saugat Pachhai (सौगात) 23e4d376c9 index: remove unused APIs
These are being used by some users, but removing it for easier refactoring.
We are not using it ourselves.
2022-12-20 13:17:28 +05:45
dependabot[bot] 089a90c969 build(deps-dev): Bump pylint from 2.15.8 to 2.15.9
Bumps [pylint](https://github.com/PyCQA/pylint) from 2.15.8 to 2.15.9.
- [Release notes](https://github.com/PyCQA/pylint/releases)
- [Commits](https://github.com/PyCQA/pylint/compare/v2.15.8...v2.15.9)

---
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- dependency-name: pylint
  dependency-type: direct:production
  update-type: version-update:semver-patch
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Signed-off-by: dependabot[bot] <[email protected]>
2022-12-19 11:28:58 +05:45
dependabot[bot] 198daec421 build(deps): Bump pyinstaller from 5.6.2 to 5.7.0
Bumps [pyinstaller](https://github.com/pyinstaller/pyinstaller) from 5.6.2 to 5.7.0.
- [Release notes](https://github.com/pyinstaller/pyinstaller/releases)
- [Changelog](https://github.com/pyinstaller/pyinstaller/blob/develop/doc/CHANGES.rst)
- [Commits](https://github.com/pyinstaller/pyinstaller/compare/v5.6.2...v5.7.0)

---
updated-dependencies:
- dependency-name: pyinstaller
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-12-15 19:05:41 +05:45
dependabot[bot] 04eb6a9f00 build(deps-dev): Bump mypy from 0.990 to 0.991
Bumps [mypy](https://github.com/python/mypy) from 0.990 to 0.991.
- [Release notes](https://github.com/python/mypy/releases)
- [Commits](https://github.com/python/mypy/compare/v0.990...v0.991)

---
updated-dependencies:
- dependency-name: mypy
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-12-15 19:05:27 +05:45
Saugat Pachhai (सौगात) 0467f6a036 add index._plot_sources 2022-12-15 13:00:27 +05:45
David de la Iglesia Castro dc3d9c9677 bump DVCLive lower bound 2022-12-14 20:45:57 +01:00
Daniele Trifirò fcf92b2755 remove a few experiments names 2022-12-14 18:14:36 +01:00
David de la Iglesia CastroandDave Berenbaum c806275167 Bump dvclive lower bound (#8683)
* Bump dvclive lower bound

* Update pyproject.toml

Co-authored-by: Dave Berenbaum <[email protected]>

Co-authored-by: Dave Berenbaum <[email protected]>
2022-12-14 14:13:20 +00:00
dependabot[bot] bd1add0b95 build(deps-dev): Bump dvc-task from 0.1.6 to 0.1.8
Bumps [dvc-task](https://github.com/iterative/dvc-task) from 0.1.6 to 0.1.8.
- [Release notes](https://github.com/iterative/dvc-task/releases)
- [Commits](https://github.com/iterative/dvc-task/compare/0.1.6...0.1.8)

---
updated-dependencies:
- dependency-name: dvc-task
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  update-type: version-update:semver-patch
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2022-12-14 11:23:26 +08:00
Ivan Shcheklein e36f0e9d85 reset all indecies of brancher switch 2022-12-13 23:43:23 +02:00
dependabot[bot] bc1b8f3494 build(deps-dev): Bump pylint from 2.15.7 to 2.15.8
Bumps [pylint](https://github.com/PyCQA/pylint) from 2.15.7 to 2.15.8.
- [Release notes](https://github.com/PyCQA/pylint/releases)
- [Commits](https://github.com/PyCQA/pylint/compare/v2.15.7...v2.15.8)

---
updated-dependencies:
- dependency-name: pylint
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-12-13 14:53:57 +01:00
dependabot[bot] 9169d273e3 build(deps-dev): Bump filelock from 3.8.0 to 3.8.2
Bumps [filelock](https://github.com/tox-dev/py-filelock) from 3.8.0 to 3.8.2.
- [Release notes](https://github.com/tox-dev/py-filelock/releases)
- [Changelog](https://github.com/tox-dev/py-filelock/blob/main/docs/changelog.rst)
- [Commits](https://github.com/tox-dev/py-filelock/compare/3.8.0...3.8.2)

---
updated-dependencies:
- dependency-name: filelock
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

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2022-12-12 20:38:22 +01:00
David de la Iglesia Castro bb7512687c exp: Generate a human-readable name beforehand.
- Add `get_random_exp_name` to utils.
Generates a name (`f"{adjective}-{noun}"`) by randomly chosing pairs of adjetive, noun.
Recieves `scm` and `baseline_rev` and retries the random choice until a non-existing ref is found.

Closes https://github.com/iterative/dvc/issues/8650
2022-12-09 10:32:38 +01:00
Saugat Pachhai (सौगात) 334f297ad3 deps: remove 3.11 checks for hydra; has 3.11 support now 2022-12-09 10:32:12 +05:45
Peter Rowlands ace3ba0ef9 worktree push: disable rev flags 2022-12-09 09:21:19 +09:00
Peter Rowlands 959d149381 worktree fetch: support revs flags 2022-12-09 09:21:19 +09:00
Peter Rowlands 7a65d67e7f worktree: support recursive/with_deps targets 2022-12-09 09:21:19 +09:00
Peter Rowlands e9be6779ea worktree: disable run-cache push/fetch 2022-12-09 09:21:19 +09:00
Peter Rowlands 876d123f04 index: use lazy view loading 2022-12-08 20:56:05 +09:00
Peter Rowlands 2bfe403a28 deps: bump dvc-data to 0.28.4 2022-12-08 20:56:05 +09:00
Peter Rowlands 9bef123182 worktree: fix default worktree remote/odb exception 2022-12-08 11:01:42 +09:00
Peter Rowlands e98ca36f39 worktree push: only index known (tracked) files/dirs in the remote 2022-12-07 18:48:34 +09:00
Peter Rowlands b9bf73f043 push/fetch: support targets in cloud version push/fetch 2022-12-07 18:48:34 +09:00
dependabot[bot] 7628fe9d44 build(deps-dev): Bump pytest-xdist from 3.0.2 to 3.1.0
Bumps [pytest-xdist](https://github.com/pytest-dev/pytest-xdist) from 3.0.2 to 3.1.0.
- [Release notes](https://github.com/pytest-dev/pytest-xdist/releases)
- [Changelog](https://github.com/pytest-dev/pytest-xdist/blob/master/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest-xdist/compare/v3.0.2...v3.1.0)

---
updated-dependencies:
- dependency-name: pytest-xdist
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-12-06 20:16:21 +05:45
Peter Rowlands d415a05460 remote: disable gc and status -c for versioned remotes 2022-12-06 19:33:52 +09:00
Peter Rowlands f5699ce16b update: disable rev/to-remote/no-download for worktrees 2022-12-06 15:14:17 +09:00
Peter Rowlands baeedead3a update: add support for worktree update 2022-12-06 15:14:17 +09:00
Peter Rowlands 5630db55ad worktree: add support for updating outs 2022-12-06 15:14:17 +09:00
Peter Rowlands f1bd47ce0e index: make collect_targets public 2022-12-06 15:14:17 +09:00
dependabot[bot] 74a13a4d9a build(deps-dev): Bump dvc-render from 0.0.14 to 0.0.15
Bumps [dvc-render](https://github.com/iterative/dvc-render) from 0.0.14 to 0.0.15.
- [Release notes](https://github.com/iterative/dvc-render/releases)
- [Commits](https://github.com/iterative/dvc-render/compare/0.0.14...0.0.15)

---
updated-dependencies:
- dependency-name: dvc-render
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-12-02 08:30:37 +01:00
dberenbaum b7732a591d stage add: don't fail if unable to create .gitignore 2022-12-01 16:43:31 +01:00
Saugat Pachhai (सौगात) d57bb23c93 fix windows path handling 2022-12-01 15:56:26 +01:00
Saugat Pachhai (सौगात) 28402dedf1 add tests 2022-12-01 15:56:26 +01:00
Saugat Pachhai (सौगात) df60f5d9bf collect top-level params/plots/metrics together with stages 2022-12-01 15:56:26 +01:00
Saugat Pachhai (सौगात) 7ea73b2596 wip: top level params and metrics 2022-12-01 15:56:26 +01:00
Peter Rowlands aa2e830511 deps: bump dvc-data to 0.28.3 2022-12-01 16:02:59 +09:00
dependabot[bot] 6fdd6673f3 build(deps-dev): Bump pylint from 2.15.5 to 2.15.7
Bumps [pylint](https://github.com/PyCQA/pylint) from 2.15.5 to 2.15.7.
- [Release notes](https://github.com/PyCQA/pylint/releases)
- [Commits](https://github.com/PyCQA/pylint/compare/v2.15.5...v2.15.7)

---
updated-dependencies:
- dependency-name: pylint
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-11-30 16:33:01 +01:00
dberenbaum fac5f18dea plots: add tests for errors in vega converter 2022-11-29 16:08:29 +01:00
dberenbaum d8068430e7 plots: fix multi-file plots 2022-11-29 16:08:29 +01:00
Peter Rowlands 25b1ef9971 worktree push: separate worktree from version_aware 2022-11-29 22:45:16 +09:00
Peter Rowlands df563e43c1 remote: make worktree imply version_aware 2022-11-29 22:45:16 +09:00
karajan1001 3ba6b1f0bf Solve the unexpected error at the end of the queued tasks running
fix: #8615
1. This is because, at the end of the tasks,
the temp running directly will be deleted

1. Only fetch result during running (not during the result collection)
2. Bump into scmrepo 0.1.4 in which we wrapped `KeyError` into
   `SCMError`.
2022-11-29 15:24:19 +08:00
Peter Rowlands 6a9fbaf3d2 deps: bump dvc-data to 0.28.2 2022-11-29 14:37:11 +09:00
David de la Iglesia Castro a036eaf817 exp: save: Add include_untracked.
Allow to include a list of potentially untracked files.
Covers the DVCLive use case where in the first run the generated files won't be tracked in Git yet.
2022-11-28 15:49:34 +01:00
David de la Iglesia Castro 665185b9e7 exp: save: Handle staged changes.
Staged changes were causing a merge error.
Warn and unstage instead of erroring, to match exp run behavior.
2022-11-28 15:49:34 +01:00
David de la Iglesia Castro 43e281521e exp save: cleanup.
Remove metrics.

Move tests to separate file.

Fix `experiments.get_exact_name` usage.

Remove unused checkpoint logic.
2022-11-28 15:49:34 +01:00
Daniele Trifirò 73b46a5789 exp save: initial implementation 2022-11-28 15:49:34 +01:00
David de la Iglesia Castro 8124396218 exp: Expose baseline and name via run_env.
Required by DVCLive for the experiments onboarding and live metrics features.

Related (not sure if closes): https://github.com/iterative/dvc/issues/6668
2022-11-28 13:13:04 +01:00
Peter Rowlands e95ae5613d index: skip data index load on empty view 2022-11-28 18:49:32 +09:00
karajan1001 ca4dd08e37 Use temp branch name to avoid locking the exec branches in temp dir executor
fix: #8448
In our current temp dir executor, we use will first set EXEC_* branches
to revisions retrieved from stash entry. And push them to remote, but
because the push operation is very slow, our locking operation will make
the whole repository unusable.

1. Now we set revisions from stash entry to some temp branches and then
   push them to remote.
2022-11-28 17:04:16 +08:00
karajan1001 0ebc253a43 rwlock auto solve corrupted lockfile 2022-11-28 17:04:16 +08:00
karajan1001 6bfce5a5db Use a more granular lock on exp operations.
For now in `experiment.new`, `init_executor` and `collect_exectuor` we
lock the whole scm repo. We can make a more granular lock in these
operations.
2022-11-28 17:04:16 +08:00
karajan1001 5fa33a06bc Move EXEC_TMP_DIR and EXEC_PID_DIR to experiment.utils 2022-11-28 17:04:16 +08:00
Peter Rowlands 6a75f3c327 deps: bump dvc-data to 0.28.1 2022-11-28 16:10:31 +09:00
Ivan Shcheklein d7587556c9 exp list: cleanup and move logic inside repo api 2022-11-25 16:15:17 -08:00
skshetry bb80eab77a deps: add support for hdfs in Python 3.11 2022-11-25 11:16:42 +05:45
Ruslan Kuprieiev ab3f8fb1a4 Create hook-asyncssh.py
Fixes #7577
2022-11-24 23:25:00 +02:00
Yury 6edca79b79 repro dry: show information if the stage is cached
Fixes: #8342
2022-11-24 21:49:52 +02:00
Ruslan Kuprieiev 2a888970e8 build: fpm: don't double quote cli option
Leftover from #8611
2022-11-24 01:34:18 +02:00
Ruslan Kuprieiev 73fdfc8059 build: fpm: don't create .build-id/* files
These are leaking into our rpm packages.

Related https://github.com/iterative/dvc-s3-repo/issues/86
2022-11-24 01:02:44 +02:00
Ruslan Kuprieiev 8dc11417d2 testing: api: test opening a file in subdir
Related to #8420
2022-11-23 17:47:13 +02:00
b02855fb93 ui: Fix WSL check in open_browser (#8604)
* ui: Fix WSL check in `open_browser`

* Update dvc/ui/__init__.py

Co-authored-by: Peter Rowlands (변기호) <[email protected]>

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

Co-authored-by: Peter Rowlands (변기호) <[email protected]>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
2022-11-23 09:57:57 +00:00
Peter Rowlands af255a46b4 worktree: use progress bars in push/fetch 2022-11-23 13:05:51 +09:00
Peter Rowlands 2748492f6b worktree push: don't push existing versions 2022-11-23 13:05:51 +09:00
Peter Rowlands c69d3188a6 deps: bump dvc-data to 0.28.0 2022-11-22 19:04:18 +09:00
karajan1001 9b9c04e633 Solve the problem during executor running
fix #7693

The problem was when we gathered experiments, and at the same time,
the executor are creating new commits. It will make the checkpoint
top/head return by `get_running_exps`/`get_ref`/`branch_revs` not the
same one. And cause the problem described in #7693

To solve this we did
1. move the `get_rev` to the beginning of `exp show` to make sure the
   return results in `branch_revs`
2. Add a new function to move all of the properties that only belong to
   `head` of the checkpoint from the wrong place to the top.
3. Add a new unit test for it.
4. Force fetch_running_exp to return data.
5. fix a bug in tmp_dir_executor.
2022-11-22 17:44:55 +08:00
karajan1001 350e0fb1f7 queue kill: we can manually mark problematic tasks as failure
fix: #8461
fix: #8473
For now, for those inactive but uncompleted tasks, they still shown as
Running in `exp show` and `task queue`, we cannot remove them because
they are regarded as running, we cann't kill them because their are no
real process behind them.

1. Now we can examine these false running tasks and mark them as failure
   in `queue kill` command. #8461
2. Better msg handle for initliaizing tasks in `queue kill`#8473
3. Add new unit tests for both cases.
4. bump into new dvc-task 0.1.6
2022-11-22 13:33:23 +08:00
dberenbaum f14358bc72 plots: add test for default x label 2022-11-21 21:05:12 +01:00
David de la Iglesia Castro 705bc6ec82 Added test_infer_x_label 2022-11-21 21:05:12 +01:00
dberenbaum 61a02e6f56 plots: set default x label 2022-11-21 21:05:12 +01:00
Saugat Pachhai (सौगात) 8e5226ece0 cli: remove version action 2022-11-21 20:37:05 +05:45
Peter Rowlands 2a1af0b880 add: merge existing file meta for versioned dirs 2022-11-21 19:18:41 +09:00
Peter Rowlands 014d149512 out: move restore_fields logic into Output 2022-11-21 19:18:41 +09:00
Peter Rowlands 77ae4aa92e deps: bump dvc-azure to 2.20.5 2022-11-21 18:21:02 +09:00
Peter Rowlands 588471a811 deps: bump dvc-data to 0.27.0 2022-11-21 18:21:02 +09:00
dependabot[bot] e59c19e752 build(deps-dev): Bump dvc-render from 0.0.13 to 0.0.14
Bumps [dvc-render](https://github.com/iterative/dvc-render) from 0.0.13 to 0.0.14.
- [Release notes](https://github.com/iterative/dvc-render/releases)
- [Commits](https://github.com/iterative/dvc-render/compare/0.0.13...0.0.14)

---
updated-dependencies:
- dependency-name: dvc-render
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-11-21 10:08:09 +01:00
David de la Iglesia CastroandDave Berenbaum b0a92414fa hydra: Use OmegaConf.to_yaml for dumping .yaml output. (#8587)
* hydra: Use `OmegaConf.to_yaml` for dumping `.yaml` output.

Combining `OmegaConf.to_object` with our yaml DUMPER (ruaml.yaml) was not correctly handling strings like 'no'.

`OmegaConf.to_yaml` uses a custom string representer that correctly handles those cases.

Fixes #8583

* Update dvc/utils/hydra.py

Co-authored-by: Dave Berenbaum <[email protected]>

Co-authored-by: Dave Berenbaum <[email protected]>
2022-11-19 12:37:18 +00:00
Peter Rowlands dae500d7c7 worktree: use view instead of full index in push/fetch 2022-11-19 09:55:58 +09:00
Peter Rowlands a01bc2918e push/fetch: move worktree logic into repo.worktree 2022-11-19 09:55:58 +09:00
David de la Iglesia Castro a33bbc97d5 parsing: Escape str interpolation in dict unpacking.
Use subprocess.list2cmdline (windows) / shlex.quote

Closes #8203
Closes #8370
2022-11-18 20:00:16 +01:00
Paweł Redzyński ba2e8bdac7 plots: data conversion: adjust for viewer backend (#8421)
* plots: vega: converter: support multi series data split and props inference

Fixes: #7754, #8399
Related: iterative/studio#4369

* plots: converter: make converter infer x and y labels if not provided

* plots: vega: converter: roll back to datapoints format

* plots: vega: converter: refactor

* plots: infer labels on

* plots: get_plot_id: fix naming

* plots: vega: converter: notes regarding converting
2022-11-18 12:36:00 +00:00
Peter Rowlands 4d6e045989 status -c: exclude push: false outs 2022-11-18 16:32:29 +09:00
Peter Rowlands 00eea4560e import-url: default to push: false for cloud-versioned imports 2022-11-18 16:32:29 +09:00
Peter Rowlands 6e02dddabd output: check push in get_used_objs 2022-11-18 16:32:29 +09:00
Peter Rowlands b550c5e625 output: add PARAM_PUSH 2022-11-18 16:32:29 +09:00
Ruslan KuprieievandPeter Rowlands b36861ada9 tests: import: use odb.clear()
Co-authored-by: Peter Rowlands <[email protected]>
2022-11-17 10:56:01 +02:00
Ruslan Kuprieiev d482e26c99 deps: bump dvc-data to 0.26.0 2022-11-17 10:56:01 +02:00
dependabot[bot] a8ad59ae4e build(deps-dev): Bump dvc-render from 0.0.12 to 0.0.13
Bumps [dvc-render](https://github.com/iterative/dvc-render) from 0.0.12 to 0.0.13.
- [Release notes](https://github.com/iterative/dvc-render/releases)
- [Commits](https://github.com/iterative/dvc-render/compare/0.0.12...0.0.13)

---
updated-dependencies:
- dependency-name: dvc-render
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-11-16 11:13:05 +01:00
Ivan Shcheklein 76cc649f5e fix/8550+: cover with test 2022-11-16 15:16:37 +05:45
Ivan Shcheklein d52e1aa17b fix: exp list ref heads handling 2022-11-16 15:16:37 +05:45
Saugat Pachhai (सौगात) 65f61acffa tests: garbage collect sqlite connections on Windows + Python 3.11
There seems to be a regression in Python 3.11, where the sqlite
connections are not deallocated, due to some internal changes in
Python 3.11, where they are now using LRU cache. They are not deallocated
until `gc.collect()` is not called.

See https://github.com/python/cpython/issues/97641.
This affects only Windows, because when we try to remove the tempdir for
the exp run, the sqlite connection is open which prevents us from
deleting that folder.

Although this may happen in real scenario in `exp run`, I am only fixing
the tests by mocking `dvc.close()` and extending it by calling
`gc.collect()` after it. We could also mock `State.close()` but didnot
want to mock something that is not in dvc itself.

The `diskcache` uses threadlocal for connections, so they are expected
to be garbage collected, and therefore does not provide a good way to
close the connections. The only API it offers is `self.close()` and that
only closes main thread's connection. If we had access to connection,
an easier way would have been to explicitly call `conn.close()`.
But we don''t have such option at the moment.

Related: https://github.com/iterative/dvc/pull/8404#issuecomment-1310024661
GHA Failure: https://github.com/iterative/dvc/actions/runs/3437324559/jobs/5731929385#step:5:57
2022-11-16 08:02:43 +05:45
Peter Rowlands fdc689954f pyinstaller: drop google-api-client hooks 2022-11-15 22:07:05 +09:00
Peter Rowlands 076c48532d deps: bump dvc-gdrive to 2.19.1 2022-11-15 22:07:05 +09:00
David de la Iglesia Castro e4ea463c73 hydra: Raise error when name and sweeps. 2022-11-14 21:34:55 +01:00
Saugat Pachhai (सौगात) 87d8269365 typecheck: fix type error in _git_info 2022-11-14 10:21:31 +05:45
Peter Rowlands a753ee215f output: fix get_entry dep object generation for imports 2022-11-13 14:41:21 +02:00
dependabot[bot] 014a38fae2 build(deps-dev): Bump iterative-telemetry from 0.0.5 to 0.0.6
Bumps [iterative-telemetry](https://github.com/iterative/telemetry-python) from 0.0.5 to 0.0.6.
- [Release notes](https://github.com/iterative/telemetry-python/releases)
- [Commits](https://github.com/iterative/telemetry-python/compare/0.0.5...0.0.6)

---
updated-dependencies:
- dependency-name: iterative-telemetry
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-11-11 14:54:07 +09:00
Peter Rowlands 8913f5a6fe mypy: allow implicit-optional 2022-11-11 14:17:17 +09:00
dependabot[bot] 4ce9825c2b build(deps-dev): Bump mypy from 0.982 to 0.990
Bumps [mypy](https://github.com/python/mypy) from 0.982 to 0.990.
- [Release notes](https://github.com/python/mypy/releases)
- [Commits](https://github.com/python/mypy/compare/v0.982...v0.990)

---
updated-dependencies:
- dependency-name: mypy
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-11-11 14:17:17 +09:00
dependabot[bot] e9c5b5fa84 build(deps-dev): Bump dvc-gs from 2.19.1 to 2.20.0
Bumps [dvc-gs](https://github.com/iterative/dvc-gs) from 2.19.1 to 2.20.0.
- [Release notes](https://github.com/iterative/dvc-gs/releases)
- [Commits](https://github.com/iterative/dvc-gs/compare/2.19.1...2.20.0)

---
updated-dependencies:
- dependency-name: dvc-gs
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-11-11 13:33:10 +09:00
karajan1001 fa54c1af7c Solve run_all flaky tests
1. Modify run all to include currently running exps.
2. bump dvc-task to 0.1.5
2022-11-11 07:04:43 +05:45
karajan1001 9fbbfd07a6 Fix some celery queue realted ci failure
fix: #8403
1. remove some of the flaky mark
2. In `get_result` make sure the celery task is completed.
2022-11-11 07:04:43 +05:45
karajan1001 929de7c651 Solve the crash on getting name of applied experiment branch
fix: #8526
1. The current `get_names` will crash if an experiment branch had
   already been given a new branch name to it.

1. Solve the crash when we getting the name of a newly fixed experiment
   branch.
2. Add a new unit test to it.
2022-11-10 13:18:45 +08:00
blakeNaccarato 49af6e1435 plots: support svg
Add SVG to parser and parametrize an existing functionality test on SVG as well as JPG.

Fixes #6714.
2022-11-09 19:23:49 +02:00
skshetry a6bfc7db4e ci: test with 3.11 on all OSes (#8543)
* ci: test with 3.11 on all OSes

* Update tests.yaml

* Update tests.yaml
2022-11-09 12:05:27 +00:00
Yury 872a0d663e dvc exceptions CyclicGraphError: add more clear message for the exception
Fixes: #7915
2022-11-09 14:33:08 +05:45
dependabot[bot] c01583f3dd build(deps-dev): Bump dvc-task from 0.1.4 to 0.1.5
Bumps [dvc-task](https://github.com/iterative/dvc-task) from 0.1.4 to 0.1.5.
- [Release notes](https://github.com/iterative/dvc-task/releases)
- [Commits](https://github.com/iterative/dvc-task/compare/0.1.4...0.1.5)

---
updated-dependencies:
- dependency-name: dvc-task
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-11-09 16:37:14 +09:00
karajan1001 e0d41c7012 Make exp show handle errors better
fix: #8350

We shouldn't add locks to exp show to prevent race conditions
as this command is calling continuously by the extension.
So we make a better way to handle all kinds of reference failures.

1. Drop all based experiments if got a SCMError in baseline.
2. Drop all checkpoint experiments if any commit got a SCMError in
   one of checkpoint commit.
3. Drop the entire experiments if got a SCMError.
4. Add tests for each of the conditions above.
2022-11-08 20:12:22 +08:00
Peter Rowlands 628b992442 index: fix granular dir output view filtering 2022-11-08 19:28:10 +09:00
Peter Rowlands 99e7f52bbd index: support filtering by output in views 2022-11-08 19:28:10 +09:00
skshetry b2a275ee9e Create codeql.yml 2022-11-08 13:21:20 +05:45
skshetry 7e423b668f pkging: also post released packages to test.pypi.org 2022-11-07 18:57:53 +05:45
Saugat Pachhai (सौगात) 2c3956bdb0 exp init: fix live metrics path 2022-11-07 12:45:32 +01:00
Saugat Pachhai (सौगात) a48a19ce31 tests: ignore versions for subprojects 2022-11-07 12:45:32 +01:00
David de la Iglesia Castro 1de983f0de Remove live section support. 2022-11-07 12:45:32 +01:00
David de la Iglesia Castro eb20a8e049 deps: Bump dvclive to >= 1.0 2022-11-07 12:45:32 +01:00
David de la Iglesia Castro 78e25747a4 exp init: Update DVCLive paths.
Closes #8531
2022-11-07 12:45:32 +01:00
dberenbaum 240f0ebdc3 fix hydra_sweeps referenced before assignment 2022-11-04 15:59:26 +01:00
skshetry 69f78d3bb6 ci: bench: use 3.11 in benchmarks 2022-11-04 18:43:02 +05:45
skshetry 740fe504c9 Update README.rst 2022-11-04 18:27:50 +05:45
skshetry 7bb84286f5 readme: show downloads badge 2022-11-04 18:27:50 +05:45
Peter Rowlands 3891e81bdd index: load dir entries before generating target views 2022-11-04 19:09:48 +09:00
Peter Rowlands bb62833897 index: move import specific entry building out of index.data() property 2022-11-04 19:09:48 +09:00
Peter Rowlands fb703150ce output: load precomputed md5 from PARAM_FILES for non-local fs 2022-11-04 19:09:48 +09:00
Peter Rowlands 33d4ead8b6 import-url: save files for version-aware dir 2022-11-04 19:09:48 +09:00
Peter Rowlands 76b1f8c907 deps: bump dvc-data to 0.25.3 2022-11-04 19:09:48 +09:00
Paweł Redzyński d7152e360e Update dvc/repo/plots/__init__.py 2022-11-04 09:54:45 +05:45
dberenbaum ab69b88a21 plots: allow top-level strings 2022-11-04 09:54:45 +05:45
dependabot[bot] 43a8eab2e0 build(deps-dev): Bump dvc-s3 from 2.20.1 to 2.21.0
Bumps [dvc-s3](https://github.com/iterative/dvc-s3) from 2.20.1 to 2.21.0.
- [Release notes](https://github.com/iterative/dvc-s3/releases)
- [Commits](https://github.com/iterative/dvc-s3/compare/2.20.1...2.21.0)

---
updated-dependencies:
- dependency-name: dvc-s3
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

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2022-11-04 08:09:29 +05:45
Saugat Pachhai (सौगात) 15f35e827e fix windows 2022-11-03 23:07:28 +05:45
Saugat Pachhai (सौगात) 4d17c171f1 tests: use mocker 2022-11-03 23:07:28 +05:45
Saugat Pachhai (सौगात) c27005a8b7 migrate test_{repro,run}*.py to pytest 2022-11-03 23:07:28 +05:45
Saugat Pachhai (सौगात) ecd371f8ae migrate test_move.py to pytest 2022-11-03 23:07:28 +05:45
Saugat Pachhai (सौगात) bda1388bff migrate test_gc.py to pytest 2022-11-03 23:07:28 +05:45
Saugat Pachhai (सौगात) c02bd7f318 migrate some files to pytest 2022-11-03 23:07:28 +05:45
Saugat Pachhai (सौगात) fe1d805c80 migrate test_cli.py to pytest 2022-11-03 23:07:28 +05:45
Saugat Pachhai (सौगात) f9b0de883f migrate test_checkout.py to pytest 2022-11-03 23:07:28 +05:45
Saugat Pachhai (सौगात) 1cad8ea7fd migrate test_{add,analytics,init,unprotect,local,process}.py to pytest 2022-11-03 23:07:28 +05:45
David de la Iglesia Castro 08a643e005 hydra: Raise lazy DvcException for Python >= 3.11 2022-11-03 12:14:18 +01:00
Peter Rowlands 97a8b6978c deps: bump scmrepo to 0.1.3 2022-11-03 15:56:50 +09:00
Peter Rowlands b44099367e exp run: catch hydra import in 3.11 2022-11-03 15:38:53 +09:00
skshetry 29b3dc1f9e fix 3.10 in setup-python 2022-11-01 16:35:24 +05:45
Saugat Pachhai (सौगात) 6e73bd0b5b use setuptools_scm provided version 2022-11-01 12:44:31 +02:00
skshetry fa5a9abdeb build: bump pyinstaller packages python version to 3.10 (#8511)
bump pyinstaller packages python version to 3.10

As 3.11 is now released, let's bump pyinstaller packages to 3.10 (we always keep them 1 version behind).
2022-11-01 16:24:00 +05:45
dependabot[bot] 30775f7b31 build(deps): Bump pyinstaller from 5.6.1 to 5.6.2 (#8499)
Bumps [pyinstaller](https://github.com/pyinstaller/pyinstaller) from 5.6.1 to 5.6.2.
- [Release notes](https://github.com/pyinstaller/pyinstaller/releases)
- [Changelog](https://github.com/pyinstaller/pyinstaller/blob/develop/doc/CHANGES.rst)
- [Commits](https://github.com/pyinstaller/pyinstaller/compare/v5.6.1...v5.6.2)

---
updated-dependencies:
- dependency-name: pyinstaller
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

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Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2022-11-01 15:19:02 +05:45
Peter Rowlands e07aca9fd3 commit: skip changed_entries check on force commit 2022-11-01 18:05:41 +09:00
skshetry d2265f36ba ci: run only single macOS job (#8509)
* ci: run only single macOS job

* ci: use alls-green@release gate check
2022-11-01 14:30:46 +05:45
Saugat Pachhai (सौगात) d548618291 codecov: disable patch status 2022-11-01 14:02:59 +05:45
skshetry 48ff332f4a tests: remove old cleanup handler for Windows subprocess (#8508) 2022-11-01 13:57:50 +05:45
Saugat Pachhai (सौगात) 97f5ffc3c6 codecov: re-add codecov.yml 2022-11-01 13:56:54 +05:45
skshetry f6849d2f06 chore: remove bin dir and simplify tests.__main__ (#8507) 2022-11-01 13:05:53 +05:45
skshetry a172240536 Update release.yml 2022-11-01 11:43:25 +05:45
skshetry 129a4fbb92 fix release note config, it has to be inside changelog key (#8504) 2022-11-01 11:42:05 +05:45
skshetry c101514677 ci: add release note config (#8503) 2022-11-01 11:37:11 +05:45
skshetry 5e883bc00c tests: remove TestDir (#8502)
remove TestDir
2022-11-01 11:28:09 +05:45
skshetry 4b720e5820 remove .codecov.yml and MANIFEST.in, move .coveragerc to pyproject.toml (#8500)
* remove .codecov.yml and MANIFEST.in, move .coveragerc to pyproject.toml

* remove scripts/pypi_upload.sh
2022-11-01 10:11:55 +05:45
skshetry c0054fa57e remove zip-safe (#8498)
See https://setuptools.pypa.io/en/latest/deprecated/zip_safe.html. `zip_safe` is not required these days.
2022-11-01 07:50:18 +05:45
skshetry 6049494cef set name so that dependency graph works (#8497)
See https://github.com/orgs/community/discussions/6456
2022-11-01 07:09:21 +05:45
skshetry 120a5879bb ci: push package to test.pypi.org (#8495)
* ci: push package to test.pypi.org

* include dvc.testing and license file
2022-10-31 23:34:00 +05:45
Step Security Bot c8e39523c3 [StepSecurity] ci: Harden GitHub Actions (#8496)
Signed-off-by: StepSecurity Bot <[email protected]>
2022-10-31 23:27:18 +05:45
skshetry 7648e715f8 move project config to pyproject.toml (#8493)
* move config to pyproject.toml

* ci: use pyproject.toml for cache key

* pyproject.toml: use recursive dependencies for dev and all

* Update pyproject.toml
2022-10-31 22:43:48 +05:45
skshetry ca5ad6457f ci: cache lint deps, decrease test timeout (#8494) 2022-10-31 22:15:54 +05:45
dependabot[bot] de848d9598 build(deps-dev): Bump pytest-xdist from 2.5.0 to 3.0.2 (#8474)
Bumps [pytest-xdist](https://github.com/pytest-dev/pytest-xdist) from 2.5.0 to 3.0.2.
- [Release notes](https://github.com/pytest-dev/pytest-xdist/releases)
- [Changelog](https://github.com/pytest-dev/pytest-xdist/blob/master/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest-xdist/compare/v2.5.0...v3.0.2)

---
updated-dependencies:
- dependency-name: pytest-xdist
  dependency-type: direct:development
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>

Signed-off-by: dependabot[bot] <[email protected]>
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2022-10-31 21:23:57 +05:45
dependabot[bot] 4330f1a70f build(deps): Bump pyinstaller from 5.0 to 5.6.1 (#8475)
Bumps [pyinstaller](https://github.com/pyinstaller/pyinstaller) from 5.0 to 5.6.1.
- [Release notes](https://github.com/pyinstaller/pyinstaller/releases)
- [Changelog](https://github.com/pyinstaller/pyinstaller/blob/develop/doc/CHANGES.rst)
- [Commits](https://github.com/pyinstaller/pyinstaller/compare/v5.0...v5.6.1)

---
updated-dependencies:
- dependency-name: pyinstaller
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2022-10-31 21:23:43 +05:45
dependabot[bot] 144e21b552 build(deps-dev): Bump pytest from 7.1.3 to 7.2.0 (#8479)
Bumps [pytest](https://github.com/pytest-dev/pytest) from 7.1.3 to 7.2.0.
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest/compare/7.1.3...7.2.0)

---
updated-dependencies:
- dependency-name: pytest
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2022-10-31 21:20:21 +05:45
dependabot[bot] 7945428e5e build(deps-dev): Bump pylint from 2.15.4 to 2.15.5 (#8463)
Bumps [pylint](https://github.com/PyCQA/pylint) from 2.15.4 to 2.15.5.
- [Release notes](https://github.com/PyCQA/pylint/releases)
- [Commits](https://github.com/PyCQA/pylint/compare/v2.15.4...v2.15.5)

---
updated-dependencies:
- dependency-name: pylint
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2022-10-31 21:19:58 +05:45
skshetry 6df70d388e update pre-commit; add some more hooks (#8492)
* update pre-commit; add some more hooks

* Apply suggestions from code review
2022-10-31 21:04:11 +05:45
skshetry 4ca2158b9d tests: retry celery queue on timeout (#8488)
retry celery queue on timeout
2022-10-31 19:38:05 +05:45
Ruslan Kuprieiev f87e78d754 deps: bump dvc-data to 0.25.2 2022-10-31 14:41:23 +02:00
Ruslan Kuprieiev 5899440b46 deps: bump dvc-data to 0.25.1 2022-10-30 00:59:39 +03:00
Ruslan Kuprieiev 61ce52f259 yappi: add --yappi-separate-threads flag 2022-10-29 21:23:37 +03:00
Ruslan Kuprieiev 475ef3ce65 Delete release-drafter.yml 2022-10-29 19:39:55 +03:00
karajan1001 22eb9051f6 Move the function out of rwlock 2022-10-29 08:53:02 +08:00
karajan1001 9ef1d1d6e6 Move away tempdir related change from basequeue. 2022-10-29 08:53:02 +08:00
karajan1001 d5cc54ad35 dvc exp show auto solve corrupted rwlock info
fix: #8450

1. Add a new function check_rwlock to check and autocorrect rwlock info.
2. Add related tests for it.
2022-10-29 08:53:02 +08:00
karajan1001 47ece317a5 Refactor: move get_running_exps to queue
Move logic of `get_running_exps` from `repo.experiments` to each queue.
2022-10-29 08:53:02 +08:00
Ruslan Kuprieiev 8f82a421a0 index: support multiple targets within output in IndexView
stage_infos might contain the same stage multiple times, but with different
filter_info, so we shouldn't convert it to dict, as that makes us lose all
but one filter_info's.
2022-10-25 13:37:44 +03:00
karajan1001 ed2ccaf54c Use celery status as the exp show status
fix: #8349
`tasks status turned to queued for 1 second before turned into success.`
is because in previous the status is using the output of
`get_running_exps` in `repo.expereiments` and when entering the
collect result progress, the `get_running_exps` will mark the tasks to
be not running because the `info.result` is not None. Here we use the
output of the celery queue as the universal standard for the tasks
status.

1. Use celery status as the exp show status
2022-10-24 14:41:27 +08:00
Ruslan Kuprieiev 23534063ca push: use build_tree instead of tree_from_index 2022-10-21 17:02:33 +03:00
Ruslan Kuprieiev d56957416e index: data: don't forget to set entry.key 2022-10-21 17:02:33 +03:00
dependabot[bot] 269e12287c build(deps): Bump dvc-data from 0.20.0 to 0.22.0
Bumps [dvc-data](https://github.com/iterative/dvc-data) from 0.20.0 to 0.22.0.
- [Release notes](https://github.com/iterative/dvc-data/releases)
- [Commits](https://github.com/iterative/dvc-data/compare/0.20.0...0.22.0)

---
updated-dependencies:
- dependency-name: dvc-data
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-10-21 17:02:33 +03:00
karajan1001 5413187c2d Give lock acquiring more time in concurrency situation.
fix: #8417

1. Give the executor initialization and result collection more time for
   acquiring locks.
2022-10-21 10:18:28 +08:00
karajan1001 d56376c70a exp show: Use batch call on scm.describe
fix: #8451

1. Change the call of scm.describe from individual revision to a
   collection of them. Accelerate the run speed of `exp show`
2. Bump scmrepo to 0.1.2
2022-10-20 17:22:25 +08:00
Saugat Pachhai (सौगात) 1d5d15644d debug: add --show-stack/--ss flag 2022-10-19 17:13:22 +03:00
Peter Rowlands a0e45cdd5d index: remove partial_imports in favor of repo.imports view 2022-10-19 17:12:16 +03:00
Peter Rowlands 7fe316b8e8 import-url: only unpartial imports in workspace 2022-10-19 17:12:16 +03:00
Peter Rowlands 3478a7e6a9 import-url: support cloud versioning 2022-10-19 17:12:16 +03:00
Peter Rowlands d1fa3d2c21 fetch: use data index save() for fetching imports 2022-10-19 17:12:16 +03:00
Peter Rowlands b594337a69 index/out: add out.get_entry() 2022-10-19 17:12:16 +03:00
Peter Rowlands 36f6f29ac8 index: set source fs/path for import data index entries 2022-10-19 17:12:16 +03:00
skshetry bbaf57c5b2 _debug: minor refactor on debugtools (#8454)
* _debug: minor refactor on debugtools

* delete test
2022-10-19 18:01:20 +05:45
David de la Iglesia Castro 61f8478885 tests: Remove test_ssh
Moved to dvc-ssh repo in https://github.com/iterative/dvc-ssh/pull/13
2022-10-19 12:35:11 +03:00
dependabot[bot] 4493da0f04 build(deps): Bump dvc-task from 0.1.3 to 0.1.4
Bumps [dvc-task](https://github.com/iterative/dvc-task) from 0.1.3 to 0.1.4.
- [Release notes](https://github.com/iterative/dvc-task/releases)
- [Commits](https://github.com/iterative/dvc-task/compare/0.1.3...0.1.4)

---
updated-dependencies:
- dependency-name: dvc-task
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

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2022-10-19 15:40:56 +08:00
Peter Rowlands 7c225206ab fetch/push: use dvc-data TransferResult 2022-10-18 19:02:47 +09:00
Peter Rowlands be5a54bfb4 deps: bump dvc-data to 0.20.0 2022-10-18 19:02:47 +09:00
skshetry d9ce9b4fef testing.api_tests: remove comment from fixture (#8444) 2022-10-18 15:44:59 +05:45
dependabot[bot]andskshetry 689988592f build(deps-dev): Bump pylint from 2.15.2 to 2.15.4 (#8424)
* build(deps-dev): Bump pylint from 2.15.2 to 2.15.4

Bumps [pylint](https://github.com/PyCQA/pylint) from 2.15.2 to 2.15.4.
- [Release notes](https://github.com/PyCQA/pylint/releases)
- [Commits](https://github.com/PyCQA/pylint/compare/v2.15.2...v2.15.4)

---
updated-dependencies:
- dependency-name: pylint
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

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* Remove astroid

Signed-off-by: dependabot[bot] <[email protected]>
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Co-authored-by: skshetry <[email protected]>
2022-10-18 09:27:54 +05:45
dependabot[bot] 1ddfca856a build(deps): Bump dvc-data from 0.18.0 to 0.19.0 (#8442)
Bumps [dvc-data](https://github.com/iterative/dvc-data) from 0.18.0 to 0.19.0.
- [Release notes](https://github.com/iterative/dvc-data/releases)
- [Commits](https://github.com/iterative/dvc-data/compare/0.18.0...0.19.0)

---
updated-dependencies:
- dependency-name: dvc-data
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>

Signed-off-by: dependabot[bot] <[email protected]>
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2022-10-18 09:27:27 +05:45
dependabot[bot] e451ce7d0b build(deps-dev): Bump pytest-mock from 3.9.0 to 3.10.0 (#8402)
Bumps [pytest-mock](https://github.com/pytest-dev/pytest-mock) from 3.9.0 to 3.10.0.
- [Release notes](https://github.com/pytest-dev/pytest-mock/releases)
- [Changelog](https://github.com/pytest-dev/pytest-mock/blob/main/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest-mock/compare/v3.9.0...v3.10.0)

---
updated-dependencies:
- dependency-name: pytest-mock
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2022-10-18 07:52:16 +05:45
pre-commit-ci[bot] de05659a93 [pre-commit.ci] pre-commit autoupdate (#8441)
updates:
- [github.com/codespell-project/codespell: v2.2.1 → v2.2.2](https://github.com/codespell-project/codespell/compare/v2.2.1...v2.2.2)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
2022-10-18 07:47:20 +05:45
Daniele Trifirò e9244924d7 plots: allow definition of plots section as list 2022-10-17 12:06:31 +02:00
David de la Iglesia Castro 3bbf8fa7d2 config: ssh: Add passphrase and ask_passphrase options.
Bump `dvc-ssh`.

