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...
567 Commits
Author SHA1 Message Date
Ruslan Kuprieiev 3cbf319e0d loader: don't forget to set meta.isdir
Leftover from #8273

Fixes #8300
2022-09-15 22:53:48 +03:00
Ruslan Kuprieiev 477a6e177f index: use tree obj if using inline files
Leftover from #8273
2022-09-15 21:25:28 +03:00
skshetry f854fc6365 try to split testsuites into two (#8297)
try to split tests
2022-09-15 22:11:02 +05:45
skshetry 1b90683e02 dvcfs: add fsspec-compliance tests (#8296)
dvcfs: add tests
2022-09-15 18:42:50 +05:45
skshetry d762372d55 schema: add strict schema validation for top-level plots (#8289)
schema: add strict schema validation for plots
2022-09-15 16:30:10 +05:45
Peter Rowlands f3d304580a schema: update lockfile schema for versioning and dir files 2022-09-15 13:13:31 +03:00
Peter Rowlands 0e0d46e232 output: lazy load tree from files list in get_obj 2022-09-15 13:13:31 +03:00
Peter Rowlands 95ae018ed8 push/fetch: support dirs in worktree remotes 2022-09-15 13:13:31 +03:00
Peter Rowlands c29e721823 output: support loading/dumping dir trees from metadata 2022-09-15 13:13:31 +03:00
Peter Rowlands a9c7032d50 dvc-data: bump to 0.8.0 2022-09-15 13:13:31 +03:00
Peter Rowlands ecb767d622 index: add workspace/key generation helper 2022-09-15 13:13:31 +03:00
Saugat Pachhai (सौगात) fa45a9bbba dvcfs: default open to binary mode 2022-09-15 13:11:52 +03:00
daniele f50ae589ba deps: remove unused mock dep (#8290) 2022-09-15 07:34:21 +05:45
Daniele Trifirò 611c114f01 import-url: pass fs_config down from imp_url to get_cloud_fs 2022-09-14 22:26:19 +03:00
skshetry fdc18d5483 expose dvcfs in dvc.api and add to fsspec's registry (#8287)
* expose dvcfs in dvc.api and add to fsspec's registry

* readd __all__ to avoid exposing modules
2022-09-14 20:02:56 +05:45
David de la Iglesia Castro 3b532b7d59 exp run: Support hydra basic sweeper.
Requires `--queue` to be used alongside `--set-param`.

Doesn't strictly require `hydra.config.enabled`.

Add `get_hydra_sweeps` to `dvc/utils/hydra.py`.  Uses hydra `BasicSweeper` to generate the different sweeps.

`glob` syntax for sweeps is not supported in this P.R.

Closes #8083

---

Using setup from https://hydra.cc/docs/tutorials/basic/your_first_app/composition/ :

```console
$ dvc exp run -S "db=mysql,postgresql" -S "schema=warehouse,school" --queue
Queueing with '{'params.yaml': ['db=mysql', 'schema=warehouse']}'.
Queued experiment '5ab98b8' for future execution.
Queueing with '{'params.yaml': ['db=mysql', 'schema=school']}'.
Queued experiment '57c2fb6' for future execution.
Queueing with '{'params.yaml': ['db=postgresql', 'schema=warehouse']}'.
Queued experiment 'b9d6391' for future execution.
Queueing with '{'params.yaml': ['db=postgresql', 'schema=school']}'.
Queued experiment '145cd55' for future execution.
```
2022-09-13 13:43:30 +02:00
skshetry e78c4455de dvcfs: remove unused config code for opening a repo, change signature (#8277)
dvcfs: remove unused code for opening a repo
2022-09-13 09:26:33 +05:45
skshetry 8e5f4a8f35 data ls: new command to show metadata with outputs (#8252)
data ls: add new command to show metadata for the outputs
2022-09-09 17:36:24 +05:45
Saugat Pachhai (सौगात) cb3159e586 dvcfs: remove config 2022-09-09 13:16:27 +03:00
skshetry 7b301b09a1 data status: fix type hints (#8275) 2022-09-09 13:38:41 +05:45
skshetry 55b16166c8 add/import/import-url: update help message for labels/type/desc (#8271) 2022-09-08 23:09:10 +05:45
Ronan Lamy c70d0bd14d fs: cleanup and rename _get_fs_pair_2() to _get_subrepo_info() 2022-09-08 17:39:32 +03:00
Ronan Lamy b99a0cd6ca fs: _get_dvc_path() cannot be called with dvc_fs=None 2022-09-08 17:39:32 +03:00
Ronan Lamy d4170b2ec0 fs: refactor _get_fs_pair_2() 2022-09-08 17:39:32 +03:00
Ronan Lamy a3181bb509 fs: remove _get_fs_pair() 2022-09-08 17:39:32 +03:00
Ronan Lamy 4d6b90502b fs: improve performance of _DvcFileSystem._update()
Avoid back and forth conversions between key tuples and path strings.
2022-09-08 17:39:32 +03:00
Ronan Lamy 947427f4d9 fs: remove dead code 2022-09-08 17:39:32 +03:00
Ronan Lamy 0482a1a88b fs: simplify data flow
This uses the fact that repo.fs is always self.repo.fs and that
self.repo.fs always exists.
2022-09-08 17:39:32 +03:00
Ronan Lamy b470459987 fs: simplify return values of _get_fs_pair_2() 2022-09-08 17:39:32 +03:00
Ronan Lamy 81a010674e fs: avoid costly redundant dvcignore check when calling ._info() from .ls() 2022-09-08 17:39:32 +03:00
Ronan Lamy d946a1328e fs: Extract ._info() from .info()
This avoids unnecessarily recomputing dvc_parts when calling .info()
from .ls()
2022-09-08 17:39:32 +03:00
Ronan Lamy ad7d39da20 fs: chop up ._get_fs_pair() 2022-09-08 17:39:32 +03:00
Saugat Pachhai (सौगात) 8432de5980 metadata: add support for dvc.yaml file 2022-09-08 15:10:33 +03:00
Saugat Pachhai (सौगात) c73764156e metadata: support custom metadata in .dvc files
This adds support for custom metadata in outputs under `meta` key.
Also adds `--meta` flag to `add`/`import`/`import-url` that supports
`key=value` values.
2022-09-08 14:10:35 +03:00
skshetry df60df5242 add metadata fields: label, type to data (#8232)
gto like metadata fields: labels and type
2022-09-08 16:33:47 +05:45
dependabot[bot] 504485ed6e build(deps-dev): Bump pylint from 2.15.0 to 2.15.2 (#8268)
Bumps [pylint](https://github.com/PyCQA/pylint) from 2.15.0 to 2.15.2.
- [Release notes](https://github.com/PyCQA/pylint/releases)
- [Commits](https://github.com/PyCQA/pylint/compare/v2.15.0...v2.15.2)

---
updated-dependencies:
- dependency-name: pylint
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2022-09-08 10:57:12 +05:45
dependabot[bot] 1e989bde2c build(deps): Bump scmrepo from 0.1.0 to 0.1.1 (#8269)
Bumps [scmrepo](https://github.com/iterative/scmrepo) from 0.1.0 to 0.1.1.
- [Release notes](https://github.com/iterative/scmrepo/releases)
- [Commits](https://github.com/iterative/scmrepo/compare/0.1.0...0.1.1)

---
updated-dependencies:
- dependency-name: scmrepo
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2022-09-08 10:56:53 +05:45
Ruslan Kuprieiev 7e2248bbe5 deps: bump dvc-data to 0.7.1 2022-09-07 23:07:35 +03:00
Daniele Trifirò a2d80b2403 silence flake8 errors (abstract class with no abstract method) 2022-09-07 21:51:33 +03:00
Daniele Trifirò 76e7c76ae5 data status: fix for scmrepo 0.1.0 2022-09-07 21:48:53 +03:00
Ruslan Kuprieiev 6cada6dc12 dvc: cloud versioning POC 2022-09-07 21:43:34 +03:00
Ruslan Kuprieiev 89d4461908 deps: temporarily limit dulwich to <0.20.46
Looks like the new release broke some data status logic.
2022-09-07 02:56:14 +03:00
Ruslan Kuprieiev a124d7e866 deps: bump dvc-data to 0.6.3 2022-09-07 02:23:29 +03:00
Ruslan Kuprieiev 628be2ae49 deps: bump dvc-data to 0.6.1 2022-09-06 20:30:20 +03:00
dependabot[bot] 7a71e06946 build(deps): Bump dvc-render from 0.0.9 to 0.0.10
Bumps [dvc-render](https://github.com/iterative/dvc-render) from 0.0.9 to 0.0.10.
- [Release notes](https://github.com/iterative/dvc-render/releases)
- [Commits](https://github.com/iterative/dvc-render/compare/0.0.9...0.0.10)

---
updated-dependencies:
- dependency-name: dvc-render
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-09-06 17:12:36 +02:00
dependabot[bot] 91e54d8c27 build(deps): Bump dvc-data from 0.4.0 to 0.5.3 2022-09-06 17:17:21 +03:00
skshetry 071b2b8f81 add support for foreach target (#8210)
add general support for foreach target
2022-09-06 06:39:37 +05:45
skshetry 0b2b59a601 dvc.yaml: preserve outputs' desc on rewrites/updates to the stage (#8247)
preserve outputs' desc on rewrites/updates to the stage