Fixes #8137
2022-10-14 12:11:31 +03:00
Peter Rowlands ed87c308ba deps: bump dvc-data to 0.18.0
- callbacks: update to dvc-data 0.18.0 behavior
2022-10-13 20:00:19 +09:00
Peter Rowlands add28f73f1 brancher: clear repo.index on each branch 2022-10-11 16:12:00 +03:00
Peter Rowlands 2bc693fb4c index: add IndexView and Index.targets_view() 2022-10-11 16:12:00 +03:00
Peter Rowlands ac57fa53fe index: cache target collection 2022-10-11 16:12:00 +03:00
Peter Rowlands 0ca0d94cb2 output: mypy fixes 2022-10-11 16:12:00 +03:00
David de la Iglesia Castro c12deaa62c exp show: Preserve full branch and tag names.
Closes #7933
2022-10-11 19:55:36 +09:00
pre-commit-ci[bot] 5606608867 [pre-commit.ci] pre-commit autoupdate
updates:
- [github.com/ambv/black: 22.8.0 → 22.10.0](https://github.com/ambv/black/compare/22.8.0...22.10.0)
2022-10-11 14:43:51 +08:00
Ruslan Kuprieiev 6711b653a5 tests: add tests for dvcignore.walk 2022-10-10 21:43:44 +03:00
Ruslan Kuprieiev faef8eec2c tests: ignore: use dvcignore.find directly 2022-10-10 21:43:44 +03:00
Ruslan Kuprieiev 11766c8839 ignore: walk: support detail=True 2022-10-10 21:43:44 +03:00
Peter Rowlands 1180a2f051 deps: bump dvc-data to 0.17.1 2022-10-10 16:25:07 +09:00
Ronan Lamy f59a99d442 Skip some tests on FSs that don't support dirs (like http) 2022-10-07 19:03:57 +03:00
Ronan Lamy d5f5e14183 make get-url testable with the dvc plugins 2022-10-07 19:03:57 +03:00
Ronan Lamy 10f60bed58 make get-url consistent with ls-url
Also, move parse_external_url() to dvc.fs as it's now used both by
ls_url() and get_url().
2022-10-07 19:03:57 +03:00
Ronan Lamy 6a0d7f9c51 Extract Output.download() into a function
Also, move the method to Dependency, since it's only used there.
2022-10-07 19:03:57 +03:00
dependabot[bot] 8640beb998 build(deps): Bump dvc-render from 0.0.11 to 0.0.12
Bumps [dvc-render](https://github.com/iterative/dvc-render) from 0.0.11 to 0.0.12.
- [Release notes](https://github.com/iterative/dvc-render/releases)
- [Commits](https://github.com/iterative/dvc-render/compare/0.0.11...0.0.12)

---
updated-dependencies:
- dependency-name: dvc-render
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-10-06 17:30:35 +02:00
karajan1001 884182f6f2 Add "status" to replace "running" and "queued" in output of exp show
fix: #7986
1. Add two new flags  `--hide-queued` and  `--hide-failed` to `exp show`
2. Allow `exp show` to show failed experiments.
3. Add unit test for the failed experiments shown.
4. Add name support for failed exp
5. Add error msg to the `exp show` output
2022-10-06 17:20:03 +08:00
Peter Rowlands 7393ebdcb4 logger: init logging config before colorama 2022-10-04 21:27:24 +03:00
David de la Iglesia Castro cf651c52a1 hydra: Fix append and remove sweeps.
Closes #8376
2022-10-04 19:05:12 +02:00
Ronan Lamy a3f20eb6f4 ls-url: make config and recursive kwarg-only 2022-10-04 14:37:29 +03:00
Ronan Lamy d60edcd88e ls-url: fix doc URL 2022-10-04 14:37:29 +03:00
Ronan Lamy a6cdb9efd2 ls-url: remove redundant tests 2022-10-04 14:37:29 +03:00
Ronan Lamy 4a558edc59 ls-url: remove now unused _ls_url() 2022-10-04 14:37:29 +03:00
Ronan Lamy 8ff92cc7b0 ls-url: refactor tests so they work with all supported plugins.
Add `config` argument to ls_url() (only used in testing) to be able
to set up the FSs that do require it.
2022-10-04 14:37:29 +03:00
Ronan Lamy bd88000e2f ls-url: add ls-url tests for dvc plugins 2022-10-04 14:37:29 +03:00
Ronan Lamy 4da4c69985 ls-url: chain exceptions and simplify exc handling 2022-10-04 14:37:29 +03:00
Ronan Lamy 8a1c757497 fix test on Windows 2022-10-04 14:37:29 +03:00
Ronan Lamy 22655fa46d ls-url: update command test for --recursive 2022-10-04 14:37:29 +03:00
Ronan Lamy 103a0e2523 ls-url: simplify parse_external_url() 2022-10-04 14:37:29 +03:00
Ronan Lamy 0d025e5943 ls-url: add --recursive option 2022-10-04 14:37:29 +03:00
Ronan Lamy b01c4f8b05 ls-url: call get_cloud_fs() directly
Note: removes a spurious check on whether the target is a dvc file.
2022-10-04 14:37:29 +03:00
Ronan Lamy c27125d9c0 Replace Output with a local copy and remove all unused code 2022-10-04 14:37:29 +03:00
Ronan Lamy 71734a3d09 ls-url: fix test_file() on Windows and add another case 2022-10-04 14:37:29 +03:00
Ronan Lamy fa7619dfee ls-url: create basic version of dvc ls-url command
For now, this only takes a URL (or local path) and lists its contents
if the protocol supports it. The command fails if the target doesn't
exist and returns the (absolute) path to the target if it's not a
directory.
2022-10-04 14:37:29 +03:00
dependabot[bot] 67aaf6a192 build(deps-dev): Bump mypy from 0.981 to 0.982
Bumps [mypy](https://github.com/python/mypy) from 0.981 to 0.982.
- [Release notes](https://github.com/python/mypy/releases)
- [Commits](https://github.com/python/mypy/compare/v0.981...v0.982)

---
updated-dependencies:
- dependency-name: mypy
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-10-04 12:02:42 +09:00
Daniele Trifirò 3adede8427 repo: use realpath to in _get_filepath when loading stages 2022-10-03 15:29:01 +02:00
Daniele Trifirò a686dded15 repo: fix crash while collecting stages with symlinks
closes #8345
2022-10-03 15:29:01 +02:00
Daniele Trifirò 8b1e61d3c5 update: update -help 2022-10-03 14:25:50 +02:00
Daniele Trifirò 4594087786 import: fix rev lock and pull with --no-download 2022-10-03 14:25:50 +02:00
Daniele Trifirò 5d69f57abf tests: add test_partial_import_pull 2022-10-03 14:25:50 +02:00
dependabot[bot] 53c886e407 build(deps-dev): Bump mypy from 0.971 to 0.981
Bumps [mypy](https://github.com/python/mypy) from 0.971 to 0.981.
- [Release notes](https://github.com/python/mypy/releases)
- [Commits](https://github.com/python/mypy/compare/v0.971...v0.981)

---
updated-dependencies:
- dependency-name: mypy
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-10-02 12:44:42 +09:00
Ruslan Kuprieiev 890fbf3a6e deps: bump dvc-data to 0.14.0 2022-10-01 21:56:49 +03:00
skshetry 81abf2e412 dvcfs tests: copy pytest param instead of in-place update (#8388)
The param was being modified in-place, due to which successive runs would fail.
2022-10-01 14:07:38 +05:45
Ronan Lamy 3a9d0244b5 test: rename dvc.testing.test_*.py so pytest doesn't handle them as test files 2022-10-01 01:03:09 +03:00
dberenbaum 423166cb0f cli: remove foreach-group from help text 2022-09-30 19:54:03 +02:00
Peter Rowlands 4904286307 config: wrap UnicodeDecodeErrors on load 2022-09-30 11:45:43 +09:00
dependabot[bot] e556c632b3 build(deps-dev): Bump pytest-mock from 3.8.2 to 3.9.0
Bumps [pytest-mock](https://github.com/pytest-dev/pytest-mock) from 3.8.2 to 3.9.0.
- [Release notes](https://github.com/pytest-dev/pytest-mock/releases)
- [Changelog](https://github.com/pytest-dev/pytest-mock/blob/main/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest-mock/compare/v3.8.2...v3.9.0)

---
updated-dependencies:
- dependency-name: pytest-mock
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-09-29 14:37:06 +09:00
dependabot[bot] db0c6e9086 build(deps-dev): Bump pytest-cov from 3.0.0 to 4.0.0
Bumps [pytest-cov](https://github.com/pytest-dev/pytest-cov) from 3.0.0 to 4.0.0.
- [Release notes](https://github.com/pytest-dev/pytest-cov/releases)
- [Changelog](https://github.com/pytest-dev/pytest-cov/blob/master/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest-cov/compare/v3.0.0...v4.0.0)

---
updated-dependencies:
- dependency-name: pytest-cov
  dependency-type: direct:development
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-09-29 13:48:47 +09:00
dependabot[bot] 4177a5dc9e build(deps): Bump dvc-task from 0.1.2 to 0.1.3
Bumps [dvc-task](https://github.com/iterative/dvc-task) from 0.1.2 to 0.1.3.
- [Release notes](https://github.com/iterative/dvc-task/releases)
- [Commits](https://github.com/iterative/dvc-task/compare/0.1.2...0.1.3)

---
updated-dependencies:
- dependency-name: dvc-task
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-09-29 13:47:49 +09:00
Ronan Lamy 04af944e22 fs: test and slightly refactor get_fs_config() 2022-09-28 22:06:40 +03:00
pre-commit-ci[bot] 13b2ac3bd1 [pre-commit.ci] pre-commit autoupdate
updates:
- [github.com/ambv/black: 22.6.0 → 22.8.0](https://github.com/ambv/black/compare/22.6.0...22.8.0)
2022-09-28 17:07:09 +09:00
Paweł Redzyński 25ea5f35ec plots: pass all types of plots in --json option
Related: iterative/vscode-dvc#1757
2022-09-27 14:23:42 +02:00
karajan1001 6bd14b21ef Move infofile operation to executor and
Currently infofile dump was spread in both executor and queue classes.
put them all into executor to make them more managable. Move all ending
dump operations to the cleanup function, because the collect_result progress
might failed because of git operations, in which can guarantee them to
be run in a `finally` scope.
2022-09-26 16:25:47 +08:00
karajan1001 c2829f4ce8 Make executor info compatible with old versions. 2022-09-26 16:25:47 +08:00
karajan1001 d8a4ecd68f Remove the stale manager code 2022-09-26 16:25:47 +08:00
karajan1001 7fb9dcec12 Add tests for executor status
1. Move some basic test script from function tests to unit test.
2. Add success/failed tests for the status change of `tempdir`, `celery`, `workspace` running case.
2022-09-26 16:25:47 +08:00
karajan1001 f23bc71eea Use task status to replace collected.
fix: #8088

1. Use status to replace collected.
2. Make status show more accurate.

Fix lint
2022-09-26 16:25:47 +08:00
karajan1001 8b326137c6 Add a new attribute status to ExecutorInfo file
1. Add a new attribute status to ExecutorInfo file
2. Update running status to the executor infofile.
2022-09-26 16:25:47 +08:00
karajan1001 90109bccd7 Refactor seperate the initialization of executor and setup environment
Reason:
1. Need some more granular control over initialization progress of
   executor.

What done:
1. Seperate `init_git` and `init_cache` progress out from setup_executor
2. Move `set_ref` into `init_git`
2022-09-26 16:25:47 +08:00
Ruslan Kuprieiev 8c484645fa cloud-versioning: better handling for directories 2022-09-26 02:54:17 +03:00
dberenbaum c039e9a6e7 merge-driver: support removes and changes 2022-09-23 23:22:08 +03:00
Ruslan Kuprieiev 10cfa0d5d7 fetch: use md5() before save() 2022-09-23 15:12:19 +03:00
dependabot[bot] ecab4a22fe build(deps): Bump dvc-data from 0.10.1 to 0.12.0
Bumps [dvc-data](https://github.com/iterative/dvc-data) from 0.10.1 to 0.12.0.
- [Release notes](https://github.com/iterative/dvc-data/releases)
- [Commits](https://github.com/iterative/dvc-data/compare/0.10.1...0.12.0)

---
updated-dependencies:
- dependency-name: dvc-data
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-09-23 15:12:19 +03:00
dberenbaum 4f354f5333 pull: hide glob option 2022-09-23 14:13:25 +03:00
skshetry f6b1f01a5c aiohttp: remove AIOHTTP_NO_EXTENSIONS envvar (#8353)
* aiohttp: remove AIOHTTP_NO_EXTENSIONS envvar

aiohttp now provides wheel for 3.11

* advertise 3.11 support
2022-09-23 16:23:37 +05:45
Saugat Pachhai (सौगात) 6d17bcce93 cli: add help for foreach 2022-09-23 13:36:34 +03:00
karajan1001 8da04c7c81 Solve the on_diverged function not executed error.
fix: #8348
2022-09-23 17:20:31 +08:00
Paweł Redzyńskiandpre-commit-ci[bot] c617769a1d deps: bump codespell (#8199)
[pre-commit.ci] pre-commit autoupdate

updates:
- [github.com/codespell-project/codespell: v2.1.0 → v2.2.1](https://github.com/codespell-project/codespell/compare/v2.1.0...v2.2.1)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
2022-09-22 19:31:24 +05:45
Daniele Trifirò 69c3c83833 import/import-url: ignore outs when using --no-download 2022-09-22 00:29:46 +03:00
David de la Iglesia Castro 122a68398e hydra: Fix sweeps on Defaults List.
Defaults List overrides (`defaults/foo=1,2`) were not working because of the inclusion of the `/` character.
Fixed it by updating how we construct the `merged_overrides` and added a regression test.
2022-09-21 15:48:19 +02:00
Martino Mensio 748c015638 fixed link to "get started: pipelines" docs 2022-09-21 13:45:39 +03:00
skshetry ba1ab86078 document dvcfs (#8332) 2022-09-21 11:30:15 +05:45
skshetry aaa467a96b fs.callback.RichCallback: add transient support (#8335) 2022-09-20 17:03:17 +05:45
Daniele Trifirò ed15e59115 deps: bump dvc-http to 2.27.2 2022-09-20 13:18:18 +03:00
skshetry e63cb31a66 dvcfs: remove get-file implementation, make dvcfs non-cachable (#8331)
dvcfs: remove get-file implementation
2022-09-20 15:24:44 +05:45
Peter Rowlands 4c1f172132 deps: bump dvc-data to 0.10.1 2022-09-20 18:30:35 +09:00
Ruslan Kuprieiev d2a31eb660 push: use update_pipeline=False for cloud versioning 2022-09-19 17:21:43 +03:00
Ruslan Kuprieiev 625b735502 deps: bump dvc-s3 2022-09-19 14:57:35 +03:00
skshetry 7e93fc8c4a lint: pin astroid version (#8323)
See https://github.com/PyCQA/pylint/issues/7488. Pylint is failing on our codebase.
2022-09-19 12:22:21 +05:45
skshetry 853a918d5c cli: rename cli util, hide data ls from the help (#8321) 2022-09-19 10:29:52 +05:45
skshetry b5f20f8467 use native concurrency (#8320) 2022-09-19 10:23:55 +05:45
skshetry 2f6bc70b45 remove mergify (#8319) 2022-09-19 09:50:56 +05:45
Daniele Trifirò 197f522175 deps: add testing group for dvc.testing requirements 2022-09-17 00:54:35 +03:00
Ruslan Kuprieiev 35e6f082a4 analytics: use iterative-telemetry for user_id lookup 2022-09-17 00:45:45 +03:00
Ruslan Kuprieiev 4531fec2b7 deps: bump dvc-data to 0.10.0 2022-09-16 22:56:56 +03:00
skshetry 391bb29be2 dvcfs: rename DvcFileSystem to DVCFileSystem (#8307) 2022-09-16 18:18:55 +05:45
Peter Rowlands 146bdbbe9b deps: bump dvc-azure to 2.20.4 2022-09-16 17:47:38 +09:00
Saugat Pachhai (सौगात) c1f659bdd7 dvcfs: prevent opening file object in write mode 2022-09-16 11:31:24 +03:00
dependabot[bot] 0fe8f4e368 build(deps): Bump dvc-render from 0.0.10 to 0.0.11
Bumps [dvc-render](https://github.com/iterative/dvc-render) from 0.0.10 to 0.0.11.
- [Release notes](https://github.com/iterative/dvc-render/releases)
- [Commits](https://github.com/iterative/dvc-render/compare/0.0.10...0.0.11)

---
updated-dependencies:
- dependency-name: dvc-render
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-09-16 09:58:16 +02:00
Ruslan Kuprieiev 3cbf319e0d loader: don't forget to set meta.isdir
Leftover from #8273

Fixes #8300
2022-09-15 22:53:48 +03:00
Ruslan Kuprieiev 477a6e177f index: use tree obj if using inline files
Leftover from #8273
2022-09-15 21:25:28 +03:00
skshetry f854fc6365 try to split testsuites into two (#8297)
try to split tests
2022-09-15 22:11:02 +05:45
skshetry 1b90683e02 dvcfs: add fsspec-compliance tests (#8296)
dvcfs: add tests
2022-09-15 18:42:50 +05:45
skshetry d762372d55 schema: add strict schema validation for top-level plots (#8289)
schema: add strict schema validation for plots
2022-09-15 16:30:10 +05:45
Peter Rowlands f3d304580a schema: update lockfile schema for versioning and dir files 2022-09-15 13:13:31 +03:00
Peter Rowlands 0e0d46e232 output: lazy load tree from files list in get_obj 2022-09-15 13:13:31 +03:00
Peter Rowlands 95ae018ed8 push/fetch: support dirs in worktree remotes 2022-09-15 13:13:31 +03:00
Peter Rowlands c29e721823 output: support loading/dumping dir trees from metadata 2022-09-15 13:13:31 +03:00
Peter Rowlands a9c7032d50 dvc-data: bump to 0.8.0 2022-09-15 13:13:31 +03:00
Peter Rowlands ecb767d622 index: add workspace/key generation helper 2022-09-15 13:13:31 +03:00
Saugat Pachhai (सौगात) fa45a9bbba dvcfs: default open to binary mode 2022-09-15 13:11:52 +03:00
daniele f50ae589ba deps: remove unused mock dep (#8290) 2022-09-15 07:34:21 +05:45
Daniele Trifirò 611c114f01 import-url: pass fs_config down from imp_url to get_cloud_fs 2022-09-14 22:26:19 +03:00
skshetry fdc18d5483 expose dvcfs in dvc.api and add to fsspec's registry (#8287)
* expose dvcfs in dvc.api and add to fsspec's registry

* readd __all__ to avoid exposing modules
2022-09-14 20:02:56 +05:45
David de la Iglesia Castro 3b532b7d59 exp run: Support hydra basic sweeper.
Requires `--queue` to be used alongside `--set-param`.

Doesn't strictly require `hydra.config.enabled`.

Add `get_hydra_sweeps` to `dvc/utils/hydra.py`.  Uses hydra `BasicSweeper` to generate the different sweeps.

`glob` syntax for sweeps is not supported in this P.R.

Closes #8083

---

Using setup from https://hydra.cc/docs/tutorials/basic/your_first_app/composition/ :

```console
$ dvc exp run -S "db=mysql,postgresql" -S "schema=warehouse,school" --queue
Queueing with '{'params.yaml': ['db=mysql', 'schema=warehouse']}'.
Queued experiment '5ab98b8' for future execution.
Queueing with '{'params.yaml': ['db=mysql', 'schema=school']}'.
Queued experiment '57c2fb6' for future execution.
Queueing with '{'params.yaml': ['db=postgresql', 'schema=warehouse']}'.
Queued experiment 'b9d6391' for future execution.
Queueing with '{'params.yaml': ['db=postgresql', 'schema=school']}'.
Queued experiment '145cd55' for future execution.
```
2022-09-13 13:43:30 +02:00
skshetry e78c4455de dvcfs: remove unused config code for opening a repo, change signature (#8277)
dvcfs: remove unused code for opening a repo
2022-09-13 09:26:33 +05:45
skshetry 8e5f4a8f35 data ls: new command to show metadata with outputs (#8252)
data ls: add new command to show metadata for the outputs
2022-09-09 17:36:24 +05:45
Saugat Pachhai (सौगात) cb3159e586 dvcfs: remove config 2022-09-09 13:16:27 +03:00
skshetry 7b301b09a1 data status: fix type hints (#8275) 2022-09-09 13:38:41 +05:45
skshetry 55b16166c8 add/import/import-url: update help message for labels/type/desc (#8271) 2022-09-08 23:09:10 +05:45
Ronan Lamy c70d0bd14d fs: cleanup and rename _get_fs_pair_2() to _get_subrepo_info() 2022-09-08 17:39:32 +03:00
Ronan Lamy b99a0cd6ca fs: _get_dvc_path() cannot be called with dvc_fs=None 2022-09-08 17:39:32 +03:00
Ronan Lamy d4170b2ec0 fs: refactor _get_fs_pair_2() 2022-09-08 17:39:32 +03:00
Ronan Lamy a3181bb509 fs: remove _get_fs_pair() 2022-09-08 17:39:32 +03:00
Ronan Lamy 4d6b90502b fs: improve performance of _DvcFileSystem._update()
Avoid back and forth conversions between key tuples and path strings.
2022-09-08 17:39:32 +03:00
Ronan Lamy 947427f4d9 fs: remove dead code 2022-09-08 17:39:32 +03:00
Ronan Lamy 0482a1a88b fs: simplify data flow
This uses the fact that repo.fs is always self.repo.fs and that
self.repo.fs always exists.
2022-09-08 17:39:32 +03:00
Ronan Lamy b470459987 fs: simplify return values of _get_fs_pair_2() 2022-09-08 17:39:32 +03:00
Ronan Lamy 81a010674e fs: avoid costly redundant dvcignore check when calling ._info() from .ls() 2022-09-08 17:39:32 +03:00
Ronan Lamy d946a1328e fs: Extract ._info() from .info()
This avoids unnecessarily recomputing dvc_parts when calling .info()
from .ls()
2022-09-08 17:39:32 +03:00
Ronan Lamy ad7d39da20 fs: chop up ._get_fs_pair() 2022-09-08 17:39:32 +03:00
Saugat Pachhai (सौगात) 8432de5980 metadata: add support for dvc.yaml file 2022-09-08 15:10:33 +03:00
Saugat Pachhai (सौगात) c73764156e metadata: support custom metadata in .dvc files
This adds support for custom metadata in outputs under `meta` key.
Also adds `--meta` flag to `add`/`import`/`import-url` that supports
`key=value` values.
2022-09-08 14:10:35 +03:00
skshetry df60df5242 add metadata fields: label, type to data (#8232)
gto like metadata fields: labels and type
2022-09-08 16:33:47 +05:45
dependabot[bot] 504485ed6e build(deps-dev): Bump pylint from 2.15.0 to 2.15.2 (#8268)
Bumps [pylint](https://github.com/PyCQA/pylint) from 2.15.0 to 2.15.2.
- [Release notes](https://github.com/PyCQA/pylint/releases)
- [Commits](https://github.com/PyCQA/pylint/compare/v2.15.0...v2.15.2)

---
updated-dependencies:
- dependency-name: pylint
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2022-09-08 10:57:12 +05:45
dependabot[bot] 1e989bde2c build(deps): Bump scmrepo from 0.1.0 to 0.1.1 (#8269)
Bumps [scmrepo](https://github.com/iterative/scmrepo) from 0.1.0 to 0.1.1.
- [Release notes](https://github.com/iterative/scmrepo/releases)
- [Commits](https://github.com/iterative/scmrepo/compare/0.1.0...0.1.1)

---
updated-dependencies:
- dependency-name: scmrepo
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2022-09-08 10:56:53 +05:45
Ruslan Kuprieiev 7e2248bbe5 deps: bump dvc-data to 0.7.1 2022-09-07 23:07:35 +03:00
Daniele Trifirò a2d80b2403 silence flake8 errors (abstract class with no abstract method) 2022-09-07 21:51:33 +03:00
Daniele Trifirò 76e7c76ae5 data status: fix for scmrepo 0.1.0 2022-09-07 21:48:53 +03:00
Ruslan Kuprieiev 6cada6dc12 dvc: cloud versioning POC 2022-09-07 21:43:34 +03:00
Ruslan Kuprieiev 89d4461908 deps: temporarily limit dulwich to <0.20.46
Looks like the new release broke some data status logic.
2022-09-07 02:56:14 +03:00
Ruslan Kuprieiev a124d7e866 deps: bump dvc-data to 0.6.3 2022-09-07 02:23:29 +03:00
Ruslan Kuprieiev 628be2ae49 deps: bump dvc-data to 0.6.1 2022-09-06 20:30:20 +03:00
dependabot[bot] 7a71e06946 build(deps): Bump dvc-render from 0.0.9 to 0.0.10
Bumps [dvc-render](https://github.com/iterative/dvc-render) from 0.0.9 to 0.0.10.
- [Release notes](https://github.com/iterative/dvc-render/releases)
- [Commits](https://github.com/iterative/dvc-render/compare/0.0.9...0.0.10)

---
updated-dependencies:
- dependency-name: dvc-render
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-09-06 17:12:36 +02:00
dependabot[bot] 91e54d8c27 build(deps): Bump dvc-data from 0.4.0 to 0.5.3 2022-09-06 17:17:21 +03:00
skshetry 071b2b8f81 add support for foreach target (#8210)
add general support for foreach target
2022-09-06 06:39:37 +05:45
skshetry 0b2b59a601 dvc.yaml: preserve outputs' desc on rewrites/updates to the stage (#8247)
preserve outputs' desc on rewrites/updates to the stage

We were not loading `desc` of the output, due to which we were not preserving the desc field over rewrites. Note that the rewrite only happens in select commands for `dvc.yaml`: `freeze`/`unfreeze`/`run`/`stage-add`, so we did not notice this before.
2022-09-05 18:49:39 +05:45
dependabot[bot] 65dc1cd08f build(deps-dev): Bump pytest from 7.1.2 to 7.1.3
Bumps [pytest](https://github.com/pytest-dev/pytest) from 7.1.2 to 7.1.3.
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest/compare/7.1.2...7.1.3)

---
updated-dependencies:
- dependency-name: pytest
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-09-03 02:04:01 +03:00
dependabot[bot] 1b103297b7 build(deps-dev): Bump dvc-azure from 2.20.0 to 2.20.2
Bumps [dvc-azure](https://github.com/iterative/dvc-azure) from 2.20.0 to 2.20.2.
- [Release notes](https://github.com/iterative/dvc-azure/releases)
- [Commits](https://github.com/iterative/dvc-azure/compare/2.20.0...2.20.2)

---
updated-dependencies:
- dependency-name: dvc-azure
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-09-03 02:03:46 +03:00
John Henning 887c73b3c6 adjusted formatting for dvc-hdfs 2022-09-02 23:04:59 +03:00
Peter Rowlands 660c17f654 output: save version_id meta 2022-09-01 19:36:53 +03:00
skshetry 49da2eef02 tests: set celery ping_task_timeout 3x the default (#8221)
tests: set celery ping_timeout 3x the default
2022-09-01 16:48:19 +05:45
Ruslan Kuprieiev aff65d42bb deps: bump dvc-azure and dvc-s3 to 2.20.0 2022-09-01 13:00:47 +03:00
skshetry 8968405770 data status: fix path for committed changes in Windows (#8220)
The path we get from GitFileSystem is posixpath, even on Windows. We need to
convert that posixpath to os.path here.
2022-09-01 10:02:08 +05:45
dependabot[bot] b6e8ba6758 build(deps-dev): Bump pylint from 2.14.5 to 2.15.0
Bumps [pylint](https://github.com/PyCQA/pylint) from 2.14.5 to 2.15.0.
- [Release notes](https://github.com/PyCQA/pylint/releases)
- [Commits](https://github.com/PyCQA/pylint/compare/v2.14.5...v2.15.0)

---
updated-dependencies:
- dependency-name: pylint
  dependency-type: direct:development
  update-type: version-update:semver-minor
...
2022-09-01 10:42:16 +08:00
Ruslan Kuprieiev e307a62dc0 deps: bump dvc-data to 0.4.0 2022-09-01 02:59:24 +03:00
Saugat Pachhai (सौगात) 639eeed43b skip tests that depend on hydra.compose in 3.11 2022-08-31 17:24:09 +02:00
David de la Iglesia Castro 91f12395f1 exp run: Support composing and dumping Hydra config.
The feature will be used depending on whether `config.hydra.enabled` is True or False.

Uses `hydra.initialize_config_dir` and `hydra.compose` (from https://hydra.cc/docs/advanced/compose_api/) to build the config and dump it to `params.yaml`. The content of the output file will be overwritten.

`config.hydra.config_dir` and `config.hydra.config_name` can be used to customize the values passed to `hydra.initialize_config_dir` and `hydra.compose`.

Can be combined with `--set-param` overrides.

Closes #8082
2022-08-31 17:24:09 +02:00
Ruslan Kuprieiev e7daeb1c3e deps: bump dvc-data to 0.3.0 2022-08-30 22:46:27 +03:00
Saugat Pachhai (सौगात) d3569035c8 output.get_obj: catch ObjectCorruptedError 2022-08-30 21:31:33 +03:00
David de la Iglesia Castro daee52e176 info: skip missing subprojects 2022-08-30 20:15:41 +03:00
skshetry a8415b01d0 data status: fix quoting on command hints for untracked files (#8211)
data status: fix quoting on command hints
2022-08-30 22:51:39 +05:45
Daniele Trifirò 77f56090ff do not checkout partials imports on fetch 2022-08-30 20:05:09 +03:00
Dave Berenbaum 1d3102f29b data status: update hints to include fetch and checkout (#8209) 2022-08-30 22:05:32 +05:45
skshetry a0cbcaa3c8 Delete CODEOWNERS 2022-08-30 13:12:57 +05:45
David de la Iglesia Castro ab780879d1 info: Include subprojects. 2022-08-30 09:22:39 +02:00
skshetry bfad82a2e3 data status: remove --withdirs, show unknowns in CLI (#8189)
* data status: remove --withdirs, show unknowns in CLI

* data status: only consider unknown from newer object during diff
2022-08-30 12:11:02 +05:45
skshetry e5eec59cb8 test on 3.11 (#8196)
We don't have aiohttp support yet, due to which we have to install
without cythonized extension.

Similarly, there has been some changes in how dataclasses disallows some
mutable arguments to be set as a class property, due to which
`hydra.conf` fails to import in 3.11.

See https://github.com/python/cpython/pull/29867. For now, I have
patched the module and avoid importing as a pytest-plugin.

dvc-hdfs/pyarrow is not there yet, we'll usually see a release 2-3
months after official reelase.

dvc-hdfs is skipped in 3.11 in extras_requires. `--set-params` will
return a nice error message if hydra cannot be imported in 3.11. I
decided to only patch that in tests.
2022-08-29 19:58:17 +05:45
Paweł Redzyński 2a4b83060e plots: support dirs in top level definitions
Fixes: #7914
2022-08-29 10:51:16 +02:00
David de la Iglesia Castro 9e2ebe9fcc resolve_rev: raise DvcException on empty repo. 2022-08-29 01:50:14 +03:00
David de la Iglesia Castro 2cef130191 repo: Handle no commits for exp show and plots diff.
Make it consistent with all the other commands that use `brancher` (i.e. `dvc diff`, `metrics diff`, `params diff`)

Closes #8163
2022-08-29 01:50:14 +03:00
David de la Iglesia Castro 17b9b1571e api: Add details forparams_show stages syntax.
Explain `stages` syntax for cases where the api is used from a directory different to the one the `dvc.yam` is located.
2022-08-29 01:49:38 +03:00
skshetry 37c8ef3406 Update dvc/commands/plots.py 2022-08-29 01:46:47 +03:00
b7aea414e6 plots templates: change ui to not dump to file
Update dvc/commands/plots.py

Co-authored-by: David de la Iglesia Castro <[email protected]>

Update tests/unit/command/test_plots.py

Co-authored-by: David de la Iglesia Castro <[email protected]>

Update dvc/commands/plots.py

Co-authored-by: Paweł Redzyński <[email protected]>

fixed test
2022-08-29 01:46:47 +03:00
pre-commit-ci[bot] 126a64618b [pre-commit.ci] auto fixes from pre-commit.com hooks
for more information, see https://pre-commit.ci
2022-08-29 01:43:43 +03:00
Alex Hall 8bdf9b1138 Better error message when using remove on file instead of dvc file 2022-08-29 01:43:43 +03:00
Ruslan Kuprieiev 9cb242c8a5 deps: bump dvc-http and dvc-gs 2022-08-28 23:13:18 +03:00
Ruslan Kuprieiev 11802426de pyinstaller: don't forget dvc_* plugins
Fixes #8194
2022-08-28 21:05:25 +03:00
dependabot[bot] b376044c45 build(deps): Bump dvc-data from 0.1.23 to 0.2.0
Bumps [dvc-data](https://github.com/iterative/dvc-data) from 0.1.23 to 0.2.0.
- [Release notes](https://github.com/iterative/dvc-data/releases)
- [Commits](https://github.com/iterative/dvc-data/compare/0.1.23...0.2.0)

---
updated-dependencies:
- dependency-name: dvc-data
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-08-27 03:18:20 +03:00
David de la Iglesia Castro 7b3b4b373b api: Fix params_show for untracked targets.
If an untracked target is provided alongside `stages` or `deps`, don't load the parameters from the target and raise no params found instead.

Closes #8161
2022-08-26 12:00:45 +02:00
Peter Rowlands (변기호) 512bfc4305 tests: mark exp queue func tests xfail (#8186) 2022-08-25 21:04:05 +05:45
skshetry 54ee8c0d77 data status: make untracked files to be relative paths (#8184) 2022-08-25 19:29:43 +05:45
skshetry 063eb6904d data status: test cleanup and improvements (#8185) 2022-08-25 18:50:46 +05:45
Ruslan Kuprieiev 3e183d62ed deps: bump dvc-* plugins to 2.19.0
These are the same packages but with correct versions to sync up with existing packages that we generated in conda over the years.
2022-08-25 14:44:13 +03:00
David de la Iglesia Castro e815bbe211 metrics: show: Fix show from subdir.
This was a regression introduced in #7712.
Calling `repo.metrics.show` from a subdir stopped returning metrics because `fs.isfile(metric)` check returned false.
2022-08-25 13:02:22 +02:00
Saugat Pachhai (सौगात) 2374c72105 status: add unknown state 2022-08-25 13:23:18 +03:00
Saugat Pachhai (सौगात) 5cf1421c61 fix tests 2022-08-25 13:23:18 +03:00
skshetry a6a2feea62 Update setup.cfg 2022-08-25 13:23:18 +03:00
Saugat Pachhai (सौगात) 6c1d00c2d9 fix diff when no object exists by falling back to shallow_diff 2022-08-25 13:23:18 +03:00
Saugat Pachhai (सौगात) f72456f67c add shallow_diff 2022-08-25 13:23:18 +03:00
skshetry 2c556f58d3 data status: fix not-in-cache hint (#8181)
See https://github.com/iterative/dvc.org/pull/3812\#discussion_r936625617.
2022-08-25 15:39:59 +05:45
Ruslan Kuprieiev 460d08057c Create hook-fsspec.py 2022-08-24 23:39:46 +03:00
Ronan Lamy cc6deb24c8 fs: remove obsolete special cases 2022-08-23 23:20:42 +03:00
Ronan Lamy e681030c72 fs: simplify filtering out dvcfiles 2022-08-23 23:20:42 +03:00
Ronan Lamy 7a51548214 fs: Add fast path for the no subrepo case in _get_fs_pair() 2022-08-23 23:20:42 +03:00
Ronan Lamy 8e99fd0091 ls: Use fs.walk(..., detail=True) instead of separate call to fs.info() 2022-08-23 23:20:42 +03:00
Ronan Lamy 7e5a586f85 fs: Remove redundant .isdvc() check
fs.walk(..., dvc_only=True) already outputs dvc objects only, so
fs.isdvc(path, recursive=True) is always True.
2022-08-23 23:20:42 +03:00
Ronan Lamy c76a84b7b1 fs: remove one call to ._get_key() in _DvcFS._get_fs_pair() 2022-08-23 23:20:42 +03:00
Daniele Trifirò 26008f1559 import-url/update: add --no-download flag
add --no-download flag to dvc import-url/dvc update to only create/update .dvc
files without downloading the associated data.

Created .dvc files can be fetched using `dvc pull` or can be
updated using `dvc update --no-download`.
2022-08-23 23:07:01 +03:00
Daniele Trifirò 92d680ff94 tests: fix typo in test name 2022-08-23 23:07:01 +03:00
Daniele Trifirò c69c46d08c fix error message on fetch/pull/checkout failure 2022-08-23 23:07:01 +03:00
skshetry 6477ade557 build: skip install fpm and ruby on Windows (#8169) 2022-08-23 18:02:47 +05:45
skshetry 78dd045d29 ci: drop __token__, it's the default (#8157) 2022-08-22 08:40:31 +05:45
skshetry 2ddbbdf5a4 ci: refactor binary executable building workflow (#8156)
This now uses the matrix to build executables from same jobs definition.
2022-08-22 08:38:58 +05:45
skshetry 17a565023b build: bump ruby to 2.6 (#8154) 2022-08-20 23:32:23 +05:45
skshetry b5d5728bf8 deps: bump dvc-data to 0.1.22 and dvc-s3 to 0.0.2 (#8153)
* deps: bump dvc-data to 0.1.22

* deps: bump dvc-s3 to 0.0.2
2022-08-20 22:59:40 +05:45
skshetry 055641a51e deps: bump dvc-data to 0.1.21 (#8147) 2022-08-19 13:22:56 +05:45
Ruslan Kuprieiev fc509d4e4a Delete hook-googleapiclient.model.py
This is already provided by pyinstaller's standard hooks https://github.com/pyinstaller/pyinstaller-hooks-contrib/blob/master/src/_pyinstaller_hooks_contrib/hooks/stdhooks/hook-googleapiclient.model.py
2022-08-18 21:07:57 +03:00
Ruslan Kuprieiev a67fea2235 doctor: ignore missing plugins 2022-08-18 21:02:41 +03:00
skshetry f062b52e05 Add python version label to the readme (#8146) 2022-08-18 18:34:58 +05:45
Paweł Redzyński 25166f3e02 plots: show-vega: adjust renderers before show vega
Fixes: iterative/cml#1112
2022-08-18 12:52:52 +02:00
Ruslan Kuprieiev a79ea15827 tests: webhdfs: fix linter 2022-08-18 12:43:12 +03:00
Ruslan Kuprieiev 8db9a2f70f deps: bump dvc-data to 0.1.19 2022-08-18 12:43:12 +03:00
David de la Iglesia Castro ff2f2e433f pyinstaller: Restrict to 5.0
5.2 didn't fix https://github.com/iterative/dvc/issues/7949
2022-08-18 12:42:11 +03:00
Ruslan Kuprieiev 3fc9f323a7 fs: don't import SSHFileSystem 2022-08-18 00:23:40 +03:00
Ruslan Kuprieiev bf0aa5e8aa repo: data: ignore pylint false-positives 2022-08-17 23:02:22 +03:00
Ruslan Kuprieiev 3b3866323e deps: bump dvc-data to 0.1.18 2022-08-17 23:02:22 +03:00
Ruslan Kuprieiev 3c3cbee7fd deps: bump dvc-http to 0.0.2 2022-08-16 22:31:05 +03:00
Ruslan Kuprieiev 4a95020155 gs: add endpointurl 2022-08-14 13:39:03 +03:00
Ruslan Kuprieiev 3a429a869e tests: lockfile: use fs_path 2022-08-13 23:09:21 +03:00
Ruslan Kuprieiev 99465b25b5 deps: bump dvc-data to 0.1.17 2022-08-13 22:43:46 +03:00
Ruslan Kuprieiev fcdad4d229 deps: bump dvc-data to 0.1.16 2022-08-13 22:25:24 +03:00
Ruslan Kuprieiev 2e8b463795 deps: bump dvc-data 2022-08-12 11:58:44 +03:00
Ivan Shcheklein 206e00ccbe guard rwlock file to prevent not locked repo edits 2022-08-11 15:54:42 +03:00
Peter Rowlands f13443477d exp run: account for repo root when staging git-deps 2022-08-11 13:48:28 +09:00
Dave Berenbaum 9837747eef exp run: ui tweak (#8124) 2022-08-11 09:14:43 +05:45
dependabot[bot] cf5dfc517a build(deps-dev): Bump filelock from 3.7.1 to 3.8.0 (#8125)
Bumps [filelock](https://github.com/tox-dev/py-filelock) from 3.7.1 to 3.8.0.
- [Release notes](https://github.com/tox-dev/py-filelock/releases)
- [Changelog](https://github.com/tox-dev/py-filelock/blob/main/docs/changelog.rst)
- [Commits](https://github.com/tox-dev/py-filelock/compare/3.7.1...3.8.0)

---
updated-dependencies:
- dependency-name: filelock
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2022-08-11 09:14:12 +05:45
dependabot[bot] c134d4ab8e build(deps): Bump dvc-data from 0.1.13 to 0.1.14 (#8117)
Bumps [dvc-data](https://github.com/iterative/dvc-data) from 0.1.13 to 0.1.14.
- [Release notes](https://github.com/iterative/dvc-data/releases)
- [Commits](https://github.com/iterative/dvc-data/compare/0.1.13...0.1.14)

---
updated-dependencies:
- dependency-name: dvc-data
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2022-08-10 09:17:12 +05:45
skshetry 7a0b3e9377 Update tests/func/experiments/test_queue.py 2022-08-09 17:50:48 +08:00
karajan1001 d6f8e5a507 Add flaky to a queue related test.
This is a flaky, the queue tasks status might remain "Running" even if
it had already been completed, beside sometimes I also noticed it raise
a pytest fixture error.
2022-08-09 17:50:48 +08:00
Alex HallandDavid de la Iglesia Castro 2ca1d6c7c1 refactor: extract load_path function from common code using LOADERS (#7983)
Following up on https://github.com/iterative/dvc/pull/7965#discussion_r912684074

Co-authored-by: David de la Iglesia Castro <[email protected]>
2022-08-09 09:09:43 +00:00
Ivan Shcheklein f7fbac1eed stage add: fix hint message consistency (#8112) 2022-08-09 11:18:37 +05:45
skshetry 7c1e339650 data status: handle path joining properly for tree leaves/items (#8107) 2022-08-09 09:34:15 +05:45
Ivan Shcheklein b7c0c41262 lock test name fix 2022-08-09 00:47:04 +03:00
karajan1001 9180a718c1 queue status: show final experiment name
fix: #8059

1. showing final experiment name in `queue status` for successful tasks.
2. Add a unit test for `celery_queue.status`
2022-08-08 15:49:51 +09:00
karajan1001 306456d453 queue status: ERROR: Invalid experiment
fix: #8014
> ERROR: Invalid experiment '{entry.stash_rev[:7]}'.

This happens when the queue task failed from a scm error.

{"exc_type": "GitMergeError", "exc_message": ["Cannot fast-forward HEAD
to '05100047a341f2fa4a02421289d48f84d8c45e86'"], "exc_module": "dvc.scm"}.

And the failed task neither create a infofile nor create a fail_stash.

1. Didn't raise DvcException if no infofile found for failed tasks.
   (success tasks still raise it)
2. Add a new unit test for this.
2022-08-08 15:07:11 +09:00
Ivan Shcheklein 95421a5605 fix logic for unlock on unlocked lock calls 2022-08-08 14:25:10 +09:00
David de la Iglesia Castro 31635b8312 exp run: Use hydra for parsing --set-param.
- Overriding a config value : foo.bar=value
- Appending a config value : +foo.bar=value
- Appending or overriding a config value : ++foo.bar=value
- Removing a config value : ~foo.bar, ~foo.bar=value

See https://hydra.cc/docs/advanced/override_grammar/basic/#modifying-the-config-object

---

Breaking changes:

To modify a list, `foo[0]=bar` must now be passed as `foo.0=bar`.

Modifying a nested list inside a dictionary is not supported by omegaconf.

---

Closes #4883
Closes #5868
Closes #6129
2022-08-05 17:53:24 +02:00
David de la Iglesia Castro 45ac64ddde api: Fix params_show when stage has no params
Also fix when `deps=True` and no params in the entire pipeline.

Closes #8064
2022-08-05 16:26:19 +03:00
Sami Abdul-Wahid c7b22b467c Upgrade from toml to tomlkit library (#7468)
* Upgrade from toml to tomlkit library
2022-08-05 18:58:22 +05:45
karajan1001 ae83e3c787 Now exp remove can clean up failed tasks and associated successful tasks
fix: #8018
fix: #8071

1. Add one line to make `exp remove` can remove failed tasks, and will
   also delete associated successful tasks
2. Add a new unit test for this behaviour.
3. Solve the unstable test_queue problem.
2022-08-05 16:09:51 +09:00
karajan1001andPeter Rowlands f68c4e9a4b Refactor dvc.repo.experiment.remove to make matching exp by name also
return its queue entry info.

Some review changes.