We were not loading `desc` of the output, due to which we were not preserving the desc field over rewrites. Note that the rewrite only happens in select commands for `dvc.yaml`: `freeze`/`unfreeze`/`run`/`stage-add`, so we did not notice this before.
2022-09-05 18:49:39 +05:45
dependabot[bot] 65dc1cd08f build(deps-dev): Bump pytest from 7.1.2 to 7.1.3
Bumps [pytest](https://github.com/pytest-dev/pytest) from 7.1.2 to 7.1.3.
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest/compare/7.1.2...7.1.3)

---
updated-dependencies:
- dependency-name: pytest
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-09-03 02:04:01 +03:00
dependabot[bot] 1b103297b7 build(deps-dev): Bump dvc-azure from 2.20.0 to 2.20.2
Bumps [dvc-azure](https://github.com/iterative/dvc-azure) from 2.20.0 to 2.20.2.
- [Release notes](https://github.com/iterative/dvc-azure/releases)
- [Commits](https://github.com/iterative/dvc-azure/compare/2.20.0...2.20.2)

---
updated-dependencies:
- dependency-name: dvc-azure
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-09-03 02:03:46 +03:00
John Henning 887c73b3c6 adjusted formatting for dvc-hdfs 2022-09-02 23:04:59 +03:00
Peter Rowlands 660c17f654 output: save version_id meta 2022-09-01 19:36:53 +03:00
skshetry 49da2eef02 tests: set celery ping_task_timeout 3x the default (#8221)
tests: set celery ping_timeout 3x the default
2022-09-01 16:48:19 +05:45
Ruslan Kuprieiev aff65d42bb deps: bump dvc-azure and dvc-s3 to 2.20.0 2022-09-01 13:00:47 +03:00
skshetry 8968405770 data status: fix path for committed changes in Windows (#8220)
The path we get from GitFileSystem is posixpath, even on Windows. We need to
convert that posixpath to os.path here.
2022-09-01 10:02:08 +05:45
dependabot[bot] b6e8ba6758 build(deps-dev): Bump pylint from 2.14.5 to 2.15.0
Bumps [pylint](https://github.com/PyCQA/pylint) from 2.14.5 to 2.15.0.
- [Release notes](https://github.com/PyCQA/pylint/releases)
- [Commits](https://github.com/PyCQA/pylint/compare/v2.14.5...v2.15.0)

---
updated-dependencies:
- dependency-name: pylint
  dependency-type: direct:development
  update-type: version-update:semver-minor
...
2022-09-01 10:42:16 +08:00
Ruslan Kuprieiev e307a62dc0 deps: bump dvc-data to 0.4.0 2022-09-01 02:59:24 +03:00
Saugat Pachhai (सौगात) 639eeed43b skip tests that depend on hydra.compose in 3.11 2022-08-31 17:24:09 +02:00
David de la Iglesia Castro 91f12395f1 exp run: Support composing and dumping Hydra config.
The feature will be used depending on whether `config.hydra.enabled` is True or False.

Uses `hydra.initialize_config_dir` and `hydra.compose` (from https://hydra.cc/docs/advanced/compose_api/) to build the config and dump it to `params.yaml`. The content of the output file will be overwritten.

`config.hydra.config_dir` and `config.hydra.config_name` can be used to customize the values passed to `hydra.initialize_config_dir` and `hydra.compose`.

Can be combined with `--set-param` overrides.

Closes #8082
2022-08-31 17:24:09 +02:00
Ruslan Kuprieiev e7daeb1c3e deps: bump dvc-data to 0.3.0 2022-08-30 22:46:27 +03:00
Saugat Pachhai (सौगात) d3569035c8 output.get_obj: catch ObjectCorruptedError 2022-08-30 21:31:33 +03:00
David de la Iglesia Castro daee52e176 info: skip missing subprojects 2022-08-30 20:15:41 +03:00
skshetry a8415b01d0 data status: fix quoting on command hints for untracked files (#8211)
data status: fix quoting on command hints
2022-08-30 22:51:39 +05:45
Daniele Trifirò 77f56090ff do not checkout partials imports on fetch 2022-08-30 20:05:09 +03:00
Dave Berenbaum 1d3102f29b data status: update hints to include fetch and checkout (#8209) 2022-08-30 22:05:32 +05:45
skshetry a0cbcaa3c8 Delete CODEOWNERS 2022-08-30 13:12:57 +05:45
David de la Iglesia Castro ab780879d1 info: Include subprojects. 2022-08-30 09:22:39 +02:00
skshetry bfad82a2e3 data status: remove --withdirs, show unknowns in CLI (#8189)
* data status: remove --withdirs, show unknowns in CLI

* data status: only consider unknown from newer object during diff
2022-08-30 12:11:02 +05:45
skshetry e5eec59cb8 test on 3.11 (#8196)
We don't have aiohttp support yet, due to which we have to install
without cythonized extension.

Similarly, there has been some changes in how dataclasses disallows some
mutable arguments to be set as a class property, due to which
`hydra.conf` fails to import in 3.11.

See https://github.com/python/cpython/pull/29867. For now, I have
patched the module and avoid importing as a pytest-plugin.

dvc-hdfs/pyarrow is not there yet, we'll usually see a release 2-3
months after official reelase.

dvc-hdfs is skipped in 3.11 in extras_requires. `--set-params` will
return a nice error message if hydra cannot be imported in 3.11. I
decided to only patch that in tests.
2022-08-29 19:58:17 +05:45
Paweł Redzyński 2a4b83060e plots: support dirs in top level definitions
Fixes: #7914
2022-08-29 10:51:16 +02:00
David de la Iglesia Castro 9e2ebe9fcc resolve_rev: raise DvcException on empty repo. 2022-08-29 01:50:14 +03:00
David de la Iglesia Castro 2cef130191 repo: Handle no commits for exp show and plots diff.
Make it consistent with all the other commands that use `brancher` (i.e. `dvc diff`, `metrics diff`, `params diff`)

Closes #8163
2022-08-29 01:50:14 +03:00
David de la Iglesia Castro 17b9b1571e api: Add details forparams_show stages syntax.
Explain `stages` syntax for cases where the api is used from a directory different to the one the `dvc.yam` is located.
2022-08-29 01:49:38 +03:00
skshetry 37c8ef3406 Update dvc/commands/plots.py 2022-08-29 01:46:47 +03:00
b7aea414e6 plots templates: change ui to not dump to file
Update dvc/commands/plots.py

Co-authored-by: David de la Iglesia Castro <[email protected]>

Update tests/unit/command/test_plots.py

Co-authored-by: David de la Iglesia Castro <[email protected]>

Update dvc/commands/plots.py

Co-authored-by: Paweł Redzyński <[email protected]>

fixed test
2022-08-29 01:46:47 +03:00
pre-commit-ci[bot] 126a64618b [pre-commit.ci] auto fixes from pre-commit.com hooks
for more information, see https://pre-commit.ci
2022-08-29 01:43:43 +03:00
Alex Hall 8bdf9b1138 Better error message when using remove on file instead of dvc file 2022-08-29 01:43:43 +03:00
Ruslan Kuprieiev 9cb242c8a5 deps: bump dvc-http and dvc-gs 2022-08-28 23:13:18 +03:00
Ruslan Kuprieiev 11802426de pyinstaller: don't forget dvc_* plugins
Fixes #8194
2022-08-28 21:05:25 +03:00
dependabot[bot] b376044c45 build(deps): Bump dvc-data from 0.1.23 to 0.2.0
Bumps [dvc-data](https://github.com/iterative/dvc-data) from 0.1.23 to 0.2.0.
- [Release notes](https://github.com/iterative/dvc-data/releases)
- [Commits](https://github.com/iterative/dvc-data/compare/0.1.23...0.2.0)

---
updated-dependencies:
- dependency-name: dvc-data
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-08-27 03:18:20 +03:00
David de la Iglesia Castro 7b3b4b373b api: Fix params_show for untracked targets.
If an untracked target is provided alongside `stages` or `deps`, don't load the parameters from the target and raise no params found instead.

Closes #8161
2022-08-26 12:00:45 +02:00
Peter Rowlands (변기호) 512bfc4305 tests: mark exp queue func tests xfail (#8186) 2022-08-25 21:04:05 +05:45
skshetry 54ee8c0d77 data status: make untracked files to be relative paths (#8184) 2022-08-25 19:29:43 +05:45
skshetry 063eb6904d data status: test cleanup and improvements (#8185) 2022-08-25 18:50:46 +05:45
Ruslan Kuprieiev 3e183d62ed deps: bump dvc-* plugins to 2.19.0
These are the same packages but with correct versions to sync up with existing packages that we generated in conda over the years.
2022-08-25 14:44:13 +03:00
David de la Iglesia Castro e815bbe211 metrics: show: Fix show from subdir.
This was a regression introduced in #7712.
Calling `repo.metrics.show` from a subdir stopped returning metrics because `fs.isfile(metric)` check returned false.
2022-08-25 13:02:22 +02:00
Saugat Pachhai (सौगात) 2374c72105 status: add unknown state 2022-08-25 13:23:18 +03:00
Saugat Pachhai (सौगात) 5cf1421c61 fix tests 2022-08-25 13:23:18 +03:00
skshetry a6a2feea62 Update setup.cfg 2022-08-25 13:23:18 +03:00
Saugat Pachhai (सौगात) 6c1d00c2d9 fix diff when no object exists by falling back to shallow_diff 2022-08-25 13:23:18 +03:00
Saugat Pachhai (सौगात) f72456f67c add shallow_diff 2022-08-25 13:23:18 +03:00
skshetry 2c556f58d3 data status: fix not-in-cache hint (#8181)
See https://github.com/iterative/dvc.org/pull/3812\#discussion_r936625617.
2022-08-25 15:39:59 +05:45
Ruslan Kuprieiev 460d08057c Create hook-fsspec.py 2022-08-24 23:39:46 +03:00
Ronan Lamy cc6deb24c8 fs: remove obsolete special cases 2022-08-23 23:20:42 +03:00
Ronan Lamy e681030c72 fs: simplify filtering out dvcfiles 2022-08-23 23:20:42 +03:00
Ronan Lamy 7a51548214 fs: Add fast path for the no subrepo case in _get_fs_pair() 2022-08-23 23:20:42 +03:00
Ronan Lamy 8e99fd0091 ls: Use fs.walk(..., detail=True) instead of separate call to fs.info() 2022-08-23 23:20:42 +03:00
Ronan Lamy 7e5a586f85 fs: Remove redundant .isdvc() check
fs.walk(..., dvc_only=True) already outputs dvc objects only, so
fs.isdvc(path, recursive=True) is always True.
2022-08-23 23:20:42 +03:00
Ronan Lamy c76a84b7b1 fs: remove one call to ._get_key() in _DvcFS._get_fs_pair() 2022-08-23 23:20:42 +03:00
Daniele Trifirò 26008f1559 import-url/update: add --no-download flag
add --no-download flag to dvc import-url/dvc update to only create/update .dvc
files without downloading the associated data.

Created .dvc files can be fetched using `dvc pull` or can be
updated using `dvc update --no-download`.
2022-08-23 23:07:01 +03:00
Daniele Trifirò 92d680ff94 tests: fix typo in test name 2022-08-23 23:07:01 +03:00
Daniele Trifirò c69c46d08c fix error message on fetch/pull/checkout failure 2022-08-23 23:07:01 +03:00
skshetry 6477ade557 build: skip install fpm and ruby on Windows (#8169) 2022-08-23 18:02:47 +05:45
skshetry 78dd045d29 ci: drop __token__, it's the default (#8157) 2022-08-22 08:40:31 +05:45
skshetry 2ddbbdf5a4 ci: refactor binary executable building workflow (#8156)
This now uses the matrix to build executables from same jobs definition.
2022-08-22 08:38:58 +05:45
skshetry 17a565023b build: bump ruby to 2.6 (#8154) 2022-08-20 23:32:23 +05:45
skshetry b5d5728bf8 deps: bump dvc-data to 0.1.22 and dvc-s3 to 0.0.2 (#8153)
* deps: bump dvc-data to 0.1.22

* deps: bump dvc-s3 to 0.0.2
2022-08-20 22:59:40 +05:45
skshetry 055641a51e deps: bump dvc-data to 0.1.21 (#8147) 2022-08-19 13:22:56 +05:45
Ruslan Kuprieiev fc509d4e4a Delete hook-googleapiclient.model.py
This is already provided by pyinstaller's standard hooks https://github.com/pyinstaller/pyinstaller-hooks-contrib/blob/master/src/_pyinstaller_hooks_contrib/hooks/stdhooks/hook-googleapiclient.model.py
2022-08-18 21:07:57 +03:00
Ruslan Kuprieiev a67fea2235 doctor: ignore missing plugins 2022-08-18 21:02:41 +03:00
skshetry f062b52e05 Add python version label to the readme (#8146) 2022-08-18 18:34:58 +05:45
Paweł Redzyński 25166f3e02 plots: show-vega: adjust renderers before show vega
Fixes: iterative/cml#1112
2022-08-18 12:52:52 +02:00
Ruslan Kuprieiev a79ea15827 tests: webhdfs: fix linter 2022-08-18 12:43:12 +03:00
Ruslan Kuprieiev 8db9a2f70f deps: bump dvc-data to 0.1.19 2022-08-18 12:43:12 +03:00
David de la Iglesia Castro ff2f2e433f pyinstaller: Restrict to 5.0
5.2 didn't fix https://github.com/iterative/dvc/issues/7949
2022-08-18 12:42:11 +03:00
Ruslan Kuprieiev 3fc9f323a7 fs: don't import SSHFileSystem 2022-08-18 00:23:40 +03:00
Ruslan Kuprieiev bf0aa5e8aa repo: data: ignore pylint false-positives 2022-08-17 23:02:22 +03:00
Ruslan Kuprieiev 3b3866323e deps: bump dvc-data to 0.1.18 2022-08-17 23:02:22 +03:00
Ruslan Kuprieiev 3c3cbee7fd deps: bump dvc-http to 0.0.2 2022-08-16 22:31:05 +03:00
Ruslan Kuprieiev 4a95020155 gs: add endpointurl 2022-08-14 13:39:03 +03:00
Ruslan Kuprieiev 3a429a869e tests: lockfile: use fs_path 2022-08-13 23:09:21 +03:00
Ruslan Kuprieiev 99465b25b5 deps: bump dvc-data to 0.1.17 2022-08-13 22:43:46 +03:00
Ruslan Kuprieiev fcdad4d229 deps: bump dvc-data to 0.1.16 2022-08-13 22:25:24 +03:00
Ruslan Kuprieiev 2e8b463795 deps: bump dvc-data 2022-08-12 11:58:44 +03:00
Ivan Shcheklein 206e00ccbe guard rwlock file to prevent not locked repo edits 2022-08-11 15:54:42 +03:00
Peter Rowlands f13443477d exp run: account for repo root when staging git-deps 2022-08-11 13:48:28 +09:00
Dave Berenbaum 9837747eef exp run: ui tweak (#8124) 2022-08-11 09:14:43 +05:45
dependabot[bot] cf5dfc517a build(deps-dev): Bump filelock from 3.7.1 to 3.8.0 (#8125)
Bumps [filelock](https://github.com/tox-dev/py-filelock) from 3.7.1 to 3.8.0.
- [Release notes](https://github.com/tox-dev/py-filelock/releases)
- [Changelog](https://github.com/tox-dev/py-filelock/blob/main/docs/changelog.rst)
- [Commits](https://github.com/tox-dev/py-filelock/compare/3.7.1...3.8.0)

---
updated-dependencies:
- dependency-name: filelock
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2022-08-11 09:14:12 +05:45
dependabot[bot] c134d4ab8e build(deps): Bump dvc-data from 0.1.13 to 0.1.14 (#8117)
Bumps [dvc-data](https://github.com/iterative/dvc-data) from 0.1.13 to 0.1.14.
- [Release notes](https://github.com/iterative/dvc-data/releases)
- [Commits](https://github.com/iterative/dvc-data/compare/0.1.13...0.1.14)

---
updated-dependencies:
- dependency-name: dvc-data
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2022-08-10 09:17:12 +05:45
skshetry 7a0b3e9377 Update tests/func/experiments/test_queue.py 2022-08-09 17:50:48 +08:00
karajan1001 d6f8e5a507 Add flaky to a queue related test.
This is a flaky, the queue tasks status might remain "Running" even if
it had already been completed, beside sometimes I also noticed it raise
a pytest fixture error.
2022-08-09 17:50:48 +08:00
Alex HallandDavid de la Iglesia Castro 2ca1d6c7c1 refactor: extract load_path function from common code using LOADERS (#7983)
Following up on https://github.com/iterative/dvc/pull/7965#discussion_r912684074

Co-authored-by: David de la Iglesia Castro <[email protected]>
2022-08-09 09:09:43 +00:00
Ivan Shcheklein f7fbac1eed stage add: fix hint message consistency (#8112) 2022-08-09 11:18:37 +05:45
skshetry 7c1e339650 data status: handle path joining properly for tree leaves/items (#8107) 2022-08-09 09:34:15 +05:45
Ivan Shcheklein b7c0c41262 lock test name fix 2022-08-09 00:47:04 +03:00
karajan1001 9180a718c1 queue status: show final experiment name
fix: #8059

1. showing final experiment name in `queue status` for successful tasks.
2. Add a unit test for `celery_queue.status`
2022-08-08 15:49:51 +09:00
karajan1001 306456d453 queue status: ERROR: Invalid experiment
fix: #8014
> ERROR: Invalid experiment '{entry.stash_rev[:7]}'.

This happens when the queue task failed from a scm error.

{"exc_type": "GitMergeError", "exc_message": ["Cannot fast-forward HEAD
to '05100047a341f2fa4a02421289d48f84d8c45e86'"], "exc_module": "dvc.scm"}.

And the failed task neither create a infofile nor create a fail_stash.

1. Didn't raise DvcException if no infofile found for failed tasks.
   (success tasks still raise it)
2. Add a new unit test for this.
2022-08-08 15:07:11 +09:00
Ivan Shcheklein 95421a5605 fix logic for unlock on unlocked lock calls 2022-08-08 14:25:10 +09:00
David de la Iglesia Castro 31635b8312 exp run: Use hydra for parsing --set-param.
- Overriding a config value : foo.bar=value
- Appending a config value : +foo.bar=value
- Appending or overriding a config value : ++foo.bar=value
- Removing a config value : ~foo.bar, ~foo.bar=value

See https://hydra.cc/docs/advanced/override_grammar/basic/#modifying-the-config-object

---

Breaking changes:

To modify a list, `foo[0]=bar` must now be passed as `foo.0=bar`.

Modifying a nested list inside a dictionary is not supported by omegaconf.