Co-authored-by: Peter Rowlands (변기호) <[email protected]>
2022-08-05 16:09:51 +09:00
karajan1001 2182c4508d Make exp remove flags and arguments mutually exclusive.
1. Current behavior didn't follow the either or description.
2. Make the underlying logic more clear.
2022-08-05 16:09:51 +09:00
karajan1001 eaab253e2b Refactor dvc.repo.experiments.queue.remove.py
Make a better API for other place to call.
2022-08-05 16:09:51 +09:00
karajan1001 905c416ffc Decouple queue clear and remove commands 2022-08-05 16:09:51 +09:00
karajan1001 a6063307b5 Replace the _clear_queue function with celery_queue.clear 2022-08-05 16:09:51 +09:00
Ruslan Kuprieiev 704191b15a output: resolve relative to stage.wdir only on the same fs
Leftover from https://github.com/iterative/dvc/pull/8091
2022-08-04 19:25:31 +03:00
dependabot[bot] 5625a94365 build(deps): Bump dvc-data from 0.1.12 to 0.1.13
Bumps [dvc-data](https://github.com/iterative/dvc-data) from 0.1.12 to 0.1.13.
- [Release notes](https://github.com/iterative/dvc-data/releases)
- [Commits](https://github.com/iterative/dvc-data/compare/0.1.12...0.1.13)

---
updated-dependencies:
- dependency-name: dvc-data
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-08-04 20:26:18 +05:45
dependabot[bot] 634894d3b1 build(deps): Bump dvc-data from 0.1.11 to 0.1.12
Bumps [dvc-data](https://github.com/iterative/dvc-data) from 0.1.11 to 0.1.12.
- [Release notes](https://github.com/iterative/dvc-data/releases)
- [Commits](https://github.com/iterative/dvc-data/compare/0.1.11...0.1.12)

---
updated-dependencies:
- dependency-name: dvc-data
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-08-04 13:22:48 +03:00
Ruslan Kuprieiev 0ce4e769f1 repo: make lock/rwlock kinda work on non local fs 2022-08-03 21:10:28 +03:00
Ruslan Kuprieiev 2c3655f7ff repo: use fs.makedirs instead of os.makedirs 2022-08-03 21:10:28 +03:00
Ruslan Kuprieiev 52bdd90840 repo: support basic workflow on s3fs/adlfs/etc 2022-08-03 21:10:28 +03:00
Ruslan Kuprieiev fcc7240617 odb: use odb.path instead of odb.cache_dir 2022-08-03 21:10:28 +03:00
Ruslan Kuprieiev ecd98bdf7d odbmgr: separate repo and local odbs 2022-08-03 21:10:28 +03:00
Ruslan Kuprieiev e525d9bedb deps: bump dvc-data to 0.1.11 2022-08-03 21:10:28 +03:00
Yury 27b2a5cd6d revert logger to lazy formatting 2022-08-03 13:18:10 +03:00
Peter Rowlands 8518fe639f dvc-task: update to 0.1.2 2022-08-03 16:44:36 +09:00
Ruslan Kuprieiev 496599518a deps: bump dvc-data to 0.1.9 2022-08-02 23:57:34 +03:00
Yury 116ad512e4 plots: remove legacy code from verify_metrics
Fixes: #7988
2022-08-02 14:38:29 +09:00
Ruslan Kuprieiev 6a7b55fdf7 datafs: use dvc-data's datafs 2022-08-02 03:13:06 +03:00
Paweł Redzyński ed62ddb373 cmd: plots: update messaging
Related: iterative/dvc.org#3691
2022-08-01 17:29:13 +02:00
Peter Rowlands 38b1a41f2b build: add pyinstaller hooks for dvc-task and celery 2022-08-01 12:26:53 +03:00
skshetry 6f0736142b deps: bump dvc-data to 0.1.6 2022-07-28 21:45:23 +05:45
Gao 737d7cda4b queue: missing f format for the error message. 2022-07-28 21:15:51 +08:00
dberenbaum 75745a70b4 readme: add exps to quickstart 2022-07-28 10:16:32 +02:00
Ivan Shcheklein 9ff18502b6 add gdrive remote profile field to config 2022-07-27 23:29:18 +03:00
Paweł Redzyński 44a4fb59a7 plots: account for wdir in stage plots
Fixes: #8003
2022-07-26 13:59:24 +02:00
Paweł Redzyński 6543683c0c project: update dvc render and dvclive test dependencies 2022-07-26 13:40:59 +02:00
pre-commit-ci[bot] 8fee26c3d2 [pre-commit.ci] auto fixes from pre-commit.com hooks
for more information, see https://pre-commit.ci
2022-07-26 15:02:09 +05:45
Gaoandskshetry 7c8994b538 Update dvc/repo/experiments/queue/workspace.py
Co-authored-by: skshetry <[email protected]>
2022-07-26 15:02:09 +05:45
karajan1001 9dfe88e2b1 exp run: workspace status wrong
fix: #8045
2022-07-26 15:02:09 +05:45
Saugat Pachhai (सौगात) d0eda1d538 data status: add spinners during diff 2022-07-25 19:32:19 +05:45
Saugat Pachhai (सौगात) 896acedb07 data status: optimize printing status list
`--untracked-files` and `--unchanged` coupled with `--granular`
puts a lot of stress on `show_status`. Currently, with those options,
dvc spends ~26s on `_show_status` function.

Unhappy with the above result, I looked into improving the situation with
`console.out`. It did reduce that to 9s but it still felt like a lot.

Then I dropped to good old colorama, which dropped to 3s(term)/1.24(redirected).
I tested with buffering output which dropped this further to
~600ms(term)/~100ms(redirected).

This may seem like premature optimization, but this was preventing me
from figuring out perf issues in granular outputs, and I believe the
user should not be penalize for using feature that we already offer.
2022-07-25 17:47:23 +05:45
Saugat Pachhai (सौगात) fd7dcae8aa cli/log: handle SIGPIPE errors
`dvc <command> | head` for example could fail with SIGPIPE and
would print a traceback with BrokenPipeError exception. Now we
redirect do /dev/null in case of error as suggested in Python's
docs: https://docs.python.org/3/library/signal.html\#note-on-sigpipe.
2022-07-25 16:38:09 +05:45
karajan1001 a4763593c7 queue: clean local EXEC_HEAD & EXEC_BASELINE after we run exp with queue.
fix: #8031

Currently when we use tmp directory to run a experiment, we set
`EXEC_HEAD` , `EXEC_BASELINE` and `EXEC_MERGE` heads locally but forget
to remove it. This cause some problem when we use `exp show`

1. Clean `EXEC_HEAD` , `EXEC_BASELINE` and `EXEC_MERGE` after we pushed
   them to tmp_dir
2. Add a unit test for it.

Co-authored-by:
2022-07-25 18:17:12 +08:00
dberenbaum cc2d2495c0 readme: link to docs for related tech 2022-07-22 23:31:59 +02:00
Jorge Orpinel 9b30ef474a exp branch: update -h stdout
per https://github.com/iterative/dvc.org/pull/3780#pullrequestreview-1043024878
2022-07-22 23:30:14 +03:00
David de la Iglesia Castro f95e6340e0 utils: remove dead code 2022-07-22 16:30:51 +02:00
Saugat Pachhai (सौगात) c3ac4f84bf data status: fix untracked files output for subdir 2022-07-22 16:29:04 +03:00
Saugat Pachhai (सौगात) 61729ff66a use M fixture for concise tests 2022-07-22 16:29:04 +03:00
Saugat Pachhai (सौगात) 3dfcb82e5c add tests for data:status command 2022-07-22 16:29:04 +03:00
Saugat Pachhai (सौगात) 340a158595 introduce new dvc data status command 2022-07-22 16:29:04 +03:00
Ruslan Kuprieiev 4b965c3f9f fs: gdrive: add gdrive_acknowledge_abuse
Fixes https://github.com/iterative/dvc/issues/7832
2022-07-22 14:58:45 +03:00
dependabot[bot] b5220129e7 build(deps): Bump pyinstaller from 5.0 to 5.2
Bumps [pyinstaller](https://github.com/pyinstaller/pyinstaller) from 5.0 to 5.2.
- [Release notes](https://github.com/pyinstaller/pyinstaller/releases)
- [Changelog](https://github.com/pyinstaller/pyinstaller/blob/develop/doc/CHANGES.rst)
- [Commits](https://github.com/pyinstaller/pyinstaller/compare/v5.0...v5.2)

---
updated-dependencies:
- dependency-name: pyinstaller
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-07-22 14:56:13 +03:00
Ruslan Kuprieiev 7a4886386f deps: bump dvc-data to 0.1.4 2022-07-21 22:53:26 +03:00
Ruslan Kuprieiev ae143505e4 deps: bump dvc-data to 0.1.3 2022-07-21 19:44:38 +03:00
Ruslan Kuprieiev b9b2e5bbd9 Delete test_gdrive.py
Moved to dvc-gdrive.
2022-07-21 19:34:04 +03:00
Ruslan Kuprieiev 66420439c9 deps: bump dvc-data to 0.1.2 2022-07-21 19:16:21 +03:00
David de la Iglesia Castro ed1d8e2b8f exp: init: Use persist: true if checkpoint. 2022-07-21 13:21:06 +02:00
dberenbaum 0b07354361 readme: drop table of contents
readme: top-level links in comments
2022-07-21 09:01:17 +02:00
dependabot[bot] fa200c9b4c build(deps-dev): Bump pylint from 2.14.4 to 2.14.5
Bumps [pylint](https://github.com/PyCQA/pylint) from 2.14.4 to 2.14.5.
- [Release notes](https://github.com/PyCQA/pylint/releases)
- [Commits](https://github.com/PyCQA/pylint/compare/v2.14.4...v2.14.5)

---
updated-dependencies:
- dependency-name: pylint
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-07-20 10:04:44 +05:45
dependabot[bot] 1aaf836340 build(deps-dev): bump mypy from 0.961 to 0.971
Bumps [mypy](https://github.com/python/mypy) from 0.961 to 0.971.
- [Release notes](https://github.com/python/mypy/releases)
- [Commits](https://github.com/python/mypy/compare/v0.961...v0.971)

---
updated-dependencies:
- dependency-name: mypy
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-07-20 10:36:20 +08:00
Jorge Orpinel Perez f51e96fe6d Revert "readme: roll back non-vscode changes"
This reverts commit 5482de3582e366b86fb4923ba95e72cc39a2e37e.
2022-07-20 07:16:26 +05:45
Jorge Orpinel Perez afefc0ddc1 readme: add paragraph about dvc exp, add GS links 2022-07-20 07:16:26 +05:45
Jorge Orpinel Perez bd82af2e1e readme: better Studio mention 2022-07-20 07:16:26 +05:45
Jorge Orpinel Perez 34f20bf69f readme: 1 sentence = 1 line formatting 2022-07-20 07:16:26 +05:45
Jorge Orpinel Perez 2c339a7fb3 readme: move How it works after Quick started sections 2022-07-20 07:16:26 +05:45
Jorge Orpinel Perez ec4d61e2b1 readme: improve and reformat How it works 2022-07-20 07:16:26 +05:45
Ruslan Kuprieiev 94eec50d27 deps: bump dvc-data to 0.1.1 2022-07-19 14:55:28 +03:00
Ruslan Kuprieiev dd32ff6206 deps: bump dvc-data to 0.0.31 2022-07-19 04:54:34 +03:00
Ruslan Kuprieiev 52a9c58cc0 deps: bump dvc-data to 0.0.30 2022-07-19 04:36:41 +03:00
Ruslan Kuprieiev 01855b7dcf deps: bump dvc-data to 0.0.28 2022-07-18 21:46:22 +03:00
Ruslan Kuprieiev 38f10884a7 deps: bump dvc-data to 0.0.27 2022-07-18 19:15:02 +03:00
Ruslan Kuprieiev 9e6d2163df deps: bump dvc-data to 0.0.26 2022-07-18 01:03:06 +03:00
skshetry dbfe88510f deps: bump dvc-data to 0.0.24 2022-07-15 22:40:26 +05:45
Alexander Guschin c04eb40f90 Update setup.cfg 2022-07-14 18:12:47 +05:45
David de la Iglesia Castro c2668110b7 gc: Add --rev and --num.
Closes #7695
2022-07-12 20:13:07 +02:00
Peter Rowlands 80272a0770 queue: cleanup flaky tests 2022-07-12 21:39:49 +09:00
Peter Rowlands 5a6e363c16 queue: cleanup help/usage to match docs 2022-07-12 21:39:49 +09:00
Peter Rowlands ed593493df queue start: simply jobs validation 2022-07-12 21:39:49 +09:00
Peter Rowlands 3130a9a75f queue status: use summary style output for worker status 2022-07-12 21:39:49 +09:00
Peter Rowlands eeb516e7d3 queue: disable dvc-machine handling for queue 2022-07-12 21:39:49 +09:00
karajan1001 c0368e1756 Refactor: Move remove_revs from BaseStashQueue to expstash 2022-07-12 21:39:49 +09:00
GaoandPeter Rowlands e19824fd2e Update dvc/repo/experiments/queue/base.py dvc/repo/experiments/queue/remove.py
Co-authored-by: Peter Rowlands (변기호) <[email protected]>
2022-07-12 21:39:49 +09:00
karajan1001 02681f2e65 Rename _all to all_ remove some tricky func test. 2022-07-12 21:39:49 +09:00
karajan1001 b37524603a Queue remove: Can remove successed,failed tasks msgs
Followed from #7592

1. Seperate remove method to a new file.
2. Add queued, failed, processed flags to remove.
3. Add new unit tests for queue status --queue/fail/success
4. Implement methods to remove done tasks.
5. add some new unit and functional test for celery_queue.remove
6. bump into dvc-task version 0.0.13
2022-07-12 21:39:49 +09:00
Peter Rowlands ff3b23c1b6 dvc-task: bump to 0.1.0
- ends requirement to install kombu + dvc-task from source
2022-07-12 21:39:49 +09:00
Peter Rowlands 4e005411fe exp show: use unique executor name for dvc-task & standalone tempdir exps 2022-07-12 21:39:49 +09:00
Peter Rowlands 1f7b802f79 exp show: collect running standalone tempdir experiments 2022-07-12 21:39:49 +09:00
Peter Rowlands 7c2bd340db exp run: update --run-all logs behavior 2022-07-12 21:39:49 +09:00
Peter Rowlands 9e0788aa3a exp run: preserve --temp standalone behavior 2022-07-12 21:39:49 +09:00
Peter Rowlands e1cf62a583 exp queue: add separate standalone/tempdir implementation 2022-07-12 21:39:49 +09:00
Peter Rowlands ce4cee184e exp queue: separate queue implementations into their own modules 2022-07-12 21:39:49 +09:00
Peter Rowlands db52c75221 dvc-task: bump to 0.0.12 2022-07-12 21:39:49 +09:00
karajan1001andPeter Rowlands bd74172633 queue status: add some unit test to increase the coverage
Followed by #7903

Add a new unit test to increase the coverage of test

Co-authored-by: Peter Rowlands (변기호) <[email protected]>
2022-07-12 21:39:49 +09:00
karajan1001 e5b4946309 queue status: some reviewed changes.
1. No `start -j` will only start worker (1,2,3,...,j). Will not start
   j new worker.
2. Distinguish active worker and idle worker.
2022-07-12 21:39:49 +09:00
karajan1001 3918db945a queue status: will show the current worker status
fix: #7950
Currently queue worker status are not show in `queue status` makes it
hard to tell if the worker is still living.

1. add a new method `active_worker` to return the currently running
   worker node name.
2. give every worker a unique name.
3. `queue status` will show how much worker running at present.
2022-07-12 21:39:49 +09:00
karajan1001 25b5d1d522 queue start: give every worker a unique name
Currently, all of our celery workers are called `dvc-exp-worker` and
they will write to the same log path.

We give every single worker a unique name and seperate they logs if
under a debug log level
2022-07-12 21:39:49 +09:00
dberenbaum 164efe089f queue: ui cleanup 2022-07-12 21:39:49 +09:00
karajan1001 4e82eb4978 queue remove: add remove support for short revs(#7840)
fix: #7840

Now queue remove can not accept short rev as name.

1. Refactor the queue entry match in `queue remove`
2. Better output if no queue task found for name.
3. short rev on kill can only be work for rev with lens longer than 4
2022-07-12 21:39:49 +09:00
karajan1001 16bb31a284 queue worker shutdown: disable restore
fix: #7884
The complete task restored back to the queue causing a task duplication.
Might related to a bug from the celery celery/celery#5663

Follow what in https://github.com/celery/celery/issues/5663#issuecomment-734871162
Disabled the restore_at_shutdown
2022-07-12 21:39:49 +09:00
karajan1001 d7a917e2ab queue status: use a short rev to represent tasks
1. use a short rev to represent tasks
2. Add a unit test for the result shown
2022-07-12 21:39:49 +09:00
Peter Rowlands 8dfcb0a36d exp run: update Ctrl+C handling for --temp and --run-all 2022-07-12 21:39:49 +09:00
Peter Rowlands 67cbdf6de8 exp queue: remove dvc queue attach command 2022-07-12 21:39:49 +09:00
Peter Rowlands f12091002f exp queue: add dvc queue logs command 2022-07-12 21:39:49 +09:00
Peter Rowlands 570f4345a0 exp queue: implement queue.logs() support 2022-07-12 21:39:49 +09:00
Peter Rowlands 425d0701c9 exp queue: return completed exps in queue status 2022-07-12 21:39:49 +09:00
Peter Rowlands 99a11f7056 exp: save failed queue runs in separate stash/reflog 2022-07-12 21:39:49 +09:00
Peter Rowlands 8ab46c1549 exp: simplify shutdown behavior 2022-07-12 21:39:49 +09:00
Peter Rowlands 8b663f2719 exp: use single atomic task instead of chaining 2022-07-12 21:39:49 +09:00
Peter Rowlands c0db513cf0 dvc-task: bump to 0.0.11 2022-07-12 21:39:49 +09:00
Peter Rowlands bf1bc9625d exp: use celery async wait in queue get_result 2022-07-12 21:39:49 +09:00
Peter Rowlands 686c15dab9 exp: use a single chain for all exp tasks
- removes separated scheduling for setup_exp
2022-07-12 21:39:49 +09:00
Peter Rowlands 10aa833f80 dvc-task: bump to 0.0.10 2022-07-12 21:39:49 +09:00
Peter Rowlands 9f5af04963 exp: update tests for match_queue_entry refactor 2022-07-12 21:39:49 +09:00
Peter Rowlands ac5d72967a dvc-task: bump to 0.0.9 2022-07-12 21:39:49 +09:00
karajan1001 bcc2f3b389 Reorganized get_queue_entry_by_names 2022-07-12 21:39:49 +09:00
karajan1001 3d0ee0d202 exp queue: monitor queue status (#7590)
fix: #7590
1. Add two new command `queue status` and `queue attach`
2. Add unit test for the CLI
3. Make `Running` exps can be found by `get_queue_entry_by_names`
2022-07-12 21:39:49 +09:00
karajan1001 6b8c87b58a Add more unit test and implement a new method
1. Add some more unit test for `celery_queue.kill`
2. Implement `kill` argument for `celery_queue.shutdown`
3. Use dataclass's internal methods instead of `__eq__`
2022-07-12 21:39:49 +09:00
Peter Rowlands fee1d02791 dvc-task: update to 0.0.8 2022-07-12 21:39:49 +09:00
Peter Rowlands d766c01d2d exp: enable late_ack to disable celery prefetch 2022-07-12 21:39:49 +09:00
Peter Rowlands dc56c4c9b0 exp: use full task chain when checking active tasks 2022-07-12 21:39:49 +09:00
Peter Rowlands 7ece26d58a tests: re-enable exp show celery tests 2022-07-12 21:39:49 +09:00
Peter Rowlands f26664a569 exp: re-enable run --run-all with celery queue 2022-07-12 21:39:49 +09:00
Peter Rowlands 4b0c65093a tests: use pytest-celery for exp tests 2022-07-12 21:39:49 +09:00
karajan1001 12fc8c4e7d exp queue: Add two command queue start and stop (#7589)
fix: #7589

1. Add two sub-command `dvc queue start` and `dvc queue stop`
2. Add a unit test to test them
2022-07-12 21:39:49 +09:00
karajan1001andPeter Rowlands a6cb4eb72e exp queue: remove queued experiments(#7591)
fix: #7591
1. Add a new command `dvc queue`
2. Add two sub-command `dvc queue remove` and `dvc queue kill`
3. Add a unit test to test them

Co-authored-by: Peter Rowlands (변기호) <[email protected]>
2022-07-12 21:39:49 +09:00
karajan1001 4df5a1321d exp: implement internal queue.kill support(#7587)
fix: #7587
1. Add implement kill method for local queue class
2. Add a test to make sure the following job will be success after the
   original job was killed.
3. Some refactoring work on `exp remove`
2022-07-12 21:39:49 +09:00
Peter Rowlands 22deca3a6a exp: use celery threadpool worker instead of prefork 2022-07-12 21:39:49 +09:00
Peter Rowlands dc4292c602 exp: implement queue shutdown 2022-07-12 21:39:49 +09:00
Peter Rowlands 56f90eb3c9 exp: add test_queue unit test helper for celery queue 2022-07-12 21:39:49 +09:00
Peter Rowlands 1c474e8f30 exp: re-enable most tmpdir/queue tests 2022-07-12 21:39:49 +09:00
Peter Rowlands 24654fe16c exp: use dvc.daemon to run worker on windows 2022-07-12 21:39:49 +09:00
Peter Rowlands 44820e74a3 exp: wait for task collection when getting exp result 2022-07-12 21:39:49 +09:00
Peter Rowlands c16908e9fc exp: use queue remove in gc 2022-07-12 21:39:49 +09:00
Peter Rowlands 33dbdd20af exp: exclude celery stash ref from util iterators 2022-07-12 21:39:49 +09:00
Peter Rowlands 69d7bdd0c0 exp: generate unique worker node names per DVC repo 2022-07-12 21:39:49 +09:00
Peter Rowlands b9f4398826 exp: start migrating info logging to ui 2022-07-12 21:39:49 +09:00
Peter Rowlands a6e7d43668 exp: return exp results for celery runs 2022-07-12 21:39:49 +09:00
Peter Rowlands e2ee69ddb2 dvc-task: update to 0.0.6 2022-07-12 21:39:49 +09:00
Peter Rowlands e8448345f1 exp: follow output on run-all 2022-07-12 21:39:49 +09:00
Peter Rowlands acab008c65 dvc-task: update to 0.0.3 2022-07-12 21:39:49 +09:00
Peter Rowlands 8c74775a4e exp: autostart celery worker 2022-07-12 21:39:49 +09:00
Peter Rowlands 9b31a4b463 exp: support remove from celery queue 2022-07-12 21:39:49 +09:00
Peter Rowlands 9f022c576c dvc-task: update to 0.0.2 2022-07-12 21:39:49 +09:00
Peter Rowlands 316029a9d2 exp: use queue status in exp show 2022-07-12 21:39:49 +09:00
Peter Rowlands 34fe643cee exp: add queue.iter_active for iterating over active exps 2022-07-12 21:39:49 +09:00
Peter Rowlands 6a01cc530e exp: use queue.iter_queued to get queued status in exp show 2022-07-12 21:39:49 +09:00
Peter Rowlands 81475bee09 dvc-task: update to 0.0.1 2022-07-12 21:39:49 +09:00
Peter Rowlands a167dff019 exp: implement celery exp task collection 2022-07-12 21:39:49 +09:00
Peter Rowlands cffd587952 exp: add queue-worker plumbing command 2022-07-12 21:39:49 +09:00
Peter Rowlands a0ae9d3f45 exp: migrate workspace repro to queues 2022-07-12 21:39:49 +09:00
Peter Rowlands e74f8f9e11 exp: add naive workspace queue 2022-07-12 21:39:49 +09:00
Peter Rowlands e45ca1e830 exp: start moving queueing/execution from __init__ 2022-07-12 21:39:49 +09:00
Peter Rowlands 46c734eb7e exp: temporarily mark tmpdir/queue tests as xfail 2022-07-12 21:39:49 +09:00
Peter Rowlands c17f7f03bd exp: initial celery app/task setup 2022-07-12 21:39:49 +09:00
Peter Rowlands 7113568c60 exp: refactor base.py into refs.py and exceptions.py 2022-07-12 21:39:49 +09:00
Peter Rowlands 6143146974 exp: refactor stash handling into separate module 2022-07-12 21:39:49 +09:00
15ada9a1c3 Implement --date to exp gc
1. Implement `--time` to `exp gc`
2. add a unit test for it.
3. Rename `--time` to `--date` and change the warning msg.
4. To get a better msg for `gc` and `exp gc`

Co-authored-by: Peter Rowlands (변기호) <[email protected]>
Co-authored-by: Dave Berenbaum <[email protected]>
2022-07-12 13:53:46 +02:00
karajan1001andPeter Rowlands 217eb13495 Add argument commit_time to gc/brancher and iter_revs
1. Add argument `commit_time` to `gc`/`brancher` and `iter_revs`
2. Add unit test for iter_revs.

Co-authored-by: Peter Rowlands (변기호) <[email protected]>
2022-07-12 13:53:46 +02:00
karajan1001andDave Berenbaum 20d1f7a87d gc: add a new flag --time (#678)
fix #678
1. Add a new flag `--time` to `dvc gc`.
2. Modify the unit test of `dvc gc`
3. Fix an argument checking error and update the error msg.

Co-authored-by: Dave Berenbaum <[email protected]>
2022-07-12 13:53:46 +02:00
karajan1001 9c59689aa7 Gc: Move old unittest gc tests to pytest 2022-07-12 13:53:46 +02:00
David de la Iglesia Castro d47e3c40b8 tests: limit printed durations to 50 2022-07-11 12:36:37 +03:00
Ruslan Kuprieiev d8be68436f deps: bump dvc-data to 0.0.23 2022-07-10 18:10:45 +03:00
Ruslan Kuprieiev f6adc49089 deps: bump dvc-data to 0.0.22 2022-07-10 17:05:26 +03:00
Saugat Pachhai (सौगात) a4c0ae9c73 deps: bump dvc-data, install dvc-data cli deps in dev mode 2022-07-10 18:37:38 +05:45
Ruslan Kuprieiev 8b3020aaf3 deps: bump dvc-data to 0.0.20 2022-07-08 21:37:38 +03:00
Alex Hall 182a22b8f6 checkout: use dvcignore
Fixes #7374
2022-07-07 17:20:30 +08:00
Alex Hall 892b235d0b metrics: support TOML files
Fixes #6402
2022-07-06 14:46:46 +02:00
dependabot[bot] da93e9a76c build(deps-dev): Bump pytest-mock from 3.8.1 to 3.8.2
Bumps [pytest-mock](https://github.com/pytest-dev/pytest-mock) from 3.8.1 to 3.8.2.
- [Release notes](https://github.com/pytest-dev/pytest-mock/releases)
- [Changelog](https://github.com/pytest-dev/pytest-mock/blob/main/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest-mock/compare/v3.8.1...v3.8.2)

---
updated-dependencies:
- dependency-name: pytest-mock
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-07-06 11:38:18 +02:00
Ruslan Kuprieiev bd93d85d47 deps: bump dvc-data 2022-07-05 21:29:34 +03:00
Ruslan Kuprieiev eed6a8483c data_cloud: remove logger check
Per https://github.com/iterative/dvc/pull/7961/files#r913635687
2022-07-05 13:22:23 +03:00
David de la Iglesia Castro 954de0cae4 api: params_show: Raise exception if no params found.
Fixes #7926
2022-07-05 09:18:22 +02:00
David de la Iglesia Castro 909941308b parsing: Support dict unpacking in cmd.
Allow to use dictionaries as values for template interpolation but only inside the `cmd` key.

See tests/func/parsing/test_interpolated_entry.py::test_cmd_dict for detailed syntax.

Add `config.parsing` section for configuring behavior of ambiguous data types
like booleans and lists.
2022-07-05 09:02:15 +02:00
Alex Hall c59f935cc5 Switch uses of %r to %s with quotes to avoid escaped backslashes in logs, especially in windows paths 2022-07-05 02:09:25 +03:00
Alex Hall 03b789e206 logger: use lazy formatting
Fixes #1843
2022-07-05 02:09:25 +03:00
pre-commit-ci[bot] cacc2f14cb [pre-commit.ci] pre-commit autoupdate
updates:
- [github.com/ambv/black: 22.3.0 → 22.6.0](https://github.com/ambv/black/compare/22.3.0...22.6.0)
2022-07-05 00:51:59 +03:00
Ruslan Kuprieiev 0d71194741 dvc: normalize targets before entering brancher
Fixes #7888
2022-07-04 16:34:49 +03:00
dependabot[bot] 683d22c42b build(deps): Bump dvc-data from 0.0.16 to 0.0.18
Bumps [dvc-data](https://github.com/iterative/dvc-data) from 0.0.16 to 0.0.18.
- [Release notes](https://github.com/iterative/dvc-data/releases)
- [Commits](https://github.com/iterative/dvc-data/compare/0.0.16...0.0.18)

---
updated-dependencies:
- dependency-name: dvc-data
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-07-04 14:02:40 +05:45
dberenbaum c687d1bf21 cli: help text for dvc update 2022-07-01 20:42:52 +02:00
Paweł Redzyński fbb98a87d1 plots: introduce flexible plots configuration to dvcfiles
Closes: #7086
2022-07-01 13:17:24 +02:00
Ruslan Kuprieiev f42beb4433 pyinstaller: add note about frozen version 2022-06-30 15:25:24 +03:00
David de la Iglesia Castro de8ab044f8 Downgrade pyinstaller
Per https://github.com/iterative/dvc/issues/7949#issuecomment-1170927010
2022-06-30 15:24:11 +03:00
skshetry 3c76885577 deps: remove setuptools_scm_git_archive
setuptools_scm can now work with git archives, so we don't need this plugin.
2022-06-30 17:00:24 +05:45
dependabot[bot] c347d9f84b build(deps-dev): Bump pytest-mock from 3.7.0 to 3.8.1
Bumps [pytest-mock](https://github.com/pytest-dev/pytest-mock) from 3.7.0 to 3.8.1.
- [Release notes](https://github.com/pytest-dev/pytest-mock/releases)
- [Changelog](https://github.com/pytest-dev/pytest-mock/blob/main/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest-mock/compare/v3.7.0...v3.8.1)

---
updated-dependencies:
- dependency-name: pytest-mock
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-06-30 12:20:05 +05:45
dependabot[bot] efc4787cb0 build(deps-dev): Bump pylint from 2.14.3 to 2.14.4
Bumps [pylint](https://github.com/PyCQA/pylint) from 2.14.3 to 2.14.4.
- [Release notes](https://github.com/PyCQA/pylint/releases)
- [Commits](https://github.com/PyCQA/pylint/compare/v2.14.3...v2.14.4)

---
updated-dependencies:
- dependency-name: pylint
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-06-30 11:09:05 +05:45
skshetry be3ec9dc59 deps: bump dvc-data to 0.0.16 2022-06-29 20:16:19 +05:45
dependabot[bot] 685a2d5579 build(deps): Bump styfle/cancel-workflow-action from 0.9.1 to 0.10.0
Bumps [styfle/cancel-workflow-action](https://github.com/styfle/cancel-workflow-action) from 0.9.1 to 0.10.0.
- [Release notes](https://github.com/styfle/cancel-workflow-action/releases)
- [Commits](https://github.com/styfle/cancel-workflow-action/compare/0.9.1...0.10.0)

---
updated-dependencies:
- dependency-name: styfle/cancel-workflow-action
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-06-28 09:15:05 +02:00
David de la Iglesia Castro c336507e51 render: image_converter: Support slash in revision.
Fixes #7934
2022-06-27 10:53:03 +02:00
Ruslan Kuprieiev d448eb5fc1 setup: bump dvc-data 2022-06-26 19:40:31 +03:00
skshetry 3dcd0107d2 deps: bump dvc-data to 0.0.13 2022-06-23 14:04:16 +05:45
dberenbaum 2773e99afc config: remove core.jobs dead code 2022-06-22 11:36:01 +08:00
Amey Kulkarni 9a1a3a05f5 Merge pull request #7671 from ap-kulkarni/amey/6141
s3fs: Adds support for SSE client keys
2022-06-22 00:54:10 +03:00
Ruslan Kuprieiev 286fab4aab setup: bump dvc-data to 0.0.12 2022-06-22 00:41:29 +03:00
David de la Iglesia Castro 20f69a121e api: Move to sub-package.
Split into sub-modules.

Split tests.
2022-06-21 20:52:19 +03:00
David de la Iglesia Castro b994c529a2 api: Add params_show.
Closes #6507

Uses `repo.params.show` with custom error_handler and postprocess the outputs for more user-friendly structure.

Extend `repo.params.show` to accept `stages` argument to cover the "params of current stage" use case.
2022-06-21 20:52:19 +03:00
David de la Iglesia Castro f106a68424 params.show: Fix deps for stages using same params file. 2022-06-21 20:52:19 +03:00
David de la Iglesia Castro 66c2e8cbd8 repo.collect: Add duplicates option.
Defaults to `False`.
If `True`, multiple `outs` sharing a provided `target_path` will not be filtered.
2022-06-21 20:52:19 +03:00
Yury 735b563ce4 dvc plots: allow for setting output directory via config
Fixes: #7816
2022-06-20 18:12:12 +02:00
Jorge Orpinel Perez 604e0178f7 readme: make VS Code installation into a separate section.
per https://github.com/iterative/dvc/pull/7916#pullrequestreview-1011575851
2022-06-20 16:10:38 +03:00
Jorge Orpinel Perez f210e41d5a readme: single QS, VSC gif in Install
per https://github.com/iterative/dvc/pull/7916#pullrequestreview-1011465782
and https://github.com/iterative/dvc/pull/7916#pullrequestreview-1011465820
2022-06-20 16:10:38 +03:00
Jorge Orpinel e07e79da52 readme: roll back non-vscode changes 2022-06-20 16:10:38 +03:00
Jorge Orpinel Perez 1284842f70 readme: fix link 2022-06-20 16:10:38 +03:00
Jorge Orpinel Perez 0aa063a1e7 readme: add VS Code Extension sction and gif 2022-06-20 16:10:38 +03:00
Jorge OrpinelandDave Berenbaum 87c5cb7ebf Update README.rst
Co-authored-by: Dave Berenbaum <[email protected]>
2022-06-20 16:10:38 +03:00
Jorge Orpinel Perez 59570c08a4 readme: add VS Code to Installation list + formatting 2022-06-20 16:10:38 +03:00
Jorge Orpinel Perez eafe686dd6 readme: Link current Quick start to Cmd Ref 2022-06-20 16:10:38 +03:00
Jorge Orpinel Perez d056d8a4c5 readme: blocks to link to DVC GS 2022-06-20 16:10:38 +03:00
Jorge Orpinel Perez 165d95be56 readme: intro updates (VSCE) 2022-06-20 16:10:38 +03:00
Ruslan Kuprieiev ea1c54f48e setup: bump dvc-data to 0.0.11 2022-06-20 11:55:50 +03:00
Peter Rowlands 31f67cd3de exp apply: preserve untracked files 2022-06-19 22:41:22 -07:00
Peter Rowlands ee87e2b260 scmrepo: bump to 0.0.25 2022-06-19 22:41:22 -07:00
dependabot[bot] ae61143956 build(deps-dev): Bump pylint from 2.14.2 to 2.14.3
Bumps [pylint](https://github.com/PyCQA/pylint) from 2.14.2 to 2.14.3.
- [Release notes](https://github.com/PyCQA/pylint/releases)
- [Commits](https://github.com/PyCQA/pylint/compare/v2.14.2...v2.14.3)

---
updated-dependencies:
- dependency-name: pylint
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-06-20 11:13:19 +05:45
Ruslan Kuprieiev 1253e6cc46 setup: bump dvc-data to 0.0.10 2022-06-19 21:16:08 +03:00
Ruslan Kuprieiev 19f2186c8b setup: bump dvc-data to 0.0.9 2022-06-18 22:34:25 +03:00
Ruslan Kuprieiev 2e21c92c4f dvc: use dvc-data 0.0.8 2022-06-17 22:08:33 +03:00
dberenbaum 4262e26a15 readme: consolidate intro 2022-06-17 10:22:42 +02:00
dependabot[bot] 830c116b4e build(deps-dev): Bump pylint from 2.14.1 to 2.14.2
Bumps [pylint](https://github.com/PyCQA/pylint) from 2.14.1 to 2.14.2.
- [Release notes](https://github.com/PyCQA/pylint/releases)
- [Commits](https://github.com/PyCQA/pylint/compare/v2.14.1...v2.14.2)

---
updated-dependencies:
- dependency-name: pylint
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-06-16 10:32:09 +05:45
David de la Iglesia CastroandPeter Rowlands 1663b97eaa api: open: Raise ValueError if rev is used in wrong mode.
Closes #7405

Co-authored-by: Peter Rowlands (변기호) <[email protected]>
2022-06-15 18:19:27 +02:00
David de la Iglesia Castro 15e10a1d81 api: open: Add docstring and type hints. 2022-06-15 18:19:27 +02:00
Saugat Pachhai (सौगात) 4bc6b5699a quote node names 2022-06-15 12:43:45 +03:00
dependabot[bot] 8e003e5022 build(deps): Update networkx requirement
Updates the requirements on [networkx](https://github.com/networkx/networkx) to permit the latest version.
- [Release notes](https://github.com/networkx/networkx/releases)
- [Commits](https://github.com/networkx/networkx/compare/networkx-2.5...networkx-2.8.4)

---
updated-dependencies:
- dependency-name: networkx
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-06-15 12:43:45 +03:00
Saugat Pachhai (सौगात) af649af462 deps: bump dvc-data to 0.0.6; fix imports 2022-06-14 17:50:57 +05:45
dependabot[bot] 957d8d179b build(deps): Bump dvc-render from 0.0.5 to 0.0.6
Bumps [dvc-render](https://github.com/iterative/dvc-render) from 0.0.5 to 0.0.6.
- [Release notes](https://github.com/iterative/dvc-render/releases)
- [Commits](https://github.com/iterative/dvc-render/compare/v0.0.5...0.0.6)

---
updated-dependencies:
- dependency-name: dvc-render
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-06-14 08:36:27 +05:45
dberenbaum e7b265a178 readme: change vscode to vs code 2022-06-14 00:17:59 +03:00
dberenbaum 422511f66d readme: mention vs code extension 2022-06-14 00:17:59 +03:00
pre-commit-ci[bot] 6826d8ac35 [pre-commit.ci] pre-commit autoupdate
updates:
- [github.com/pre-commit/pre-commit-hooks: v4.2.0 → v4.3.0](https://github.com/pre-commit/pre-commit-hooks/compare/v4.2.0...v4.3.0)
2022-06-14 00:08:50 +03:00
dependabot[bot] bdea9847b5 build(deps-dev): Bump pylint from 2.13.9 to 2.14.1
Bumps [pylint](https://github.com/PyCQA/pylint) from 2.13.9 to 2.14.1.
- [Release notes](https://github.com/PyCQA/pylint/releases)
- [Commits](https://github.com/PyCQA/pylint/compare/v2.13.9...v2.14.1)

---
updated-dependencies:
- dependency-name: pylint
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-06-13 22:15:27 +05:45
Saugat Pachhai (सौगात) 8e6ea87b76 typing: executor: use queue.Queue instead of multiprocessing.Queue 2022-06-13 21:41:54 +05:45
dependabot[bot] 036ac8e7c2 build(deps-dev): Bump mypy from 0.942 to 0.961
Bumps [mypy](https://github.com/python/mypy) from 0.942 to 0.961.
- [Release notes](https://github.com/python/mypy/releases)
- [Commits](https://github.com/python/mypy/compare/v0.942...v0.961)

---
updated-dependencies:
- dependency-name: mypy
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-06-13 21:41:54 +05:45
dependabot[bot] 3306d2789b build(deps-dev): Bump filelock from 3.7.0 to 3.7.1
Bumps [filelock](https://github.com/tox-dev/py-filelock) from 3.7.0 to 3.7.1.
- [Release notes](https://github.com/tox-dev/py-filelock/releases)
- [Changelog](https://github.com/tox-dev/py-filelock/blob/main/docs/changelog.rst)
- [Commits](https://github.com/tox-dev/py-filelock/compare/3.7.0...3.7.1)

---
updated-dependencies:
- dependency-name: filelock
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-06-13 20:39:12 +05:45
dependabot[bot] b094839210 build(deps): Bump actions/setup-python from 3 to 4
Bumps [actions/setup-python](https://github.com/actions/setup-python) from 3 to 4.
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](https://github.com/actions/setup-python/compare/v3...v4)

---
updated-dependencies:
- dependency-name: actions/setup-python
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-06-13 20:28:51 +05:45
Ruslan Kuprieiev b9c04a247a dvc: upgrade to dvc-data 0.0.5 2022-06-13 18:03:53 +05:45
Ruslan Kuprieiev ef689c5593 dvc: upgrade to dvc-objects 0.0.4 2022-06-13 18:03:53 +05:45
Saugat Pachhai (सौगात) 7b16a377e5 deps: bump dvc-data to 0.0.3 2022-06-13 18:03:53 +05:45
Daniele Trifirò 793f97bdd5 fix dvc-objects/data imports 2022-06-13 18:03:53 +05:45
Saugat Pachhai (सौगात) d30dbd50bc run-cache: http: stage cache uploads in http remotes
Currently, there is no way to find run-cache in HTTP remotes.
In the future, we could use directory-listings from supported
webservers to find files.
Temporarily, we are restricting the run-cache uploads. This is a bit
strict, we could have only restricted the downloads, but it might be
more confusing to the users, so I went to categorically restrict
stage cache uploads and downloads for http filesystems.
2022-06-12 13:49:56 +03:00
Saugat Pachhai (सौगात) e6db6ffc89 runcache: fix push from Windows to remote filesystems
We were passing paths with '\\' in the filename instead of posix paths to
remote filesystems which was causing failures to upload.
Although in some filesystems, this was failing silently, so upload would seem
to have passed, but the download later would fail.
2022-06-11 11:34:12 +03:00
Ruslan Kuprieiev 9ac2f49b57 Revert "fix dvc-objects/data imports"
This reverts commit 677da2b22c.
2022-06-10 12:01:07 +03:00
Ruslan Kuprieiev 9b2adfd3cc Revert "deps: bump dvc-data to 0.0.3"
This reverts commit 6dd3f1e053.
2022-06-10 12:01:07 +03:00
Saugat Pachhai (सौगात) 6dd3f1e053 deps: bump dvc-data to 0.0.3 2022-06-10 14:07:33 +05:45
Daniele Trifirò 677da2b22c fix dvc-objects/data imports 2022-06-10 14:07:33 +05:45
dberenbaum a3ee993739 remove .github/FUNDING.yml 2022-06-09 08:32:41 +05:45
dberenbaum 95f67445de readme: remove donate requests 2022-06-09 08:32:41 +05:45
Peter Rowlands c9a3cb803c sshfs: bump min ver to 2022.6.0 2022-06-07 05:17:08 -07:00
Daniele Trifirò 41ecd2e204 scm: fix clone
`fetch_all_exp()` in `clone()` was called with `url="origin"`, which
resulted in the operation being performed with the remote URL defined
in the cloned repo's config, which did not include any credentials
initially provided to clone.

Fixes #7670
2022-06-07 05:11:05 -07:00
dberenbaum 33b3afa2f5 exp init: create output dirs 2022-06-07 17:55:24 +05:45
Daniele Trifirò e849162018 exp: speed up repro execution with untracked directories in workspace
When large untracked directories are present in the workspace, a lot of
time is spent collecting untracked files in `scm.status` and `scm.is_dirty`.
2022-06-07 04:43:35 -07:00
Yury c14f96391a checkout: --relink show helpful message on completion 2022-06-07 00:31:42 +02:00
dependabot[bot] 88d3582d40 build(deps): Bump pre-commit/action from 2.0.3 to 3.0.0
Bumps [pre-commit/action](https://github.com/pre-commit/action) from 2.0.3 to 3.0.0.
- [Release notes](https://github.com/pre-commit/action/releases)
- [Commits](https://github.com/pre-commit/action/compare/v2.0.3...v3.0.0)

---
updated-dependencies:
- dependency-name: pre-commit/action
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-06-06 04:20:08 -07:00
Ruslan Kuprieiev 8fa0e40669 setup: set upper bound on networkx 2022-06-06 13:31:59 +03:00
Ruslan Kuprieiev a3d6b1299a brancher: use scm.root_dir to determine relative cwd
Fixes #7776
2022-06-06 12:42:22 +03:00
Paweł Redzyński 20c7b0e3e6 plots: grouping: stop using dpath.util.search 2022-06-03 16:48:33 +03:00
huang06 6794dd28f7 docs: update package installation 2022-06-02 17:46:14 +08:00
Peter Rowlands 1cc803d12b exp: output troubleshooting link on shallow merge failure 2022-06-02 01:15:16 -07:00
Ruslan Kuprieiev 2b6aa01392 setup: bump scmrepo to 0.0.24
Fixes #7824
2022-06-01 20:51:08 +03:00
Daniele Trifirò 906c87fdef tests: replace unecessary map() call in test_live
caught by flake8
2022-06-01 20:41:14 +03:00
Daniele Trifirò 52f02d238d bump scmrepo to 0.0.23
`scmrepo==0.0.23` includes proper support for windows file:// URLs
(https://github.com/iterative/scmrepo/pull/68), so Windows tests
relying on file URLs had to be fixed in order to be valid
[RFC 8089](https://datatracker.ietf.org/doc/html/rfc8089) URLs.
2022-06-01 09:20:07 +05:45
David de la Iglesia Castro 3d791778de plots: Pass templates_dir to match_renderers.
We were forgetting to pass default template dir.

Fixes #7817.
2022-05-31 16:17:58 +02:00
Saugat Pachhai (सौगात) 1e77be3ae3 testing: use shutil.copytree with dirs_exist_ok
See https://docs.python.org/3/library/shutil.html#shutil.copytree.
There is dirs_exist_ok kwarg in Python >3.8.
2022-05-30 20:40:31 +05:45
Ruslan Kuprieiev 844f77b4f9 dvc: drop python 3.7
Also upgraded with `pyupgrade --py38-plus`

Fixes #7708
2022-05-30 16:51:35 +03:00
David de la Iglesia Castro 34ef1807be exp: show: Include additional info in --json.
Use relpath to repo.root_dir as keys in deps and outs.
Add `use_cache` and `is_data_source` for outs.

This allows to differentiate git-tracked dependencies and
intermediate outputs.

Closes #7575
Closes #7790
2022-05-25 09:01:39 +02:00
Dave Berenbaum dae0000bcd exp list: fix git_remote metavar 2022-05-24 18:47:26 -07:00
David de la Iglesia Castro 109d0e4e28 dag: mermaid: Use quotation marks to escape node name.
Fixes #7731
2022-05-24 18:27:58 +02:00
Saugat Pachhai (सौगात) 68b0d61c9e tests: move run cache test to test_remote 2022-05-24 10:16:37 +05:45
Saugat Pachhai (सौगात) 942a080567 dvc.stage.cache: fix typo, was using src filesystem to transfer
This was working for LocalFileSystem as they work for any directories/path.
It's hard to test this these days, as we don't have remote tests inside
dvc, so it was not caught.

Potentially fixes #7718.
2022-05-23 16:37:40 +03:00
Saugat Pachhai (सौगात) 60cbcec399 formatting: consider dvc-render as a known first party for ordering imports 2022-05-23 15:49:47 +05:45
Saugat Pachhai (सौगात) 0c5a18513c fix linter issue 2022-05-23 14:12:54 +05:45
Alexander Schepanovski b5c28dd9f9 Catch correct exception class in params.show() 2022-05-23 00:34:34 -07:00
dependabot[bot] 84439e6a04 build(deps): Bump dvc-data from 0.0.1 to 0.0.2
Bumps [dvc-data](https://github.com/iterative/dvc-data) from 0.0.1 to 0.0.2.
- [Release notes](https://github.com/iterative/dvc-data/releases)
- [Commits](https://github.com/iterative/dvc-data/compare/0.0.1...0.0.2)

---
updated-dependencies:
- dependency-name: dvc-data
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-05-21 20:46:41 +05:45
Saugat Pachhai (सौगात) 75fa487406 dvc: remove unused utils and redundant tests
The tests should be in dvc-objects repo npw, and will be migrated soon.
The nanotime and diskcache are specified in dvc-objects, so we don't need
those here.
2022-05-20 19:17:00 +05:45
Saugat Pachhai (सौगात) 0ecd47b333 deps: remove jaraco.windows dependency
This is used by dvc-objects, and it has the dependency declared.
2022-05-20 15:18:13 +05:45
Saugat Pachhai (सौगात) 9710cafd38 deps: add dvc-objects dependency 2022-05-20 15:13:50 +05:45
Saugat Pachhai (सौगात) e34767ca90 logging: show logs from dvc-data 2022-05-20 15:13:50 +05:45
Saugat Pachhai (सौगात) 9a2feaa4ed dvc: remove dvc.data, fix imports 2022-05-20 15:13:50 +05:45
Saugat Pachhai (सौगात) 7bc98e3fb3 tests: remove objects related tests 2022-05-20 14:02:08 +05:45
Saugat Pachhai (सौगात) 5e561c1dfd deps: add dvc-objects as a dependency 2022-05-20 14:02:08 +05:45
Saugat Pachhai (सौगात) 572b6dfca9 logging: show logs from dvc-objects 2022-05-20 14:02:08 +05:45
Saugat Pachhai (सौगात) 37921d618d dvc: remove dvc.objects, fix imports 2022-05-20 14:02:08 +05:45
Saugat Pachhai (सौगात) 95c6cea36d tests: restructure some tests for objects/data 2022-05-19 18:38:21 +05:45
Saugat Pachhai (सौगात) 455260b29c data/objects: reduce log levels in dvc-objects and dvc-data
Also introduces a `validate_status` kwarg in `data.transfer`,
which is used in dvc to log for missing version info.
2022-05-19 18:33:39 +05:45
Saugat Pachhai (सौगात) 82dc67d890 objects: use separate Tqdm implementations
Now dvc.objects and dvc.data uses the implementation from dvc.objects
for Tqdm progress bars. This is temporary. :)
2022-05-19 18:07:47 +05:45
Saugat Pachhai (सौगात) 2057c471bb data.checkout: remove dependency on DVC; prompts and DvcException 2022-05-19 15:11:27 +03:00
Saugat Pachhai (सौगात) f23d31af64 fs/data: move repo related utils to dvc
This moves get_fs_config/get_fs_cloud and ODBManager to DVC
as they require DVC related utilities, and we don't need them
strictly in dvc-objects/dvc-data.
This also adds support to ReferenceHashFile to load from
any filesystem, using it's module name and filename.
Now we can get rid of DVCFileSystem dependency in
ReferenceHashFile.
This is a temporary solution, we really need a registry.
(I am not quite sure if this works in pyinstaller mode,
but I think it should, it's how fsspec does it if I understand
correctly.)
2022-05-18 19:39:09 +03:00
Saugat Pachhai (सौगात) cf5d3830c5 dvc.objects: use own internal error instead of DvcException
transfer raises internal TransferError, merge raises internal MergeError
and local ODB raises ODBError on unprotect.
transfer's error is reraised to FileTransferError back in DataCloud.
2022-05-18 12:22:57 +03:00
Saugat Pachhai (सौगात) 32cd6c2c03 dvc.objects: use stub ignore in dvc.objects/dvc.data
This commit:
* defines a `Ignore` protocol in `dvc.objects`, that expects a `find` method.
  This will be used in dvc-data and dvc-objects instead of depending on dvc.ignore.
  dvcignore is expected to respect this protocol, which it does.
* renames `dvcignore` kwarg to `ignore` in `dvc-data` and `dvc-objects`.
* teaches dvc.cli that `IgnoreInCollectedError` is a known exception
   and is logged correctly and adds a test for the behaviour.

I am not happy that we need to hardcode `.dvcignore` in dvc-data
but I don't see any easy way, since we always try to avoid
staging if the tree contains .dvcignore file, even if .dvcignore
is not passed.
2022-05-18 12:22:28 +03:00
Saugat Pachhai (सौगात) 54917e3255 dvc.objects: fix typing imports 2022-05-18 11:49:45 +05:45
dependabot[bot] e8a439df8d build(deps): Bump pyinstaller from 5.0 to 5.1
Bumps [pyinstaller](https://github.com/pyinstaller/pyinstaller) from 5.0 to 5.1.
- [Release notes](https://github.com/pyinstaller/pyinstaller/releases)
- [Changelog](https://github.com/pyinstaller/pyinstaller/blob/develop/doc/CHANGES.rst)
- [Commits](https://github.com/pyinstaller/pyinstaller/compare/v5.0...v5.1)

---
updated-dependencies:
- dependency-name: pyinstaller
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-05-17 20:15:17 -07:00
Ruslan Kuprieiev 71a4b4823a fs: path: don't overuse parts
These days we have `self.flavour` that is more efficient and more simple.
2022-05-17 22:29:34 +03:00
Ruslan Kuprieiev 01cc97f38a fs: path: use flavour.basename 2022-05-17 20:21:46 +03:00
Saugat Pachhai (सौगात) 3872f79dad objects.fs: do not use format_link, DvcException and fix_env from DVC
* Introduce ConfigError and AuthError in dvc.objects.fs and raise it
  instead of dvc.config.ConfigError.
* Provide hints and links by catching those errors in dvc.cli.main,
  i.e decouple UI messages from filesystems for AuthError and
  ConfigError.
* Copy flatten/unflatten utils to dvc.objects.fs.utils.
2022-05-17 18:23:29 +03:00
Saugat Pachhai (सौगात) 48176b80f6 fs: do not use DvcException in filesystems
* Refactor check_requires, move UI messages to dvc.cli
* Refactor link related error
2022-05-17 16:48:38 +03:00
Saugat Pachhai (सौगात) 8c9a9e9a1f objects.fs: move schemes to objects.fs 2022-05-17 17:02:14 +05:45
Saugat Pachhai (सौगात) 120eb09c4d fs: move GitFileSystem out of dvc.objects.fs
This is more of a DVC thing than objects.
2022-05-17 16:50:33 +05:45
Saugat Pachhai (सौगात) bf7892012d objects.fs: copy executors to dvc.objects 2022-05-17 16:50:21 +05:45
Saugat Pachhai (सौगात) 36605eea4c objects.hash: rename HashedStreamReader to HashStreamFile 2022-05-17 13:25:38 +03:00
Saugat Pachhai (सौगात) 01e5f9eadd objects.hash: use fobj.read instead of read1 2022-05-17 13:25:38 +03:00
Saugat Pachhai (सौगात) 752e10a834 dvc.objects: move HashedStreamReader to objects, use it for calculating fobj_md5
Now HashedStreamReader will be used to calculate md5 in fobj_md5/hash_file.

Also:
* adds in `bytes_md5` that may be useful for testing.
* adds a hasher-registry with hashlib
* adds a `text=` kwarg to be able to specify to use dos2unix or not
  (useful for testing)
* makes `localfs` the default filesystem when `fs` arg is not passed
  (makes it easier to test in the REPL)
2022-05-17 13:25:38 +03:00
Saugat Pachhai (सौगात) 092eda183c objects.fs: use getpass for prompts
Note that this will change the behaviour of DVC to always show
prompt even in --quiet mode, which is what we need.
Previously it'd prompt without any message.
2022-05-17 16:06:27 +05:45
Saugat Pachhai (सौगात) d82e094b13 fs: move filesystems to dvc.objects.fs.implementations 2022-05-16 17:54:57 +03:00
Saugat Pachhai (सौगात) 570e3a5359 dvc.fs: move fs to dvc.objects.fs
Some of the APIs/FileSystems are reimported inside dvc.fs module.
2022-05-16 13:15:19 +03:00
Saugat Pachhai (सौगात) b8e770747f fs.utils: copy dvc.utils.fs to dvc.fs.utils 2022-05-16 11:51:48 +05:45
dependabot[bot] 1999ecf0d3 build(deps-dev): Bump pylint from 2.13.8 to 2.13.9
Bumps [pylint](https://github.com/PyCQA/pylint) from 2.13.8 to 2.13.9.
- [Release notes](https://github.com/PyCQA/pylint/releases)
- [Changelog](https://github.com/PyCQA/pylint/blob/main/ChangeLog)
- [Commits](https://github.com/PyCQA/pylint/compare/v2.13.8...v2.13.9)

---
updated-dependencies:
- dependency-name: pylint
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-05-16 08:54:42 +05:45
dependabot[bot] 1ff5f30839 build(deps-dev): Bump filelock from 3.6.0 to 3.7.0
Bumps [filelock](https://github.com/tox-dev/py-filelock) from 3.6.0 to 3.7.0.
- [Release notes](https://github.com/tox-dev/py-filelock/releases)
- [Changelog](https://github.com/tox-dev/py-filelock/blob/main/docs/changelog.rst)
- [Commits](https://github.com/tox-dev/py-filelock/compare/3.6.0...3.7.0)

---
updated-dependencies:
- dependency-name: filelock
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-05-15 19:57:31 -07:00
Saugat Pachhai (सौगात) c6ae91c907 dvc.fs: fix iscopy 2022-05-16 08:25:23 +05:45
Saugat Pachhai (सौगात) dc1d3e880a dvc.objects.cache: set type in a more compatible way
It turns out that diskcache.Disk saves passed arguments to the database
and uses that all the time. So this means that we are not forward
compatible as it breaks moving from newer version of DVC to an older
one. We don't promise this, but this breaks our benchmarks which
are probably not isolated enough.

Regarding the use of cache, it is a bit iffy to extend it this way.
We only need this type for error messages. We could consider removing
this, but since the error message is documented and it's not too hard
to extend this :), I decided to preserve the message.
2022-05-13 11:00:31 +05:45
Saugat Pachhai (सौगात) 3f5757a0a5 dvc.objects: move hashing functions to dvc.objects
This commit moves `HashedStreamReader`/`get_hash_file`/`file_md5`
into `dvc.objects.hash`.

The `get_hash_file` has been renamed to `hash_file`.
This also copies `relpath` and `is_exec` to the `dvc.fs.utils`.
2022-05-12 20:33:18 +03:00
Daniele Trifirò 7a795f79db dvc.data: save and try loading raw dir objects
When staging a directory, always save a "raw dir object" to the odb.
If the corresponding ".dir" object has not been added to the odb,
`stage()` calls can load the tree from the raw dir object instead of
rebuilding it by walking the directory.

This can lead to significant speed improvements when calling
`dvc status` for modified directories.

Fixes #7390
2022-05-12 19:27:36 +03:00
skshetry b3fb0dfdad dvc.objects: extend diskcache to handle pickle errors (#7734)
dvc.objects: extend diskcache to handle pickle errors
2022-05-12 21:12:33 +05:45
Saugat Pachhai (सौगात) ee29888e18 dvc.objects: move get_mtime_and_size to dvc.objects.utils 2022-05-12 18:02:42 +03:00
Saugat Pachhai (सौगात) 11eaa87849 add typings to istextfile and system
Also moves umask to dvc.fs.system
2022-05-12 18:02:42 +03:00
Saugat Pachhai (सौगात) b4faa5616f system: change System class to a dvc.fs.system module 2022-05-12 18:02:42 +03:00
Saugat Pachhai (सौगात) 4d6df989f2 dvc.objects: change imports to relative 2022-05-12 18:02:42 +03:00
Saugat Pachhai (सौगात) e585c52187 istextfile: move to dvc.objects 2022-05-12 18:02:42 +03:00
Saugat Pachhai (सौगात) 4add88f627 objects: move System to dvc.fs 2022-05-12 18:02:42 +03:00
Saugat Pachhai (सौगात) aac2fc0ca0 dvc.fs: rename fs.utils to fs.generic
In the spirit of fsspec.generic, it is for cross-filesystem operations.
Trying to avoid `fs.utils` as much as possible, but we have some
functions that are really utilities coming, so I am making a place
for them. :)
2022-05-12 18:02:15 +03:00
Ruslan Kuprieiev 005d56eedf fs: rename RepoFileSystem to DvcFileSystem 2022-05-12 00:39:41 +03:00
Ruslan Kuprieiev b6d25825c8 fs: rename DvcFileSystem to DataFileSystem
Current naming for `DvcFileSystem` and `RepoFileSystem` is confusing, because
dvc is not only about data and it is much more natural to expect something
named `dvcfs` to include complete view for your whole repo (including git
files), which is what `repofs` is doing right now.

`DvcFileSystem` can provide a view not only for the repo data, but also for
external data (e.g. local external outputs). So it makes more sense to call
it a `DataFileSystem`, since it really represents the data management side
of dvc.
2022-05-11 21:49:57 +03:00
dberenbaum 799dca8b67 update value prop in readme 2022-05-11 19:52:11 +03:00
Karthikeyan SingaravelanandDavid de la Iglesia Castro 3faf413288 Use sorted output in test since order is not deterministic.
Co-authored-by: David de la Iglesia Castro <[email protected]>
2022-05-11 18:40:21 +03:00
Karthikeyan Singaravelan a3261637de dag: fix dot file rendering order. 2022-05-11 18:40:21 +03:00
Karthikeyan Singaravelan b8d738220d Revert other tests and test only glob exception. 2022-05-11 18:37:09 +03:00
pre-commit-ci[bot] fb36db450f [pre-commit.ci] auto fixes from pre-commit.com hooks
for more information, see https://pre-commit.ci
2022-05-11 18:37:09 +03:00
Karthikeyan SingaravelanandDavid de la Iglesia Castro 946ceb288d Update tests/func/test_data_cloud.py
Co-authored-by: David de la Iglesia Castro <[email protected]>
2022-05-11 18:37:09 +03:00
Karthikeyan Singaravelan 8d99ce06aa Move test to test_data_cloud. 2022-05-11 18:37:09 +03:00
Karthikeyan Singaravelan 9b3873c4f0 Move exception raising to glob_targets to cover all commands. 2022-05-11 18:37:09 +03:00
Karthikeyan Singaravelan e177f041c8 Fail on sync when there is no match for glob. 2022-05-11 18:37:09 +03:00
Ruslan Kuprieiev a80a85e6bd dvc: detach gitfs from local paths
Our gitfs paths are currently tied to the local path in which the cloned
repository resides in, which results in a lot of hacky assumptions throughout
the code.

This PR detaches gitfs from local paths completely, making dvc work with a
proper fsspec gitfs implementation.

Part of #7543
2022-05-11 18:17:39 +03:00
Saugat Pachhai (सौगात) 14c9348f93 dvc.objects: move hash_info, state and meta into dvc.objects 2022-05-11 17:35:48 +03:00
karajan1001 7a1f133f29 dvc ls: not raise PathMissingError on empty dir.
fix #5841
2022-05-11 16:38:58 +03:00
Gao 45a01c6a30 Revert "dvc ls: not raise PathMissingError on empty dir."
This reverts commit 09afd2a0cd.
2022-05-11 14:54:13 +03:00
karajan1001 09afd2a0cd dvc ls: not raise PathMissingError on empty dir.
fix #5841
2022-05-11 11:24:32 +03:00
Saugat Pachhai (सौगात) d92c6fed67 fs.callbacks: simplify, ensure None does not break them, lazy richcallbacks 2022-05-10 20:37:21 +05:45
Saugat Pachhai (सौगात) f10dbef0cf TqdmCallback: minor fixup, check for None explicitly
Tqdm supports __bool__, so we should really use `is not None` test
rather than boolean check. This is not used anywhere right now, but
I'd prefer being correct.
2022-05-10 14:22:13 +05:45
Saugat Pachhai (सौगात) 8fb2f65d4b TqdmCallback: make it lazy 2022-05-10 13:41:54 +05:45
dberenbaum 477f266dc5 exp init: fixes #7534; simplifies/updates exp init --live 2022-05-09 20:58:27 +05:45
Ruslan Kuprieiev b14a972cd0 repofs: use / as root_marker
This makes dvcfs/repofs much easier to work with and allows it to support
isabs/abspath/etc correctly, as previously any full path (with root_marker "")
would be impossible to distinguish from a relative one.

This also detaches external workspaces from the main repo workspace in
DvcFileSystem, which was necessary to be able to distinguish dvcfs abspaths
from local external output paths. Note that currently we still have limited
support for those (e.g. get/api supports them, but import doesn't) and this
change keeps it that way.
2022-05-08 17:19:53 +03:00
Saugat Pachhai (सौगात) 562e61235b objects: do not inherit from DvcException 2022-05-06 13:24:41 +03:00
David de la Iglesia Castro 9bd9ac4a37 FileSystem: Handle encoding via kwargs.
Drop if None.

Closes #7691
2022-05-06 02:34:38 +03:00
Saugat Pachhai (सौगात) f89f4ac152 fs.put: introduce non-recursive put 2022-05-05 21:22:29 +03:00
Saugat Pachhai (सौगात) 54dd3ae90c fs.get: use async implementation when supported by the filesystem 2022-05-05 14:15:21 +03:00
dberenbaum 35d2963069 repro/run/stage: reorder options 2022-05-05 16:42:29 +08:00
Samuel Knight 1f5f2f5c97 dvcfile: preserve 'remote' on add and commit
Preserves 'remote' output on dvc add and dvc commit.

Fixes #7356
2022-05-05 08:36:37 +05:45
Saugat Pachhai (सौगात) c64db917f5 fs: add more fsspec methods 2022-05-05 08:16:34 +05:45
Paweł Redzyński 9d476aab8b plots: image converter return absolute paths 2022-05-04 10:57:13 +02:00
Saugat Pachhai (सौगात) 5067e1f5bc fs.utils.transfer: remove tqdm progress bars 2022-05-03 15:15:48 +05:45
Saugat Pachhai (सौगात) 8a0c5680e0 fs: remove download 2022-05-03 14:42:19 +05:45
Saugat Pachhai (सौगात) 61699d1d66 fs: remove upload function 2022-05-03 11:22:21 +05:45
dependabot[bot] 94c776182e build(deps-dev): Bump pytest from 7.1.1 to 7.1.2
Bumps [pytest](https://github.com/pytest-dev/pytest) from 7.1.1 to 7.1.2.
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest/compare/7.1.1...7.1.2)

---
updated-dependencies:
- dependency-name: pytest
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-05-03 10:18:39 +05:45
dependabot[bot] e3d3500db8 build(deps-dev): Bump pylint from 2.13.7 to 2.13.8
Bumps [pylint](https://github.com/PyCQA/pylint) from 2.13.7 to 2.13.8.
- [Release notes](https://github.com/PyCQA/pylint/releases)
- [Changelog](https://github.com/PyCQA/pylint/blob/main/ChangeLog)
- [Commits](https://github.com/PyCQA/pylint/compare/v2.13.7...v2.13.8)