---

Closes #4883
Closes #5868
Closes #6129
2022-08-05 17:53:24 +02:00
David de la Iglesia Castro 45ac64ddde api: Fix params_show when stage has no params
Also fix when `deps=True` and no params in the entire pipeline.

Closes #8064
2022-08-05 16:26:19 +03:00
Sami Abdul-Wahid c7b22b467c Upgrade from toml to tomlkit library (#7468)
* Upgrade from toml to tomlkit library
2022-08-05 18:58:22 +05:45
karajan1001 ae83e3c787 Now exp remove can clean up failed tasks and associated successful tasks
fix: #8018
fix: #8071

1. Add one line to make `exp remove` can remove failed tasks, and will
   also delete associated successful tasks
2. Add a new unit test for this behaviour.
3. Solve the unstable test_queue problem.
2022-08-05 16:09:51 +09:00
karajan1001andPeter Rowlands f68c4e9a4b Refactor dvc.repo.experiment.remove to make matching exp by name also
return its queue entry info.

Some review changes.

Co-authored-by: Peter Rowlands (변기호) <[email protected]>
2022-08-05 16:09:51 +09:00
karajan1001 2182c4508d Make exp remove flags and arguments mutually exclusive.
1. Current behavior didn't follow the either or description.
2. Make the underlying logic more clear.
2022-08-05 16:09:51 +09:00
karajan1001 eaab253e2b Refactor dvc.repo.experiments.queue.remove.py
Make a better API for other place to call.
2022-08-05 16:09:51 +09:00
karajan1001 905c416ffc Decouple queue clear and remove commands 2022-08-05 16:09:51 +09:00
karajan1001 a6063307b5 Replace the _clear_queue function with celery_queue.clear 2022-08-05 16:09:51 +09:00
Ruslan Kuprieiev 704191b15a output: resolve relative to stage.wdir only on the same fs
Leftover from https://github.com/iterative/dvc/pull/8091
2022-08-04 19:25:31 +03:00
dependabot[bot] 5625a94365 build(deps): Bump dvc-data from 0.1.12 to 0.1.13
Bumps [dvc-data](https://github.com/iterative/dvc-data) from 0.1.12 to 0.1.13.
- [Release notes](https://github.com/iterative/dvc-data/releases)
- [Commits](https://github.com/iterative/dvc-data/compare/0.1.12...0.1.13)

---
updated-dependencies:
- dependency-name: dvc-data
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-08-04 20:26:18 +05:45
dependabot[bot] 634894d3b1 build(deps): Bump dvc-data from 0.1.11 to 0.1.12
Bumps [dvc-data](https://github.com/iterative/dvc-data) from 0.1.11 to 0.1.12.
- [Release notes](https://github.com/iterative/dvc-data/releases)
- [Commits](https://github.com/iterative/dvc-data/compare/0.1.11...0.1.12)

---
updated-dependencies:
- dependency-name: dvc-data
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-08-04 13:22:48 +03:00
Ruslan Kuprieiev 0ce4e769f1 repo: make lock/rwlock kinda work on non local fs 2022-08-03 21:10:28 +03:00
Ruslan Kuprieiev 2c3655f7ff repo: use fs.makedirs instead of os.makedirs 2022-08-03 21:10:28 +03:00
Ruslan Kuprieiev 52bdd90840 repo: support basic workflow on s3fs/adlfs/etc 2022-08-03 21:10:28 +03:00
Ruslan Kuprieiev fcc7240617 odb: use odb.path instead of odb.cache_dir 2022-08-03 21:10:28 +03:00
Ruslan Kuprieiev ecd98bdf7d odbmgr: separate repo and local odbs 2022-08-03 21:10:28 +03:00
Ruslan Kuprieiev e525d9bedb deps: bump dvc-data to 0.1.11 2022-08-03 21:10:28 +03:00
Yury 27b2a5cd6d revert logger to lazy formatting 2022-08-03 13:18:10 +03:00
Peter Rowlands 8518fe639f dvc-task: update to 0.1.2 2022-08-03 16:44:36 +09:00
Ruslan Kuprieiev 496599518a deps: bump dvc-data to 0.1.9 2022-08-02 23:57:34 +03:00
Yury 116ad512e4 plots: remove legacy code from verify_metrics
Fixes: #7988
2022-08-02 14:38:29 +09:00
Ruslan Kuprieiev 6a7b55fdf7 datafs: use dvc-data's datafs 2022-08-02 03:13:06 +03:00
Paweł Redzyński ed62ddb373 cmd: plots: update messaging
Related: iterative/dvc.org#3691
2022-08-01 17:29:13 +02:00
Peter Rowlands 38b1a41f2b build: add pyinstaller hooks for dvc-task and celery 2022-08-01 12:26:53 +03:00
skshetry 6f0736142b deps: bump dvc-data to 0.1.6 2022-07-28 21:45:23 +05:45
Gao 737d7cda4b queue: missing f format for the error message. 2022-07-28 21:15:51 +08:00
dberenbaum 75745a70b4 readme: add exps to quickstart 2022-07-28 10:16:32 +02:00
Ivan Shcheklein 9ff18502b6 add gdrive remote profile field to config 2022-07-27 23:29:18 +03:00
Paweł Redzyński 44a4fb59a7 plots: account for wdir in stage plots
Fixes: #8003
2022-07-26 13:59:24 +02:00
Paweł Redzyński 6543683c0c project: update dvc render and dvclive test dependencies 2022-07-26 13:40:59 +02:00
pre-commit-ci[bot] 8fee26c3d2 [pre-commit.ci] auto fixes from pre-commit.com hooks
for more information, see https://pre-commit.ci
2022-07-26 15:02:09 +05:45
Gaoandskshetry 7c8994b538 Update dvc/repo/experiments/queue/workspace.py
Co-authored-by: skshetry <[email protected]>
2022-07-26 15:02:09 +05:45
karajan1001 9dfe88e2b1 exp run: workspace status wrong
fix: #8045
2022-07-26 15:02:09 +05:45
Saugat Pachhai (सौगात) d0eda1d538 data status: add spinners during diff 2022-07-25 19:32:19 +05:45
Saugat Pachhai (सौगात) 896acedb07 data status: optimize printing status list
`--untracked-files` and `--unchanged` coupled with `--granular`
puts a lot of stress on `show_status`. Currently, with those options,
dvc spends ~26s on `_show_status` function.

Unhappy with the above result, I looked into improving the situation with
`console.out`. It did reduce that to 9s but it still felt like a lot.

Then I dropped to good old colorama, which dropped to 3s(term)/1.24(redirected).
I tested with buffering output which dropped this further to
~600ms(term)/~100ms(redirected).

This may seem like premature optimization, but this was preventing me
from figuring out perf issues in granular outputs, and I believe the
user should not be penalize for using feature that we already offer.
2022-07-25 17:47:23 +05:45
Saugat Pachhai (सौगात) fd7dcae8aa cli/log: handle SIGPIPE errors
`dvc <command> | head` for example could fail with SIGPIPE and
would print a traceback with BrokenPipeError exception. Now we
redirect do /dev/null in case of error as suggested in Python's
docs: https://docs.python.org/3/library/signal.html\#note-on-sigpipe.
2022-07-25 16:38:09 +05:45
karajan1001 a4763593c7 queue: clean local EXEC_HEAD & EXEC_BASELINE after we run exp with queue.
fix: #8031

Currently when we use tmp directory to run a experiment, we set
`EXEC_HEAD` , `EXEC_BASELINE` and `EXEC_MERGE` heads locally but forget
to remove it. This cause some problem when we use `exp show`

1. Clean `EXEC_HEAD` , `EXEC_BASELINE` and `EXEC_MERGE` after we pushed
   them to tmp_dir
2. Add a unit test for it.

Co-authored-by:
2022-07-25 18:17:12 +08:00
dberenbaum cc2d2495c0 readme: link to docs for related tech 2022-07-22 23:31:59 +02:00
Jorge Orpinel 9b30ef474a exp branch: update -h stdout
per https://github.com/iterative/dvc.org/pull/3780#pullrequestreview-1043024878
2022-07-22 23:30:14 +03:00
David de la Iglesia Castro f95e6340e0 utils: remove dead code 2022-07-22 16:30:51 +02:00
Saugat Pachhai (सौगात) c3ac4f84bf data status: fix untracked files output for subdir 2022-07-22 16:29:04 +03:00
Saugat Pachhai (सौगात) 61729ff66a use M fixture for concise tests 2022-07-22 16:29:04 +03:00
Saugat Pachhai (सौगात) 3dfcb82e5c add tests for data:status command 2022-07-22 16:29:04 +03:00
Saugat Pachhai (सौगात) 340a158595 introduce new dvc data status command 2022-07-22 16:29:04 +03:00
Ruslan Kuprieiev 4b965c3f9f fs: gdrive: add gdrive_acknowledge_abuse
Fixes https://github.com/iterative/dvc/issues/7832
2022-07-22 14:58:45 +03:00
dependabot[bot] b5220129e7 build(deps): Bump pyinstaller from 5.0 to 5.2
Bumps [pyinstaller](https://github.com/pyinstaller/pyinstaller) from 5.0 to 5.2.
- [Release notes](https://github.com/pyinstaller/pyinstaller/releases)
- [Changelog](https://github.com/pyinstaller/pyinstaller/blob/develop/doc/CHANGES.rst)
- [Commits](https://github.com/pyinstaller/pyinstaller/compare/v5.0...v5.2)