---
updated-dependencies:
- dependency-name: pylint
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-05-03 09:48:49 +05:45
Saugat Pachhai (सौगात) d0e05c4b66 deps: bump s3fs to 2022.02.0
The callbacks on _get_file/_put_file was only supported on >2022.02.0.
Fixes #7669.
2022-05-02 12:57:00 +03:00
Ruslan Kuprieiev 58d960a47c Revert "fs.utils: add upload that can be conditionally atomic"
This reverts commit dd187df667.
2022-04-30 17:34:39 +03:00
Saugat Pachhai (सौगात) dd187df667 fs.utils: add upload that can be conditionally atomic
The PR also makes odb.add operations atomic, but the checkout is still
not atomic.
2022-04-29 23:02:15 +03:00
Saugat Pachhai (सौगात) b71ea349d2 repofs: only use dvcfs when --dvc-only is specified 2022-04-29 12:03:46 +03:00
560 changed files with 26175 additions and 23725 deletions
-10
View File
@@ -1,10 +0,0 @@
comment: false
coverage:
status:
project:
default:
target: 90
threshold: 10%
patch:
default:
threshold: 25%
-16
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@@ -1,16 +0,0 @@
[run]
branch = True
source = dvc
omit =
*__main__.py
[report]
exclude_lines =
if __name__ == .__main__.:
if typing.TYPE_CHECKING:
if TYPE_CHECKING:
pass
raise NotImplementedError
# pragma: no cover
# pragma: no cover
\.\.\.$
-1
View File
@@ -1,4 +1,3 @@
/tests
/dvc
/.github
/bin
+19
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@@ -0,0 +1,19 @@
[flake8]
ignore=
# Whitespace before ':'
E203
# Too many leading '#' for block comment
E266
# Line break occurred before a binary operator
W503
# unindexed parameters in the str.format, see:
# https://pypi.org/project/flake8-string-format/
P1
# use `!r` instead of surrounding by quotes
B028
max_line_length = 88
max-complexity = 10
select = B,C,E,F,W,T4,B902,T,P,TYP
show_source = true
count = true
min_python_version = 3.8.0
+10
View File
@@ -0,0 +1,10 @@
# The following commits will be ignored by the GitHub blame view.
# You can configure `git blame` to use this file as the default ignore file:
# git config blame.ignoreRevsFile .git-blame-ignore-revs
# or, you can also manually ignore commits from this file by doing:
# git blame --ignore-revs-file .git-blame-ignore-revs <filepath>
# see the `blame.markIgnoredLines` and `blame.markUnblamableLines` options as well.
# Refer to: https://git-scm.com/docs/git-blame#Documentation/git-blame.txt---ignore-revs-fileltfilegt
# update black to 2023 stable style and change line-length to 88
a86470ccbc693d6f0a4f8066cbd1357e5191c4ff
+3
View File
@@ -1 +1,4 @@
node: $Format:%H$
node-date: $Format:%cI$
describe-name: $Format:%(describe:tags=true)$
ref-names: $Format:%D$
-1
View File
@@ -1 +0,0 @@
* @iterative/dvc
-3
View File
@@ -1,3 +0,0 @@
# These are supported funding model platforms
patreon: DVCorg
+1 -1
View File
@@ -8,7 +8,7 @@ about: Create a bug report to help us improve DVC
<!--
## Issue name
Issue names must follow the pattern `command: description` where the command is the dvc command that you are trying to run. The description should describe the consequence of the bug.
Issue names must follow the pattern `command: description` where the command is the dvc command that you are trying to run. The description should describe the consequence of the bug.
Example: `repro: doesn't detect input changes`
-->
@@ -2,4 +2,3 @@
name: "\U0001F680 Feature Request"
about: Suggest an idea for this project
---
+12
View File
@@ -0,0 +1,12 @@
codecov:
notify:
wait_for_ci: true
coverage:
status:
project:
default:
target: auto
threshold: 2%
patch: off
github_checks:
annotations: false
-9
View File
@@ -1,9 +0,0 @@
pull_request_rules:
- name: backport patches to 1.11
conditions:
- base=main
- label=backport-1.11
actions:
backport:
branches:
- "1.11"
-49
View File
@@ -1,49 +0,0 @@
# Config for https://github.com/apps/release-drafter
name-template: "$RESOLVED_VERSION 🦉 "
tag-template: "$RESOLVED_VERSION"
categories:
- title: "🚀 New Features and Enhancements "
labels:
- "feature"
- "enhancement"
- "ui"
- title: "💣 Breaking Changes "
labels:
- "breaking-change"
- title: "🏇 Optimizations "
labels:
- "optimize"
- "performance"
- title: "🐛 Bug Fixes "
labels:
- "bugfix"
- "bug"
- title: "🔨 Maintenance "
labels:
- "maintenance"
- "refactoring"
- "chore"
- "build"
- "ci"
change-template: "- $TITLE (#$NUMBER) @$AUTHOR"
version-resolver:
major:
labels:
- "major"
minor:
labels:
- "minor"
patch:
labels:
- "patch"
default: patch
exclude-labels:
- "skip-changelog"
template: |
> Refer to https://dvc.org/doc/install for installation instructions.
## Changes
$CHANGES
Thanks again to $CONTRIBUTORS for the contributions! 🎉
+16
View File
@@ -0,0 +1,16 @@
changelog:
exclude:
labels: ["skip-changelog"]
categories:
- title: 🛠 Breaking Changes
labels: ["breaking-change"]
- title: 🚀 New Features and Enhancements
labels: ["feature", "enhancement", "ui"]
- title: ⚡ Optimizations
labels: ["optimize", "performance"]
- title: 🐛 Bug Fixes
labels: ["bugfix", "bug"]
- title: 🔨 Maintenance
labels: ["maintenance", "refactoring", "chore", "build", "ci"]
- title: Other Changes
labels: ["*"]
+7 -12
View File
@@ -1,23 +1,18 @@
name: benchmarks
on: [pull_request, workflow_dispatch]
concurrency:
group: ${{ github.workflow }}-${{ github.head_ref || github.run_id }}
cancel-in-progress: true
jobs:
bench:
name: run benchmarks
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
os: [ubuntu-18.04]
runs-on: ubuntu-latest
steps:
- name: Cancel Previous Runs
uses: styfle/[email protected]
- uses: actions/setup-python@v4
with:
access_token: ${{ github.token }}
- uses: actions/setup-python@v3
with:
python-version: 3.7
python-version: "3.11"
- uses: iterative/dvc-bench@main
with:
pytest_options: "-k 'test_init or test_help'"
+39
View File
@@ -0,0 +1,39 @@
name: "CodeQL"
on:
push:
branches: ["main"]
pull_request:
branches: ["main"]
schedule:
- cron: '32 19 * * 2'
workflow_dispatch:
permissions:
contents: read
jobs:
analyze:
name: Analyze
runs-on: ubuntu-latest
permissions:
actions: read
contents: read
security-events: write
strategy:
fail-fast: false
matrix:
language: ['python']
steps:
- name: Checkout repository
uses: actions/checkout@v3
- name: Initialize CodeQL
uses: github/codeql-action/init@v2
with:
languages: ${{ matrix.language }}
- name: Perform CodeQL Analysis
uses: github/codeql-action/analyze@v2
+74 -119
View File
@@ -6,152 +6,107 @@ on:
release:
types: [released, prereleased]
workflow_dispatch:
permissions: # added using https://github.com/step-security/secure-workflows
contents: read
jobs:
deb:
runs-on: ubuntu-18.04
binary:
permissions:
contents: write # for actions/upload-release-asset to upload release asset
strategy:
matrix:
include:
- {pkg: "deb", os: "ubuntu-18.04", asset: "dvc_${{ github.event.release.tag_name }}_amd64.deb"}
- {pkg: "rpm", os: "ubuntu-18.04", asset: "dvc-${{ github.event.release.tag_name }}-1.x86_64.rpm"}
- {pkg: "osxpkg", os: "macos-10.15", asset: "dvc-${{ github.event.release.tag_name }}.pkg"}
- {pkg: "exe", os: "windows-2019", asset: "dvc-${{ github.event.release.tag_name }}.exe"}
name: ${{ matrix.pkg }}
runs-on: ${{ matrix.os }}
steps:
- uses: actions/checkout@v3
with:
fetch-depth: 0
- name: Set up Python 3.9
uses: actions/setup-python@v3
- name: Set up Python 3.10
uses: actions/setup-python@v4
with:
python-version: 3.9
- name: Set up Ruby 2.4
uses: actions/[email protected]
python-version: "3.10"
cache: pip
cache-dependency-path: |
pyproject.toml
scripts/build-requirements.txt
- name: Set up Ruby 2.6
uses: ruby/setup-ruby@v1
if: matrix.pkg != 'exe'
with:
ruby-version: 2.4
- name: Install deps
run: |
pip install .[all]
pip install -r scripts/build-requirements.txt
gem install --no-document fpm
- name: Build deb
run: python scripts/build.py deb
- name: Publish deb
if: github.event_name == 'release'
uses: actions/[email protected]
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
with:
upload_url: ${{ github.event.release.upload_url }}
asset_path: scripts/fpm/dvc_${{ github.event.release.tag_name }}_amd64.deb
asset_name: dvc_${{ github.event.release.tag_name }}_amd64.deb
asset_content_type: binary/octet-stream
rpm:
runs-on: ubuntu-18.04
steps:
- uses: actions/checkout@v3
with:
fetch-depth: 0
- name: Set up Python 3.9
uses: actions/setup-python@v3
with:
python-version: 3.9
- name: Set up Ruby 2.4
uses: actions/[email protected]
with:
ruby-version: 2.4
- name: Install deps
run: |
pip install .[all]
pip install -r scripts/build-requirements.txt
gem install --no-document fpm
- name: Build rpm
run: python scripts/build.py rpm
- name: Publish rpm
if: github.event_name == 'release'
uses: actions/[email protected]
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
with:
upload_url: ${{ github.event.release.upload_url }}
asset_path: scripts/fpm/dvc-${{ github.event.release.tag_name }}-1.x86_64.rpm
asset_name: dvc-${{ github.event.release.tag_name }}-1.x86_64.rpm
asset_content_type: binary/octet-stream
osxpkg:
runs-on: macos-10.15
steps:
- uses: actions/checkout@v3
with:
fetch-depth: 0
- name: Set up Python 3.9
uses: actions/setup-python@v3
with:
python-version: 3.9
- name: Set up Ruby 2.4
uses: actions/[email protected]
with:
ruby-version: 2.4
- name: Install deps
run: |
# available lxml (webdav dependency) wheels are built with an old
# SDK, which breaks osxpkg notarization. Building from scratch
# instead.
pip install .[all] --no-binary lxml
pip install -r scripts/build-requirements.txt
gem install --no-document fpm
- name: Build
run: python scripts/build.py osxpkg
- name: Publish
if: github.event_name == 'release'
uses: actions/[email protected]
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
with:
upload_url: ${{ github.event.release.upload_url }}
asset_path: scripts/fpm/dvc-${{ github.event.release.tag_name }}.pkg
asset_name: dvc-${{ github.event.release.tag_name }}.pkg
asset_content_type: binary/octet-stream
exe:
runs-on: windows-2019
steps:
- uses: actions/checkout@v3
with:
fetch-depth: 0
- name: Set up Python 3.9
uses: actions/setup-python@v3
with:
python-version: 3.9
ruby-version: '2.6'
- name: Install fpm
if: matrix.pkg != 'exe'
run: gem install --no-document fpm
- name: Install deps
run: |
pip install --upgrade pip wheel setuptools
pip install .[all]
pip install -r scripts/build-requirements.txt
- name: Pull images
run: |
dvc pull
- name: Build
run: python scripts\build.py exe
shell: cmd
- name: Publish
run: dvc pull
- name: Build ${{ matrix.pkg }}
run: python scripts/build.py ${{ matrix.pkg }}
- name: Publish ${{ matrix.pkg }}
if: github.event_name == 'release'
uses: actions/[email protected]
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
uses: actions/[email protected]
with:
upload_url: ${{ github.event.release.upload_url }}
asset_path: scripts/innosetup/dvc-${{ github.event.release.tag_name }}.exe
asset_name: dvc-${{ github.event.release.tag_name }}.exe
asset_path: scripts/${{ matrix.pkg == 'exe' && 'innosetup' || 'fpm' }}/${{ matrix.asset }}
asset_name: ${{ matrix.asset }}
asset_content_type: binary/octet-stream
pip:
runs-on: ubuntu-18.04
runs-on: ubuntu-20.04
steps:
- uses: actions/checkout@v3
with:
fetch-depth: 0
- name: Set up Python 3.7
uses: actions/setup-python@v3
- name: Set up Python 3.8
uses: actions/setup-python@v4
with:
python-version: 3.7
python-version: 3.8
- name: Install
run: pip install ".[all,tests]"
- name: Build packages
run: pip install --upgrade pip wheel
- name: Force version for Test PyPI uploads
if: ${{ !startsWith(github.ref, 'refs/tags') }}
run: |
pip install -U pip
./scripts/build_package.sh
pip install setuptools_scm
echo version=$(python -m setuptools_scm | awk -F+ '{print $1}' | tail -1) >> $GITHUB_ENV
- name: Build packages
run: ./scripts/build_package.sh
env:
SETUPTOOLS_SCM_PRETEND_VERSION: ${{ env.version }}
- name: Publish packages to PyPI
if: github.event_name == 'release'
uses: pypa/gh-action-pypi-publish@master
uses: pypa/gh-action-pypi-publish@release/v1
with:
user: __token__
password: ${{ secrets.PYPI_TOKEN }}
- name: Publish to Test PyPI
if: ${{ github.event_name == 'release' || (github.event_name == 'push' && github.ref == 'refs/heads/main') }}
uses: pypa/gh-action-pypi-publish@release/v1
with:
password: ${{ secrets.TEST_PYPI_TOKEN }}
repository_url: https://test.pypi.org/legacy/
skip_existing: true
+54
View File
@@ -0,0 +1,54 @@
name: Remote Plugin Tests
on:
pull_request:
workflow_dispatch:
concurrency:
group: ${{ github.workflow }}-${{ github.head_ref || github.run_id }}
cancel-in-progress: true
permissions:
contents: read
jobs:
tests:
timeout-minutes: 45
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
os: [ubuntu-20.04]
pyv: ["3.10"]
plugin: ["dvc-s3"]
steps:
- uses: actions/checkout@v3
with:
path: dvc
- uses: actions/checkout@v3
with:
repository: iterative/${{ matrix.plugin }}
ref: main
path: ${{ matrix.plugin }}
- name: Set up Python
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.pyv }}
cache: pip
cache-dependency-path: |
dvc/pyproject.toml
${{ matrix.plugin }}/setup.cfg
- name: Install plugin + DVC@PR
run: |
pip install --upgrade pip wheel
pip install "./dvc[testing]"
pip install -e "./${{ matrix.plugin }}[tests]"
- name: Run plugin tests
timeout-minutes: 15
working-directory: ${{ matrix.plugin }}
run: pytest -v -n=auto
+30 -53
View File
@@ -1,40 +1,21 @@
name: Tests
on:
pull_request: {}
push: {}
push:
branches: [main]
pull_request:
schedule:
- cron: '5 1 * * *' # every day at 01:05
workflow_dispatch:
env:
DVC_TEST: "true"
HOMEBREW_NO_AUTO_UPDATE: 1
SHELL: /bin/bash
concurrency:
group: ${{ github.workflow }}-${{ github.head_ref || github.run_id }}
cancel-in-progress: true
permissions:
contents: read
jobs:
lint:
timeout-minutes: 10
runs-on: ubuntu-latest
steps:
- name: Cancel Previous Runs
uses: styfle/[email protected]
with:
access_token: ${{ github.token }}
- uses: actions/checkout@v3
with:
fetch-depth: 0
- name: Set up Python 3.8
uses: actions/setup-python@v3
with:
python-version: 3.8
- name: Install requirements
run: |
pip install --upgrade pip setuptools wheel
pip install collective.checkdocs==0.2
pip install ".[dev]" pre-commit
- name: Check README
run: python setup.py checkdocs
- uses: pre-commit/[email protected]
tests:
timeout-minutes: 45
runs-on: ${{ matrix.os }}
@@ -42,48 +23,44 @@ jobs:
fail-fast: false
matrix:
os: [ubuntu-20.04, windows-latest, macos-latest]
pyv: ["3.7", "3.8", "3.9", "3.10"]
pyv: ["3.8", "3.9", "3.10", "3.11"]
steps:
- uses: actions/checkout@v3
with:
fetch-depth: 0
- name: Set up Python
uses: actions/setup-python@v3
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.pyv }}
- name: get pip cache dir
id: pip-cache-dir
run: |
echo "::set-output name=dir::$(pip cache dir)"
- name: set pip cache
id: pip-cache
uses: actions/cache@v3
with:
path: ${{ steps.pip-cache-dir.outputs.dir }}
key: ${{ runner.os }}-pip-${{ hashFiles('setup.cfg') }}
restore-keys: |
${{ runner.os }}-pip-
cache: pip
cache-dependency-path: pyproject.toml
- name: install
if: steps.cache.pip-cache-dir.cache-hit != 'true'
run: |
pip install --upgrade pip setuptools wheel
pip install --upgrade pip wheel
pip install -e ".[dev]"
- uses: pre-commit/[email protected]
- name: run tests
timeout-minutes: 40
run: >-
python -m tests -n=auto
--cov-report=xml --cov-report=term
${{ env.extra_test_args }}
timeout-minutes: 30
run: >
pytest -nauto --timeout=300 --durations=100
--cov --cov-report=xml --cov-report=term
- name: upload coverage report
uses: codecov/codecov-action@v3
with:
file: ./coverage.xml
fail_ci_if_error: false
check:
if: always()
needs: [tests]
runs-on: ubuntu-latest
steps:
- uses: re-actors/alls-green@release/v1
with:
jobs: ${{ toJSON(needs) }}
notify:
if: github.ref == 'refs/heads/main' && failure()
needs:
- lint
- tests
needs: [tests]
runs-on: ubuntu-latest
steps:
- name: Slack Notification
+51 -29
View File
@@ -1,39 +1,66 @@
default_language_version:
python: python3
ci:
skip: [mypy, pylint, dvc-pre-commit]
repos:
- hooks:
- id: black
language_version: python3
repo: https://github.com/ambv/black
rev: 22.3.0
- repo: https://github.com/pre-commit/pre-commit-hooks
rev: v4.2.0
rev: v4.4.0
hooks:
- id: check-added-large-files
- id: check-case-conflict
- id: check-executables-have-shebangs
- id: check-json
- id: check-merge-conflict
exclude: "tests/func/utils/test_strict_yaml.py"
args: ['--assume-in-merge']
- id: check-toml
- id: check-yaml
- hooks:
- id: codespell
args:
- --ignore-words-list
- ba,datas,fo,uptodate,cachable
repo: https://github.com/codespell-project/codespell
rev: v2.1.0
- hooks:
- id: debug-statements
exclude: "dvc/_debug.py"
- id: end-of-file-fixer
- id: mixed-line-ending
- id: sort-simple-yaml
- id: trailing-whitespace
- repo: https://github.com/lovesegfault/beautysh
rev: v6.2.1
hooks:
- id: beautysh
args: ["-i", "2"]
- repo: https://github.com/asottile/pyupgrade
rev: v3.3.1
hooks:
- id: pyupgrade
args:
- --py38-plus
- repo: https://github.com/psf/black
rev: 23.1.0
hooks:
- id: black
- repo: https://github.com/PyCQA/isort
rev: 5.12.0
hooks:
- id: isort
language_version: python3
repo: https://github.com/timothycrosley/isort
rev: 5.10.1
- hooks:
- repo: https://github.com/charliermarsh/ruff-pre-commit
rev: 'v0.0.238'
hooks:
- id: ruff
- repo: https://github.com/codespell-project/codespell
rev: v2.2.2
hooks:
- id: codespell
additional_dependencies: ["tomli"]
- repo: https://github.com/PyCQA/flake8
rev: 6.0.0
hooks:
- id: flake8
language_version: python3
additional_dependencies:
- flake8-bugbear
- flake8-comprehensions
- flake8-debugger
- flake8-string-format
repo: https://gitlab.com/pycqa/flake8
rev: 3.9.2
- flake8-typing-imports
- repo: local
hooks:
- id: mypy
@@ -42,19 +69,14 @@ repos:
files: ^dvc/
language: system
types: [python]
require_serial: true
- id: pylint
name: pylint
entry: pylint
files: ^dvc/
language: system
types: [python]
- hooks:
- args:
- -i
- "2"
id: beautysh
language_version: python3
repo: https://github.com/lovesegfault/beautysh
rev: v6.2.1
require_serial: true
- hooks:
- args:
- git-hook
-1
View File
@@ -74,4 +74,3 @@ available at https://www.contributor-covenant.org/version/1/4/code-of-conduct.ht
For answers to common questions about this code of conduct, see
https://www.contributor-covenant.org/faq
-3
View File
@@ -1,3 +0,0 @@
include LICENSE
recursive-include requirements *.txt
recursive-include dvc/repo/plots/templates *.json
+133 -139
View File
@@ -3,97 +3,114 @@
`Website <https://dvc.org>`_
• `Docs <https://dvc.org/doc>`_
• `Blog <http://blog.dataversioncontrol.com>`_
• `Twitter <https://twitter.com/DVCorg>`_
• `Chat (Community & Support) <https://dvc.org/chat>`_
• `Tutorial <https://dvc.org/doc/get-started>`_
• `Mailing List <https://sweedom.us10.list-manage.com/subscribe/post?u=a08bf93caae4063c4e6a351f6&id=24c0ecc49a>`_
• `Related Technologies <https://dvc.org/doc/user-guide/related-technologies>`_
• `How DVC works`_
• `VS Code Extension`_
• `Installation`_
• `Contributing`_
• `Community and Support`_
|CI| |Maintainability| |Coverage| |Donate| |DOI|
|CI| |Python Version| |Coverage| |VS Code| |DOI|
|PyPI| |Packages| |Brew| |Conda| |Choco| |Snap|
|PyPI| |PyPI Downloads| |Packages| |Brew| |Conda| |Choco| |Snap|
|
**Data Version Control** or **DVC** is an **open-source** tool for data science and machine
learning projects. Key features:
**Data Version Control** or **DVC** is a command line tool and `VS Code Extension`_ to help you develop reproducible machine learning projects:
#. Simple **command line** Git-like experience. Does not require installing and maintaining
any databases. Does not depend on any proprietary online services.
#. **Version** your data and models.
Store them in your cloud storage but keep their version info in your Git repo.
#. Management and versioning of **datasets** and **machine learning
models**. Data can be saved in S3, Google cloud, Azure, Alibaba
cloud, SSH server, HDFS, or even local HDD RAID.
#. **Iterate** fast with lightweight pipelines.
When you make changes, only run the steps impacted by those changes.
#. Makes projects **reproducible** and **shareable**; helping to answer questions about how
a model was built.
#. **Track** experiments in your local Git repo (no servers needed).
#. Helps manage experiments with Git tags/branches and **metrics** tracking.
#. **Compare** any data, code, parameters, model, or performance plots.
**DVC** aims to replace spreadsheet and document sharing tools (such as Excel or Google Docs)
frequently used as both knowledge repositories and team ledgers.
DVC also replaces both ad-hoc scripts to track, move, and deploy different model versions
and ad-hoc data file suffixes and prefixes.
.. contents:: **Contents**
:backlinks: none
How DVC works
=============
We encourage you to read our `Get Started <https://dvc.org/doc/get-started>`_ guide to better understand what DVC
is and how it can fit your scenarios.
The easiest (but not perfect!) *analogy* to describe it: DVC is Git (or Git-LFS to be precise) & Makefiles
made right and tailored specifically for ML and Data Science scenarios.
#. ``Git/Git-LFS`` part - DVC helps store and share data artifacts and models, connecting them with a Git repository.
#. ``Makefile``\ s part - DVC describes how one data or model artifact was built from other data and code.
DVC usually runs along with Git. Git is used as usual to store and version code (including DVC meta-files). DVC helps
to store data and model files seamlessly out of Git, while preserving almost the same user experience as if they
were stored in Git itself. To store and share the data cache, DVC supports multiple remotes - any cloud (S3, Azure,
Google Cloud, etc) or any on-premise network storage (via SSH, for example).
|Flowchart|
The DVC pipelines (computational graph) feature connects code and data together. It is possible to explicitly
specify all steps required to produce a model: input dependencies including data, commands to run,
and output information to be saved. See the quick start section below or
the `Get Started <https://dvc.org/doc/get-started>`_ tutorial to learn more.
#. **Share** experiments and automatically reproduce anyone's experiment.
Quick start
===========
Please read `Get Started <https://dvc.org/doc/get-started>`_ guide for a full version. Common workflow commands include:
Please read our `Command Reference <https://dvc.org/doc/command-reference>`_ for a complete list.
+-----------------------------------+----------------------------------------------------------------------------+
| Step | Command |
+===================================+============================================================================+
| Track data | | ``$ git add train.py`` |
| | | ``$ dvc add images.zip`` |
+-----------------------------------+----------------------------------------------------------------------------+
| Connect code and data by commands | | ``$ dvc run -n prepare -d images.zip -o images/ unzip -q images.zip`` |
| | | ``$ dvc run -n train -d images/ -d train.py -o model.p python train.py`` |
+-----------------------------------+----------------------------------------------------------------------------+
| Make changes and reproduce | | ``$ vi train.py`` |
| | | ``$ dvc repro model.p.dvc`` |
+-----------------------------------+----------------------------------------------------------------------------+
| Share code | | ``$ git add .`` |
| | | ``$ git commit -m 'The baseline model'`` |
| | | ``$ git push`` |
+-----------------------------------+----------------------------------------------------------------------------+
| Share data and ML models | | ``$ dvc remote add myremote -d s3://mybucket/image_cnn`` |
| | | ``$ dvc push`` |
+-----------------------------------+----------------------------------------------------------------------------+
A common CLI workflow includes:
+-----------------------------------+----------------------------------------------------------------------------------------------------+
| Task | Terminal |
+===================================+====================================================================================================+
| Track data | | ``$ git add train.py params.yaml`` |
| | | ``$ dvc add images/`` |
+-----------------------------------+----------------------------------------------------------------------------------------------------+
| Connect code and data | | ``$ dvc stage add -n featurize -d images/ -o features/ python featurize.py`` |
| | | ``$ dvc stage add -n train -d features/ -d train.py -o model.p -M metrics.json python train.py`` |
+-----------------------------------+----------------------------------------------------------------------------------------------------+
| Make changes and experiment | | ``$ dvc exp run -n exp-baseline`` |
| | | ``$ vi train.py`` |
| | | ``$ dvc exp run -n exp-code-change`` |
+-----------------------------------+----------------------------------------------------------------------------------------------------+
| Compare and select experiments | | ``$ dvc exp show`` |
| | | ``$ dvc exp apply exp-baseline`` |
+-----------------------------------+----------------------------------------------------------------------------------------------------+
| Share code | | ``$ git add .`` |
| | | ``$ git commit -m 'The baseline model'`` |
| | | ``$ git push`` |
+-----------------------------------+----------------------------------------------------------------------------------------------------+
| Share data and ML models | | ``$ dvc remote add myremote -d s3://mybucket/image_cnn`` |
| | | ``$ dvc push`` |
+-----------------------------------+----------------------------------------------------------------------------------------------------+
How DVC works
=============
We encourage you to read our `Get Started
<https://dvc.org/doc/get-started>`_ docs to better understand what DVC
does and how it can fit your scenarios.
The closest *analogies* to describe the main DVC features are these:
#. **Git for data**: Store and share data artifacts (like Git-LFS but without a server) and models, connecting them with a Git repository. Data management meets GitOps!
#. **Makefiles** for ML: Describes how data or model artifacts are built from other data and code in a standard format. Now you can version your data pipelines with Git.
#. Local **experiment tracking**: Turn your machine into an ML experiment management platform, and collaborate with others using existing Git hosting (Github, Gitlab, etc.).
Git is employed as usual to store and version code (including DVC meta-files as placeholders for data).
DVC `stores data and model files <https://dvc.org/doc/start/data-management>`_ seamlessly in a cache outside of Git, while preserving almost the same user experience as if they were in the repo.
To share and back up the *data cache*, DVC supports multiple remote storage platforms - any cloud (S3, Azure, Google Cloud, etc.) or on-premise network storage (via SSH, for example).
|Flowchart|
`DVC pipelines <https://dvc.org/doc/start/data-management/data-pipelines>`_ (computational graphs) connect code and data together.
They specify all steps required to produce a model: input dependencies including code, data, commands to run; and output information to be saved.
Last but not least, `DVC Experiment Versioning <https://dvc.org/doc/start/experiments>`_ lets you prepare and run a large number of experiments.
Their results can be filtered and compared based on hyperparameters and metrics, and visualized with multiple plots.
.. _`VS Code Extension`:
Visual Studio Code Extension
============================
|VS Code|
To use DVC as a GUI right from your VS Code IDE, install the `DVC Extension <https://marketplace.visualstudio.com/items?itemName=Iterative.dvc>`_ from the Marketplace.
It currently features experiment tracking and data management, and more features (data pipeline support, etc.) are coming soon!
|VS Code Extension Overview|
Note: You'll have to install core DVC on your system separately (as detailed
below). The Extension will guide you if needed.
Installation
============
There are four options to install DVC: ``pip``, Homebrew, Conda (Anaconda) or an OS-specific package.
There are several ways to install DVC: in VS Code; using ``snap``, ``choco``, ``brew``, ``conda``, ``pip``; or with an OS-specific package.
Full instructions are `available here <https://dvc.org/doc/get-started/install>`_.
Snap (Snapcraft/Linux)
----------------------
Snapcraft (Linux)
-----------------
|Snap|
@@ -102,11 +119,10 @@ Snap (Snapcraft/Linux)
snap install dvc --classic
This corresponds to the latest tagged release.
Add ``--beta`` for the latest tagged release candidate,
or ``--edge`` for the latest ``main`` version.
Add ``--beta`` for the latest tagged release candidate, or ``--edge`` for the latest ``main`` version.
Choco (Chocolatey/Windows)
--------------------------
Chocolatey (Windows)
--------------------
|Choco|
@@ -114,8 +130,8 @@ Choco (Chocolatey/Windows)
choco install dvc
Brew (Homebrew/Mac OS)
----------------------
Brew (mac OS)
-------------
|Brew|
@@ -123,8 +139,8 @@ Brew (Homebrew/Mac OS)
brew install dvc
Conda (Anaconda)
----------------
Anaconda (Any platform)
-----------------------
|Conda|
@@ -133,11 +149,10 @@ Conda (Anaconda)
conda install -c conda-forge mamba # installs much faster than conda
mamba install -c conda-forge dvc
Depending on the remote storage type you plan to use to keep and share your data, you might need to
install optional dependencies: `dvc-s3`, `dvc-azure`, `dvc-gdrive`, `dvc-gs`, `dvc-oss`, `dvc-ssh`.
Depending on the remote storage type you plan to use to keep and share your data, you might need to install optional dependencies: `dvc-s3`, `dvc-azure`, `dvc-gdrive`, `dvc-gs`, `dvc-oss`, `dvc-ssh`.
pip (PyPI)
----------
PyPI (Python)
-------------
|PyPI|
@@ -145,10 +160,8 @@ pip (PyPI)
pip install dvc
Depending on the remote storage type you plan to use to keep and share your data, you might need to specify
one of the optional dependencies: ``s3``, ``gs``, ``azure``, ``oss``, ``ssh``. Or ``all`` to include them all.
The command should look like this: ``pip install dvc[s3]`` (in this case AWS S3 dependencies such as ``boto3``
will be installed automatically).
Depending on the remote storage type you plan to use to keep and share your data, you might need to specify one of the optional dependencies: ``s3``, ``gs``, ``azure``, ``oss``, ``ssh``. Or ``all`` to include them all.
The command should look like this: ``pip install 'dvc[s3]'`` (in this case AWS S3 dependencies such as ``boto3`` will be installed automatically).
To install the development version, run:
@@ -156,88 +169,58 @@ To install the development version, run:
pip install git+git://github.com/iterative/dvc
Package
-------
Package (Platform-specific)
---------------------------
|Packages|
Self-contained packages for Linux, Windows, and Mac are available. The latest version of the packages
can be found on the GitHub `releases page <https://github.com/iterative/dvc/releases>`_.
Self-contained packages for Linux, Windows, and Mac are available.
The latest version of the packages can be found on the GitHub `releases page <https://github.com/iterative/dvc/releases>`_.
Ubuntu / Debian (deb)
^^^^^^^^^^^^^^^^^^^^^
.. code-block:: bash
sudo wget https://dvc.org/deb/dvc.list -O /etc/apt/sources.list.d/dvc.list
sudo apt-get update
sudo apt-get install dvc
wget -qO - https://dvc.org/deb/iterative.asc | sudo apt-key add -
sudo apt update
sudo apt install dvc
Fedora / CentOS (rpm)
^^^^^^^^^^^^^^^^^^^^^
.. code-block:: bash
sudo wget https://dvc.org/rpm/dvc.repo -O /etc/yum.repos.d/dvc.repo
sudo rpm --import https://dvc.org/rpm/iterative.asc
sudo yum update
sudo yum install dvc
Comparison to related technologies
==================================
#. Data Engineering tools such as `AirFlow <https://airflow.apache.org/>`_,
`Luigi <https://github.com/spotify/luigi>`_, and others - in DVC data,
model and ML pipelines represent a single ML project focused on data
scientists' experience. Data engineering tools orchestrate multiple data
projects and focus on efficient execution. A DVC project can be used from
existing data pipelines as a single execution step.
#. `Git-annex <https://git-annex.branchable.com/>`_ - DVC uses the idea of storing the content of large files (which should
not be in a Git repository) in a local key-value store, and uses file hardlinks/symlinks instead of
copying/duplicating files.
#. `Git-LFS <https://git-lfs.github.com/>`_ - DVC is compatible with many
remote storage services (S3, Google Cloud, Azure, SSH, etc). DVC also
uses reflinks or hardlinks to avoid copy operations on checkouts; thus
handling large data files much more efficiently.
#. Makefile (and analogues including ad-hoc scripts) - DVC tracks
dependencies (in a directed acyclic graph).
#. `Workflow Management Systems <https://en.wikipedia.org/wiki/Workflow_management_system>`_ - DVC is a workflow
management system designed specifically to manage machine learning experiments. DVC is built on top of Git.
#. `DAGsHub <https://dagshub.com/>`_ - online service to host DVC
projects. It provides a useful UI around DVC repositories and integrates
other tools.
#. `DVC Studio <https://studio.iterative.ai/>`_ - official online
platform for DVC projects. It can be used to manage data and models, run
and track experiments, and visualize and share results. Also, it
integrates with `CML (CI/CD for ML) <https://cml.dev/>`__ for training
models in the cloud or Kubernetes.
Contributing
============
|Maintainability| |Donate|
|Maintainability|
Contributions are welcome! Please see our `Contributing Guide <https://dvc.org/doc/user-guide/contributing/core>`_ for more
details. Thanks to all our contributors!
Contributions are welcome!
Please see our `Contributing Guide <https://dvc.org/doc/user-guide/contributing/core>`_ for more details.
Thanks to all our contributors!
|Contribs|
Mailing List
============
Community and Support
=====================
Want to stay up to date? Want to help improve DVC by participating in our occasional polls? Subscribe to our `mailing list <https://sweedom.us10.list-manage.com/subscribe/post?u=a08bf93caae4063c4e6a351f6&id=24c0ecc49a>`_. No spam, really low traffic.
* `Twitter <https://twitter.com/DVCorg>`_
* `Forum <https://discuss.dvc.org/>`_
* `Discord Chat <https://dvc.org/chat>`_
* `Email <mailto:[email protected]>`_
* `Mailing List <https://sweedom.us10.list-manage.com/subscribe/post?u=a08bf93caae4063c4e6a351f6&id=24c0ecc49a>`_
Copyright
=========
This project is distributed under the Apache license version 2.0 (see the LICENSE file in the project root).
By submitting a pull request to this project, you agree to license your contribution under the Apache license version
2.0 to this project.
By submitting a pull request to this project, you agree to license your contribution under the Apache license version 2.0 to this project.
Citation
========
@@ -254,6 +237,9 @@ Barrak, A., Eghan, E.E. and Adams, B. `On the Co-evolution of ML Pipelines and S
:target: https://dvc.org
:alt: DVC logo
.. |VS Code Extension Overview| image:: https://raw.githubusercontent.com/iterative/vscode-dvc/main/extension/docs/overview.gif
:alt: DVC Extension for VS Code
.. |CI| image:: https://github.com/iterative/dvc/workflows/Tests/badge.svg?branch=main
:target: https://github.com/iterative/dvc/actions
:alt: GHA Tests
@@ -262,14 +248,14 @@ Barrak, A., Eghan, E.E. and Adams, B. `On the Co-evolution of ML Pipelines and S
:target: https://codeclimate.com/github/iterative/dvc
:alt: Code Climate
.. |Python Version| image:: https://img.shields.io/pypi/pyversions/dvc
:target: https://pypi.org/project/dvc
:alt: Python Version
.. |Coverage| image:: https://codecov.io/gh/iterative/dvc/branch/main/graph/badge.svg
:target: https://codecov.io/gh/iterative/dvc
:alt: Codecov
.. |Donate| image:: https://img.shields.io/badge/patreon-donate-green.svg?logo=patreon
:target: https://www.patreon.com/DVCorg/overview
:alt: Donate
.. |Snap| image:: https://img.shields.io/badge/snap-install-82BEA0.svg?logo=snapcraft
:target: https://snapcraft.io/dvc
:alt: Snapcraft
@@ -290,6 +276,10 @@ Barrak, A., Eghan, E.E. and Adams, B. `On the Co-evolution of ML Pipelines and S
:target: https://pypi.org/project/dvc
:alt: PyPI
.. |PyPI Downloads| image:: https://img.shields.io/pypi/dm/dvc.svg?color=blue&label=Downloads&logo=pypi&logoColor=gold
:target: https://pypi.org/project/dvc
:alt: PyPI Downloads
.. |Packages| image:: https://img.shields.io/github/v/release/iterative/dvc?label=deb|pkg|rpm|exe&logo=GitHub
:target: https://github.com/iterative/dvc/releases/latest
:alt: deb|pkg|rpm|exe
@@ -305,3 +295,7 @@ Barrak, A., Eghan, E.E. and Adams, B. `On the Co-evolution of ML Pipelines and S
.. |Contribs| image:: https://contrib.rocks/image?repo=iterative/dvc
:target: https://github.com/iterative/dvc/graphs/contributors
:alt: Contributors
.. |VS Code| image:: https://img.shields.io/visual-studio-marketplace/v/Iterative.dvc?color=blue&label=VSCode&logo=visualstudiocode&logoColor=blue
:target: https://marketplace.visualstudio.com/items?itemName=Iterative.dvc
:alt: VS Code Extension
-3
View File
@@ -1,3 +0,0 @@
#!/bin/bash
PYTHONPATH=$DVC_HOME python -m dvc $@
-3
View File
@@ -1,3 +0,0 @@
@echo OFF
set PYTHONPATH=%DVC_HOME%
python -m dvc %*
+1 -1
View File
@@ -4,6 +4,6 @@ DVC
Make your data science projects reproducible and shareable.
"""
import dvc.logger
from dvc.version import __version__ # noqa: F401
from dvc.version import __version__, version_tuple # noqa: F401
dvc.logger.setup()
+101 -33
View File
@@ -1,24 +1,26 @@
from contextlib import ExitStack, contextmanager
from datetime import datetime
from typing import TYPE_CHECKING, Callable, Union
from typing import TYPE_CHECKING, Callable, Optional, Union
if TYPE_CHECKING:
from argparse import Namespace
from types import FrameType
@contextmanager
def viztracer_profile(
path: Union[Callable[[], str], str],
max_stack_depth: int = -1,
depth: int = -1,
log_async: bool = False,
):
try:
import viztracer # pylint: disable=import-error
except ImportError:
print("Failed to run profiler, viztracer is not installed")
print("Failed to run profiler, viztracer is not installed") # noqa: T201
yield
return
tracer = viztracer.VizTracer(max_stack_depth=max_stack_depth)
tracer = viztracer.VizTracer(max_stack_depth=depth, log_async=log_async)
tracer.start()
yield
@@ -29,12 +31,14 @@ def viztracer_profile(
@contextmanager
def yappi_profile(
path: Union[Callable[[], str], str] = None, wall_clock: bool = True
path: Optional[Union[Callable[[], str], str]] = None,
wall_clock: Optional[bool] = True,
separate_threads: Optional[bool] = False,
):
try:
import yappi # pylint: disable=import-error
except ImportError:
print("Failed to run profiler, yappi is not installed")
print("Failed to run profiler, yappi is not installed") # noqa: T201
yield
return
@@ -44,14 +48,26 @@ def yappi_profile(
yield
yappi.stop()
# pylint:disable=no-member
if path:
stats = yappi.get_func_stats()
fpath = path() if callable(path) else path
stats.save(fpath, "callgrind")
threads = yappi.get_thread_stats()
stats = {}
if separate_threads:
for thread in threads:
ctx_id = thread.id
stats[ctx_id] = yappi.get_func_stats(ctx_id=ctx_id)
else:
yappi.get_func_stats().print_all()
yappi.get_thread_stats().print_all()
stats[None] = yappi.get_func_stats()
fpath = path() if callable(path) else path
for ctx_id, st in stats.items():
if fpath:
out = f"{fpath}-{ctx_id}" if ctx_id is not None else fpath
st.save(out, type="callgrind")
else:
if ctx_id is not None:
print(f"\nThread {ctx_id}") # noqa: T201
st.print_all() # pylint:disable=no-member
if ctx_id is None:
threads.print_all() # pylint:disable=no-member
yappi.clear_stats()
@@ -62,7 +78,7 @@ def instrument(html_output=False):
try:
from pyinstrument import Profiler # pylint: disable=import-error
except ImportError:
print("Failed to run profiler, pyinstrument is not installed")
print("Failed to run profiler, pyinstrument is not installed") # noqa: T201
yield
return
@@ -75,11 +91,11 @@ def instrument(html_output=False):
if html_output:
profiler.open_in_browser()
return
print(profiler.output_text(unicode=True, color=True))
print(profiler.output_text(unicode=True, color=True)) # noqa: T201
@contextmanager
def profile(dump_path: str = None):
def profile(dump_path: Optional[str] = None):
"""Run a cprofile"""
import cProfile
@@ -103,14 +119,49 @@ def debug():
try:
import ipdb as pdb # noqa: T100, pylint: disable=import-error
except ImportError:
import pdb # noqa: T100
import pdb # type: ignore[no-redef] # noqa: T100
pdb.post_mortem()
raise # prevent from jumping ahead
def _sigshow(_, frame: Optional["FrameType"]) -> None:
import sys
from shutil import get_terminal_size
from traceback import format_stack
lines = "\u2015" * get_terminal_size().columns
stack = format_stack(frame)
print(lines, "\n", *stack, lines, sep="", file=sys.stderr) # noqa: T201
@contextmanager
def debugtools(args: "Namespace" = None, **kwargs):
def show_stack():
r"""Show stack trace on SIGQUIT (Ctrl-\) or SIGINFO (Ctrl-T on macOS)."""
import signal
import sys
if sys.platform != "win32":
signal.signal(signal.SIGQUIT, _sigshow)
try:
signal.signal(signal.SIGINFO, _sigshow) # only available on macOS
except AttributeError:
pass
yield
def _get_path_func(tool: str, ext: str):
fmt = f"{tool}.dvc-{{now:%Y%m%d}}_{{now:%H%M%S}}.{ext}"
def func(now: Optional["datetime"] = None) -> str:
return fmt.format(now=now or datetime.now())
return func
@contextmanager
def debugtools(args: Optional["Namespace"] = None, **kwargs):
kw = vars(args) if args else {}
kw.update(kwargs)
@@ -121,42 +172,59 @@ def debugtools(args: "Namespace" = None, **kwargs):
stack.enter_context(profile(kw.get("cprofile_dump")))
if kw.get("instrument") or kw.get("instrument_open"):
stack.enter_context(instrument(kw.get("instrument_open", False)))
if kw.get("show_stack", False):
stack.enter_context(show_stack())
if kw.get("yappi"):
output = "callgrind.dvc-{0:%Y%m%d}_{0:%H%M%S}.out"
path_func = _get_path_func("callgrind", "out")
stack.enter_context(
yappi_profile(path=lambda: output.format(datetime.now()))
)
if kw.get("viztracer") or kw.get("viztracer_depth"):
output = "viztracer.dvc-{0:%Y%m%d}_{0:%H%M%S}.json"
stack.enter_context(
viztracer_profile(
path=lambda: output.format(datetime.now()),
max_stack_depth=kw.get("viztracer_depth") or -1,
yappi_profile(
path=path_func,
separate_threads=kw.get("yappi_separate_threads"),
)
)
if (
kw.get("viztracer")
or kw.get("viztracer_depth")
or kw.get("viztracer_async")
):
path_func = _get_path_func("viztracer", "json")
depth = kw.get("viztracer_depth") or -1
log_async = kw.get("viztracer_async") or False
prof = viztracer_profile(path=path_func, depth=depth, log_async=log_async)
stack.enter_context(prof)
yield
def add_debugging_flags(parser):
from argparse import SUPPRESS
parser.add_argument("--cprofile", action="store_true", default=False, help=SUPPRESS)
parser.add_argument("--yappi", action="store_true", default=False, help=SUPPRESS)
parser.add_argument(
"--cprofile", action="store_true", default=False, help=SUPPRESS
)
parser.add_argument(
"--yappi", action="store_true", default=False, help=SUPPRESS
"--yappi-separate-threads",
action="store_true",
default=False,
help=SUPPRESS,
)
parser.add_argument(
"--viztracer", action="store_true", default=False, help=SUPPRESS
)
parser.add_argument("--viztracer-depth", type=int, help=SUPPRESS)
parser.add_argument("--cprofile-dump", help=SUPPRESS)
parser.add_argument(
"--pdb", action="store_true", default=False, help=SUPPRESS
"--viztracer-async", action="store_true", default=False, help=SUPPRESS
)
parser.add_argument("--cprofile-dump", help=SUPPRESS)
parser.add_argument("--pdb", action="store_true", default=False, help=SUPPRESS)
parser.add_argument(
"--instrument", action="store_true", default=False, help=SUPPRESS
)
parser.add_argument(
"--instrument-open", action="store_true", default=False, help=SUPPRESS
)
parser.add_argument(
"--show-stack",
"--ss",
action="store_true",
default=False,
help=SUPPRESS,
)
+13 -47
View File
@@ -50,7 +50,7 @@ def is_enabled():
Config(validate=False).get("core", {}).get("analytics", "true")
)
logger.debug("Analytics is {}abled.".format("en" if enabled else "dis"))
logger.debug("Analytics is %sabled.", "en" if enabled else "dis")
return enabled
@@ -82,10 +82,9 @@ def send(path):
def _scm_in_use():
from scmrepo.noscm import NoSCM
from dvc.exceptions import NotDvcRepoError
from dvc.repo import Repo
from dvc.scm import NoSCM
from .scm import SCM, SCMError
@@ -102,15 +101,24 @@ def _runtime_info():
"""
Gather information from the environment where DVC runs to fill a report.
"""
from iterative_telemetry import _generate_ci_id, find_or_create_user_id
from dvc import __version__
from dvc.utils import is_binary
ci_id = _generate_ci_id()
if ci_id:
group_id, user_id = ci_id
else:
group_id, user_id = None, find_or_create_user_id()
return {
"dvc_version": __version__,
"is_binary": is_binary(),
"scm_class": _scm_in_use(),
"system_info": _system_info(),
"user_id": _find_or_create_user_id(),
"user_id": user_id,
"group_id": group_id,
}
@@ -123,7 +131,7 @@ def _system_info():
system = platform.system()
if system == "Windows":
version = sys.getwindowsversion()
version = sys.getwindowsversion() # type: ignore[attr-defined]
return {
"os": "windows",
@@ -146,45 +154,3 @@ def _system_info():
# We don't collect data for any other system.
raise NotImplementedError
def _find_or_create_user_id():
"""
The user's ID is stored on a file under the global config directory.
The file should contain a JSON with a "user_id" key:
{"user_id": "16fd2706-8baf-433b-82eb-8c7fada847da"}
IDs are generated randomly with UUID.
"""
import uuid
from dvc.config import Config
from dvc.lock import Lock, LockError
from dvc.utils.fs import makedirs
config_dir = Config.get_dir("global")
fname = os.path.join(config_dir, "user_id")
lockfile = os.path.join(config_dir, "user_id.lock")
# Since the `fname` and `lockfile` are under the global config,
# we need to make sure such directory exist already.
makedirs(config_dir, exist_ok=True)
try:
with Lock(lockfile):
try:
with open(fname, encoding="utf-8") as fobj:
user_id = json.load(fobj)["user_id"]
except (FileNotFoundError, ValueError, KeyError):
user_id = str(uuid.uuid4())
with open(fname, "w", encoding="utf-8") as fobj:
json.dump({"user_id": user_id}, fobj)
return user_id
except LockError:
logger.debug(f"Failed to acquire '{lockfile}'")
+35
View File
@@ -0,0 +1,35 @@
from dataclasses import asdict, dataclass, field, fields
from typing import Any, ClassVar, Dict, List, Optional
from funcy import compact
@dataclass
class Annotation:
PARAM_DESC: ClassVar[str] = "desc"
PARAM_TYPE: ClassVar[str] = "type"
PARAM_LABELS: ClassVar[str] = "labels"
PARAM_META: ClassVar[str] = "meta"
desc: Optional[str] = None
type: Optional[str] = None # noqa: A003
labels: List[str] = field(default_factory=list)
meta: Dict[str, Any] = field(default_factory=dict)
def update(self, **kwargs) -> "Annotation":
for attr, value in kwargs.items():
if value and hasattr(self, attr):
setattr(self, attr, value)
return self
def to_dict(self) -> Dict[str, str]:
return compact(asdict(self))
ANNOTATION_FIELDS = [field.name for field in fields(Annotation)]
ANNOTATION_SCHEMA = {
Annotation.PARAM_DESC: str,
Annotation.PARAM_TYPE: str,
Annotation.PARAM_LABELS: [str],
Annotation.PARAM_META: object,
}
-123
View File
@@ -1,123 +0,0 @@
import os
from contextlib import _GeneratorContextManager as GCM
from funcy import reraise
from dvc.exceptions import OutputNotFoundError, PathMissingError
from dvc.repo import Repo
def get_url(path, repo=None, rev=None, remote=None):
"""
Returns the URL to the storage location of a data file or directory tracked
in a DVC repo. For Git repos, HEAD is used unless a rev argument is
supplied. The default remote is tried unless a remote argument is supplied.
Raises OutputNotFoundError if the file is not tracked by DVC.
NOTE: This function does not check for the actual existence of the file or
directory in the remote storage.
"""
with Repo.open(repo, rev=rev, subrepos=True, uninitialized=True) as _repo:
with reraise(FileNotFoundError, PathMissingError(path, repo)):
info = _repo.repo_fs.info(path)
dvc_info = info.get("dvc_info")
if not dvc_info:
raise OutputNotFoundError(path, repo)
dvc_repo = info["repo"]
md5 = dvc_info["md5"]
return dvc_repo.cloud.get_url_for(remote, checksum=md5)
def open( # noqa, pylint: disable=redefined-builtin
path, repo=None, rev=None, remote=None, mode="r", encoding=None
):
"""
Open file in the supplied path tracked in a repo (both DVC projects and
plain Git repos are supported). For Git repos, HEAD is used unless a rev
argument is supplied. The default remote is tried unless a remote argument
is supplied. It may only be used as a context manager:
with dvc.api.open(
'path/to/file',
repo='https://example.com/url/to/repo'
) as fd:
# ... Handle file object fd
"""
args = (path,)
kwargs = {
"repo": repo,
"remote": remote,
"rev": rev,
"mode": mode,
"encoding": encoding,
}
return _OpenContextManager(_open, args, kwargs)
class _OpenContextManager(GCM):
def __init__(
self, func, args, kwds
): # pylint: disable=super-init-not-called
self.gen = func(*args, **kwds)
self.func, self.args, self.kwds = func, args, kwds
def __getattr__(self, name):
raise AttributeError(
"dvc.api.open() should be used in a with statement."
)
def _open(path, repo=None, rev=None, remote=None, mode="r", encoding=None):
with Repo.open(repo, rev=rev, subrepos=True, uninitialized=True) as _repo:
with _repo.open_by_relpath(
path, remote=remote, mode=mode, encoding=encoding
) as fd:
yield fd
def read(path, repo=None, rev=None, remote=None, mode="r", encoding=None):
"""
Returns the contents of a tracked file (by DVC or Git). For Git repos, HEAD
is used unless a rev argument is supplied. The default remote is tried
unless a remote argument is supplied.
"""
with open(
path, repo=repo, rev=rev, remote=remote, mode=mode, encoding=encoding
) as fd:
return fd.read()
def make_checkpoint():
"""
Signal DVC to create a checkpoint experiment.
If the current process is being run from DVC, this function will block
until DVC has finished creating the checkpoint. Otherwise, this function
will return immediately.
"""
import builtins
from time import sleep
from dvc.env import DVC_CHECKPOINT, DVC_ROOT
from dvc.stage.monitor import CheckpointTask
if os.getenv(DVC_CHECKPOINT) is None:
return
root_dir = os.getenv(DVC_ROOT, Repo.find_root())
signal_file = os.path.join(
root_dir, Repo.DVC_DIR, "tmp", CheckpointTask.SIGNAL_FILE
)
with builtins.open(signal_file, "w", encoding="utf-8") as fobj:
# NOTE: force flushing/writing empty file to disk, otherwise when
# run in certain contexts (pytest) file may not actually be written
fobj.write("")
fobj.flush()
os.fsync(fobj.fileno())
while os.path.exists(signal_file):
sleep(0.1)
+15
View File
@@ -0,0 +1,15 @@
from dvc.fs.dvc import _DVCFileSystem as DVCFileSystem
from .data import open # pylint: disable=redefined-builtin
from .data import get_url, read
from .experiments import make_checkpoint
from .params import params_show
__all__ = [
"get_url",
"make_checkpoint",
"open",
"params_show",
"read",
"DVCFileSystem",
]
+213
View File
@@ -0,0 +1,213 @@
from contextlib import _GeneratorContextManager as GCM
from typing import Optional
from funcy import reraise
from dvc.exceptions import OutputNotFoundError, PathMissingError
from dvc.repo import Repo
def get_url(path, repo=None, rev=None, remote=None):
"""
Returns the URL to the storage location of a data file or directory tracked
in a DVC repo. For Git repos, HEAD is used unless a rev argument is
supplied. The default remote is tried unless a remote argument is supplied.
Raises OutputNotFoundError if the file is not tracked by DVC.
NOTE: This function does not check for the actual existence of the file or
directory in the remote storage.
"""
with Repo.open(repo, rev=rev, subrepos=True, uninitialized=True) as _repo:
fs_path = _repo.dvcfs.from_os_path(path)
with reraise(FileNotFoundError, PathMissingError(path, repo)):
info = _repo.dvcfs.info(fs_path)
dvc_info = info.get("dvc_info")
if not dvc_info:
raise OutputNotFoundError(path, repo)
dvc_repo = info["repo"] # pylint: disable=unsubscriptable-object
md5 = dvc_info["md5"]
return dvc_repo.cloud.get_url_for(remote, checksum=md5)
class _OpenContextManager(GCM):
def __init__(self, func, args, kwds): # pylint: disable=super-init-not-called
self.gen = func(*args, **kwds)
self.func, self.args, self.kwds = ( # type: ignore[assignment]
func,
args,
kwds,
)
def __getattr__(self, name):
raise AttributeError("dvc.api.open() should be used in a with statement.")
def open( # noqa, pylint: disable=redefined-builtin
path: str,
repo: Optional[str] = None,
rev: Optional[str] = None,
remote: Optional[str] = None,
mode: str = "r",
encoding: Optional[str] = None,
):
"""
Opens a file tracked in a DVC project.
This function may only be used as a context manager (using the `with`
keyword, as shown in the examples).
This function makes a direct connection to the remote storage, so the file
contents can be streamed. Your code can process the data buffer as it's
streamed, which optimizes memory usage.
Note:
Use dvc.api.read() to load the complete file contents
in a single function call, no context manager involved.
Neither function utilizes disc space.
Args:
path (str): location and file name of the target to open,
relative to the root of `repo`.
repo (str, optional): location of the DVC project or Git Repo.
Defaults to the current DVC project (found by walking up from the
current working directory tree).
It can be a URL or a file system path.
Both HTTP and SSH protocols are supported for online Git repos
(e.g. [user@]server:project.git).
rev (str, optional): Any `Git revision`_ such as a branch or tag name,
a commit hash or a dvc experiment name.
Defaults to HEAD.
If `repo` is not a Git repo, this option is ignored.
remote (str, optional): Name of the `DVC remote`_ used to form the
returned URL string.
Defaults to the `default remote`_ of `repo`.
For local projects, the cache is tried before the default remote.
mode (str, optional): Specifies the mode in which the file is opened.
Defaults to "r" (read).
Mirrors the namesake parameter in builtin `open()`_.
Only reading `mode` is supported.
encoding(str, optional): `Codec`_ used to decode the file contents.
Defaults to None.
This should only be used in text mode.
Mirrors the namesake parameter in builtin `open()`_.
Returns:
_OpenContextManager: A context manager that generatse a corresponding
`file object`_.
The exact type of file object depends on the mode used.
For more details, please refer to Python's `open()`_ built-in,
which is used under the hood.
Raises:
AttributeError: If this method is not used as a context manager.
ValueError: If non-read `mode` is used.
Examples:
- Use data or models from a DVC repository.
Any file tracked in a DVC project (and stored remotely) can be
processed directly in your Python code with this API.
For example, an XML file tracked in a public DVC repo on GitHub can be
processed like this:
>>> from xml.sax import parse
>>> import dvc.api
>>> from mymodule import mySAXHandler
>>> with dvc.api.open(
... 'get-started/data.xml',
... repo='https://github.com/iterative/dataset-registry'
... ) as fd:
... parse(fd, mySAXHandler)
We use a SAX XML parser here because dvc.api.open() is able to stream
the data from remote storage.
The mySAXHandler object should handle the event-driven parsing of the
document in this case.
This increases the performance of the code (minimizing memory usage),
and is typically faster than loading the whole data into memory.
- Accessing private repos
This is just a matter of using the right repo argument, for example an
SSH URL (requires that the credentials are configured locally):
>>> import dvc.api
>>> with dvc.api.open(
... 'features.dat',
... repo='[email protected]:path/to/repo.git'
... ) as fd:
... # ... Process 'features'
... pass
- Use different versions of data
Any git revision (see `rev`) can be accessed programmatically.
For example, if your DVC repo has tagged releases of a CSV dataset:
>>> import csv
>>> import dvc.api
>>> with dvc.api.open(
... 'clean.csv',
... rev='v1.1.0'
... ) as fd:
... reader = csv.reader(fd)
... # ... Process 'clean' data from version 1.1.0
.. _Git revision:
https://git-scm.com/docs/revisions
.. _DVC remote:
https://dvc.org/doc/command-reference/remote
.. _default remote:
https://dvc.org/doc/command-reference/remote/default
.. _open():
https://docs.python.org/3/library/functions.html#open
.. _Codec:
https://docs.python.org/3/library/codecs.html#standard-encodings
.. _file object:
https://docs.python.org/3/glossary.html#term-file-object
"""
if "r" not in mode:
raise ValueError("Only reading `mode` is supported.")
args = (path,)
kwargs = {
"repo": repo,
"remote": remote,
"rev": rev,
"mode": mode,
"encoding": encoding,
}
return _OpenContextManager(_open, args, kwargs)
def _open(path, repo=None, rev=None, remote=None, mode="r", encoding=None):
with Repo.open(repo, rev=rev, subrepos=True, uninitialized=True) as _repo:
with _repo.open_by_relpath(
path, remote=remote, mode=mode, encoding=encoding
) as fd:
yield fd
def read(path, repo=None, rev=None, remote=None, mode="r", encoding=None):
"""
Returns the contents of a tracked file (by DVC or Git). For Git repos, HEAD
is used unless a rev argument is supplied. The default remote is tried
unless a remote argument is supplied.
"""
with open(
path, repo=repo, rev=rev, remote=remote, mode=mode, encoding=encoding
) as fd:
return fd.read()
+33
View File
@@ -0,0 +1,33 @@
import builtins
import os
from time import sleep
from dvc.env import DVC_CHECKPOINT, DVC_ROOT
from dvc.repo import Repo
from dvc.stage.monitor import CheckpointTask
def make_checkpoint():
"""
Signal DVC to create a checkpoint experiment.
If the current process is being run from DVC, this function will block
until DVC has finished creating the checkpoint. Otherwise, this function
will return immediately.
"""
if os.getenv(DVC_CHECKPOINT) is None:
return
root_dir = os.getenv(DVC_ROOT, Repo.find_root())
signal_file = os.path.join(
root_dir, Repo.DVC_DIR, "tmp", CheckpointTask.SIGNAL_FILE
)
with builtins.open(signal_file, "w", encoding="utf-8") as fobj:
# NOTE: force flushing/writing empty file to disk, otherwise when
# run in certain contexts (pytest) file may not actually be written
fobj.write("")
fobj.flush()
os.fsync(fobj.fileno())
while os.path.exists(signal_file):
sleep(0.1)
+279
View File
@@ -0,0 +1,279 @@
import typing
from collections import Counter
from typing import Dict, Iterable, Optional, Union
from funcy import first
from dvc.exceptions import DvcException
from dvc.repo import Repo
def params_show(
*targets: str,
repo: Optional[str] = None,
stages: Optional[Union[str, Iterable[str]]] = None,
rev: Optional[str] = None,
deps: bool = False,
) -> Dict:
"""Get parameters tracked in `repo`.
Without arguments, this function will retrieve all params from all tracked
parameter files, for the current working tree.
See the options below to restrict the parameters retrieved.
Args:
*targets (str, optional): Names of the parameter files to retrieve
params from. For example, "params.py, myparams.toml".
If no `targets` are provided, all parameter files tracked in `dvc.yaml`
will be used.
Note that targets don't necessarily have to be defined in `dvc.yaml`.
repo (str, optional): location of the DVC repository.
Defaults to the current project (found by walking up from the
current working directory tree).
It can be a URL or a file system path.
Both HTTP and SSH protocols are supported for online Git repos
(e.g. [user@]server:project.git).
stages (Union[str, Iterable[str]], optional): Name or names of the
stages to retrieve parameters from.
Defaults to `None`.
If `None`, all parameters from all stages will be retrieved.
If this method is called from a different location to the one where
the `dvc.yaml` is found, the relative path to the `dvc.yaml` must
be provided as a prefix with the syntax `{relpath}:{stage}`.
For example: `subdir/dvc.yaml:stage-0` or `../dvc.yaml:stage-1`.
rev (str, optional): Name of the `Git revision`_ to retrieve parameters
from.
Defaults to `None`.
An example of git revision can be a branch or tag name, a commit
hash or a dvc experiment name.
If `repo` is not a Git repo, this option is ignored.
If `None`, the current working tree will be used.
deps (bool, optional): Whether to retrieve only parameters that are
stage dependencies or not.
Defaults to `False`.
Returns:
Dict: See Examples below.
Raises:
DvcException: If no params are found in `repo`.
Examples:
- No arguments.
Working on https://github.com/iterative/example-get-started
>>> import json
>>> import dvc.api
>>> params = dvc.api.params_show()
>>> print(json.dumps(params, indent=4))
{
"prepare": {
"split": 0.2,
"seed": 20170428
},
"featurize": {
"max_features": 200,
"ngrams": 2
},
"train": {
"seed": 20170428,
"n_est": 50,
"min_split": 0.01
}
}
---
- Filtering with `stages`.
Working on https://github.com/iterative/example-get-started
`stages` can a single string:
>>> import json
>>> import dvc.api
>>> params = dvc.api.params_show(stages="prepare")
>>> print(json.dumps(params, indent=4))
{
"prepare": {
"split": 0.2,
"seed": 20170428
}
}
Or an iterable of strings:
>>> import json
>>> import dvc.api
>>> params = dvc.api.params_show(stages=["prepare", "train"])
>>> print(json.dumps(params, indent=4))
{
"prepare": {
"split": 0.2,
"seed": 20170428
},
"train": {
"seed": 20170428,
"n_est": 50,
"min_split": 0.01
}
}
---
- Using `rev`.
Working on https://github.com/iterative/example-get-started
>>> import json
>>> import dvc.api
>>> params = dvc.api.params_show(rev="tune-hyperparams")
>>> print(json.dumps(params, indent=4))
{
"prepare": {
"split": 0.2,
"seed": 20170428
},
"featurize": {
"max_features": 200,
"ngrams": 2
},
"train": {
"seed": 20170428,
"n_est": 100,
"min_split": 8
}
}
---
- Using `targets`.
Working on `multi-params-files` folder of
https://github.com/iterative/pipeline-conifguration
You can pass a single target:
>>> import json
>>> import dvc.api
>>> params = dvc.api.params_show("params.yaml")
>>> print(json.dumps(params, indent=4))
{
"run_mode": "prod",
"configs": {
"dev": "configs/params_dev.yaml",
"test": "configs/params_test.yaml",
"prod": "configs/params_prod.yaml"
},
"evaluate": {
"dataset": "micro",
"size": 5000,
"metrics": ["f1", "roc-auc"],
"metrics_file": "reports/metrics.json",
"plots_cm": "reports/plot_confusion_matrix.png"
}
}
Or multiple targets:
>>> import json
>>> import dvc.api
>>> params = dvc.api.params_show(
... "configs/params_dev.yaml", "configs/params_prod.yaml")
>>> print(json.dumps(params, indent=4))
{
"configs/params_prod.yaml:run_mode": "prod",
"configs/params_prod.yaml:config_file": "configs/params_prod.yaml",
"configs/params_prod.yaml:data_load": {
"dataset": "large",
"sampling": {
"enable": true,
"size": 50000
}
},
"configs/params_prod.yaml:train": {
"epochs": 1000
},
"configs/params_dev.yaml:run_mode": "dev",
"configs/params_dev.yaml:config_file": "configs/params_dev.yaml",
"configs/params_dev.yaml:data_load": {
"dataset": "development",
"sampling": {
"enable": true,
"size": 1000
}
},
"configs/params_dev.yaml:train": {
"epochs": 10
}
}
---
- Git URL as `repo`.
>>> import json
>>> import dvc.api
>>> params = dvc.api.params_show(
... repo="https://github.com/iterative/demo-fashion-mnist")
{
"train": {
"batch_size": 128,
"hidden_units": 64,
"dropout": 0.4,
"num_epochs": 10,
"lr": 0.001,
"conv_activation": "relu"
}
}
.. _Git revision:
https://git-scm.com/docs/revisions
"""
if isinstance(stages, str):
stages = [stages]
def _onerror_raise(_result: Dict, exception: Exception, *args, **kwargs):
raise exception
def _postprocess(params):
processed: Dict[str, Dict] = {}
for rev, rev_data in params.items():
processed[rev] = {}
counts: typing.Counter[str] = Counter()
for file_data in rev_data["data"].values():
for k in file_data["data"]:
counts[k] += 1
for file_name, file_data in rev_data["data"].items():
to_merge = {
(k if counts[k] == 1 else f"{file_name}:{k}"): v
for k, v in file_data["data"].items()
}
processed[rev] = {**processed[rev], **to_merge}
if "workspace" in processed:
del processed["workspace"]
if not processed:
raise DvcException("No params found")
return processed[first(processed)]
with Repo.open(repo) as _repo:
params = _repo.params.show(
revs=rev if rev is None else [rev],
targets=targets,
deps=deps,
onerror=_onerror_raise,
stages=stages,
)
return _postprocess(params)
+16 -38
View File
@@ -1,23 +1,8 @@
from typing import TYPE_CHECKING
from dvc.scheme import Schemes
if TYPE_CHECKING:
from .index import ObjectDBIndexBase
from dvc.fs import GitFileSystem, Schemes
from dvc_data.hashfile.db import get_odb
def get_odb(fs, fs_path, **config):
from dvc.objects.db import ObjectDB
from .local import LocalObjectDB
if fs.scheme == Schemes.LOCAL:
return LocalObjectDB(fs, fs_path, **config)
return ObjectDB(fs, fs_path, **config)
def _get_odb(repo, settings):
def _get_odb(repo, settings, fs=None):
from dvc.fs import get_cloud_fs
if not settings:
@@ -25,24 +10,11 @@ def _get_odb(repo, settings):
cls, config, fs_path = get_cloud_fs(repo, **settings)
config["tmp_dir"] = repo.tmp_dir
return get_odb(cls(**config), fs_path, state=repo.state, **config)
fs = fs or cls(**config)
return get_odb(fs, fs_path, state=repo.state, **config)
def get_index(odb) -> "ObjectDBIndexBase":
import hashlib
from .index import ObjectDBIndex, ObjectDBIndexNoop
cls = ObjectDBIndex if odb.tmp_dir else ObjectDBIndexNoop
return cls(
odb.tmp_dir,
hashlib.sha256(
odb.fs.unstrip_protocol(odb.fs_path).encode("utf-8")
).hexdigest(),
)
class ODBManager:
class CacheManager:
CACHE_DIR = "cache"
CLOUD_SCHEMES = [
Schemes.S3,
@@ -53,7 +25,7 @@ class ODBManager:
]
def __init__(self, repo):
self.repo = repo
self._repo = repo
self.config = config = repo.config["cache"]
self._odb = {}
@@ -67,17 +39,23 @@ class ODBManager:
from dvc.config_schema import LOCAL_COMMON
settings = {"url": config["dir"]}
for opt in LOCAL_COMMON.keys():
for opt in LOCAL_COMMON:
if opt in config:
settings[str(opt)] = config.get(opt)
self._odb[Schemes.LOCAL] = _get_odb(repo, settings)
kwargs = {}
if not isinstance(repo.fs, GitFileSystem):
kwargs["fs"] = repo.fs
odb = _get_odb(repo, settings, **kwargs)
self._odb["repo"] = odb
self._odb[Schemes.LOCAL] = odb
def _init_odb(self, schemes):
for scheme in schemes:
remote = self.config.get(scheme)
settings = {"name": remote} if remote else None
self._odb[scheme] = _get_odb(self.repo, settings)
self._odb[scheme] = _get_odb(self._repo, settings)
def __getattr__(self, name):
if name not in self._odb and name in self.CLOUD_SCHEMES:
+130 -26
View File
@@ -6,6 +6,7 @@ import sys
# Workaround for CPython bug. See [1] and [2] for more info.
# [1] https://github.com/aws/aws-cli/blob/1.16.277/awscli/clidriver.py#L55
# [2] https://bugs.python.org/issue29288
from typing import Optional
"".encode("idna")
@@ -36,6 +37,110 @@ def parse_args(argv=None):
return args
def _log_unknown_exceptions() -> None:
from dvc.info import get_dvc_info
from dvc.logger import FOOTER
logger.exception("unexpected error")
if logger.isEnabledFor(logging.DEBUG):
logger.debug("Version info for developers:\n%s", get_dvc_info())
logger.info(FOOTER)
def _log_exceptions(exc: Exception) -> Optional[int]:
"""Try to log some known exceptions, that are not DVCExceptions."""
from dvc.utils import error_link, format_link
if isinstance(exc, OSError):
import errno
if exc.errno == errno.EMFILE:
logger.exception(
(
"too many open files, please visit "
"%s to see how to handle this problem"
),
error_link("many-files"),
extra={"tb_only": True},
)
else:
_log_unknown_exceptions()
return None
from dvc.fs import AuthError, ConfigError, RemoteMissingDepsError
if isinstance(exc, RemoteMissingDepsError):
from dvc.utils.pkg import PKG
proto = exc.protocol
by_pkg = {
"pip": f"pip install 'dvc[{proto}]'",
"conda": f"conda install -c conda-forge dvc-{proto}",
}
cmd = by_pkg.get(PKG)
if cmd:
link = format_link("https://dvc.org/doc/install")
hint = (
"To install dvc with those dependencies, run:\n"
"\n"
f"\t{cmd}\n"
"\n"
f"See {link} for more info."
)
else:
link = format_link("https://github.com/iterative/dvc/issues")
hint = f"\nPlease report this bug to {link}. Thank you!"
logger.exception(
"URL '%s' is supported but requires these missing dependencies: %s. %s",
exc.url,
exc.missing_deps,
hint,
extra={"tb_only": True},
)
return None
if isinstance(exc, (AuthError, ConfigError)):
link = format_link("https://man.dvc.org/remote/modify")
logger.exception("configuration error")
logger.exception(
"%s\nLearn more about configuration settings at %s.",
exc,
link,
extra={"tb_only": True},
)
return 251
from dvc_data.hashfile.cache import DiskError
if isinstance(exc, DiskError):
from dvc.utils import relpath
directory = relpath(exc.directory)
logger.exception(
(
"Could not open pickled '%s' cache.\n"
"Remove the '%s' directory and then retry this command."
"\nSee %s for more information."
),
exc.type,
directory,
error_link("pickle"),
extra={"tb_only": True},
)
return None
from dvc_data.hashfile.build import IgnoreInCollectedDirError
if isinstance(exc, IgnoreInCollectedDirError):
logger.exception("")
return None
_log_unknown_exceptions()
return None
def main(argv=None): # noqa: C901
"""Main entry point for dvc CLI.
@@ -48,7 +153,7 @@ def main(argv=None): # noqa: C901
from dvc._debug import debugtools
from dvc.config import ConfigError
from dvc.exceptions import DvcException, NotDvcRepoError
from dvc.logger import FOOTER, disable_other_loggers
from dvc.logger import set_loggers_level
# NOTE: stderr/stdout may be closed if we are running from dvc.daemon.
# On Linux we directly call cli.main after double forking and closing
@@ -61,7 +166,6 @@ def main(argv=None): # noqa: C901
logging.disable(logging.INFO)
args = None
disable_other_loggers()
outerLogLevel = logger.level
try:
@@ -73,12 +177,23 @@ def main(argv=None): # noqa: C901
elif args.verbose == 1:
level = logging.DEBUG
elif args.verbose > 1:
level = logging.TRACE
level = logging.TRACE # type: ignore[attr-defined]
if level is not None:
logger.setLevel(level)
set_loggers_level(level)
logger.trace(args)
if level and level <= logging.DEBUG:
from platform import platform, python_implementation, python_version
from dvc import __version__
from dvc.utils.pkg import PKG
pyv = " ".join([python_implementation(), python_version()])
pkg = f" ({PKG})" if PKG else ""
logger.debug("v%s%s, %s on %s", __version__, pkg, pyv, platform())
logger.debug("command: %s", " ".join(argv or sys.argv))
logger.trace(args) # type: ignore[attr-defined]
if not sys.stdout.closed and not args.quiet:
from dvc.ui import ui
@@ -94,6 +209,15 @@ def main(argv=None): # noqa: C901
except KeyboardInterrupt:
logger.exception("interrupted by the user")
ret = 252
except BrokenPipeError:
import os
# Python flushes standard streams on exit; redirect remaining output
# to devnull to avoid another BrokenPipeError at shutdown
# See: https://docs.python.org/3/library/signal.html#note-on-sigpipe
devnull = os.open(os.devnull, os.O_WRONLY)
os.dup2(devnull, sys.stdout.fileno())
ret = 141 # 128 + 13 (SIGPIPE)
except NotDvcRepoError:
logger.exception("")
ret = 253
@@ -104,27 +228,7 @@ def main(argv=None): # noqa: C901
ret = 254
except Exception as exc: # noqa, pylint: disable=broad-except
# pylint: disable=no-member
import errno
if isinstance(exc, OSError) and exc.errno == errno.EMFILE:
from dvc.utils import error_link
logger.exception(
"too many open files, please visit "
"{} to see how to handle this "
"problem".format(error_link("many-files")),
extra={"tb_only": True},
)
else:
from dvc.info import get_dvc_info
logger.exception("unexpected error")
dvc_info = get_dvc_info()
logger.debug("Version info for developers:\n%s", dvc_info)
logger.info(FOOTER)
ret = 255
ret = _log_exceptions(exc) or 255
try:
from dvc import analytics
+20
View File
@@ -0,0 +1,20 @@
from argparse import _AppendAction
class CommaSeparatedArgs(_AppendAction): # pylint: disable=protected-access
def __call__(self, parser, namespace, values, option_string=None): # noqa: ARG002
from funcy import ldistinct
items = getattr(namespace, self.dest) or []
items.extend(map(str.strip, values.split(",")))
setattr(namespace, self.dest, ldistinct(items))
class KeyValueArgs(_AppendAction):
def __call__(self, parser, namespace, values, option_string=None): # noqa: ARG002
items = getattr(namespace, self.dest) or {}
for value in filter(bool, values):
key, _, value = value.partition("=")
items[key.strip()] = value
setattr(namespace, self.dest, items)
+7 -3
View File
@@ -1,6 +1,10 @@
import logging
import os
from abc import ABC, abstractmethod
from typing import TYPE_CHECKING, Any
if TYPE_CHECKING:
from dvc.config import Config
logger = logging.getLogger(__name__)
@@ -8,13 +12,13 @@ logger = logging.getLogger(__name__)
class CmdBase(ABC):
UNINITIALIZED = False
def __init__(self, args):
def __init__(self, args: Any):
from dvc.repo import Repo
os.chdir(args.cd)
self.repo = Repo(uninitialized=self.UNINITIALIZED)
self.config = self.repo.config
self.repo: "Repo" = Repo(uninitialized=self.UNINITIALIZED)
self.config: "Config" = self.repo.config
self.args = args
def do_run(self):
+9 -16
View File
@@ -2,8 +2,8 @@
import argparse
import logging
import os
import sys
from dvc import __version__
from dvc.commands import (
add,
cache,
@@ -14,6 +14,7 @@ from dvc.commands import (
config,
daemon,
dag,
data,
data_sync,
destroy,
diff,
@@ -28,11 +29,13 @@ from dvc.commands import (
init,
install,
ls,
ls_url,
machine,
metrics,
move,
params,
plots,
queue,
remote,
remove,
repro,
@@ -50,6 +53,7 @@ logger = logging.getLogger(__name__)
COMMANDS = [
init,
queue,
get,
get_url,
destroy,
@@ -72,6 +76,7 @@ COMMANDS = [
install,
root,
ls,
ls_url,
freeze,
dag,
daemon,
@@ -86,6 +91,7 @@ COMMANDS = [
experiments,
check_ignore,
machine,
data,
]
@@ -122,17 +128,6 @@ class DvcParser(argparse.ArgumentParser):
return args
class VersionAction(argparse.Action): # pragma: no cover
# pylint: disable=too-few-public-methods
"""Shows DVC version and exits."""
def __call__(self, parser, namespace, values, option_string=None):
from dvc import __version__
print(__version__)
sys.exit(0)
def get_parent_parser():
"""Create instances of a parser containing common arguments shared among
all the commands.
@@ -180,13 +175,11 @@ def get_main_parser():
help="Show this help message and exit.",
)
# NOTE: On some python versions action='version' prints to stderr
# instead of stdout https://bugs.python.org/issue18920
parser.add_argument(
"-V",
"--version",
action=VersionAction,
nargs=0,
action="version",
version=__version__,
help="Show program's version.",
)
+6 -5
View File
@@ -21,11 +21,12 @@ def append_doc_link(help_message, path):
)
def fix_plumbing_subparsers(subparsers):
# metavar needs to be explicitly set in order to hide plumbing subcommands
def hide_subparsers_from_help(subparsers):
# metavar needs to be explicitly set in order to hide subcommands
# from the 'positional arguments' choices list
# see: https://bugs.python.org/issue22848
cmds = [
cmd for cmd, parser in subparsers.choices.items() if parser.add_help
]
# Need to set `add_help=False`, but avoid setting `help`
# (not even to `argparse.SUPPPRESS`).
# NOTE: The argument is the parent subparser, not the subcommand parser.
cmds = [cmd for cmd, parser in subparsers.choices.items() if parser.add_help]
subparsers.metavar = "{{{}}}".format(",".join(cmds))
+37 -13
View File
@@ -2,18 +2,46 @@ import argparse
import logging
from dvc.cli import completion
from dvc.cli.actions import KeyValueArgs
from dvc.cli.command import CmdBase
from dvc.cli.utils import append_doc_link
logger = logging.getLogger(__name__)
def _add_annotating_args(parser: argparse.ArgumentParser) -> None:
parser.add_argument(
"--desc",
type=str,
metavar="<text>",
help="User description of the data.",
)
parser.add_argument(
"--meta",
metavar="key=value",
nargs=1,
action=KeyValueArgs,
help="Custom metadata to add to the data.",
)
parser.add_argument(
"--label",
dest="labels",
type=str,
action="append",
metavar="<str>",
help="Label for the data.",
)
parser.add_argument(
"--type",
type=str,
metavar="<str>",
help="Type of the data.",
)
class CmdAdd(CmdBase):
def run(self):
from dvc.exceptions import (
DvcException,
RecursiveAddingWhileUsingFilename,
)
from dvc.exceptions import DvcException, RecursiveAddingWhileUsingFilename
try:
if len(self.args.targets) > 1 and self.args.file:
@@ -28,6 +56,9 @@ class CmdAdd(CmdBase):
glob=self.args.glob,
desc=self.args.desc,
out=self.args.out,
type=self.args.type,
labels=self.args.labels,
meta=self.args.meta,
remote=self.args.remote,
to_remote=self.args.to_remote,
jobs=self.args.jobs,
@@ -109,15 +140,8 @@ def add_parser(subparsers, parent_parser):
),
metavar="<number>",
)
parser.add_argument(
"--desc",
type=str,
metavar="<text>",
help=(
"User description of the data (optional). "
"This doesn't affect any DVC operations."
),
)
_add_annotating_args(parser)
parser.add_argument(
"targets", nargs="+", help="Input files/directories to add."
).complete = completion.FILE
+7 -5
View File
@@ -42,7 +42,7 @@ def add_parser(subparsers, parent_parser):
cache_subparsers = cache_parser.add_subparsers(
dest="cmd",
help="Use `dvc cache CMD --help` for command-specific " "help.",
help="Use `dvc cache CMD --help` for command-specific help.",
)
fix_subparsers(cache_subparsers)
@@ -68,10 +68,12 @@ def add_parser(subparsers, parent_parser):
)
cache_dir_parser.add_argument(
"value",
help="Path to cache directory. Relative paths are resolved relative "
"to the current directory and saved to config relative to the "
"config file location. If no path is provided, it returns the "
"current cache directory.",
help=(
"Path to cache directory. Relative paths are resolved relative "
"to the current directory and saved to config relative to the "
"config file location. If no path is provided, it returns the "
"current cache directory."
),
nargs="?",
).complete = completion.DIR
cache_dir_parser.set_defaults(func=CmdCacheDir)
+10 -10
View File
@@ -62,9 +62,7 @@ class CmdCheckIgnore(CmdBase):
raise DvcException("cannot have both `targets` and `--stdin`")
if self.args.non_matching and not self.args.details:
raise DvcException(
"`--non-matching` is only valid with `--details`"
)
raise DvcException("`--non-matching` is only valid with `--details`")
if self.args.all and not self.args.details:
raise DvcException("`--all` is only valid with `--details`")
@@ -80,9 +78,7 @@ class CmdCheckIgnore(CmdBase):
def add_parser(subparsers, parent_parser):
ADD_HELP = (
"Check whether files or directories are excluded due to `.dvcignore`."
)
ADD_HELP = "Check whether files or directories are excluded due to `.dvcignore`."
parser = subparsers.add_parser(
"check-ignore",
@@ -103,16 +99,20 @@ def add_parser(subparsers, parent_parser):
"--all",
action="store_true",
default=False,
help="Include the target paths which don’t match any pattern "
"in the `--details` list.",
help=(
"Include the target paths which don't match any pattern "
"in the `--details` list."
),
)
parser.add_argument(
"-n",
"--non-matching",
action="store_true",
default=False,
help="Include the target paths which don’t match any pattern "
"in the `--details` list.",
help=(
"Include the target paths which don't match any pattern "
"in the `--details` list."
),
)
parser.add_argument(
"--stdin",
+7 -7
View File
@@ -22,9 +22,7 @@ def log_changes(stats):
continue
for entry in entries:
ui.write(
f"[{color}]{state[0].upper()}", entry, styled=True, sep="\t"
)
ui.write(f"[{color}]{state[0].upper()}", entry, styled=True, sep="\t")
class CmdCheckout(CmdBase):
@@ -46,15 +44,17 @@ class CmdCheckout(CmdBase):
if self.args.summary:
default_message = "No changes."
msg = get_summary(
sorted(stats.items(), key=operator.itemgetter(0))
)
msg = get_summary(sorted(stats.items(), key=operator.itemgetter(0)))
ui.write(msg or default_message)
else:
log_changes(stats)
if exc:
raise exc
if self.args.relink:
msg = "Relinked successfully"
ui.write(msg)
return 0
@@ -106,7 +106,7 @@ def add_parser(subparsers, parent_parser):
nargs="*",
help=(
"Limit command scope to these tracked files/directories, "
".dvc files, or stage names."
".dvc files and stage names."
),
).complete = completion.DVC_FILE
checkout_parser.set_defaults(func=CmdCheckout)
+5 -7
View File
@@ -24,11 +24,7 @@ class CmdCommit(CmdBase):
force=self.args.force,
)
except DvcException:
logger.exception(
"failed to commit{}".format(
(" " + target) if target else ""
)
)
logger.exception("failed to commit%s", (" " + target) if target else "")
return 1
return 0
@@ -70,7 +66,9 @@ def add_parser(subparsers, parent_parser):
commit_parser.add_argument(
"targets",
nargs="*",
help="stages or .dvc files to commit. Optional. "
"(Finds all DVC files in the workspace by default.)",
help=(
"Limit command scope to these tracked files/directories, "
".dvc files and stage names."
),
).complete = completion.DVCFILES_AND_STAGE
commit_parser.set_defaults(func=CmdCommit)
+9 -16
View File
@@ -17,9 +17,7 @@ def _name_type(value):
match = re.match(NAME_REGEX, value)
if not match:
raise argparse.ArgumentTypeError(
"name argument should look like "
"remote.name.option or "
"section.option"
"name argument should look like remote.name.option or section.option"
)
return (
bool(match.group("remote")),
@@ -37,13 +35,12 @@ class CmdConfig(CmdBaseNoRepo):
self.config = Config(validate=False)
def run(self):
if self.args.show_origin:
if any((self.args.value, self.args.unset)):
logger.error(
"--show-origin can't be used together with any of these "
"options: -u/--unset, value"
)
return 1
if self.args.show_origin and (self.args.value or self.args.unset):
logger.error(
"--show-origin can't be used together with any of these "
"options: -u/--unset, value"
)
return 1
if self.args.list:
return self._list()
@@ -71,9 +68,7 @@ class CmdConfig(CmdBaseNoRepo):
for level in levels:
conf = self.config.read(level)
prefix = self._config_file_prefix(
self.args.show_origin, self.config, level
)
prefix = self._config_file_prefix(self.args.show_origin, self.config, level)
configs = list(self._format_config(conf, prefix))
if configs:
ui.write("\n".join(configs))
@@ -132,9 +127,7 @@ class CmdConfig(CmdBaseNoRepo):
raise ConfigError(f"{name} '{section}' doesn't exist")
if opt and opt not in conf[section]:
raise ConfigError(
f"option '{opt}' doesn't exist in {name} '{section}'"
)
raise ConfigError(f"option '{opt}' doesn't exist in {name} '{section}'")
def _get_appropriate_levels(self, levels):
if levels:
+1 -1
View File
@@ -46,7 +46,7 @@ def add_parser(subparsers, parent_parser):
daemon_subparsers = daemon_parser.add_subparsers(
dest="cmd",
help="Use `dvc daemon CMD --help` for command-specific " "help.",
help="Use `dvc daemon CMD --help` for command-specific help.",
)
fix_subparsers(daemon_subparsers)
+25 -9
View File
@@ -1,11 +1,15 @@
import argparse
from typing import TYPE_CHECKING
from dvc.cli.command import CmdBase
from dvc.cli.utils import append_doc_link
from dvc.ui import ui
if TYPE_CHECKING:
from networkx import DiGraph
def _show_ascii(G):
def _show_ascii(G: "DiGraph"):
from dvc.dagascii import draw
from dvc.repo.graph import get_pipelines
@@ -18,13 +22,25 @@ def _show_ascii(G):
return "\n".join(ret)
def _show_dot(G):
def _quote_label(node):
label = str(node)
# Node names should not contain ":" unless they are quoted with "".
# See: https://github.com/pydot/pydot/issues/258.
if label[0] != '"' and label[-1] != '"':
return f'"{label}"'
return label
def _show_dot(G: "DiGraph"):
import io
import networkx as nx
from networkx.drawing.nx_pydot import write_dot
dot_file = io.StringIO()
write_dot(G, dot_file)
nx.relabel_nodes(G, _quote_label, copy=False)
write_dot(G.reverse(), dot_file)
return dot_file.getvalue()
@@ -42,7 +58,7 @@ def _show_mermaid(G, markdown: bool = False):
for node in nodes:
total_nodes += 1
node_id = f"node{total_nodes}"
graph += f"\n\t{node_id}[{node}]"
graph += f'\n\t{node_id}["{node}"]'
node_ids[node] = node_id
edges = sorted((str(a), str(b)) for b, a in pipeline.edges)
for a, b in edges:
@@ -70,9 +86,7 @@ def _collect_targets(repo, target, outs):
targets.extend([str(out) for out in stage.outs])
continue
for out in outs_trie.itervalues(
prefix=repo.fs.path.parts(path)
): # noqa: B301
for out in outs_trie.itervalues(prefix=repo.fs.path.parts(path)): # noqa: B301
targets.extend(str(out))
return targets
@@ -188,7 +202,9 @@ def add_parser(subparsers, parent_parser):
dag_parser.add_argument(
"target",
nargs="?",
help="Stage or output to show pipeline for (optional). "
"Finds all stages in the workspace by default.",
help=(
"Stage name or output to show pipeline for. "
"Finds all stages in the workspace by default."
),
)
dag_parser.set_defaults(func=CmdDAG)
+290
View File
@@ -0,0 +1,290 @@
import argparse
import logging
from operator import itemgetter
from typing import TYPE_CHECKING, Any, Dict, Iterable, Set
from funcy import chunks, compact, log_durations
from dvc.cli import completion
from dvc.cli.actions import CommaSeparatedArgs
from dvc.cli.command import CmdBase
from dvc.cli.utils import append_doc_link, fix_subparsers, hide_subparsers_from_help
from dvc.ui import ui
from dvc.utils import colorize
if TYPE_CHECKING:
from dvc.repo.data import Status as DataStatus
logger = logging.getLogger(__name__)
class CmdDataStatus(CmdBase):
COLORS = {
"not_in_cache": "red",
"committed": "green",
"uncommitted": "yellow",
"untracked": "cyan",
}
LABELS = {
"not_in_cache": "Not in cache",
"committed": "DVC committed changes",
"uncommitted": "DVC uncommitted changes",
"untracked": "Untracked files",
"unchanged": "DVC unchanged files",
}
HINTS = {
"not_in_cache": ('use "dvc fetch <file>..." to download files',),
"committed": ("git commit the corresponding dvc files to update the repo",),
"uncommitted": (
'use "dvc commit <file>..." to track changes',
'use "dvc checkout <file>..." to discard changes',
),
"untracked": (
(
'use "git add <file> ..." or '
'"dvc add <file>..." to commit to git or to dvc'
),
),
"git_dirty": (
'there are {}changes not tracked by dvc, use "git status" to see',
),
}
@staticmethod
def _process_status(status: "DataStatus"):
"""Flatten stage status, and filter empty stage status contents."""
for stage, stage_status in status.items():
items = stage_status
if isinstance(stage_status, dict):
items = {
file: state
for state, files in stage_status.items()
for file in files
}
if not items:
continue
yield stage, items
@classmethod
def _show_status(cls, status: "DataStatus") -> int: # noqa: C901
git_info = status.pop("git") # type: ignore[misc]
result = dict(cls._process_status(status))
if not result:
no_changes = "No changes"
if git_info.get("is_empty", False):
no_changes += " in an empty git repo"
ui.write(f"{no_changes}.")
for idx, (stage, stage_status) in enumerate(result.items()):
if idx:
ui.write()
label = cls.LABELS.get(stage, stage.capitalize() + " files")
header = f"{label}:"
color = cls.COLORS.get(stage, None)
ui.write(header)
if hints := cls.HINTS.get(stage):
for hint in hints:
ui.write(f" ({hint})")
if isinstance(stage_status, dict):
items = [
": ".join([state, file]) for file, state in stage_status.items()
]
else:
items = stage_status
tabs = "\t".expandtabs(8)
for chunk in chunks(1000, items):
out = "\n".join(tabs + item for item in chunk)
ui.write(colorize(out, color))
if (hints := cls.HINTS.get("git_dirty")) and git_info.get("is_dirty"):
for hint in hints:
message = hint.format("other " if result else "")
ui.write(f"[blue]({message})[/]", styled=True)
return 0
def run(self) -> int:
with log_durations(
logger.trace, "in data_status" # type: ignore[attr-defined]
):
status = self.repo.data_status(
granular=self.args.granular,
untracked_files=self.args.untracked_files,
)
if not self.args.unchanged:
status.pop("unchanged") # type: ignore[misc]
if self.args.untracked_files == "no":
status.pop("untracked")
if self.args.json:
status.pop("git") # type: ignore[misc]
ui.write_json(compact(status))
return 0
return self._show_status(status)
class CmdDataLs(CmdBase):
@staticmethod
def _show_table(
d: Iterable[Dict[str, Any]],
filter_types: Set[str],
filter_labels: Set[str],
markdown: bool = False,
) -> None:
from rich.style import Style
from dvc.compare import TabularData
td = TabularData(
columns=["Path", "Type", "Labels", "Description"], fill_value="-"
)
for entry in sorted(d, key=itemgetter("path")):
typ = entry.get("type", "")
desc = entry.get("desc", "-")
labels = entry.get("labels", [])
if filter_types and typ not in filter_types:
continue
if filter_labels and filter_labels.isdisjoint(labels):
continue
rich_label = ui.rich_text()
for index, label in enumerate(labels):
if index:
rich_label.append(",")
style = Style(bold=label in filter_labels, color="green")
rich_label.append(label, style=style)
if markdown and desc:
desc = desc.partition("\n")[0]
path = ui.rich_text(entry["path"], style="cyan")
type_style = Style(bold=typ in filter_types, color="yellow")
typ = ui.rich_text(entry.get("type", ""), style=type_style)
td.append([path, typ or "-", rich_label or "-", desc])
td.render(markdown=markdown, rich_table=True)
def run(self):
from dvc.repo.data import ls
filter_labels = set(self.args.labels)
filter_types = set(self.args.type)
d = ls(self.repo, targets=self.args.targets, recursive=self.args.recursive)
self._show_table(
d,
filter_labels=filter_labels,
filter_types=filter_types,
markdown=self.args.markdown,
)
return 0
def add_parser(subparsers, parent_parser):
data_parser = subparsers.add_parser(
"data",
parents=[parent_parser],
formatter_class=argparse.RawDescriptionHelpFormatter,
)
data_subparsers = data_parser.add_subparsers(
dest="cmd",
help="Use `dvc data CMD --help` to display command-specific help.",
)
fix_subparsers(data_subparsers)
DATA_STATUS_HELP = (
"Show changes between the last git commit, the dvcfiles and the workspace."
)
data_status_parser = data_subparsers.add_parser(
"status",
parents=[parent_parser],
description=append_doc_link(DATA_STATUS_HELP, "data/status"),
formatter_class=argparse.RawDescriptionHelpFormatter,
help=DATA_STATUS_HELP,
)
data_status_parser.add_argument(
"--json",
action="store_true",
default=False,
help="Show output in JSON format.",
)
data_status_parser.add_argument(
"--show-json",
action="store_true",
default=False,
dest="json",
help=argparse.SUPPRESS,
)
data_status_parser.add_argument(
"--granular",
action="store_true",
default=False,
help="Show granular file-level info for DVC-tracked directories.",
)
data_status_parser.add_argument(
"--unchanged",
action="store_true",
default=False,
help="Show unmodified DVC-tracked files.",
)
data_status_parser.add_argument(
"--untracked-files",
choices=["no", "all"],
default="no",
const="all",
nargs="?",
help="Show untracked files.",
)
data_status_parser.set_defaults(func=CmdDataStatus)
DATA_LS_HELP = "List data tracked by DVC with its metadata."
data_ls_parser = data_subparsers.add_parser(
"ls",
aliases=["list"],
parents=[parent_parser],
description=append_doc_link(DATA_LS_HELP, "data/ls"),
formatter_class=argparse.RawDescriptionHelpFormatter,
add_help=False,
)
data_ls_parser.add_argument(
"--md",
"--show-md",
dest="markdown",
action="store_true",
default=False,
help="Show tabulated output in the Markdown format (GFM).",
)
data_ls_parser.add_argument(
"--type",
action=CommaSeparatedArgs,
default=[],
help="Comma-separated list of type to filter.",
)
data_ls_parser.add_argument(
"--labels",
action=CommaSeparatedArgs,
default=[],
help="Comma-separated list of labels to filter.",
)
data_ls_parser.add_argument(
"-R",
"--recursive",
action="store_true",
default=False,
help="Recursively list from the specified directories.",
)
data_ls_parser.add_argument(
"targets",
default=None,
nargs="*",
help=(
"Limit command scope to these tracked files/directories, "
".dvc files, or stage names."
),
).complete = completion.DVCFILES_AND_STAGE
data_ls_parser.set_defaults(func=CmdDataLs)
hide_subparsers_from_help(data_subparsers)
+19 -17
View File
@@ -43,7 +43,8 @@ class CmdDataPull(CmdDataBase):
)
self.log_summary(stats)
except (CheckoutError, DvcException) as exc:
self.log_summary(getattr(exc, "stats", {}))
if stats := getattr(exc, "stats", {}):
self.log_summary(stats)
logger.exception("failed to pull data from the cloud")
return 1
@@ -119,9 +120,9 @@ def shared_parent_parser():
nargs="*",
help=(
"Limit command scope to these tracked files/directories, "
".dvc files, or stage names."
".dvc files and stage names."
),
).complete = completion.DVC_FILE
).complete = completion.DVC_FILE # type: ignore[attr-defined]
return parent_parser
@@ -194,7 +195,7 @@ def add_parser(subparsers, _parent_parser):
"--glob",
action="store_true",
default=False,
help="Pull cache for targets matching shell-style wildcards.",
help=argparse.SUPPRESS,
)
pull_parser.set_defaults(func=CmdDataPull)
@@ -261,9 +262,7 @@ def add_parser(subparsers, _parent_parser):
push_parser.set_defaults(func=CmdDataPush)
# Fetch
FETCH_HELP = (
"Download files or directories from remote storage to the cache."
)
FETCH_HELP = "Download files or directories from remote storage to the cache."
fetch_parser = subparsers.add_parser(
"fetch",
@@ -301,7 +300,7 @@ def add_parser(subparsers, _parent_parser):
"--with-deps",
action="store_true",
default=False,
help="Fetch cache for all dependencies of the " "specified target.",
help="Fetch cache for all dependencies of the specified target.",
)
fetch_parser.add_argument(
"-R",
@@ -319,9 +318,7 @@ def add_parser(subparsers, _parent_parser):
fetch_parser.set_defaults(func=CmdDataFetch)
# Status
STATUS_HELP = (
"Show changed stages, compare local cache and a remote storage."
)
STATUS_HELP = "Show changed stages, compare local cache and a remote storage."
status_parser = subparsers.add_parser(
"status",
@@ -359,24 +356,29 @@ def add_parser(subparsers, _parent_parser):
"--all-branches",
action="store_true",
default=False,
help="Show status of a local cache compared to a remote repository "