---
updated-dependencies:
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  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-07-22 14:56:13 +03:00
Ruslan Kuprieiev 7a4886386f deps: bump dvc-data to 0.1.4 2022-07-21 22:53:26 +03:00
Ruslan Kuprieiev ae143505e4 deps: bump dvc-data to 0.1.3 2022-07-21 19:44:38 +03:00
Ruslan Kuprieiev b9b2e5bbd9 Delete test_gdrive.py
Moved to dvc-gdrive.
2022-07-21 19:34:04 +03:00
Ruslan Kuprieiev 66420439c9 deps: bump dvc-data to 0.1.2 2022-07-21 19:16:21 +03:00
David de la Iglesia Castro ed1d8e2b8f exp: init: Use persist: true if checkpoint. 2022-07-21 13:21:06 +02:00
dberenbaum 0b07354361 readme: drop table of contents
readme: top-level links in comments
2022-07-21 09:01:17 +02:00
dependabot[bot] fa200c9b4c build(deps-dev): Bump pylint from 2.14.4 to 2.14.5
Bumps [pylint](https://github.com/PyCQA/pylint) from 2.14.4 to 2.14.5.
- [Release notes](https://github.com/PyCQA/pylint/releases)
- [Commits](https://github.com/PyCQA/pylint/compare/v2.14.4...v2.14.5)

---
updated-dependencies:
- dependency-name: pylint
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-07-20 10:04:44 +05:45
dependabot[bot] 1aaf836340 build(deps-dev): bump mypy from 0.961 to 0.971
Bumps [mypy](https://github.com/python/mypy) from 0.961 to 0.971.
- [Release notes](https://github.com/python/mypy/releases)
- [Commits](https://github.com/python/mypy/compare/v0.961...v0.971)

---
updated-dependencies:
- dependency-name: mypy
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-07-20 10:36:20 +08:00
Jorge Orpinel Perez f51e96fe6d Revert "readme: roll back non-vscode changes"
This reverts commit 5482de3582e366b86fb4923ba95e72cc39a2e37e.
2022-07-20 07:16:26 +05:45
Jorge Orpinel Perez afefc0ddc1 readme: add paragraph about dvc exp, add GS links 2022-07-20 07:16:26 +05:45
Jorge Orpinel Perez bd82af2e1e readme: better Studio mention 2022-07-20 07:16:26 +05:45
Jorge Orpinel Perez 34f20bf69f readme: 1 sentence = 1 line formatting 2022-07-20 07:16:26 +05:45
Jorge Orpinel Perez 2c339a7fb3 readme: move How it works after Quick started sections 2022-07-20 07:16:26 +05:45
Jorge Orpinel Perez ec4d61e2b1 readme: improve and reformat How it works 2022-07-20 07:16:26 +05:45
Ruslan Kuprieiev 94eec50d27 deps: bump dvc-data to 0.1.1 2022-07-19 14:55:28 +03:00
Ruslan Kuprieiev dd32ff6206 deps: bump dvc-data to 0.0.31 2022-07-19 04:54:34 +03:00
Ruslan Kuprieiev 52a9c58cc0 deps: bump dvc-data to 0.0.30 2022-07-19 04:36:41 +03:00
Ruslan Kuprieiev 01855b7dcf deps: bump dvc-data to 0.0.28 2022-07-18 21:46:22 +03:00
Ruslan Kuprieiev 38f10884a7 deps: bump dvc-data to 0.0.27 2022-07-18 19:15:02 +03:00
Ruslan Kuprieiev 9e6d2163df deps: bump dvc-data to 0.0.26 2022-07-18 01:03:06 +03:00
skshetry dbfe88510f deps: bump dvc-data to 0.0.24 2022-07-15 22:40:26 +05:45
Alexander Guschin c04eb40f90 Update setup.cfg 2022-07-14 18:12:47 +05:45
David de la Iglesia Castro c2668110b7 gc: Add --rev and --num.
Closes #7695
2022-07-12 20:13:07 +02:00
Peter Rowlands 80272a0770 queue: cleanup flaky tests 2022-07-12 21:39:49 +09:00
Peter Rowlands 5a6e363c16 queue: cleanup help/usage to match docs 2022-07-12 21:39:49 +09:00
Peter Rowlands ed593493df queue start: simply jobs validation 2022-07-12 21:39:49 +09:00
Peter Rowlands 3130a9a75f queue status: use summary style output for worker status 2022-07-12 21:39:49 +09:00
Peter Rowlands eeb516e7d3 queue: disable dvc-machine handling for queue 2022-07-12 21:39:49 +09:00
karajan1001 c0368e1756 Refactor: Move remove_revs from BaseStashQueue to expstash 2022-07-12 21:39:49 +09:00
GaoandPeter Rowlands e19824fd2e Update dvc/repo/experiments/queue/base.py dvc/repo/experiments/queue/remove.py
Co-authored-by: Peter Rowlands (변기호) <[email protected]>
2022-07-12 21:39:49 +09:00
karajan1001 02681f2e65 Rename _all to all_ remove some tricky func test. 2022-07-12 21:39:49 +09:00
karajan1001 b37524603a Queue remove: Can remove successed,failed tasks msgs
Followed from #7592

1. Seperate remove method to a new file.
2. Add queued, failed, processed flags to remove.
3. Add new unit tests for queue status --queue/fail/success
4. Implement methods to remove done tasks.
5. add some new unit and functional test for celery_queue.remove
6. bump into dvc-task version 0.0.13
2022-07-12 21:39:49 +09:00
Peter Rowlands ff3b23c1b6 dvc-task: bump to 0.1.0
- ends requirement to install kombu + dvc-task from source
2022-07-12 21:39:49 +09:00
Peter Rowlands 4e005411fe exp show: use unique executor name for dvc-task & standalone tempdir exps 2022-07-12 21:39:49 +09:00
Peter Rowlands 1f7b802f79 exp show: collect running standalone tempdir experiments 2022-07-12 21:39:49 +09:00
Peter Rowlands 7c2bd340db exp run: update --run-all logs behavior 2022-07-12 21:39:49 +09:00
Peter Rowlands 9e0788aa3a exp run: preserve --temp standalone behavior 2022-07-12 21:39:49 +09:00
Peter Rowlands e1cf62a583 exp queue: add separate standalone/tempdir implementation 2022-07-12 21:39:49 +09:00
Peter Rowlands ce4cee184e exp queue: separate queue implementations into their own modules 2022-07-12 21:39:49 +09:00
Peter Rowlands db52c75221 dvc-task: bump to 0.0.12 2022-07-12 21:39:49 +09:00
karajan1001andPeter Rowlands bd74172633 queue status: add some unit test to increase the coverage
Followed by #7903

Add a new unit test to increase the coverage of test

Co-authored-by: Peter Rowlands (변기호) <[email protected]>
2022-07-12 21:39:49 +09:00
karajan1001 e5b4946309 queue status: some reviewed changes.
1. No `start -j` will only start worker (1,2,3,...,j). Will not start
   j new worker.
2. Distinguish active worker and idle worker.
2022-07-12 21:39:49 +09:00
karajan1001 3918db945a queue status: will show the current worker status
fix: #7950
Currently queue worker status are not show in `queue status` makes it
hard to tell if the worker is still living.

1. add a new method `active_worker` to return the currently running
   worker node name.
2. give every worker a unique name.
3. `queue status` will show how much worker running at present.
2022-07-12 21:39:49 +09:00
karajan1001 25b5d1d522 queue start: give every worker a unique name
Currently, all of our celery workers are called `dvc-exp-worker` and
they will write to the same log path.

We give every single worker a unique name and seperate they logs if
under a debug log level
2022-07-12 21:39:49 +09:00
dberenbaum 164efe089f queue: ui cleanup 2022-07-12 21:39:49 +09:00
karajan1001 4e82eb4978 queue remove: add remove support for short revs(#7840)
fix: #7840

Now queue remove can not accept short rev as name.

1. Refactor the queue entry match in `queue remove`
2. Better output if no queue task found for name.
3. short rev on kill can only be work for rev with lens longer than 4
2022-07-12 21:39:49 +09:00
karajan1001 16bb31a284 queue worker shutdown: disable restore
fix: #7884
The complete task restored back to the queue causing a task duplication.
Might related to a bug from the celery celery/celery#5663