"for all branches.",
help=(
"Show status of a local cache compared to a remote repository "
"for all branches."
),
)
status_parser.add_argument(
"-T",
"--all-tags",
action="store_true",
default=False,
help="Show status of a local cache compared to a remote repository "
"for all tags.",
help=(
"Show status of a local cache compared to a remote repository for all tags."
),
)
status_parser.add_argument(
"-A",
"--all-commits",
action="store_true",
default=False,
help="Show status of a local cache compared to a remote repository "
"for all commits.",
help=(
"Show status of a local cache compared to a remote repository "
"for all commits."
),
)
status_parser.add_argument(
"-d",
+10 -15
View File
@@ -109,12 +109,10 @@ class CmdDiff(CmdBase):
ui.write()
if not sum(summary.values()):
return None
return
states_summary = ", ".join(
f"{summary[state]} {state}"
for state in states
if summary[state] > 0
f"{summary[state]} {state}" for state in states if summary[state] > 0
)
ui.write("files summary:", states_summary)
@@ -122,9 +120,7 @@ class CmdDiff(CmdBase):
from dvc.exceptions import DvcException
try:
diff = self.repo.diff(
self.args.a_rev, self.args.b_rev, self.args.targets
)
diff = self.repo.diff(self.args.a_rev, self.args.b_rev, self.args.targets)
show_hash = self.args.show_hash
hide_missing = self.args.b_rev or self.args.hide_missing
if hide_missing:
@@ -133,9 +129,11 @@ class CmdDiff(CmdBase):
for key, entries in diff.items():
entries = sorted(
entries,
key=lambda entry: entry["path"]["old"]
if isinstance(entry["path"], dict)
else entry["path"],
key=lambda entry: (
entry["path"]["old"]
if isinstance(entry["path"], dict)
else entry["path"]
),
)
if not show_hash:
for entry in entries:
@@ -170,10 +168,7 @@ def add_parser(subparsers, parent_parser):
diff_parser.add_argument(
"--targets",
nargs="*",
help=(
"Specific DVC-tracked files to compare. "
"Accepts one or more file paths."
),
help="Specific DVC-tracked files to compare. Accepts one or more file paths.",
metavar="<paths>",
).complete = completion.FILE
diff_parser.add_argument(
@@ -184,7 +179,7 @@ def add_parser(subparsers, parent_parser):
)
diff_parser.add_argument(
"b_rev",
help=("New Git commit to compare (defaults to the current workspace)"),
help="New Git commit to compare (defaults to the current workspace)",
nargs="?",
)
diff_parser.add_argument(
+7 -8
View File
@@ -1,10 +1,6 @@
import argparse
from dvc.cli.utils import (
append_doc_link,
fix_plumbing_subparsers,
fix_subparsers,
)
from dvc.cli.utils import append_doc_link, fix_subparsers, hide_subparsers_from_help
from dvc.commands.experiments import (
apply,
branch,
@@ -15,8 +11,10 @@ from dvc.commands.experiments import (
ls,
pull,
push,
queue_worker,
remove,
run,
save,
show,
)
@@ -30,8 +28,10 @@ SUB_COMMANDS = [
ls,
pull,
push,
queue_worker,
remove,
run,
save,
show,
]
@@ -50,14 +50,13 @@ def add_parser(subparsers, parent_parser):
experiments_subparsers = experiments_parser.add_subparsers(
dest="cmd",
help="Use `dvc experiments CMD --help` to display "
"command-specific help.",
help="Use `dvc experiments CMD --help` to display command-specific help.",
)
fix_subparsers(experiments_subparsers)
for cmd in SUB_COMMANDS:
cmd.add_parser(experiments_subparsers, parent_parser)
fix_plumbing_subparsers(experiments_subparsers)
hide_subparsers_from_help(experiments_subparsers)
def add_rev_selection_flags(
+2 -8
View File
@@ -10,19 +10,13 @@ logger = logging.getLogger(__name__)
class CmdExperimentsApply(CmdBase):
def run(self):
self.repo.experiments.apply(
self.args.experiment, force=self.args.force
)
self.repo.experiments.apply(self.args.experiment, force=self.args.force)
return 0
def add_parser(experiments_subparsers, parent_parser):
EXPERIMENTS_APPLY_HELP = (
"Apply the changes from an experiment to your workspace."
)
EXPERIMENTS_APPLY_HELP = "Apply the changes from an experiment to your workspace."
experiments_apply_parser = experiments_subparsers.add_parser(
"apply",
parents=[parent_parser],
+1 -5
View File
@@ -9,14 +9,12 @@ logger = logging.getLogger(__name__)
class CmdExperimentsBranch(CmdBase):
def run(self):
self.repo.experiments.branch(self.args.experiment, self.args.branch)
return 0
def add_parser(experiments_subparsers, parent_parser):
EXPERIMENTS_BRANCH_HELP = "Promote an experiment to a Git branch."
experiments_branch_parser = experiments_subparsers.add_parser(
"branch",
@@ -28,7 +26,5 @@ def add_parser(experiments_subparsers, parent_parser):
experiments_branch_parser.add_argument(
"experiment", help="Experiment to be promoted."
)
experiments_branch_parser.add_argument(
"branch", help="Git branch name to use."
)
experiments_branch_parser.add_argument("branch", help="Name for the new Git branch")
experiments_branch_parser.set_defaults(func=CmdExperimentsBranch)
+2 -6
View File
@@ -13,7 +13,6 @@ logger = logging.getLogger(__name__)
class CmdExperimentsDiff(CmdBase):
def run(self):
try:
diff = self.repo.experiments.diff(
a_rev=self.args.a_rev,
@@ -27,7 +26,7 @@ class CmdExperimentsDiff(CmdBase):
if self.args.json:
ui.write_json(diff)
else:
elif diff:
from dvc.compare import show_diff
precision = self.args.precision or DEFAULT_PRECISION
@@ -53,10 +52,7 @@ class CmdExperimentsDiff(CmdBase):
def add_parser(experiments_subparsers, parent_parser):
EXPERIMENTS_DIFF_HELP = (
"Show changes between experiments in the DVC repository."
)
EXPERIMENTS_DIFF_HELP = "Show changes between experiments in the DVC repository."
experiments_diff_parser = experiments_subparsers.add_parser(
"diff",
+1 -4
View File
@@ -9,10 +9,7 @@ class CmdExecutorRun(CmdBaseNoRepo):
"""Run an experiment executor."""
def run(self):
from dvc.repo.experiments.executor.base import (
BaseExecutor,
ExecutorInfo,
)
from dvc.repo.experiments.executor.base import BaseExecutor, ExecutorInfo
from dvc.utils.serialize import load_json
info = ExecutorInfo.from_dict(load_json(self.args.infofile))
+27 -11
View File
@@ -12,8 +12,8 @@ logger = logging.getLogger(__name__)
def _raise_error_if_all_disabled(**kwargs):
if not any(kwargs.values()):
raise InvalidArgumentError(
"Either of `-w|--workspace`, `-a|--all-branches`, `-T|--all-tags` "
"or `--all-commits` needs to be set."
"Either of `-w|--workspace`, `-a|--all-branches`, `-T|--all-tags`,"
" `--all-commits` or `--date` needs to be set."
)
@@ -23,6 +23,7 @@ class CmdExperimentsGC(CmdBase):
all_branches=self.args.all_branches,
all_tags=self.args.all_tags,
all_commits=self.args.all_commits,
commit_date=self.args.commit_date,
workspace=self.args.workspace,
)
@@ -31,13 +32,18 @@ class CmdExperimentsGC(CmdBase):
msg += "the workspace"
if self.args.all_commits:
msg += " and all git commits"
elif self.args.all_branches and self.args.all_tags:
msg += " and all git branches and tags"
elif self.args.all_branches:
msg += " and all git branches"
elif self.args.all_tags:
msg += " and all git tags"
else:
if self.args.all_branches and self.args.all_tags:
msg += " and all git branches and tags"
elif self.args.all_branches:
msg += " and all git branches"
elif self.args.all_tags:
msg += " and all git tags"
if self.args.commit_date:
msg += f" and all git commits before date {self.args.commit_date}"
msg += " of the current repo."
if self.args.queued:
msg += " Run queued experiments will be preserved."
else:
@@ -54,6 +60,7 @@ class CmdExperimentsGC(CmdBase):
all_tags=self.args.all_tags,
all_commits=self.args.all_commits,
workspace=self.args.workspace,
commit_date=self.args.commit_date,
queued=self.args.queued,
)
@@ -69,11 +76,9 @@ class CmdExperimentsGC(CmdBase):
def add_parser(experiments_subparsers, parent_parser):
EXPERIMENTS_GC_HELP = "Garbage collect unneeded experiments."
EXPERIMENTS_GC_DESCRIPTION = (
"Removes all experiments which are not derived from the specified"
"Git revisions."
"Removes all experiments which are not derived from the specifiedGit revisions."
)
experiments_gc_parser = experiments_subparsers.add_parser(
"gc",
@@ -110,6 +115,17 @@ def add_parser(experiments_subparsers, parent_parser):
default=False,
help="Keep experiments derived from all Git commits.",
)
experiments_gc_parser.add_argument(
"--date",
type=str,
dest="commit_date",
metavar="<YYYY-MM-DD>",
default=None,
help=(
"Keep experiments from the commits after (inclusive) a certain "
"date. Date must match the extended ISO 8601 format (YYYY-MM-DD)."
),
)
experiments_gc_parser.add_argument(
"--queued",
action="store_true",
+41 -24
View File
@@ -25,7 +25,6 @@ class CmdExperimentsInit(CmdBase):
DEFAULT_METRICS = "metrics.json"
DEFAULT_PARAMS = "params.yaml"
PLOTS = "plots"
DVCLIVE = "dvclive"
DEFAULTS = {
"code": CODE,
"data": DATA,
@@ -33,7 +32,6 @@ class CmdExperimentsInit(CmdBase):
"metrics": DEFAULT_METRICS,
"params": DEFAULT_PARAMS,
"plots": PLOTS,
"live": DVCLIVE,
}
def run(self):
@@ -63,7 +61,7 @@ class CmdExperimentsInit(CmdBase):
}
)
initialized_stage, initialized_deps = init(
initialized_stage, initialized_deps, initialized_out_dirs = init(
self.repo,
name=self.args.name,
type=self.args.type,
@@ -72,21 +70,30 @@ class CmdExperimentsInit(CmdBase):
interactive=self.args.interactive,
force=self.args.force,
)
self._post_init_display(initialized_stage, initialized_deps)
self._post_init_display(
initialized_stage, initialized_deps, initialized_out_dirs
)
if self.args.run:
self.repo.experiments.run(targets=[initialized_stage.addressing])
return 0
def _post_init_display(
self, stage: "PipelineStage", new_deps: List["Dependency"]
self,
stage: "PipelineStage",
new_deps: List["Dependency"],
new_out_dirs: List[str],
) -> None:
from dvc.utils import humanize
path_fmt = "[green]{0}[/green]".format
path_fmt = "[green]{}[/green]".format
if new_deps:
deps_paths = humanize.join(map(path_fmt, new_deps))
ui.write(f"Creating dependencies: {deps_paths}", styled=True)
if new_out_dirs:
out_dirs_paths = humanize.join(map(path_fmt, new_out_dirs))
ui.write(f"Creating output directories: {out_dirs_paths}", styled=True)
ui.write(
f"Creating [b]{self.args.name}[/b] stage in [green]dvc.yaml[/]",
styled=True,
@@ -111,7 +118,6 @@ class CmdExperimentsInit(CmdBase):
def add_parser(experiments_subparsers, parent_parser):
EXPERIMENTS_INIT_HELP = "Quickly setup any project to use experiments."
experiments_init_parser = experiments_subparsers.add_parser(
"init",
@@ -158,44 +164,55 @@ def add_parser(experiments_subparsers, parent_parser):
)
experiments_init_parser.add_argument(
"--code",
help="Path to the source file or directory "
"which your experiments depend"
f" (default: {CmdExperimentsInit.CODE})",
help=(
"Path to the source file or directory "
"which your experiments depend"
f" (default: {CmdExperimentsInit.CODE})"
),
)
experiments_init_parser.add_argument(
"--data",
help="Path to the data file or directory "
"which your experiments depend"
f" (default: {CmdExperimentsInit.DATA})",
help=(
"Path to the data file or directory "
"which your experiments depend"
f" (default: {CmdExperimentsInit.DATA})"
),
)
experiments_init_parser.add_argument(
"--models",
help="Path to the model file or directory for your experiments"
f" (default: {CmdExperimentsInit.MODELS})",
help=(
"Path to the model file or directory for your experiments"
f" (default: {CmdExperimentsInit.MODELS})"
),
)
experiments_init_parser.add_argument(
"--params",
help="Path to the parameters file for your experiments"
f" (default: {CmdExperimentsInit.DEFAULT_PARAMS})",
help=(
"Path to the parameters file for your experiments"
f" (default: {CmdExperimentsInit.DEFAULT_PARAMS})"
),
)
experiments_init_parser.add_argument(
"--metrics",
help="Path to the metrics file for your experiments"
f" (default: {CmdExperimentsInit.DEFAULT_METRICS})",
help=(
"Path to the metrics file for your experiments"
f" (default: {CmdExperimentsInit.DEFAULT_METRICS})"
),
)
experiments_init_parser.add_argument(
"--plots",
help="Path to the plots file or directory for your experiments"
f" (default: {CmdExperimentsInit.PLOTS})",
help=(
"Path to the plots file or directory for your experiments"
f" (default: {CmdExperimentsInit.PLOTS})"
),
)
experiments_init_parser.add_argument(
"--live",
help="Path to log dvclive outputs for your experiments"
f" (default: {CmdExperimentsInit.DVCLIVE})",
help="Path to log dvclive outputs for your experiments",
)
experiments_init_parser.add_argument(
"--type",
choices=["default", "dl"],
choices=["default", "checkpoint"],
default="default",
help="Select type of stage to create (default: %(default)s)",
)
+5 -9
View File
@@ -3,6 +3,7 @@ import logging
from dvc.cli.command import CmdBase
from dvc.cli.utils import append_doc_link
from dvc.ui import ui
logger = logging.getLogger(__name__)
@@ -16,18 +17,13 @@ class CmdExperimentsList(CmdBase):
num=self.args.num,
git_remote=self.args.git_remote,
)
for baseline in exps:
tag = self.repo.scm.describe(baseline)
if not tag:
branch = self.repo.scm.describe(baseline, base="refs/heads")
if branch:
tag = branch.split("/")[-1]
name = tag if tag else baseline[:7]
if not name_only:
print(f"{name}:")
ui.write(f"{baseline}:")
for exp_name in exps[baseline]:
indent = "" if name_only else "\t"
print(f"{indent}{exp_name}")
ui.write(f"{indent}{exp_name}")
return 0
@@ -59,6 +55,6 @@ def add_parser(experiments_subparsers, parent_parser):
"If provided, experiments from the specified Git repository "
" will be listed instead of local ones."
),
metavar="[<git_remote>]",
metavar="<git_remote>",
)
experiments_list_parser.set_defaults(func=CmdExperimentsList)
+4 -10
View File
@@ -11,9 +11,7 @@ logger = logging.getLogger(__name__)
class CmdExperimentsPull(CmdBase):
def raise_error_if_all_disabled(self):
if not any(
[self.args.experiment, self.args.all_commits, self.args.rev]
):
if not any([self.args.experiment, self.args.all_commits, self.args.rev]):
raise InvalidArgumentError(
"Either provide an `experiment` argument, or use the "
"`--rev` or `--all-commits` flag."
@@ -68,16 +66,13 @@ def add_parser(experiments_subparsers, parent_parser):
"-f",
"--force",
action="store_true",
help="Replace local experiment already exists.",
help="Replace local experiment if it already exists.",
)
experiments_pull_parser.add_argument(
"--no-cache",
action="store_false",
dest="pull_cache",
help=(
"Do not pull cached outputs for this experiment from DVC remote "
"storage."
),
help="Do not pull cached outputs for this experiment from DVC remote storage.",
)
experiments_pull_parser.add_argument(
"-r",
@@ -92,8 +87,7 @@ def add_parser(experiments_subparsers, parent_parser):
type=int,
metavar="<number>",
help=(
"Number of jobs to run simultaneously when pulling from DVC "
"remote storage."
"Number of jobs to run simultaneously when pulling from DVC remote storage."
),
)
experiments_pull_parser.add_argument(
+7 -14
View File
@@ -12,16 +12,13 @@ logger = logging.getLogger(__name__)
class CmdExperimentsPush(CmdBase):
def raise_error_if_all_disabled(self):
if not any(
[self.args.experiment, self.args.all_commits, self.args.rev]
):
if not any([self.args.experiment, self.args.all_commits, self.args.rev]):
raise InvalidArgumentError(
"Either provide an `experiment` argument, or use the "
"`--rev` or `--all-commits` flag."
)
def run(self):
self.raise_error_if_all_disabled()
pushed_exps = self.repo.experiments.push(
@@ -47,8 +44,10 @@ class CmdExperimentsPush(CmdBase):
if not self.args.push_cache:
ui.write(
"To push cached outputs",
"for this experiment to DVC remote storage,"
"re-run this command without '--no-cache'.",
(
"for this experiment to DVC remote storage,"
"re-run this command without '--no-cache'."
),
)
return 0
@@ -76,10 +75,7 @@ def add_parser(experiments_subparsers, parent_parser):
"--no-cache",
action="store_false",
dest="push_cache",
help=(
"Do not push cached outputs for this experiment to DVC remote "
"storage."
),
help="Do not push cached outputs for this experiment to DVC remote storage.",
)
experiments_push_parser.add_argument(
"-r",
@@ -93,10 +89,7 @@ def add_parser(experiments_subparsers, parent_parser):
"--jobs",
type=int,
metavar="<number>",
help=(
"Number of jobs to run simultaneously when pushing to DVC remote "
"storage."
),
help="Number of jobs to run simultaneously when pushing to DVC remote storage.",
)
experiments_push_parser.add_argument(
"--run-cache",
+25
View File
@@ -0,0 +1,25 @@
import logging
from dvc.cli.command import CmdBase
logger = logging.getLogger(__name__)
class CmdQueueWorker(CmdBase):
"""Run the exp queue worker."""
def run(self):
self.repo.experiments.celery_queue.worker.start(self.args.name)
return 0
def add_parser(experiments_subparsers, parent_parser):
QUEUE_WORKER_HELP = "Run the exp queue worker."
parser = experiments_subparsers.add_parser(
"queue-worker",
parents=[parent_parser],
description=QUEUE_WORKER_HELP,
add_help=False,
)
parser.add_argument("name", help="Celery worker name.")
parser.set_defaults(func=CmdQueueWorker)
+4 -6
View File
@@ -10,23 +10,21 @@ logger = logging.getLogger(__name__)
class CmdExperimentsRemove(CmdBase):
def raise_error_if_all_disabled(self):
def check_arguments(self):
if not any(
[
self.args.experiment,
self.args.all_commits,
self.args.rev,
self.args.queue,
]
):
) ^ bool(self.args.experiment):
raise InvalidArgumentError(
"Either provide an `experiment` argument, or use the "
"`--rev` or `--all-commits` flag."
"`--rev` or `--all-commits` or `--queue` flag."
)
def run(self):
self.raise_error_if_all_disabled()
self.check_arguments()
removed_list = self.repo.experiments.remove(
exp_names=self.args.experiment,
+2 -6
View File
@@ -17,13 +17,10 @@ class CmdExperimentsRun(CmdRepro):
if self.args.checkpoint_resume:
if self.args.reset:
raise InvalidArgumentError(
"--reset and --rev are mutually exclusive."
)
raise InvalidArgumentError("--reset and --rev are mutually exclusive.")
if not (self.args.queue or self.args.tmp_dir):
raise InvalidArgumentError(
"--rev can only be used in conjunction with "
"--queue or --temp."
"--rev can only be used in conjunction with --queue or --temp."
)
if self.args.reset:
@@ -51,7 +48,6 @@ class CmdExperimentsRun(CmdRepro):
def add_parser(experiments_subparsers, parent_parser):
EXPERIMENTS_RUN_HELP = "Run or resume an experiment."
experiments_run_parser = experiments_subparsers.add_parser(
"run",
+78
View File
@@ -0,0 +1,78 @@
import argparse
import logging
from dvc.cli.command import CmdBase
from dvc.cli.utils import append_doc_link
from dvc.exceptions import DvcException
from dvc.ui import ui
logger = logging.getLogger(__name__)
class CmdExperimentsSave(CmdBase):
def run(self):
try:
ref = self.repo.experiments.save(
name=self.args.name,
force=self.args.force,
include_untracked=self.args.include_untracked,
)
except DvcException:
logger.exception("failed to save experiment")
return 1
if self.args.json:
ui.write_json({"ref": ref})
else:
name = self.repo.experiments.get_exact_name([ref])[ref]
ui.write(f"Experiment has been saved as: {name}")
ui.write(
"\nTo promote an experiment to a Git branch run:\n\n"
"\tdvc exp branch <exp> <branch>\n"
)
return 0
def add_parser(experiments_subparsers, parent_parser):
EXPERIMENTS_SAVE_HELP = "Save current workspace as a dvc experiment."
save_parser = experiments_subparsers.add_parser(
"save",
parents=[parent_parser],
description=append_doc_link(EXPERIMENTS_SAVE_HELP, "exp/save"),
help=EXPERIMENTS_SAVE_HELP,
formatter_class=argparse.RawDescriptionHelpFormatter,
)
save_parser.add_argument(
"-f",
"--force",
action="store_true",
default=False,
help="Replace experiment if it already exists.",
)
save_parser.add_argument(
"--json",
"--show-json",
action="store_true",
default=False,
help="Show output in JSON format.",
)
save_parser.add_argument(
"-n",
"--name",
default=None,
help=(
"Human-readable experiment name. If not specified, a name will "
"be auto-generated."
),
metavar="<name>",
)
save_parser.add_argument(
"-I",
"--include-untracked",
action="append",
default=[],
help="List of untracked paths to include in the experiment.",
metavar="<path>",
)
save_parser.set_defaults(func=CmdExperimentsSave)
+37 -39
View File
@@ -4,7 +4,7 @@ import os
import re
from collections import Counter, OrderedDict, defaultdict
from datetime import date, datetime
from typing import TYPE_CHECKING
from typing import TYPE_CHECKING, Any, Dict, Set
from funcy import lmap
@@ -37,9 +37,9 @@ def _update_names(names, items):
def _collect_names(all_experiments, **kwargs):
metric_names = defaultdict(dict)
param_names = defaultdict(dict)
deps_names = set()
metric_names: Dict[str, Dict[str, Any]] = defaultdict(dict)
param_names: Dict[str, Dict[str, Any]] = defaultdict(dict)
deps_names: Set[str] = set()
for _, experiments in all_experiments.items():
for exp_data in experiments.values():
@@ -62,7 +62,7 @@ experiment_types = {
}
def _collect_rows(
def _collect_rows( # noqa: C901
base_rev,
experiments,
all_headers,
@@ -77,16 +77,14 @@ def _collect_rows(
fill_value=FILL_VALUE,
iso=False,
):
from scmrepo.git import Git
from dvc.scm import Git
if sort_by:
sort_path, sort_name, sort_type = _sort_column(
sort_by, metric_names, param_names
)
reverse = sort_order == "desc"
experiments = _sort_exp(
experiments, sort_path, sort_name, sort_type, reverse
)
experiments = _sort_exp(experiments, sort_path, sort_name, sort_type, reverse)
new_checkpoint = True
for i, (rev, results) in enumerate(experiments.items()):
@@ -95,11 +93,8 @@ def _collect_rows(
exp = results.get("data", {})
if exp.get("running"):
state = "Running"
elif exp.get("queued"):
state = "Queued"
else:
state = exp.get("status")
if state == "Success":
state = fill_value
is_baseline = rev == "baseline"
@@ -119,9 +114,7 @@ def _collect_rows(
typ = "baseline"
elif tip:
if tip == parent_tip:
typ = (
"checkpoint_tip" if new_checkpoint else "checkpoint_commit"
)
typ = "checkpoint_tip" if new_checkpoint else "checkpoint_commit"
elif parent_rev == base_rev:
typ = "checkpoint_base"
else:
@@ -138,9 +131,7 @@ def _collect_rows(
row_dict["Experiment"] = exp.get("name", "")
row_dict["rev"] = name_rev
row_dict["typ"] = typ
row_dict["Created"] = _format_time(
exp.get("timestamp"), fill_value, iso
)
row_dict["Created"] = format_time(exp.get("timestamp"), fill_value, iso)
row_dict["parent"] = parent
row_dict["State"] = state
row_dict["Executor"] = exp.get("executor", fill_value)
@@ -218,7 +209,7 @@ def _sort_exp(experiments, sort_path, sort_name, typ, reverse):
return ret
def _format_time(datetime_obj, fill_value=FILL_VALUE, iso=False):
def format_time(datetime_obj, fill_value=FILL_VALUE, iso=False):
if datetime_obj is None:
return fill_value
@@ -317,7 +308,7 @@ def baseline_styler(typ):
return {"style": "bold"} if typ == "baseline" else {}
def show_experiments(
def show_experiments( # noqa: C901
all_experiments,
keep=None,
drop=None,
@@ -331,7 +322,7 @@ def show_experiments(
metric_names, param_names, deps_names = _collect_names(all_experiments)
headers = [
headers_list = [
"Experiment",
"rev",
"typ",
@@ -343,13 +334,13 @@ def show_experiments(
names = {**metric_names, **param_names}
counter = Counter(flatten_list([list(a.keys()) for a in names.values()]))
counter.update(headers)
counter.update(headers_list)
metric_headers = _normalize_headers(metric_names, counter)
param_headers = _normalize_headers(param_names, counter)
td = experiments_table(
all_experiments,
headers,
headers_list,
metric_headers,
metric_names,
param_headers,
@@ -362,7 +353,7 @@ def show_experiments(
kwargs.get("iso"),
)
if keep:
for col in td.keys():
for col in td.keys(): # noqa: SIM118
if re.match(keep, col):
td.protect(col)
@@ -374,9 +365,7 @@ def show_experiments(
if not csv:
merge_headers = ["Experiment", "rev", "typ", "parent"]
td.column("Experiment")[:] = map(
prepare_exp_id, td.as_dict(merge_headers)
)
td.column("Experiment")[:] = map(prepare_exp_id, td.as_dict(merge_headers))
td.drop(*merge_headers[1:])
headers = {
@@ -413,13 +402,13 @@ def show_experiments(
cols_to_drop = set()
if drop is not None:
cols_to_drop = {col for col in td.keys() if re.match(drop, col)}
cols_to_drop = {col for col in td.keys() if re.match(drop, col)} # noqa: SIM118
if pcp:
cols_to_drop.add("Created")
td.drop(*cols_to_drop)
if pcp:
subset = {x for x in td.keys() if x != "Experiment"}
subset = {x for x in td.keys() if x != "Experiment"} # noqa: SIM118
td.dropna(
"rows",
how="all",
@@ -476,6 +465,8 @@ class CmdExperimentsShow(CmdBase):
all_branches=self.args.all_branches,
all_tags=self.args.all_tags,
all_commits=self.args.all_commits,
hide_queued=self.args.hide_queued,
hide_failed=self.args.hide_failed,
revs=self.args.rev,
num=self.args.num,
sha_only=self.args.sha,
@@ -490,12 +481,10 @@ class CmdExperimentsShow(CmdBase):
ui.write_json(all_experiments, default=_format_json)
else:
precision = (
self.args.precision or None
if self.args.csv
else DEFAULT_PRECISION
self.args.precision or None if self.args.csv else DEFAULT_PRECISION
)
fill_value = "" if self.args.csv else FILL_VALUE
iso = True if self.args.csv else False
iso = self.args.csv
show_experiments(
all_experiments,
@@ -581,10 +570,7 @@ def add_parser(experiments_subparsers, parent_parser):
)
experiments_show_parser.add_argument(
"--sort-order",
help=(
"Sort order to use with --sort-by."
" Defaults to ascending ('asc')."
),
help="Sort order to use with --sort-by. Defaults to ascending ('asc').",
choices=("asc", "desc"),
default="asc",
)
@@ -594,6 +580,18 @@ def add_parser(experiments_subparsers, parent_parser):
default=False,
help="Always show git commit SHAs instead of branch/tag names.",
)
experiments_show_parser.add_argument(
"--hide-failed",
action="store_true",
default=False,
help="Hide failed experiments in the table.",
)
experiments_show_parser.add_argument(
"--hide-queued",
action="store_true",
default=False,
help="Hide queued experiments in the table.",
)
experiments_show_parser.add_argument(
"--json",
"--show-json",
+1 -1
View File
@@ -16,7 +16,7 @@ class CmdFreezeBase(CmdBase):
try:
func(target)
except DvcException:
logger.exception(f"failed to {name} '{target}'")
logger.exception("failed to %s '%s'", name, target)
ret = 1
return ret
+63 -14
View File
@@ -10,30 +10,42 @@ logger = logging.getLogger(__name__)
class CmdGC(CmdBase):
def run(self):
from dvc.repo.gc import _raise_error_if_all_disabled
def run(self): # noqa: C901
from dvc.repo.gc import _validate_args
_raise_error_if_all_disabled(
_validate_args(
all_branches=self.args.all_branches,
all_tags=self.args.all_tags,
all_commits=self.args.all_commits,
all_experiments=self.args.all_experiments,
commit_date=self.args.commit_date,
workspace=self.args.workspace,
rev=self.args.rev,
num=self.args.num,
)
if self.args.rev:
self.args.num = self.args.num or 1
msg = "This will remove all cache except items used in "
msg += "the workspace"
if self.args.all_commits:
msg += " and all git commits"
elif self.args.all_branches and self.args.all_tags:
msg += " and all git branches and tags"
elif self.args.all_branches:
msg += " and all git branches"
elif self.args.all_tags:
msg += " and all git tags"
elif self.args.all_experiments:
msg += " and all experiments"
else:
if self.args.all_branches and self.args.all_tags:
msg += " and all git branches and tags"
elif self.args.all_branches:
msg += " and all git branches"
elif self.args.all_tags:
msg += " and all git tags"
if self.args.commit_date:
msg += f" and all git commits before date {self.args.commit_date}"
if self.args.rev:
msg += f" and last {self.args.num} commits from {self.args.rev}"
if self.args.all_experiments:
msg += " and all experiments"
if self.args.repos:
msg += " of the current and the following repos:"
@@ -53,12 +65,15 @@ class CmdGC(CmdBase):
all_tags=self.args.all_tags,
all_commits=self.args.all_commits,
all_experiments=self.args.all_experiments,
commit_date=self.args.commit_date,
cloud=self.args.cloud,
remote=self.args.remote,
force=self.args.force,
jobs=self.args.jobs,
repos=self.args.repos,
workspace=self.args.workspace,
rev=self.args.rev,
num=self.args.num,
)
return 0
@@ -83,6 +98,26 @@ def add_parser(subparsers, parent_parser):
default=False,
help="Keep data files used in the current workspace.",
)
gc_parser.add_argument(
"--rev",
type=str,
default=None,
help="Keep data files used in the specified <commit>.",
metavar="<commit>",
)
gc_parser.add_argument(
"-n",
"--num",
type=int,
dest="num",
metavar="<num>",
help=(
"Keep data files used in the last `num` commits "
"starting from the `--rev` <commit>. "
"Only used if `--rev` is also provided. "
"Defaults to `1`."
),
)
gc_parser.add_argument(
"-a",
"--all-branches",
@@ -104,6 +139,18 @@ def add_parser(subparsers, parent_parser):
default=False,
help="Keep data files for all Git commits.",
)
gc_parser.add_argument(
"--date",
type=str,
dest="commit_date",
metavar="<YYYY-MM-DD>",
default=None,
help=(
"Keep cached data referenced in the commits after ( inclusive )"
" a certain time. Date must match the extended ISO 8601 format "
"(YYYY-MM-DD)."
),
)
gc_parser.add_argument(
"--all-experiments",
action="store_true",
@@ -146,9 +193,11 @@ def add_parser(subparsers, parent_parser):
dest="repos",
type=str,
nargs="*",
help="Keep data files required by these projects "
"in addition to the current one. "
"Useful if you share a single cache across repos.",
help=(
"Keep data files required by these projects "
"in addition to the current one. "
"Useful if you share a single cache across repos."
),
metavar="<paths>",
)
gc_parser.set_defaults(func=CmdGC)
+11 -10
View File
@@ -3,10 +3,9 @@ import logging
from dvc.cli import completion
from dvc.cli.command import CmdBaseNoRepo
from dvc.cli.utils import append_doc_link
from dvc.exceptions import DvcException
from ..cli.utils import append_doc_link
logger = logging.getLogger(__name__)
@@ -16,9 +15,7 @@ class CmdGet(CmdBaseNoRepo):
from dvc.ui import ui
try:
url = get_url(
self.args.path, repo=self.args.url, rev=self.args.rev
)
url = get_url(self.args.path, repo=self.args.url, rev=self.args.rev)
ui.write(url, force=True)
except DvcException:
logger.exception("failed to show URL")
@@ -34,6 +31,7 @@ class CmdGet(CmdBaseNoRepo):
def _get_file_from_repo(self):
from dvc.repo import Repo
from dvc.scm import CloneError
try:
Repo.get(
@@ -44,11 +42,12 @@ class CmdGet(CmdBaseNoRepo):
jobs=self.args.jobs,
)
return 0
except CloneError:
logger.exception("failed to get '%s'", self.args.path)
return 1
except DvcException:
logger.exception(
"failed to get '{}' from '{}'".format(
self.args.path, self.args.url
)
"failed to get '%s' from '%s'", self.args.path, self.args.url
)
return 1
@@ -84,8 +83,10 @@ def add_parser(subparsers, parent_parser):
get_parser.add_argument(
"--show-url",
action="store_true",
help="Print the storage location (URL) the target data would be "
"downloaded from, and exit.",
help=(
"Print the storage location (URL) the target data would be "
"downloaded from, and exit."
),
)
get_parser.add_argument(
"-j",
+2 -3
View File
@@ -3,10 +3,9 @@ import logging
from dvc.cli import completion
from dvc.cli.command import CmdBaseNoRepo
from dvc.cli.utils import append_doc_link
from dvc.exceptions import DvcException
from ..cli.utils import append_doc_link
logger = logging.getLogger(__name__)
@@ -18,7 +17,7 @@ class CmdGetUrl(CmdBaseNoRepo):
Repo.get_url(self.args.url, out=self.args.out, jobs=self.args.jobs)
return 0
except DvcException:
logger.exception(f"failed to get '{self.args.url}'")
logger.exception("failed to get '%s'", self.args.url)
return 1
+5 -5
View File
@@ -64,17 +64,17 @@ class CmdPrePush(CmdHookBase):
class CmdMergeDriver(CmdHookBase):
def _run(self):
from dvc.dvcfile import Dvcfile
from dvc.dvcfile import load_file
from dvc.repo import Repo
dvc = Repo()
try:
ancestor = Dvcfile(dvc, self.args.ancestor, verify=False)
our = Dvcfile(dvc, self.args.our, verify=False)
their = Dvcfile(dvc, self.args.their, verify=False)
ancestor = load_file(dvc, self.args.ancestor, verify=False)
our = load_file(dvc, self.args.our, verify=False)
their = load_file(dvc, self.args.their, verify=False)
our.merge(ancestor, their)
our.merge(ancestor, their, allowed=["add", "remove", "change"])
return 0
finally:
+25 -11
View File
@@ -11,6 +11,8 @@ logger = logging.getLogger(__name__)
class CmdImport(CmdBase):
def run(self):
from dvc.scm import CloneError
try:
self.repo.imp(
self.args.url,
@@ -19,20 +21,29 @@ class CmdImport(CmdBase):
fname=self.args.file,
rev=self.args.rev,
no_exec=self.args.no_exec,
no_download=self.args.no_download,
desc=self.args.desc,
type=self.args.type,
labels=self.args.labels,
meta=self.args.meta,
jobs=self.args.jobs,
)
except CloneError:
logger.exception("failed to import '%s'", self.args.path)
return 1
except DvcException:
logger.exception(
"failed to import '{}' from '{}'.".format(
self.args.path, self.args.url
)
"failed to import '%s' from '%s'.",
self.args.path,
self.args.url,
)
return 1
return 0
def add_parser(subparsers, parent_parser):
from .add import _add_annotating_args
IMPORT_HELP = (
"Download file or directory tracked by DVC or by Git "
"into the workspace, and track it."
@@ -69,19 +80,20 @@ def add_parser(subparsers, parent_parser):
help="Specify name of the .dvc file this command will generate.",
metavar="<filename>",
)
import_parser.add_argument(
no_download_exec_group = import_parser.add_mutually_exclusive_group()
no_download_exec_group.add_argument(
"--no-exec",
action="store_true",
default=False,
help="Only create .dvc file without actually downloading it.",
help="Only create .dvc file without actually importing target data.",
)
import_parser.add_argument(
"--desc",
type=str,
metavar="<text>",
no_download_exec_group.add_argument(
"--no-download",
action="store_true",
default=False,
help=(
"User description of the data (optional). "
"This doesn't affect any DVC operations."
"Create .dvc file including target data hash value(s)"
" but do not actually download the file(s)."
),
)
import_parser.add_argument(
@@ -94,4 +106,6 @@ def add_parser(subparsers, parent_parser):
),
metavar="<number>",
)
_add_annotating_args(import_parser)
import_parser.set_defaults(func=CmdImport)
+46 -30
View File
@@ -17,26 +17,32 @@ class CmdImportUrl(CmdBase):
out=self.args.out,
fname=self.args.file,
no_exec=self.args.no_exec,
no_download=self.args.no_download,
remote=self.args.remote,
to_remote=self.args.to_remote,
desc=self.args.desc,
type=self.args.type,
labels=self.args.labels,
meta=self.args.meta,
jobs=self.args.jobs,
version_aware=self.args.version_aware,
)
except DvcException:
logger.exception(
"failed to import {}. You could also try downloading "
"it manually, and adding it with `dvc add`.".format(
self.args.url
)
(
"failed to import %s. You could also try downloading "
"it manually, and adding it with `dvc add`."
),
self.args.url,
)
return 1
return 0
def add_parser(subparsers, parent_parser):
IMPORT_HELP = (
"Download or copy file from URL and take it under DVC control."
)
from .add import _add_annotating_args
IMPORT_HELP = "Download or copy file from URL and take it under DVC control."
import_parser = subparsers.add_parser(
"import-url",
@@ -47,16 +53,18 @@ def add_parser(subparsers, parent_parser):
)
import_parser.add_argument(
"url",
help="Location of the data to download. Supported URLs:\n"
"/absolute/path/to/file/or/dir\n"
"relative/path/to/file/or/dir\n"
"C:\\\\path\\to\\file\\or\\dir\n"
"https://example.com/path/to/file\n"
"s3://bucket/key/path\n"
"gs://bucket/path/to/file/or/dir\n"
"hdfs://example.com/path/to/file\n"
"ssh://example.com/absolute/path/to/file/or/dir\n"
"remote://remote_name/path/to/file/or/dir (see `dvc remote`)",
help=(
"Location of the data to download. Supported URLs:\n"
"/absolute/path/to/file/or/dir\n"
"relative/path/to/file/or/dir\n"
"C:\\\\path\\to\\file\\or\\dir\n"
"https://example.com/path/to/file\n"
"s3://bucket/key/path\n"
"gs://bucket/path/to/file/or/dir\n"
"hdfs://example.com/path/to/file\n"
"ssh://example.com/absolute/path/to/file/or/dir\n"
"remote://remote_name/path/to/file/or/dir (see `dvc remote`)"
),
)
import_parser.add_argument(
"out", nargs="?", help="Destination path to put files to."
@@ -66,12 +74,6 @@ def add_parser(subparsers, parent_parser):
help="Specify name of the .dvc file this command will generate.",
metavar="<filename>",
).complete = completion.DIR
import_parser.add_argument(
"--no-exec",
action="store_true",
default=False,
help="Only create .dvc file without actually downloading it.",
)
import_parser.add_argument(
"--to-remote",
action="store_true",
@@ -84,6 +86,22 @@ def add_parser(subparsers, parent_parser):
help="Remote storage to download to",
metavar="<name>",
)
no_download_exec_group = import_parser.add_mutually_exclusive_group()
no_download_exec_group.add_argument(
"--no-exec",
action="store_true",
default=False,
help="Only create .dvc file without actually importing target data.",
)
no_download_exec_group.add_argument(
"--no-download",
action="store_true",
default=False,
help=(
"Create .dvc file including target data hash value(s)"
" but do not actually download the file(s)."
),
)
import_parser.add_argument(
"-j",
"--jobs",
@@ -95,12 +113,10 @@ def add_parser(subparsers, parent_parser):
metavar="<number>",
)
import_parser.add_argument(
"--desc",
type=str,
metavar="<text>",
help=(
"User description of the data (optional). "
"This doesn't affect any DVC operations."
),
"--version-aware",
action="store_true",
default=False,
help="Import using cloud versioning. Implied if the URL contains a version ID.",
)
_add_annotating_args(import_parser)
import_parser.set_defaults(func=CmdImportUrl)
+4 -4
View File
@@ -75,8 +75,9 @@ def add_parser(subparsers, parent_parser):
"--no-scm",
action="store_true",
default=False,
help="Initiate DVC in directory that is "
"not tracked by any SCM tool (e.g. Git).",
help=(
"Initiate DVC in directory that is not tracked by any SCM tool (e.g. Git)."
),
)
init_parser.add_argument(
"-f",
@@ -84,8 +85,7 @@ def add_parser(subparsers, parent_parser):
action="store_true",
default=False,
help=(
"Overwrite existing '.dvc/' directory. "
"This operation removes local cache."
"Overwrite existing '.dvc/' directory. This operation removes local cache."
),
)
init_parser.add_argument(
+4 -2
View File
@@ -31,7 +31,9 @@ def add_parser(subparsers, parent_parser):
"--use-pre-commit-tool",
action="store_true",
default=False,
help="Install DVC hooks using pre-commit "
"(https://pre-commit.com) if it is installed.",
help=(
"Install DVC hooks using pre-commit "
"(https://pre-commit.com) if it is installed."
),
)
install_parser.set_defaults(func=CmdInstall)
+1 -1
View File
@@ -42,7 +42,7 @@ class CmdList(CmdBaseNoRepo):
ui.write("\n".join(entries))
return 0
except DvcException:
logger.exception(f"failed to list '{self.args.url}'")
logger.exception("failed to list '%s'", self.args.url)
return 1
+1 -1
View File
@@ -20,7 +20,7 @@ class LsColors:
else:
self._codes[code] = color
def format(self, entry):
def format(self, entry): # noqa: A003
text = entry["path"]
if entry.get("isout", False) and "out" in self._codes:
+43
View File
@@ -0,0 +1,43 @@
import argparse
import logging
from dvc.cli.command import CmdBaseNoRepo
from dvc.cli.utils import append_doc_link
from dvc.ui import ui
from .ls import _prettify
logger = logging.getLogger(__name__)
class CmdListUrl(CmdBaseNoRepo):
def run(self):
from dvc.repo import Repo
entries = Repo.ls_url(self.args.url, recursive=self.args.recursive)
if entries:
entries = _prettify(entries, with_color=True)
ui.write("\n".join(entries))
return 0
def add_parser(subparsers, parent_parser):
LS_HELP = "List directory contents from URL."
lsurl_parser = subparsers.add_parser(
"list-url",
aliases=["ls-url"],
parents=[parent_parser],
description=append_doc_link(LS_HELP, "list-url"),
help=LS_HELP,
formatter_class=argparse.RawDescriptionHelpFormatter,
)
lsurl_parser.add_argument(
"url", help="See `dvc import-url -h` for full list of supported URLs."
)
lsurl_parser.add_argument(
"-R",
"--recursive",
action="store_true",
help="Recursively list files.",
)
lsurl_parser.set_defaults(func=CmdListUrl)
+13 -31
View File
@@ -1,4 +1,5 @@
import argparse
from typing import Dict, List
from dvc.cli.command import CmdBase
from dvc.cli.utils import append_doc_link, fix_subparsers
@@ -6,7 +7,6 @@ from dvc.commands.config import CmdConfig
from dvc.compare import TabularData
from dvc.config import ConfigError
from dvc.exceptions import DvcException
from dvc.types import Dict, List
from dvc.ui import ui
from dvc.utils import format_link
@@ -18,7 +18,6 @@ class MachineDisabledError(ConfigError):
class CmdMachineConfig(CmdConfig):
def __init__(self, args):
super().__init__(args)
if not self.config["feature"].get("machine", False):
raise MachineDisabledError
@@ -163,20 +162,18 @@ class CmdMachineRename(CmdBase):
all_config = self.config.load_config_to_level(None)
if self.args.new in all_config.get("machine", {}):
raise ConfigError(
"Rename failed. Machine '{}' already exists.".format(
self.args.new
)
f"Rename failed. Machine '{self.args.new}' already exists."
)
ui.write(f"Rename machine '{self.args.name}' to '{self.args.new}'.")
def run(self):
self._check_before_rename()
with self.config.edit(self.args.level) as conf:
self._check_exists(conf)
conf["machine"][self.args.new] = conf["machine"][self.args.name]
try:
assert self.repo.machine
self.repo.machine.rename(self.args.name, self.args.new)
except DvcException as error:
del conf["machine"][self.args.new]
@@ -199,7 +196,7 @@ class CmdMachineDefault(CmdMachineConfig):
if self.args.name is None and not self.args.unset:
conf = self.config.read(self.args.level)
try:
print(conf["core"]["machine"])
ui.write(conf["core"]["machine"])
except KeyError:
ui.write("No default machine set")
return 1
@@ -208,9 +205,7 @@ class CmdMachineDefault(CmdMachineConfig):
if self.args.unset:
conf["core"].pop("machine", None)
else:
merged_conf = self.config.load_config_to_level(
self.args.level
)
merged_conf = self.config.load_config_to_level(self.args.level)
if (
self.args.name in conf["machine"]
or self.args.name in merged_conf["machine"]
@@ -218,8 +213,7 @@ class CmdMachineDefault(CmdMachineConfig):
conf["core"]["machine"] = self.args.name
else:
raise ConfigError(
"default machine must be present in machine "
"list."
"default machine must be present in machine list."
)
return 0
@@ -250,7 +244,6 @@ class CmdMachineStatus(CmdBase):
all_status: List[Dict],
td: TabularData,
):
if not all_status:
row = [
name,
@@ -324,7 +317,7 @@ def add_parser(subparsers, parent_parser):
machine_subparsers = machine_parser.add_subparsers(
dest="cmd",
help="Use `dvc machine CMD --help` for " "command-specific help.",
help="Use `dvc machine CMD --help` for command-specific help.",
)
fix_subparsers(machine_subparsers)
@@ -342,8 +335,7 @@ def add_parser(subparsers, parent_parser):
"cloud",
help="Machine cloud. See full list of supported clouds at {}".format(
format_link(
"https://github.com/iterative/"
"terraform-provider-iterative#machine"
"https://github.com/iterative/terraform-provider-iterative#machine"
)
),
)
@@ -371,9 +363,7 @@ def add_parser(subparsers, parent_parser):
help=machine_DEFAULT_HELP,
formatter_class=argparse.RawDescriptionHelpFormatter,
)
machine_default_parser.add_argument(
"name", nargs="?", help="Name of the machine"
)
machine_default_parser.add_argument("name", nargs="?", help="Name of the machine")
machine_default_parser.add_argument(
"-u",
"--unset",
@@ -413,9 +403,7 @@ def add_parser(subparsers, parent_parser):
formatter_class=argparse.RawDescriptionHelpFormatter,
)
machine_modify_parser.add_argument("name", help="Name of the machine")
machine_modify_parser.add_argument(
"option", help="Name of the option to modify."
)
machine_modify_parser.add_argument("option", help="Name of the option to modify.")
machine_modify_parser.add_argument(
"value", nargs="?", help="(optional) Value of the option."
)
@@ -448,9 +436,7 @@ def add_parser(subparsers, parent_parser):
help=machine_REMOVE_HELP,
formatter_class=argparse.RawDescriptionHelpFormatter,
)
machine_remove_parser.add_argument(
"name", help="Name of the machine to remove."
)
machine_remove_parser.add_argument("name", help="Name of the machine to remove.")
machine_remove_parser.set_defaults(func=CmdMachineRemove)
machine_CREATE_HELP = "Create and start a machine instance."
@@ -461,14 +447,10 @@ def add_parser(subparsers, parent_parser):
help=machine_CREATE_HELP,
formatter_class=argparse.RawDescriptionHelpFormatter,
)
machine_create_parser.add_argument(
"name", help="Name of the machine to create."
)
machine_create_parser.add_argument("name", help="Name of the machine to create.")
machine_create_parser.set_defaults(func=CmdMachineCreate)
machine_STATUS_HELP = (
"List the status of running instances for one/all machines."
)
machine_STATUS_HELP = "List the status of running instances for one/all machines."
machine_status_parser = machine_subparsers.add_parser(
"status",
parents=[parent_parser],
+2 -6
View File
@@ -14,9 +14,7 @@ class CmdMove(CmdBase):
try:
self.repo.move(self.args.src, self.args.dst)
except DvcException:
msg = "failed to move '{}' -> '{}'".format(
self.args.src, self.args.dst
)
msg = f"failed to move '{self.args.src}' -> '{self.args.dst}'"
logger.exception(msg)
return 1
return 0
@@ -40,7 +38,5 @@ def add_parser(subparsers, parent_parser):
move_parser.add_argument(
"src", help="Source path to a data file or directory."
).complete = completion.FILE
move_parser.add_argument(
"dst", help="Destination path."
).complete = completion.FILE
move_parser.add_argument("dst", help="Destination path.").complete = completion.FILE
move_parser.set_defaults(func=CmdMove)
+1 -1
View File
@@ -79,7 +79,7 @@ def add_parser(subparsers, parent_parser):
params_diff_parser.add_argument(
"b_rev",
nargs="?",
help=("New Git commit to compare (defaults to the current workspace)"),
help="New Git commit to compare (defaults to the current workspace)",
)
params_diff_parser.add_argument(
"--targets",
+137 -101
View File
@@ -18,12 +18,53 @@ logger = logging.getLogger(__name__)
def _show_json(renderers, split=False):
from dvc.render.convert import to_json
result = {
renderer.name: to_json(renderer, split) for renderer in renderers
}
result = {renderer.name: to_json(renderer, split) for renderer in renderers}
ui.write_json(result)
def _adjust_vega_renderers(renderers):
from dvc.render import REVISION_FIELD, VERSION_FIELD
from dvc_render import VegaRenderer
for r in renderers:
if isinstance(r, VegaRenderer):
if _data_versions_count(r) > 1:
summary = _summarize_version_infos(r)
for dp in r.datapoints:
vi = dp.pop(VERSION_FIELD, {})
keys = list(vi.keys())
for key in keys:
if not (len(summary.get(key, set())) > 1):
vi.pop(key)
if vi:
dp["rev"] = "::".join(vi.values())
else:
for dp in r.datapoints:
dp[REVISION_FIELD] = dp[VERSION_FIELD]["revision"]
dp.pop(VERSION_FIELD, {})
def _summarize_version_infos(renderer):
from collections import defaultdict
from dvc.render import VERSION_FIELD
result = defaultdict(set)
for dp in renderer.datapoints:
for key, value in dp.get(VERSION_FIELD, {}).items():
result[key].add(value)
return dict(result)
def _data_versions_count(renderer):
from itertools import product
summary = _summarize_version_infos(renderer)
x = product(summary.get("filename", {None}), summary.get("field", {None}))
return len(set(x))
class CmdPlots(CmdBase):
def _func(self, *args, **kwargs):