Follow what in https://github.com/celery/celery/issues/5663#issuecomment-734871162
Disabled the restore_at_shutdown
2022-07-12 21:39:49 +09:00
karajan1001 d7a917e2ab queue status: use a short rev to represent tasks
1. use a short rev to represent tasks
2. Add a unit test for the result shown
2022-07-12 21:39:49 +09:00
Peter Rowlands 8dfcb0a36d exp run: update Ctrl+C handling for --temp and --run-all 2022-07-12 21:39:49 +09:00
Peter Rowlands 67cbdf6de8 exp queue: remove dvc queue attach command 2022-07-12 21:39:49 +09:00
Peter Rowlands f12091002f exp queue: add dvc queue logs command 2022-07-12 21:39:49 +09:00
Peter Rowlands 570f4345a0 exp queue: implement queue.logs() support 2022-07-12 21:39:49 +09:00
Peter Rowlands 425d0701c9 exp queue: return completed exps in queue status 2022-07-12 21:39:49 +09:00
Peter Rowlands 99a11f7056 exp: save failed queue runs in separate stash/reflog 2022-07-12 21:39:49 +09:00
Peter Rowlands 8ab46c1549 exp: simplify shutdown behavior 2022-07-12 21:39:49 +09:00
Peter Rowlands 8b663f2719 exp: use single atomic task instead of chaining 2022-07-12 21:39:49 +09:00
Peter Rowlands c0db513cf0 dvc-task: bump to 0.0.11 2022-07-12 21:39:49 +09:00
Peter Rowlands bf1bc9625d exp: use celery async wait in queue get_result 2022-07-12 21:39:49 +09:00
Peter Rowlands 686c15dab9 exp: use a single chain for all exp tasks
- removes separated scheduling for setup_exp
2022-07-12 21:39:49 +09:00
Peter Rowlands 10aa833f80 dvc-task: bump to 0.0.10 2022-07-12 21:39:49 +09:00
Peter Rowlands 9f5af04963 exp: update tests for match_queue_entry refactor 2022-07-12 21:39:49 +09:00
Peter Rowlands ac5d72967a dvc-task: bump to 0.0.9 2022-07-12 21:39:49 +09:00
karajan1001 bcc2f3b389 Reorganized get_queue_entry_by_names 2022-07-12 21:39:49 +09:00
karajan1001 3d0ee0d202 exp queue: monitor queue status (#7590)
fix: #7590
1. Add two new command `queue status` and `queue attach`
2. Add unit test for the CLI
3. Make `Running` exps can be found by `get_queue_entry_by_names`
2022-07-12 21:39:49 +09:00
karajan1001 6b8c87b58a Add more unit test and implement a new method
1. Add some more unit test for `celery_queue.kill`
2. Implement `kill` argument for `celery_queue.shutdown`
3. Use dataclass's internal methods instead of `__eq__`
2022-07-12 21:39:49 +09:00
Peter Rowlands fee1d02791 dvc-task: update to 0.0.8 2022-07-12 21:39:49 +09:00
Peter Rowlands d766c01d2d exp: enable late_ack to disable celery prefetch 2022-07-12 21:39:49 +09:00
Peter Rowlands dc56c4c9b0 exp: use full task chain when checking active tasks 2022-07-12 21:39:49 +09:00
Peter Rowlands 7ece26d58a tests: re-enable exp show celery tests 2022-07-12 21:39:49 +09:00
Peter Rowlands f26664a569 exp: re-enable run --run-all with celery queue 2022-07-12 21:39:49 +09:00
Peter Rowlands 4b0c65093a tests: use pytest-celery for exp tests 2022-07-12 21:39:49 +09:00
karajan1001 12fc8c4e7d exp queue: Add two command queue start and stop (#7589)
fix: #7589

1. Add two sub-command `dvc queue start` and `dvc queue stop`
2. Add a unit test to test them
2022-07-12 21:39:49 +09:00
karajan1001andPeter Rowlands a6cb4eb72e exp queue: remove queued experiments(#7591)
fix: #7591
1. Add a new command `dvc queue`
2. Add two sub-command `dvc queue remove` and `dvc queue kill`
3. Add a unit test to test them

Co-authored-by: Peter Rowlands (변기호) <[email protected]>
2022-07-12 21:39:49 +09:00
karajan1001 4df5a1321d exp: implement internal queue.kill support(#7587)
fix: #7587
1. Add implement kill method for local queue class
2. Add a test to make sure the following job will be success after the
   original job was killed.
3. Some refactoring work on `exp remove`
2022-07-12 21:39:49 +09:00
Peter Rowlands 22deca3a6a exp: use celery threadpool worker instead of prefork 2022-07-12 21:39:49 +09:00
Peter Rowlands dc4292c602 exp: implement queue shutdown 2022-07-12 21:39:49 +09:00
Peter Rowlands 56f90eb3c9 exp: add test_queue unit test helper for celery queue 2022-07-12 21:39:49 +09:00
Peter Rowlands 1c474e8f30 exp: re-enable most tmpdir/queue tests 2022-07-12 21:39:49 +09:00
Peter Rowlands 24654fe16c exp: use dvc.daemon to run worker on windows 2022-07-12 21:39:49 +09:00
Peter Rowlands 44820e74a3 exp: wait for task collection when getting exp result 2022-07-12 21:39:49 +09:00
Peter Rowlands c16908e9fc exp: use queue remove in gc 2022-07-12 21:39:49 +09:00
Peter Rowlands 33dbdd20af exp: exclude celery stash ref from util iterators 2022-07-12 21:39:49 +09:00
Peter Rowlands 69d7bdd0c0 exp: generate unique worker node names per DVC repo 2022-07-12 21:39:49 +09:00
Peter Rowlands b9f4398826 exp: start migrating info logging to ui 2022-07-12 21:39:49 +09:00
Peter Rowlands a6e7d43668 exp: return exp results for celery runs 2022-07-12 21:39:49 +09:00
Peter Rowlands e2ee69ddb2 dvc-task: update to 0.0.6 2022-07-12 21:39:49 +09:00
Peter Rowlands e8448345f1 exp: follow output on run-all 2022-07-12 21:39:49 +09:00
Peter Rowlands acab008c65 dvc-task: update to 0.0.3 2022-07-12 21:39:49 +09:00
Peter Rowlands 8c74775a4e exp: autostart celery worker 2022-07-12 21:39:49 +09:00
Peter Rowlands 9b31a4b463 exp: support remove from celery queue 2022-07-12 21:39:49 +09:00
Peter Rowlands 9f022c576c dvc-task: update to 0.0.2 2022-07-12 21:39:49 +09:00
Peter Rowlands 316029a9d2 exp: use queue status in exp show 2022-07-12 21:39:49 +09:00
Peter Rowlands 34fe643cee exp: add queue.iter_active for iterating over active exps 2022-07-12 21:39:49 +09:00
Peter Rowlands 6a01cc530e exp: use queue.iter_queued to get queued status in exp show 2022-07-12 21:39:49 +09:00
Peter Rowlands 81475bee09 dvc-task: update to 0.0.1 2022-07-12 21:39:49 +09:00
Peter Rowlands a167dff019 exp: implement celery exp task collection 2022-07-12 21:39:49 +09:00
Peter Rowlands cffd587952 exp: add queue-worker plumbing command 2022-07-12 21:39:49 +09:00
Peter Rowlands a0ae9d3f45 exp: migrate workspace repro to queues 2022-07-12 21:39:49 +09:00
Peter Rowlands e74f8f9e11 exp: add naive workspace queue 2022-07-12 21:39:49 +09:00
Peter Rowlands e45ca1e830 exp: start moving queueing/execution from __init__ 2022-07-12 21:39:49 +09:00
Peter Rowlands 46c734eb7e exp: temporarily mark tmpdir/queue tests as xfail 2022-07-12 21:39:49 +09:00
Peter Rowlands c17f7f03bd exp: initial celery app/task setup 2022-07-12 21:39:49 +09:00
Peter Rowlands 7113568c60 exp: refactor base.py into refs.py and exceptions.py 2022-07-12 21:39:49 +09:00
Peter Rowlands 6143146974 exp: refactor stash handling into separate module 2022-07-12 21:39:49 +09:00
15ada9a1c3 Implement --date to exp gc
1. Implement `--time` to `exp gc`
2. add a unit test for it.
3. Rename `--time` to `--date` and change the warning msg.
4. To get a better msg for `gc` and `exp gc`

Co-authored-by: Peter Rowlands (변기호) <[email protected]>
Co-authored-by: Dave Berenbaum <[email protected]>
2022-07-12 13:53:46 +02:00
karajan1001andPeter Rowlands 217eb13495 Add argument commit_time to gc/brancher and iter_revs
1. Add argument `commit_time` to `gc`/`brancher` and `iter_revs`
2. Add unit test for iter_revs.

Co-authored-by: Peter Rowlands (변기호) <[email protected]>
2022-07-12 13:53:46 +02:00
karajan1001andDave Berenbaum 20d1f7a87d gc: add a new flag --time (#678)
fix #678
1. Add a new flag `--time` to `dvc gc`.
2. Modify the unit test of `dvc gc`
3. Fix an argument checking error and update the error msg.

Co-authored-by: Dave Berenbaum <[email protected]>
2022-07-12 13:53:46 +02:00
karajan1001 9c59689aa7 Gc: Move old unittest gc tests to pytest 2022-07-12 13:53:46 +02:00
David de la Iglesia Castro d47e3c40b8 tests: limit printed durations to 50 2022-07-11 12:36:37 +03:00
Ruslan Kuprieiev d8be68436f deps: bump dvc-data to 0.0.23 2022-07-10 18:10:45 +03:00
Ruslan Kuprieiev f6adc49089 deps: bump dvc-data to 0.0.22 2022-07-10 17:05:26 +03:00
Saugat Pachhai (सौगात) a4c0ae9c73 deps: bump dvc-data, install dvc-data cli deps in dev mode 2022-07-10 18:37:38 +05:45
Ruslan Kuprieiev 8b3020aaf3 deps: bump dvc-data to 0.0.20 2022-07-08 21:37:38 +03:00
Alex Hall 182a22b8f6 checkout: use dvcignore
Fixes #7374
2022-07-07 17:20:30 +08:00
Alex Hall 892b235d0b metrics: support TOML files
Fixes #6402
2022-07-06 14:46:46 +02:00
dependabot[bot] da93e9a76c build(deps-dev): Bump pytest-mock from 3.8.1 to 3.8.2
Bumps [pytest-mock](https://github.com/pytest-dev/pytest-mock) from 3.8.1 to 3.8.2.
- [Release notes](https://github.com/pytest-dev/pytest-mock/releases)
- [Changelog](https://github.com/pytest-dev/pytest-mock/blob/main/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest-mock/compare/v3.8.1...v3.8.2)

---
updated-dependencies:
- dependency-name: pytest-mock
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-07-06 11:38:18 +02:00
Ruslan Kuprieiev bd93d85d47 deps: bump dvc-data 2022-07-05 21:29:34 +03:00
Ruslan Kuprieiev eed6a8483c data_cloud: remove logger check
Per https://github.com/iterative/dvc/pull/7961/files#r913635687
2022-07-05 13:22:23 +03:00
David de la Iglesia Castro 954de0cae4 api: params_show: Raise exception if no params found.
Fixes #7926
2022-07-05 09:18:22 +02:00
David de la Iglesia Castro 909941308b parsing: Support dict unpacking in cmd.
Allow to use dictionaries as values for template interpolation but only inside the `cmd` key.