raise NotImplementedError
@@ -35,89 +76,93 @@ class CmdPlots(CmdBase):
props = {p: getattr(self.args, p) for p in PLOT_PROPS}
return {k: v for k, v in props.items() if v is not None}
def run(self):
def _config_files(self):
if self.args.from_config:
return {self.args.from_config}
def _html_template_path(self):
html_template_path = self.args.html_template
if not html_template_path:
html_template_path = self.repo.config.get("plots", {}).get(
"html_template", None
)
if html_template_path and not os.path.isabs(html_template_path):
assert self.repo.dvc_dir
html_template_path = os.path.join(self.repo.dvc_dir, html_template_path)
return html_template_path # noqa: RET504
def run(self) -> int: # noqa: C901
from pathlib import Path
from dvc.render.match import match_defs_renderers
from dvc_render import render_html
from dvc.render.match import match_renderers
if self.args.show_vega:
if not self.args.targets:
logger.error("please specify a target for `--show-vega`")
return 1
if len(self.args.targets) > 1:
logger.error(
"you can only specify one target for `--show-vega`"
)
logger.error("you can only specify one target for `--show-vega`")
return 1
if self.args.json:
logger.error(
"'--show-vega' and '--json' are mutually exclusive "
"options."
"'--show-vega' and '--json' are mutually exclusive options."
)
return 1
try:
plots_data = self._func(
targets=self.args.targets, props=self._props()
targets=self.args.targets,
props=self._props(),
config_files=self._config_files(),
)
if not plots_data:
ui.error_write(
"No plots were loaded, "
"visualization file will not be created."
"No plots were loaded, visualization file will not be created."
)
out: str = self.args.out or "dvc_plots"
renderers_out = (
out if self.args.json else os.path.join(out, "static")
)
renderers = match_renderers(
plots_data=plots_data, out=renderers_out
out: str = self.args.out or self.repo.config.get("plots", {}).get(
"out_dir", "dvc_plots"
)
renderers_out = out if self.args.json else os.path.join(out, "static")
renderers = match_defs_renderers(
data=plots_data,
out=renderers_out,
templates_dir=self.repo.plots.templates_dir,
)
if self.args.json:
_show_json(renderers, self.args.split)
return 0
_adjust_vega_renderers(renderers)
if self.args.show_vega:
renderer = first(filter(lambda r: r.TYPE == "vega", renderers))
if renderer:
ui.write_json(json.loads(renderer.get_filled_template()))
return 0
if self.args.json:
_show_json(renderers, self.args.split)
return 0
html_template_path = self.args.html_template
if not html_template_path:
html_template_path = self.repo.config.get("plots", {}).get(
"html_template", None
)
if html_template_path and not os.path.isabs(
html_template_path
):
html_template_path = os.path.join(
self.repo.dvc_dir, html_template_path
)
output_file: Path = (Path.cwd() / out).resolve() / "index.html"
render_html(
renderers=renderers,
output_file=output_file,
template_path=html_template_path,
)
if renderers:
render_html(
renderers=renderers,
output_file=output_file,
template_path=self._html_template_path(),
)
ui.write(output_file.as_uri())
auto_open = self.repo.config["plots"].get("auto_open", False)
if self.args.open or auto_open:
if not auto_open:
ui.write(
"To enable auto opening, you can run:\n"
"\n"
"\tdvc config plots.auto_open true"
)
return ui.open_browser(output_file)
ui.write(output_file.as_uri())
auto_open = self.repo.config["plots"].get("auto_open", False)
if self.args.open or auto_open:
if not auto_open:
ui.write(
"To enable auto opening, you can run:\n"
"\n"
"\tdvc config plots.auto_open true"
)
return ui.open_browser(output_file)
return 0
@@ -154,29 +199,21 @@ class CmdPlotsModify(CmdPlots):
class CmdPlotsTemplates(CmdBase):
TEMPLATES_CHOICES = [
"simple",
"linear",
"confusion",
"confusion_normalized",
"scatter",
"smooth",
]
def run(self):
from dvc_render.vega_templates import dump_templates
from dvc.exceptions import InvalidArgumentError
from dvc_render.vega_templates import TEMPLATES
try:
out = (
os.path.join(os.getcwd(), self.args.out)
if self.args.out
else self.repo.plots.templates_dir
)
target = self.args.template
if target:
for template in TEMPLATES:
if target == template.DEFAULT_NAME:
ui.write_json(template.DEFAULT_CONTENT)
return 0
raise InvalidArgumentError(f"Unexpected template: {target}.")
targets = [self.args.target] if self.args.target else None
dump_templates(output=out, targets=targets)
templates_path = os.path.relpath(out, os.getcwd())
ui.write(f"Templates have been written into '{templates_path}'.")
for template in TEMPLATES:
ui.write(template.DEFAULT_NAME)
return 0
except DvcException:
@@ -185,10 +222,7 @@ class CmdPlotsTemplates(CmdBase):
def add_parser(subparsers, parent_parser):
PLOTS_HELP = (
"Commands to visualize and compare plot metrics in structured files "
"(JSON, YAML, CSV, TSV)."
)
PLOTS_HELP = "Commands to visualize and compare plot data."
plots_parser = subparsers.add_parser(
"plots",
@@ -204,7 +238,9 @@ def add_parser(subparsers, parent_parser):
fix_subparsers(plots_subparsers)
SHOW_HELP = "Generate plots from metrics files."
SHOW_HELP = (
"Generate plots from target files or from `plots` definitions in `dvc.yaml`."
)
plots_show_parser = plots_subparsers.add_parser(
"show",
parents=[parent_parser],
@@ -215,9 +251,10 @@ def add_parser(subparsers, parent_parser):
plots_show_parser.add_argument(
"targets",
nargs="*",
help="Files to visualize (supports any file, "
"even when not found as `plots` in `dvc.yaml`). "
"Shows all plots by default.",
help=(
"Plots files or plot IDs from `dvc.yaml` to visualize. "
"Shows all plots by default."
),
).complete = completion.FILE
_add_props_arguments(plots_show_parser)
_add_output_argument(plots_show_parser)
@@ -225,8 +262,7 @@ def add_parser(subparsers, parent_parser):
plots_show_parser.set_defaults(func=CmdPlotsShow)
PLOTS_DIFF_HELP = (
"Show multiple versions of plot metrics "
"by plotting them in a single image."
"Show multiple versions of a plot by overlaying them in a single image."
)
plots_diff_parser = plots_subparsers.add_parser(
"diff",
@@ -239,8 +275,8 @@ def add_parser(subparsers, parent_parser):
"--targets",
nargs="*",
help=(
"Specific plots file(s) to visualize "
"(even if not found as `plots` in `dvc.yaml`). "
"Specific plots to visualize. "
"Accepts any file path or plot name from `dvc.yaml` file. "
"Shows all tracked plots by default."
),
metavar="<paths>",
@@ -262,7 +298,7 @@ def add_parser(subparsers, parent_parser):
PLOTS_MODIFY_HELP = (
"Modify display properties of data-series plots "
"(has no effect on image-type plots)."
"defined in stages (has no effect on image plots)."
)
plots_modify_parser = plots_subparsers.add_parser(
"modify",
@@ -272,7 +308,8 @@ def add_parser(subparsers, parent_parser):
formatter_class=argparse.RawDescriptionHelpFormatter,
)
plots_modify_parser.add_argument(
"target", help="Metric file to set properties to"
"target",
help="Plots file to set properties for (defined at the stage level).",
).complete = completion.FILE
_add_props_arguments(plots_modify_parser)
plots_modify_parser.add_argument(
@@ -283,10 +320,7 @@ def add_parser(subparsers, parent_parser):
)
plots_modify_parser.set_defaults(func=CmdPlotsModify)
TEMPLATES_HELP = (
"Write built-in plots templates to a directory "
"(.dvc/plots by default)."
)
TEMPLATES_HELP = "List built-in plots templates or show JSON specification for one."
plots_templates_parser = plots_subparsers.add_parser(
"templates",
parents=[parent_parser],
@@ -295,13 +329,14 @@ def add_parser(subparsers, parent_parser):
formatter_class=argparse.RawDescriptionHelpFormatter,
)
plots_templates_parser.add_argument(
"target",
"template",
default=None,
nargs="?",
choices=CmdPlotsTemplates.TEMPLATES_CHOICES,
help="Template to write. Writes all templates by default.",
help=(
"Template for which to show JSON specification. "
"List all template names by default."
),
)
_add_output_argument(plots_templates_parser, typ="templates")
plots_templates_parser.set_defaults(func=CmdPlotsTemplates)
@@ -311,11 +346,8 @@ def _add_props_arguments(parser):
"--template",
nargs="?",
default=None,
help=(
"Special JSON or HTML schema file to inject with the data. "
"See {}".format(
format_link("https://man.dvc.org/plots#plot-templates")
)
help="Special JSON or HTML schema file to inject with the data. See {}".format(
format_link("https://man.dvc.org/plots#plot-templates")
),
metavar="<path>",
).complete = completion.FILE
@@ -332,9 +364,7 @@ def _add_props_arguments(parser):
default=None, # Use default None to distinguish when it's not used
help="Provided CSV or TSV datafile does not have a header.",
)
parser.add_argument(
"--title", default=None, metavar="<text>", help="Plot title."
)
parser.add_argument("--title", default=None, metavar="<text>", help="Plot title.")
parser.add_argument(
"--x-label", default=None, help="X axis label", metavar="<text>"
)
@@ -382,3 +412,9 @@ def _add_ui_arguments(parser):
help="Custom HTML template for VEGA visualization.",
metavar="<path>",
)
parser.add_argument(
"--from-config",
default=None,
metavar="<path>",
help=argparse.SUPPRESS,
)
+34
View File
@@ -0,0 +1,34 @@
import argparse
from dvc.cli.utils import append_doc_link, fix_subparsers
from dvc.commands.queue import kill, logs, remove, start, status, stop
SUB_COMMANDS = [
start,
stop,
status,
logs,
remove,
kill,
]
def add_parser(subparsers, parent_parser):
QUEUE_HELP = "Commands to manage experiments queue."
queue_parser = subparsers.add_parser(
"queue",
parents=[parent_parser],
description=append_doc_link(QUEUE_HELP, "queue"),
formatter_class=argparse.RawDescriptionHelpFormatter,
help=QUEUE_HELP,
)
queue_subparsers = queue_parser.add_subparsers(
dest="cmd",
help="Use `dvc queue CMD --help` to display command-specific help.",
)
fix_subparsers(queue_subparsers)
for cmd in SUB_COMMANDS:
cmd.add_parser(queue_subparsers, parent_parser)
+45
View File
@@ -0,0 +1,45 @@
import argparse
import logging
from dvc.cli.command import CmdBase
from dvc.cli.utils import append_doc_link
logger = logging.getLogger(__name__)
class CmdQueueKill(CmdBase):
"""Kill exp task in queue."""
def run(self):
self.repo.experiments.celery_queue.kill(
revs=self.args.task, force=self.args.force
)
return 0
def add_parser(queue_subparsers, parent_parser):
QUEUE_KILL_HELP = (
"Gracefully interrupt running experiment queue tasks (equivalent to Ctrl-C)"
)
queue_kill_parser = queue_subparsers.add_parser(
"kill",
parents=[parent_parser],
description=append_doc_link(QUEUE_KILL_HELP, "queue/kill"),
help=QUEUE_KILL_HELP,
formatter_class=argparse.RawDescriptionHelpFormatter,
)
queue_kill_parser.add_argument(
"-f",
"--force",
action="store_true",
default=False,
help="Forcefully and immediately kill running experiment queue tasks",
)
queue_kill_parser.add_argument(
"task",
nargs="*",
help="Tasks in queue to kill.",
metavar="<task>",
)
queue_kill_parser.set_defaults(func=CmdQueueKill)
+54
View File
@@ -0,0 +1,54 @@
import argparse
import logging
from dvc.cli.command import CmdBase
from dvc.cli.utils import append_doc_link
logger = logging.getLogger(__name__)
class CmdQueueLogs(CmdBase):
"""Show output logs for a queued experiment."""
def run(self):
self.repo.experiments.celery_queue.logs(
rev=self.args.task,
encoding=self.args.encoding,
follow=self.args.follow,
)
return 0
def add_parser(queue_subparsers, parent_parser):
QUEUE_LOGS_HELP = (
"Show output logs for running and completed experiment queue tasks."
)
queue_logs_parser = queue_subparsers.add_parser(
"logs",
parents=[parent_parser],
description=append_doc_link(QUEUE_LOGS_HELP, "queue/logs"),
help=QUEUE_LOGS_HELP,
formatter_class=argparse.RawDescriptionHelpFormatter,
)
queue_logs_parser.add_argument(
"-e",
"--encoding",
help="Text encoding for log output. Defaults to system locale encoding.",
metavar="<encoding>",
)
queue_logs_parser.add_argument(
"-f",
"--follow",
help=(
"Attach to task and follow additional live output. Only "
"applicable if the task is still running."
),
action="store_true",
)
queue_logs_parser.add_argument(
"task",
help="Task to show.",
metavar="<task>",
)
queue_logs_parser.set_defaults(func=CmdQueueLogs)
+93
View File
@@ -0,0 +1,93 @@
import argparse
import logging
from dvc.cli.command import CmdBase
from dvc.cli.utils import append_doc_link
from dvc.exceptions import InvalidArgumentError
from dvc.ui import ui
logger = logging.getLogger(__name__)
class CmdQueueRemove(CmdBase):
"""Remove exp in queue."""
def check_arguments(self):
clear_flag = any(
[
self.args.all,
self.args.queued,
self.args.failed,
self.args.success,
]
)
if not (clear_flag ^ bool(self.args.task)):
raise InvalidArgumentError(
"Either provide an `tasks` argument, or use the "
"`--all`, `--queued`, `--failed`, `--success` flag."
)
def run(self):
self.check_arguments()
if self.args.all:
self.args.queued = True
self.args.failed = True
self.args.success = True
if self.args.queued or self.args.failed or self.args.success:
removed_list = self.repo.experiments.celery_queue.clear(
success=self.args.success,
queued=self.args.queued,
failed=self.args.failed,
)
else:
removed_list = self.repo.experiments.celery_queue.remove(
revs=self.args.task,
)
if removed_list:
removed = ", ".join(removed_list)
ui.write(f"Removed tasks in queue: {removed}")
else:
ui.write(f"No tasks found named {self.args.task}")
return 0
def add_parser(queue_subparsers, parent_parser):
QUEUE_REMOVE_HELP = "Remove queued and completed tasks from the queue."
queue_remove_parser = queue_subparsers.add_parser(
"remove",
parents=[parent_parser],
description=append_doc_link(QUEUE_REMOVE_HELP, "queue/remove"),
help=QUEUE_REMOVE_HELP,
formatter_class=argparse.RawDescriptionHelpFormatter,
)
queue_remove_parser.add_argument(
"--all",
action="store_true",
help="Remove all queued and completed tasks from the queue.",
)
queue_remove_parser.add_argument(
"--queued",
action="store_true",
help="Remove all queued tasks from the queue.",
)
queue_remove_parser.add_argument(
"--success",
action="store_true",
help="Remove all successful tasks from the queue.",
)
queue_remove_parser.add_argument(
"--failed",
action="store_true",
help="Remove all failed tasks from the queue.",
)
queue_remove_parser.add_argument(
"task",
nargs="*",
help="Tasks to remove.",
metavar="<task>",
)
queue_remove_parser.set_defaults(func=CmdQueueRemove)
+40
View File
@@ -0,0 +1,40 @@
import argparse
import logging
from dvc.cli.command import CmdBase
from dvc.cli.utils import append_doc_link
from dvc.ui import ui
logger = logging.getLogger(__name__)
class CmdQueueStart(CmdBase):
"""Start exp queue workers."""
def run(self):
started = self.repo.experiments.celery_queue.start_workers(self.args.jobs)
suffix = "s" if started > 1 else ""
ui.write(f"Started '{started}' new experiments task queue worker{suffix}.")
return 0
def add_parser(queue_subparsers, parent_parser):
QUEUE_START_HELP = "Start the experiments task queue worker."
queue_start_parser = queue_subparsers.add_parser(
"start",
parents=[parent_parser],
description=append_doc_link(QUEUE_START_HELP, "queue/start"),
help=QUEUE_START_HELP,
formatter_class=argparse.RawDescriptionHelpFormatter,
)
queue_start_parser.add_argument(
"-j",
"--jobs",
type=int,
default=1,
help="Maximum number of concurrent queue workers to start. Defaults to 1.",
metavar="<number>",
)
queue_start_parser.set_defaults(func=CmdQueueStart)
+59
View File
@@ -0,0 +1,59 @@
import argparse
import logging
from typing import Dict, List, Optional
from dvc.cli.command import CmdBase
from dvc.cli.utils import append_doc_link
from dvc.commands.experiments.show import format_time
from dvc.compare import TabularData
from dvc.ui import ui
logger = logging.getLogger(__name__)
class CmdQueueStatus(CmdBase):
"""Show queue task and worker status."""
def run(self) -> int:
result: List[
Dict[str, Optional[str]]
] = self.repo.experiments.celery_queue.status()
if result:
all_headers = ["Task", "Name", "Created", "Status"]
td = TabularData(all_headers)
for exp in result:
created = format_time(exp.get("timestamp"))
assert exp["rev"]
assert exp["status"]
td.append(
[
exp["rev"][:7],
exp.get("name") or "",
created,
exp["status"],
]
)
td.render()
else:
ui.write("No experiment tasks in the queue.")
ui.write()
worker_status = self.repo.experiments.celery_queue.worker_status()
active_count = len([name for name, task in worker_status.items() if task])
idle_count = len(worker_status) - active_count
ui.write(f"Worker status: {active_count} active, {idle_count} idle")
return 0
def add_parser(queue_subparsers, parent_parser):
QUEUE_STATUS_HELP = "Show the status of experiments queue tasks and workers."
queue_status_parser = queue_subparsers.add_parser(
"status",
parents=[parent_parser],
description=append_doc_link(QUEUE_STATUS_HELP, "queue/status"),
help=QUEUE_STATUS_HELP,
formatter_class=argparse.RawDescriptionHelpFormatter,
)
queue_status_parser.set_defaults(func=CmdQueueStatus)
+42
View File
@@ -0,0 +1,42 @@
import argparse
import logging
from dvc.cli.command import CmdBase
from dvc.cli.utils import append_doc_link
from dvc.ui import ui
logger = logging.getLogger(__name__)
class CmdQueueStop(CmdBase):
"""Stop exp queue workers."""
def run(self):
self.repo.experiments.celery_queue.shutdown(kill=self.args.kill)
if self.args.kill:
ui.write(
"All running tasks in the queue have been killed."
"Queue workers are stopping."
)
else:
ui.write("Queue workers will stop after running tasks finish.")
return 0
def add_parser(queue_subparsers, parent_parser):
QUEUE_STOP_HELP = "Stop all experiments task queue workers."
queue_stop_parser = queue_subparsers.add_parser(
"stop",
parents=[parent_parser],
description=append_doc_link(QUEUE_STOP_HELP, "queue/stop"),
help=QUEUE_STOP_HELP,
formatter_class=argparse.RawDescriptionHelpFormatter,
)
queue_stop_parser.add_argument(
"--kill",
action="store_true",
help="Kill all running tasks before stopping the queue workers.",
)
queue_stop_parser.set_defaults(func=CmdQueueStop)
+5 -13
View File
@@ -95,9 +95,7 @@ class CmdRemoteDefault(CmdRemote):
if self.args.unset:
conf["core"].pop("remote", None)
else:
merged_conf = self.config.load_config_to_level(
self.args.level
)
merged_conf = self.config.load_config_to_level(self.args.level)
if (
self.args.name in conf["remote"]
or self.args.name in merged_conf["remote"]
@@ -164,7 +162,7 @@ def add_parser(subparsers, parent_parser):
remote_subparsers = remote_parser.add_subparsers(
dest="cmd",
help="Use `dvc remote CMD --help` for " "command-specific help.",
help="Use `dvc remote CMD --help` for command-specific help.",
)
fix_subparsers(remote_subparsers)
@@ -208,9 +206,7 @@ def add_parser(subparsers, parent_parser):
help=REMOTE_DEFAULT_HELP,
formatter_class=argparse.RawDescriptionHelpFormatter,
)
remote_default_parser.add_argument(
"name", nargs="?", help="Name of the remote"
)
remote_default_parser.add_argument("name", nargs="?", help="Name of the remote")
remote_default_parser.add_argument(
"-u",
"--unset",
@@ -229,9 +225,7 @@ def add_parser(subparsers, parent_parser):
formatter_class=argparse.RawDescriptionHelpFormatter,
)
remote_modify_parser.add_argument("name", help="Name of the remote")
remote_modify_parser.add_argument(
"option", help="Name of the option to modify."
)
remote_modify_parser.add_argument("option", help="Name of the option to modify.")
remote_modify_parser.add_argument(
"value", nargs="?", help="(optional) Value of the option."
)
@@ -262,9 +256,7 @@ def add_parser(subparsers, parent_parser):
help=REMOTE_REMOVE_HELP,
formatter_class=argparse.RawDescriptionHelpFormatter,
)
remote_remove_parser.add_argument(
"name", help="Name of the remote to remove."
)
remote_remove_parser.add_argument("name", help="Name of the remote to remove.")
remote_remove_parser.set_defaults(func=CmdRemoteRemove)
REMOTE_RENAME_HELP = "Rename a DVC remote"
remote_rename_parser = remote_subparsers.add_parser(
+1 -2
View File
@@ -22,8 +22,7 @@ class CmdRemove(CmdBase):
def add_parser(subparsers, parent_parser):
REMOVE_HELP = (
"Remove stages from dvc.yaml and/or"
" stop tracking files or directories."
"Remove stages from dvc.yaml and/or stop tracking files or directories."
)
remove_parser = subparsers.add_parser(
"remove",
+46 -44
View File
@@ -10,15 +10,11 @@ class CmdRepro(CmdBase):
def run(self):
from dvc.ui import ui
stages = self.repo.reproduce(
**self._common_kwargs, **self._repro_kwargs
)
stages = self.repo.reproduce(**self._common_kwargs, **self._repro_kwargs)
if len(stages) == 0:
ui.write(CmdDataStatus.UP_TO_DATE_MSG)
else:
ui.write(
"Use `dvc push` to send your updates to " "remote storage."
)
ui.write("Use `dvc push` to send your updates to remote storage.")
if self.args.metrics:
from dvc.compare import show_metrics
@@ -57,7 +53,14 @@ def add_arguments(repro_parser):
repro_parser.add_argument(
"targets",
nargs="*",
help="Stages to reproduce. 'dvc.yaml' by default.",
help="""\
Stages to reproduce. 'dvc.yaml' by default.
The targets can be path to a dvc.yaml file or `.dvc` file,
or a stage name from dvc.yaml file from
current working directory. To run a stage from dvc.yaml
from other directories, the target must be a path followed by colon `:`
and then the stage name name.
""",
).complete = completion.DVCFILES_AND_STAGE
repro_parser.add_argument(
"-f",
@@ -66,28 +69,6 @@ def add_arguments(repro_parser):
default=False,
help="Reproduce even if dependencies were not changed.",
)
repro_parser.add_argument(
"-s",
"--single-item",
action="store_true",
default=False,
help="Reproduce only single data item without recursive dependencies "
"check.",
)
repro_parser.add_argument(
"-m",
"--metrics",
action="store_true",
default=False,
help="Show metrics after reproduction.",
)
repro_parser.add_argument(
"--dry",
action="store_true",
default=False,
help="Only print the commands that would be executed without "
"actually executing.",
)
repro_parser.add_argument(
"-i",
"--interactive",
@@ -95,13 +76,19 @@ def add_arguments(repro_parser):
default=False,
help="Ask for confirmation before reproducing each stage.",
)
repro_parser.add_argument(
"-s",
"--single-item",
action="store_true",
default=False,
help="Reproduce only single data item without recursive dependencies check.",
)
repro_parser.add_argument(
"-p",
"--pipeline",
action="store_true",
default=False,
help="Reproduce the whole pipeline that the specified targets "
"belong to.",
help="Reproduce the whole pipeline that the specified targets belong to.",
)
repro_parser.add_argument(
"-P",
@@ -118,11 +105,11 @@ def add_arguments(repro_parser):
help="Reproduce all stages in the specified directory.",
)
repro_parser.add_argument(
"--force-downstream",
"-m",
"--metrics",
action="store_true",
default=False,
help="Reproduce all descendants of a changed stage even if their "
"direct dependencies didn't change.",
help="Show metrics after reproduction.",
)
repro_parser.add_argument(
"--downstream",
@@ -130,6 +117,15 @@ def add_arguments(repro_parser):
default=False,
help="Start from the specified stages when reproducing pipelines.",
)
repro_parser.add_argument(
"--force-downstream",
action="store_true",
default=False,
help=(
"Reproduce all descendants of a changed stage even if their "
"direct dependencies didn't change."
),
)
repro_parser.add_argument(
"--pull",
action="store_true",
@@ -139,12 +135,18 @@ def add_arguments(repro_parser):
"from the run-cache."
),
)
repro_parser.add_argument(
"--dry",
action="store_true",
default=False,
help=(
"Only print the commands that would be executed without actually executing."
),
)
def add_parser(subparsers, parent_parser):
REPRO_HELP = (
"Reproduce complete or partial pipelines by executing their stages."
)
REPRO_HELP = "Reproduce complete or partial pipelines by executing their stages."
repro_parser = subparsers.add_parser(
"repro",
parents=[parent_parser],
@@ -156,13 +158,10 @@ def add_parser(subparsers, parent_parser):
add_arguments(repro_parser)
# repro only args
repro_parser.add_argument(
"--no-run-cache",
"--glob",
action="store_true",
default=False,
help=(
"Execute stage commands even if they have already been run with "
"the same command/dependencies/outputs/etc before."
),
help="Allows targets containing shell-style wildcards.",
)
repro_parser.add_argument(
"--no-commit",
@@ -171,9 +170,12 @@ def add_parser(subparsers, parent_parser):
help="Don't put files/directories into cache.",
)
repro_parser.add_argument(
"--glob",
"--no-run-cache",
action="store_true",
default=False,
help="Allows targets containing shell-style wildcards.",
help=(
"Execute stage commands even if they have already been run with "
"the same command/dependencies/outputs/etc before."
),
)
repro_parser.set_defaults(func=CmdRepro)
+14 -18
View File
@@ -39,7 +39,7 @@ class CmdRun(CmdBase):
{
"cmd": parse_cmd(self.args.command),
"fname": kwargs.pop("file"),
"no_exec": (self.args.no_exec or bool(self.args.checkpoints)),
"no_exec": self.args.no_exec or bool(self.args.checkpoints),
"run_cache": not kwargs.pop("no_run_cache"),
}
)
@@ -55,9 +55,7 @@ class CmdRun(CmdBase):
def add_parser(subparsers, parent_parser):
from dvc.commands.stage import _add_common_args
RUN_HELP = (
"Generate a dvc.yaml file from a command and execute the command."
)
RUN_HELP = "Generate a dvc.yaml file from a command and execute the command."
run_parser = subparsers.add_parser(
"run",
parents=[parent_parser],
@@ -66,15 +64,26 @@ def add_parser(subparsers, parent_parser):
formatter_class=argparse.RawDescriptionHelpFormatter,
)
run_parser.add_argument("-n", "--name", help="Stage name.")
run_parser.add_argument("--file", metavar="<filename>", help=argparse.SUPPRESS)
run_parser.add_argument(
"--file", metavar="<filename>", help=argparse.SUPPRESS
"--single-stage",
action="store_true",
default=False,
help=argparse.SUPPRESS,
)
_add_common_args(run_parser)
run_parser.add_argument(
"--no-exec",
action="store_true",
default=False,
help="Only create dvc.yaml without actually running it.",
)
run_parser.add_argument(
"--no-commit",
action="store_true",
default=False,
help="Don't put files/directories into cache.",
)
run_parser.add_argument(
"--no-run-cache",
action="store_true",
@@ -84,17 +93,4 @@ def add_parser(subparsers, parent_parser):
"with the same command/dependencies/outputs/etc before."
),
)
run_parser.add_argument(
"--no-commit",
action="store_true",
default=False,
help="Don't put files/directories into cache.",
)
run_parser.add_argument(
"--single-stage",
action="store_true",
default=False,
help=argparse.SUPPRESS,
)
_add_common_args(run_parser)
run_parser.set_defaults(func=CmdRun)
+53 -75
View File
@@ -44,9 +44,7 @@ def generate_description(stage: "Stage") -> str:
return "; ".join(desc)
def prepare_description(
stage: "Stage", max_length: int = MAX_TEXT_LENGTH
) -> str:
def prepare_description(stage: "Stage", max_length: int = MAX_TEXT_LENGTH) -> str:
desc = stage.short_description() or generate_description(stage)
return truncate_text(desc, max_length)
@@ -57,9 +55,9 @@ def prepare_stages_data(
max_length: int = MAX_TEXT_LENGTH,
) -> Dict[str, str]:
return {
stage.addressing: prepare_description(stage, max_length=max_length)
if description
else ""
stage.addressing: (
prepare_description(stage, max_length=max_length) if description else ""
)
for stage in stages
}
@@ -67,7 +65,7 @@ def prepare_stages_data(
class CmdStageList(CmdBase):
def _get_stages(self) -> Iterable["Stage"]:
if self.args.all:
stages: List["Stage"] = self.repo.index.stages # type: ignore
stages: List["Stage"] = self.repo.index.stages
logger.trace( # type: ignore[attr-defined]
"%d no. of stages found", len(stages)
)
@@ -75,9 +73,7 @@ class CmdStageList(CmdBase):
# removing duplicates while maintaining order
collected = chain.from_iterable(
self.repo.stage.collect(
target=target, recursive=self.args.recursive, accept_group=True
)
self.repo.stage.collect(target=target, recursive=self.args.recursive)
for target in self.args.targets
)
return dict.fromkeys(collected).keys()
@@ -95,7 +91,7 @@ class CmdStageList(CmdBase):
stages = self._get_stages()
data = prepare_stages_data(stages, description=not self.args.name_only)
ui.table(data.items())
ui.table(list(data.items()))
return 0
@@ -137,6 +133,13 @@ class CmdStageAdd(CmdBase):
def _add_common_args(parser):
parser.add_argument(
"-f",
"--force",
action="store_true",
default=False,
help="Overwrite existing stage",
)
parser.add_argument(
"-d",
"--deps",
@@ -145,6 +148,14 @@ def _add_common_args(parser):
help="Declare dependencies for reproducible cmd.",
metavar="<path>",
).complete = completion.FILE
parser.add_argument(
"-p",
"--params",
action="append",
default=[],
help="Declare parameter to use as additional dependency.",
metavar="[<filename>:]<params_list>",
).complete = completion.FILE
parser.add_argument(
"-o",
"--outs",
@@ -158,18 +169,43 @@ def _add_common_args(parser):
"--outs-no-cache",
action="append",
default=[],
help="Declare output file or directory "
"(do not put into DVC cache).",
help="Declare output file or directory (do not put into DVC cache).",
metavar="<filename>",
).complete = completion.FILE
parser.add_argument(
"-p",
"--params",
"-c",
"--checkpoints",
action="append",
default=[],
help="Declare parameter to use as additional dependency.",
metavar="[<filename>:]<params_list>",
help=(
"Declare checkpoint output file or directory for 'dvc exp run'. "
"Not compatible with 'dvc repro'."
),
metavar="<filename>",
).complete = completion.FILE
parser.add_argument(
"--external",
action="store_true",
default=False,
help="Allow outputs that are outside of the DVC repository.",
)
parser.add_argument(
"--outs-persist",
action="append",
default=[],
help="Declare output file or directory that will not be removed upon repro.",
metavar="<filename>",
)
parser.add_argument(
"--outs-persist-no-cache",
action="append",
default=[],
help=(
"Declare output file or directory that will not be "
"removed upon repro (do not put into DVC cache)."
),
metavar="<filename>",
)
parser.add_argument(
"-m",
"--metrics",
@@ -200,76 +236,18 @@ def _add_common_args(parser):
help="Declare output plot file (do not put into DVC cache).",
metavar="<path>",
)
parser.add_argument(
"--live", help="Declare output as dvclive.", metavar="<path>"
)
parser.add_argument(
"--live-no-cache",
help="Declare output as dvclive (do not put into DVC cache).",
metavar="<path>",
)
parser.add_argument(
"--live-no-summary",
action="store_true",
default=False,
help=argparse.SUPPRESS,
)
parser.add_argument(
"--live-no-html",
action="store_true",
default=False,
help="Signal dvclive logger to not produce training report.",
)
parser.add_argument(
"-w",
"--wdir",
help="Directory within your repo to run your command in.",
metavar="<path>",
)
parser.add_argument(
"-f",
"--force",
action="store_true",
default=False,
help="Overwrite existing stage",
)
parser.add_argument(
"--outs-persist",
action="append",
default=[],
help="Declare output file or directory that will not be "
"removed upon repro.",
metavar="<filename>",
)
parser.add_argument(
"--outs-persist-no-cache",
action="append",
default=[],
help="Declare output file or directory that will not be "
"removed upon repro (do not put into DVC cache).",
metavar="<filename>",
)
parser.add_argument(
"-c",
"--checkpoints",
action="append",
default=[],
help="Declare checkpoint output file or directory for 'dvc exp run'. "
"Not compatible with 'dvc repro'.",
metavar="<filename>",
).complete = completion.FILE
parser.add_argument(
"--always-changed",
action="store_true",
default=False,
help="Always consider this DVC-file as changed.",
)
parser.add_argument(
"--external",
action="store_true",
default=False,
help="Allow outputs that are outside of the DVC repository.",
)
parser.add_argument(
"--desc",
type=str,
+1 -3
View File
@@ -81,9 +81,7 @@ class CmdDataStatus(CmdDataBase):
if not self.repo.index.stages:
ui.write(self.EMPTY_PROJECT_MSG)
elif self.args.cloud or self.args.remote:
remote = self.args.remote or self.repo.config["core"].get(
"remote"
)
remote = self.args.remote or self.repo.config["core"].get("remote")
ui.write(self.IN_SYNC_MSG.format(remote=remote))
else:
ui.write(self.UP_TO_DATE_MSG)
+15 -1
View File
@@ -18,6 +18,7 @@ class CmdUpdate(CmdBase):
rev=self.args.rev,
recursive=self.args.recursive,
to_remote=self.args.to_remote,
no_download=self.args.no_download,
remote=self.args.remote,
jobs=self.args.jobs,
)
@@ -28,7 +29,11 @@ class CmdUpdate(CmdBase):
def add_parser(subparsers, parent_parser):
UPDATE_HELP = "Update data artifacts imported from other DVC repositories."
UPDATE_HELP = (
"Update data artifact imported (via dvc import or dvc import-url) "
"from an external DVC repository or URL, or update data from a "
"DVC worktree remote."
)
update_parser = subparsers.add_parser(
"update",
parents=[parent_parser],
@@ -52,6 +57,15 @@ def add_parser(subparsers, parent_parser):
default=False,
help="Update all stages in the specified directory.",
)
update_parser.add_argument(
"--no-download",
action="store_true",
default=False,
help=(
"Update .dvc file git revision/hash value(s)"
" but do not download the file(s)."
),
)
update_parser.add_argument(
"--to-remote",
action="store_true",
+1 -3
View File
@@ -21,9 +21,7 @@ class CmdVersion(CmdBaseNoRepo):
def add_parser(subparsers, parent_parser):
VERSION_HELP = (
"Display the DVC version and system/environment information."
)
VERSION_HELP = "Display the DVC version and system/environment information."
version_parser = subparsers.add_parser(
"version",
parents=[parent_parser],
+33 -49
View File
@@ -58,15 +58,13 @@ class TabularData(MutableSequence[Sequence["CellT"]]):
return self._columns[name]
def items(self) -> ItemsView[str, Column]:
projection = {k: self.column(k) for k in self.keys()}
projection = {k: self.column(k) for k in self.keys()} # noqa: SIM118
return projection.items()
def keys(self) -> List[str]:
return self._keys
def _iter_col_row(
self, row: Sequence["CellT"]
) -> Iterator[Tuple["CellT", Column]]:
def _iter_col_row(self, row: Sequence["CellT"]) -> Iterator[Tuple["CellT", Column]]:
for val, col in zip_longest(row, self.columns):
if col is None:
break
@@ -103,9 +101,7 @@ class TabularData(MutableSequence[Sequence["CellT"]]):
...
@overload
def __setitem__(
self, item: slice, value: Iterable[Sequence["CellT"]]
) -> None:
def __setitem__(self, item: slice, value: Iterable[Sequence["CellT"]]) -> None:
...
def __setitem__(self, item, value) -> None:
@@ -113,8 +109,7 @@ class TabularData(MutableSequence[Sequence["CellT"]]):
if isinstance(item, slice):
n = len(self.columns)
normalized_rows = (
chain(val, repeat(self._fill_value, n - len(val)))
for val in value
chain(val, repeat(self._fill_value, n - len(val))) for val in value
)
# we need to transpose those rows into columnar format
# as we work in terms of column-based arrays
@@ -167,7 +162,7 @@ class TabularData(MutableSequence[Sequence["CellT"]]):
return buff.getvalue()
def to_parallel_coordinates(
self, output_path: "StrPath", color_by: str = None
self, output_path: "StrPath", color_by: Optional[str] = None
) -> "StrPath":
from dvc_render.html import render_html
from dvc_render.plotly import ParallelCoordinatesRenderer
@@ -195,7 +190,8 @@ class TabularData(MutableSequence[Sequence["CellT"]]):
self.add_column(key)
row: List["CellT"] = [
with_value(d.get(key), self._fill_value) for key in self.keys()
with_value(d.get(key), self._fill_value)
for key in self.keys() # noqa: SIM118
]
self.append(row)
@@ -208,14 +204,12 @@ class TabularData(MutableSequence[Sequence["CellT"]]):
ui.table(self, headers=self.keys(), **kwargs)
def as_dict(
self, cols: Iterable[str] = None
self, cols: Optional[Iterable[str]] = None
) -> Iterable[Dict[str, "CellT"]]:
keys = self.keys() if cols is None else set(cols)
return [
{k: self._columns[k][i] for k in keys} for i in range(len(self))
]
return [{k: self._columns[k][i] for k in keys} for i in range(len(self))]
def dropna(
def dropna( # noqa: C901
self,
axis: str = "rows",
how="any",
@@ -223,13 +217,10 @@ class TabularData(MutableSequence[Sequence["CellT"]]):
):
if axis not in ["rows", "cols"]:
raise ValueError(
f"Invalid 'axis' value {axis}."
"Choose one of ['rows', 'cols']"
f"Invalid 'axis' value {axis}.Choose one of ['rows', 'cols']"
)
if how not in ["any", "all"]:
raise ValueError(
f"Invalid 'how' value {how}." "Choose one of ['any', 'all']"
)
raise ValueError(f"Invalid 'how' value {how}. Choose one of ['any', 'all']")
match_line: Set = set()
match_any = True
@@ -244,8 +235,7 @@ class TabularData(MutableSequence[Sequence["CellT"]]):
if axis == "rows":
match_line.add(n_row)
break
else:
match_line.add(self.keys()[n_col])
match_line.add(self.keys()[n_col])
to_drop = match_line
if how == "all":
@@ -256,18 +246,14 @@ class TabularData(MutableSequence[Sequence["CellT"]]):
to_drop -= match_line
if axis == "rows":
for name in self.keys():
for name in self.keys(): # noqa: SIM118
self._columns[name] = Column(
[
x
for n, x in enumerate(self._columns[name])
if n not in to_drop
]
[x for n, x in enumerate(self._columns[name]) if n not in to_drop]
)
else:
self.drop(*to_drop)
def drop_duplicates(
def drop_duplicates( # noqa: C901
self,
axis: str = "rows",
subset: Optional[Iterable[str]] = None,
@@ -275,8 +261,7 @@ class TabularData(MutableSequence[Sequence["CellT"]]):
):
if axis not in ["rows", "cols"]:
raise ValueError(
f"Invalid 'axis' value {axis}."
"Choose one of ['rows', 'cols']"
f"Invalid 'axis' value {axis}.Choose one of ['rows', 'cols']"
)
if axis == "cols":
@@ -309,7 +294,7 @@ class TabularData(MutableSequence[Sequence["CellT"]]):
else:
unique_rows.append(tuple_row)
for name in self.keys():
for name in self.keys(): # noqa: SIM118
self._columns[name] = Column(
[
x
@@ -324,12 +309,13 @@ def _normalize_float(val: float, precision: int):
def _format_field(
val: Any, precision: int = None, round_digits: bool = False
val: Any, precision: Optional[int] = None, round_digits: bool = False
) -> str:
def _format(_val):
if isinstance(_val, float) and precision:
func = round if round_digits else _normalize_float
return func(_val, precision)
if round_digits:
return round(_val, precision)
return _normalize_float(_val, precision)
if isinstance(_val, abc.Mapping):
return {k: _format(v) for k, v in _val.items()}
if isinstance(_val, list):
@@ -345,11 +331,11 @@ def diff_table(
old: bool = True,
no_path: bool = False,
show_changes: bool = True,
precision: int = None,
precision: Optional[int] = None,
round_digits: bool = False,
on_empty_diff: str = None,
a_rev: str = None,
b_rev: str = None,
on_empty_diff: Optional[str] = None,
a_rev: Optional[str] = None,
b_rev: Optional[str] = None,
) -> TabularData:
a_rev = a_rev or "HEAD"
b_rev = b_rev or "workspace"
@@ -361,9 +347,7 @@ def diff_table(
for item, change in sorted(diff_in_file.items()):
old_value = with_value(change.get("old"), fill_value)
new_value = with_value(change.get("new"), fill_value)
diff_value = with_value(
change.get("diff", on_empty_diff), fill_value
)
diff_value = with_value(change.get("diff", on_empty_diff), fill_value)
td.append(
[
fname,
@@ -393,12 +377,12 @@ def show_diff(
old: bool = True,
no_path: bool = False,
show_changes: bool = True,
precision: int = None,
precision: Optional[int] = None,
round_digits: bool = False,
on_empty_diff: str = None,
on_empty_diff: Optional[str] = None,
markdown: bool = False,
a_rev: str = None,
b_rev: str = None,
a_rev: Optional[str] = None,
b_rev: Optional[str] = None,
) -> None:
td = diff_table(
diff,
@@ -420,7 +404,7 @@ def metrics_table(
all_branches: bool = False,
all_tags: bool = False,
all_commits: bool = False,
precision: int = None,
precision: Optional[int] = None,
round_digits: bool = False,
):
from dvc.utils.diff import format_dict
@@ -460,7 +444,7 @@ def show_metrics(
all_branches: bool = False,
all_tags: bool = False,
all_commits: bool = False,
precision: int = None,
precision: Optional[int] = None,
round_digits: bool = False,
) -> None:
td = metrics_table(
+35 -21
View File
@@ -4,11 +4,18 @@ import os
import re
from contextlib import contextmanager
from functools import partial
from typing import TYPE_CHECKING, Dict, Optional
from funcy import cached_property, compact, memoize, re_find
from funcy import compact, memoize, re_find
from dvc.exceptions import DvcException, NotDvcRepoError
from .utils.objects import cached_property
if TYPE_CHECKING:
from dvc.fs import FileSystem
from dvc.types import DictStrAny, StrPath
logger = logging.getLogger(__name__)
@@ -84,11 +91,17 @@ class Config(dict):
CONFIG_LOCAL = "config.local"
def __init__(
self, dvc_dir=None, validate=True, fs=None, config=None
self,
dvc_dir: Optional["StrPath"] = None,
validate: bool = True,
fs: Optional["FileSystem"] = None,
config: Optional["DictStrAny"] = None,
): # pylint: disable=super-init-not-called
from dvc.fs.local import LocalFileSystem
from dvc.fs import LocalFileSystem
self.dvc_dir = dvc_dir
self.wfs = LocalFileSystem()
self.fs = fs or self.wfs
if not dvc_dir:
try:
@@ -98,10 +111,7 @@ class Config(dict):
except NotDvcRepoError:
self.dvc_dir = None
else:
self.dvc_dir = os.path.abspath(os.path.realpath(dvc_dir))
self.wfs = LocalFileSystem(url=self.dvc_dir)
self.fs = fs or self.wfs
self.dvc_dir = self.fs.path.abspath(self.fs.path.realpath(dvc_dir))
self.load(validate=validate, config=config)
@@ -117,15 +127,15 @@ class Config(dict):
return site_config_dir(cls.APPNAME, cls.APPAUTHOR)
@cached_property
def files(self):
def files(self) -> Dict[str, str]:
files = {
level: os.path.join(self.get_dir(level), self.CONFIG)
for level in ("system", "global")
}
if self.dvc_dir is not None:
files["repo"] = os.path.join(self.dvc_dir, self.CONFIG)
files["local"] = os.path.join(self.dvc_dir, self.CONFIG_LOCAL)
files["repo"] = self.fs.path.join(self.dvc_dir, self.CONFIG)
files["local"] = self.fs.path.join(self.dvc_dir, self.CONFIG_LOCAL)
return files
@@ -140,10 +150,10 @@ class Config(dict):
dvc.config.Config: config object.
"""
config_file = os.path.join(dvc_dir, Config.CONFIG)
open(config_file, "w+", encoding="utf-8").close()
return Config(dvc_dir)
with open(config_file, "w+", encoding="utf-8"):
return Config(dvc_dir)
def load(self, validate=True, config=None):
def load(self, validate: bool = True, config: Optional["DictStrAny"] = None):
"""Loads config from all the config files.
Raises:
@@ -170,14 +180,19 @@ class Config(dict):
return self.fs if level == "repo" else self.wfs
def _load_config(self, level):
from configobj import ConfigObj
from configobj import ConfigObj, ConfigObjError
filename = self.files[level]
fs = self._get_fs(level)
if fs.exists(filename):
with fs.open(filename) as fobj:
conf_obj = ConfigObj(fobj)
try:
conf_obj = ConfigObj(fobj)
except UnicodeDecodeError as exc:
raise ConfigError(str(exc)) from exc
except ConfigObjError as exc:
raise ConfigError(str(exc)) from exc
else:
conf_obj = ConfigObj()
return _parse_named(_lower_keys(conf_obj.dict()))
@@ -188,7 +203,7 @@ class Config(dict):
filename = self.files[level]
fs = self._get_fs(level)
logger.debug(f"Writing '{filename}'.")
logger.debug("Writing '%s'.", filename)
fs.makedirs(os.path.dirname(filename))
@@ -228,7 +243,7 @@ class Config(dict):
@staticmethod
def _to_relpath(conf_dir, path):
from dvc.fs.local import localfs
from dvc.fs import localfs
from dvc.utils import relpath
from .config_schema import RelPath
@@ -276,7 +291,7 @@ class Config(dict):
return Schema(dirs_schema, extra=ALLOW_EXTRA)(conf)
def load_config_to_level(self, level=None):
merged_conf = {}
merged_conf: Dict = {}
for merge_level in self.LEVELS:
if merge_level == level:
break
@@ -322,7 +337,7 @@ class Config(dict):
def _parse_named(conf):
result = {"remote": {}, "machine": {}}
result: Dict[str, Dict] = {"remote": {}, "machine": {}}
for section, val in conf.items():
match = re_find(r'^\s*(remote|machine)\s*"(.*)"\s*$', section)
@@ -359,6 +374,5 @@ def merge(into, update):
def _lower_keys(data):
return {
k.lower(): _lower_keys(v) if isinstance(v, dict) else v
for k, v in data.items()
k.lower(): _lower_keys(v) if isinstance(v, dict) else v for k, v in data.items()
}
+25 -16
View File
@@ -2,16 +2,7 @@ import os
from urllib.parse import urlparse
from funcy import walk_values
from voluptuous import (
All,
Any,
Coerce,
Invalid,
Lower,
Optional,
Range,
Schema,
)
from voluptuous import All, Any, Coerce, Invalid, Lower, Optional, Range, Schema
Bool = All(
Lower,
@@ -34,9 +25,7 @@ def supported_cache_type(types):
unsupported = set(types) - {"reflink", "hardlink", "symlink", "copy"}
if unsupported:
raise Invalid(
"Unsupported cache type(s): {}".format(", ".join(unsupported))
)
raise Invalid("Unsupported cache type(s): {}".format(", ".join(unsupported)))
return types
@@ -78,7 +67,9 @@ REMOTE_COMMON = {
"url": str,
"checksum_jobs": All(Coerce(int), Range(1)),
"jobs": All(Coerce(int), Range(1)),
Optional("worktree"): Bool,
Optional("no_traverse"): Bool, # obsoleted
Optional("version_aware"): Bool,
}
LOCAL_COMMON = {
"type": supported_cache_type,
@@ -95,6 +86,8 @@ HTTP_COMMON = {
"ask_password": Bool,
"ssl_verify": Any(Bool, str),
"method": str,
"connect_timeout": All(Coerce(float), Range(0, min_included=True)),
"read_timeout": All(Coerce(float), Range(0, min_included=True)),
Optional("verify", default=False): Bool,
}
WEBDAV_COMMON = {
@@ -102,6 +95,7 @@ WEBDAV_COMMON = {
"password": str,
"ask_password": Bool,
"token": str,
"custom_auth_header": str,
"cert_path": str,
"key_path": str,
"timeout": Coerce(int),
@@ -152,6 +146,8 @@ SCHEMA = {
"ssl_verify": Any(Bool, str),
"sse": str,
"sse_kms_key_id": str,
"sse_customer_algorithm": str,
"sse_customer_key": str,
"acl": str,
"grant_read": str,
"grant_read_acp": str,
@@ -166,6 +162,7 @@ SCHEMA = {
"gs": {
"projectname": str,
"credentialpath": str,
"endpointurl": str,
Optional("verify", default=False): Bool,
**REMOTE_COMMON,
},
@@ -175,6 +172,8 @@ SCHEMA = {
"user": str,
"password": str,
"ask_password": Bool,
"passphrase": str,
"ask_passphrase": Bool,
"keyfile": str,
"timeout": Coerce(int),
"gss_auth": Bool,
@@ -217,6 +216,7 @@ SCHEMA = {
**REMOTE_COMMON,
},
"gdrive": {
"profile": str,
"gdrive_use_service_account": Bool,
"gdrive_client_id": str,
"gdrive_client_secret": str,
@@ -224,6 +224,7 @@ SCHEMA = {
"gdrive_service_account_user_email": str,
"gdrive_service_account_json_file_path": str,
Optional("gdrive_trash_only", default=False): Bool,
Optional("gdrive_acknowledge_abuse", default=False): Bool,
Optional("verify", default=True): Bool,
**REMOTE_COMMON,
},
@@ -246,9 +247,7 @@ SCHEMA = {
"machine": {
str: {
"cloud": All(Lower, Choices("aws", "azure")),
"region": All(
Lower, Choices("us-west", "us-east", "eu-west", "eu-north")
),
"region": All(Lower, Choices("us-west", "us-east", "eu-west", "eu-north")),
"image": str,
"spot": Bool,
"spot_price": Coerce(float),
@@ -269,6 +268,7 @@ SCHEMA = {
"plots": {
"html_template": str,
Optional("auto_open", default=False): Bool,
"out_dir": str,
},
"exp": {
"code": str,
@@ -279,4 +279,13 @@ SCHEMA = {
"plots": str,
"live": str,
},
"parsing": {
"bool": All(Lower, Choices("store_true", "boolean_optional")),
"list": All(Lower, Choices("nargs", "append")),
},
"hydra": {
Optional("enabled", default=False): Bool,
"config_dir": str,
"config_name": str,
},
}

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