See tests/func/parsing/test_interpolated_entry.py::test_cmd_dict for detailed syntax.

Add `config.parsing` section for configuring behavior of ambiguous data types
like booleans and lists.
2022-07-05 09:02:15 +02:00
Alex Hall c59f935cc5 Switch uses of %r to %s with quotes to avoid escaped backslashes in logs, especially in windows paths 2022-07-05 02:09:25 +03:00
Alex Hall 03b789e206 logger: use lazy formatting
Fixes #1843
2022-07-05 02:09:25 +03:00
pre-commit-ci[bot] cacc2f14cb [pre-commit.ci] pre-commit autoupdate
updates:
- [github.com/ambv/black: 22.3.0 → 22.6.0](https://github.com/ambv/black/compare/22.3.0...22.6.0)
2022-07-05 00:51:59 +03:00
Ruslan Kuprieiev 0d71194741 dvc: normalize targets before entering brancher
Fixes #7888
2022-07-04 16:34:49 +03:00
dependabot[bot] 683d22c42b build(deps): Bump dvc-data from 0.0.16 to 0.0.18
Bumps [dvc-data](https://github.com/iterative/dvc-data) from 0.0.16 to 0.0.18.
- [Release notes](https://github.com/iterative/dvc-data/releases)
- [Commits](https://github.com/iterative/dvc-data/compare/0.0.16...0.0.18)

---
updated-dependencies:
- dependency-name: dvc-data
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-07-04 14:02:40 +05:45
dberenbaum c687d1bf21 cli: help text for dvc update 2022-07-01 20:42:52 +02:00
Paweł Redzyński fbb98a87d1 plots: introduce flexible plots configuration to dvcfiles
Closes: #7086
2022-07-01 13:17:24 +02:00
Ruslan Kuprieiev f42beb4433 pyinstaller: add note about frozen version 2022-06-30 15:25:24 +03:00
David de la Iglesia Castro de8ab044f8 Downgrade pyinstaller
Per https://github.com/iterative/dvc/issues/7949#issuecomment-1170927010
2022-06-30 15:24:11 +03:00
skshetry 3c76885577 deps: remove setuptools_scm_git_archive
setuptools_scm can now work with git archives, so we don't need this plugin.
2022-06-30 17:00:24 +05:45
dependabot[bot] c347d9f84b build(deps-dev): Bump pytest-mock from 3.7.0 to 3.8.1
Bumps [pytest-mock](https://github.com/pytest-dev/pytest-mock) from 3.7.0 to 3.8.1.
- [Release notes](https://github.com/pytest-dev/pytest-mock/releases)
- [Changelog](https://github.com/pytest-dev/pytest-mock/blob/main/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest-mock/compare/v3.7.0...v3.8.1)

---
updated-dependencies:
- dependency-name: pytest-mock
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-06-30 12:20:05 +05:45
dependabot[bot] efc4787cb0 build(deps-dev): Bump pylint from 2.14.3 to 2.14.4
Bumps [pylint](https://github.com/PyCQA/pylint) from 2.14.3 to 2.14.4.
- [Release notes](https://github.com/PyCQA/pylint/releases)
- [Commits](https://github.com/PyCQA/pylint/compare/v2.14.3...v2.14.4)

---
updated-dependencies:
- dependency-name: pylint
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-06-30 11:09:05 +05:45
skshetry be3ec9dc59 deps: bump dvc-data to 0.0.16 2022-06-29 20:16:19 +05:45
dependabot[bot] 685a2d5579 build(deps): Bump styfle/cancel-workflow-action from 0.9.1 to 0.10.0
Bumps [styfle/cancel-workflow-action](https://github.com/styfle/cancel-workflow-action) from 0.9.1 to 0.10.0.
- [Release notes](https://github.com/styfle/cancel-workflow-action/releases)
- [Commits](https://github.com/styfle/cancel-workflow-action/compare/0.9.1...0.10.0)

---
updated-dependencies:
- dependency-name: styfle/cancel-workflow-action
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-06-28 09:15:05 +02:00
David de la Iglesia Castro c336507e51 render: image_converter: Support slash in revision.
Fixes #7934
2022-06-27 10:53:03 +02:00
Ruslan Kuprieiev d448eb5fc1 setup: bump dvc-data 2022-06-26 19:40:31 +03:00
skshetry 3dcd0107d2 deps: bump dvc-data to 0.0.13 2022-06-23 14:04:16 +05:45
dberenbaum 2773e99afc config: remove core.jobs dead code 2022-06-22 11:36:01 +08:00
Amey Kulkarni 9a1a3a05f5 Merge pull request #7671 from ap-kulkarni/amey/6141
s3fs: Adds support for SSE client keys
2022-06-22 00:54:10 +03:00
Ruslan Kuprieiev 286fab4aab setup: bump dvc-data to 0.0.12 2022-06-22 00:41:29 +03:00
David de la Iglesia Castro 20f69a121e api: Move to sub-package.
Split into sub-modules.

Split tests.
2022-06-21 20:52:19 +03:00
David de la Iglesia Castro b994c529a2 api: Add params_show.
Closes #6507

Uses `repo.params.show` with custom error_handler and postprocess the outputs for more user-friendly structure.

Extend `repo.params.show` to accept `stages` argument to cover the "params of current stage" use case.
2022-06-21 20:52:19 +03:00
David de la Iglesia Castro f106a68424 params.show: Fix deps for stages using same params file. 2022-06-21 20:52:19 +03:00
David de la Iglesia Castro 66c2e8cbd8 repo.collect: Add duplicates option.
Defaults to `False`.
If `True`, multiple `outs` sharing a provided `target_path` will not be filtered.
2022-06-21 20:52:19 +03:00
Yury 735b563ce4 dvc plots: allow for setting output directory via config
Fixes: #7816
2022-06-20 18:12:12 +02:00
Jorge Orpinel Perez 604e0178f7 readme: make VS Code installation into a separate section.
per https://github.com/iterative/dvc/pull/7916#pullrequestreview-1011575851
2022-06-20 16:10:38 +03:00
Jorge Orpinel Perez f210e41d5a readme: single QS, VSC gif in Install
per https://github.com/iterative/dvc/pull/7916#pullrequestreview-1011465782
and https://github.com/iterative/dvc/pull/7916#pullrequestreview-1011465820
2022-06-20 16:10:38 +03:00
Jorge Orpinel e07e79da52 readme: roll back non-vscode changes 2022-06-20 16:10:38 +03:00
Jorge Orpinel Perez 1284842f70 readme: fix link 2022-06-20 16:10:38 +03:00
Jorge Orpinel Perez 0aa063a1e7 readme: add VS Code Extension sction and gif 2022-06-20 16:10:38 +03:00
Jorge OrpinelandDave Berenbaum 87c5cb7ebf Update README.rst
Co-authored-by: Dave Berenbaum <[email protected]>
2022-06-20 16:10:38 +03:00
Jorge Orpinel Perez 59570c08a4 readme: add VS Code to Installation list + formatting 2022-06-20 16:10:38 +03:00
Jorge Orpinel Perez eafe686dd6 readme: Link current Quick start to Cmd Ref 2022-06-20 16:10:38 +03:00
Jorge Orpinel Perez d056d8a4c5 readme: blocks to link to DVC GS 2022-06-20 16:10:38 +03:00
Jorge Orpinel Perez 165d95be56 readme: intro updates (VSCE) 2022-06-20 16:10:38 +03:00
Ruslan Kuprieiev ea1c54f48e setup: bump dvc-data to 0.0.11 2022-06-20 11:55:50 +03:00
Peter Rowlands 31f67cd3de exp apply: preserve untracked files 2022-06-19 22:41:22 -07:00
Peter Rowlands ee87e2b260 scmrepo: bump to 0.0.25 2022-06-19 22:41:22 -07:00
dependabot[bot] ae61143956 build(deps-dev): Bump pylint from 2.14.2 to 2.14.3
Bumps [pylint](https://github.com/PyCQA/pylint) from 2.14.2 to 2.14.3.
- [Release notes](https://github.com/PyCQA/pylint/releases)
- [Commits](https://github.com/PyCQA/pylint/compare/v2.14.2...v2.14.3)

---
updated-dependencies:
- dependency-name: pylint
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-06-20 11:13:19 +05:45
Ruslan Kuprieiev 1253e6cc46 setup: bump dvc-data to 0.0.10 2022-06-19 21:16:08 +03:00
Ruslan Kuprieiev 19f2186c8b setup: bump dvc-data to 0.0.9 2022-06-18 22:34:25 +03:00
Ruslan Kuprieiev 2e21c92c4f dvc: use dvc-data 0.0.8 2022-06-17 22:08:33 +03:00
dberenbaum 4262e26a15 readme: consolidate intro 2022-06-17 10:22:42 +02:00
dependabot[bot] 830c116b4e build(deps-dev): Bump pylint from 2.14.1 to 2.14.2
Bumps [pylint](https://github.com/PyCQA/pylint) from 2.14.1 to 2.14.2.
- [Release notes](https://github.com/PyCQA/pylint/releases)
- [Commits](https://github.com/PyCQA/pylint/compare/v2.14.1...v2.14.2)

---
updated-dependencies:
- dependency-name: pylint
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-06-16 10:32:09 +05:45
David de la Iglesia CastroandPeter Rowlands 1663b97eaa api: open: Raise ValueError if rev is used in wrong mode.
Closes #7405

Co-authored-by: Peter Rowlands (변기호) <[email protected]>
2022-06-15 18:19:27 +02:00
David de la Iglesia Castro 15e10a1d81 api: open: Add docstring and type hints. 2022-06-15 18:19:27 +02:00
Saugat Pachhai (सौगात) 4bc6b5699a quote node names 2022-06-15 12:43:45 +03:00
dependabot[bot] 8e003e5022 build(deps): Update networkx requirement
Updates the requirements on [networkx](https://github.com/networkx/networkx) to permit the latest version.
- [Release notes](https://github.com/networkx/networkx/releases)
- [Commits](https://github.com/networkx/networkx/compare/networkx-2.5...networkx-2.8.4)

---
updated-dependencies:
- dependency-name: networkx
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-06-15 12:43:45 +03:00
Saugat Pachhai (सौगात) af649af462 deps: bump dvc-data to 0.0.6; fix imports 2022-06-14 17:50:57 +05:45
dependabot[bot] 957d8d179b build(deps): Bump dvc-render from 0.0.5 to 0.0.6
Bumps [dvc-render](https://github.com/iterative/dvc-render) from 0.0.5 to 0.0.6.
- [Release notes](https://github.com/iterative/dvc-render/releases)
- [Commits](https://github.com/iterative/dvc-render/compare/v0.0.5...0.0.6)

---
updated-dependencies:
- dependency-name: dvc-render
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-06-14 08:36:27 +05:45
dberenbaum e7b265a178 readme: change vscode to vs code 2022-06-14 00:17:59 +03:00
dberenbaum 422511f66d readme: mention vs code extension 2022-06-14 00:17:59 +03:00
pre-commit-ci[bot] 6826d8ac35 [pre-commit.ci] pre-commit autoupdate
updates:
- [github.com/pre-commit/pre-commit-hooks: v4.2.0 → v4.3.0](https://github.com/pre-commit/pre-commit-hooks/compare/v4.2.0...v4.3.0)
2022-06-14 00:08:50 +03:00
dependabot[bot] bdea9847b5 build(deps-dev): Bump pylint from 2.13.9 to 2.14.1
Bumps [pylint](https://github.com/PyCQA/pylint) from 2.13.9 to 2.14.1.
- [Release notes](https://github.com/PyCQA/pylint/releases)
- [Commits](https://github.com/PyCQA/pylint/compare/v2.13.9...v2.14.1)

---
updated-dependencies:
- dependency-name: pylint
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-06-13 22:15:27 +05:45
Saugat Pachhai (सौगात) 8e6ea87b76 typing: executor: use queue.Queue instead of multiprocessing.Queue 2022-06-13 21:41:54 +05:45
dependabot[bot] 036ac8e7c2 build(deps-dev): Bump mypy from 0.942 to 0.961
Bumps [mypy](https://github.com/python/mypy) from 0.942 to 0.961.
- [Release notes](https://github.com/python/mypy/releases)
- [Commits](https://github.com/python/mypy/compare/v0.942...v0.961)

---
updated-dependencies:
- dependency-name: mypy
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-06-13 21:41:54 +05:45
dependabot[bot] 3306d2789b build(deps-dev): Bump filelock from 3.7.0 to 3.7.1
Bumps [filelock](https://github.com/tox-dev/py-filelock) from 3.7.0 to 3.7.1.
- [Release notes](https://github.com/tox-dev/py-filelock/releases)
- [Changelog](https://github.com/tox-dev/py-filelock/blob/main/docs/changelog.rst)
- [Commits](https://github.com/tox-dev/py-filelock/compare/3.7.0...3.7.1)

---
updated-dependencies:
- dependency-name: filelock
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-06-13 20:39:12 +05:45
dependabot[bot] b094839210 build(deps): Bump actions/setup-python from 3 to 4
Bumps [actions/setup-python](https://github.com/actions/setup-python) from 3 to 4.
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](https://github.com/actions/setup-python/compare/v3...v4)

---
updated-dependencies:
- dependency-name: actions/setup-python
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-06-13 20:28:51 +05:45
Ruslan Kuprieiev b9c04a247a dvc: upgrade to dvc-data 0.0.5 2022-06-13 18:03:53 +05:45
Ruslan Kuprieiev ef689c5593 dvc: upgrade to dvc-objects 0.0.4 2022-06-13 18:03:53 +05:45
Saugat Pachhai (सौगात) 7b16a377e5 deps: bump dvc-data to 0.0.3 2022-06-13 18:03:53 +05:45
Daniele Trifirò 793f97bdd5 fix dvc-objects/data imports 2022-06-13 18:03:53 +05:45
Saugat Pachhai (सौगात) d30dbd50bc run-cache: http: stage cache uploads in http remotes
Currently, there is no way to find run-cache in HTTP remotes.
In the future, we could use directory-listings from supported
webservers to find files.
Temporarily, we are restricting the run-cache uploads. This is a bit
strict, we could have only restricted the downloads, but it might be
more confusing to the users, so I went to categorically restrict
stage cache uploads and downloads for http filesystems.
2022-06-12 13:49:56 +03:00
Saugat Pachhai (सौगात) e6db6ffc89 runcache: fix push from Windows to remote filesystems
We were passing paths with '\\' in the filename instead of posix paths to
remote filesystems which was causing failures to upload.
Although in some filesystems, this was failing silently, so upload would seem
to have passed, but the download later would fail.
2022-06-11 11:34:12 +03:00
Ruslan Kuprieiev 9ac2f49b57 Revert "fix dvc-objects/data imports"
This reverts commit 677da2b22c.
2022-06-10 12:01:07 +03:00
Ruslan Kuprieiev 9b2adfd3cc Revert "deps: bump dvc-data to 0.0.3"
This reverts commit 6dd3f1e053.
2022-06-10 12:01:07 +03:00
Saugat Pachhai (सौगात) 6dd3f1e053 deps: bump dvc-data to 0.0.3 2022-06-10 14:07:33 +05:45
Daniele Trifirò 677da2b22c fix dvc-objects/data imports 2022-06-10 14:07:33 +05:45
dberenbaum a3ee993739 remove .github/FUNDING.yml 2022-06-09 08:32:41 +05:45
dberenbaum 95f67445de readme: remove donate requests 2022-06-09 08:32:41 +05:45
Peter Rowlands c9a3cb803c sshfs: bump min ver to 2022.6.0 2022-06-07 05:17:08 -07:00
Daniele Trifirò 41ecd2e204 scm: fix clone
`fetch_all_exp()` in `clone()` was called with `url="origin"`, which
resulted in the operation being performed with the remote URL defined
in the cloned repo's config, which did not include any credentials
initially provided to clone.

Fixes #7670
2022-06-07 05:11:05 -07:00
dberenbaum 33b3afa2f5 exp init: create output dirs 2022-06-07 17:55:24 +05:45
Daniele Trifirò e849162018 exp: speed up repro execution with untracked directories in workspace
When large untracked directories are present in the workspace, a lot of
time is spent collecting untracked files in `scm.status` and `scm.is_dirty`.
2022-06-07 04:43:35 -07:00
Yury c14f96391a checkout: --relink show helpful message on completion 2022-06-07 00:31:42 +02:00
dependabot[bot] 88d3582d40 build(deps): Bump pre-commit/action from 2.0.3 to 3.0.0
Bumps [pre-commit/action](https://github.com/pre-commit/action) from 2.0.3 to 3.0.0.
- [Release notes](https://github.com/pre-commit/action/releases)
- [Commits](https://github.com/pre-commit/action/compare/v2.0.3...v3.0.0)

---
updated-dependencies:
- dependency-name: pre-commit/action
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-06-06 04:20:08 -07:00
Ruslan Kuprieiev 8fa0e40669 setup: set upper bound on networkx 2022-06-06 13:31:59 +03:00
Ruslan Kuprieiev a3d6b1299a brancher: use scm.root_dir to determine relative cwd
Fixes #7776
2022-06-06 12:42:22 +03:00
Paweł Redzyński 20c7b0e3e6 plots: grouping: stop using dpath.util.search 2022-06-03 16:48:33 +03:00
huang06 6794dd28f7 docs: update package installation 2022-06-02 17:46:14 +08:00
Peter Rowlands 1cc803d12b exp: output troubleshooting link on shallow merge failure 2022-06-02 01:15:16 -07:00
Ruslan Kuprieiev 2b6aa01392 setup: bump scmrepo to 0.0.24
Fixes #7824
2022-06-01 20:51:08 +03:00
Daniele Trifirò 906c87fdef tests: replace unecessary map() call in test_live
caught by flake8
2022-06-01 20:41:14 +03:00
Daniele Trifirò 52f02d238d bump scmrepo to 0.0.23
`scmrepo==0.0.23` includes proper support for windows file:// URLs
(https://github.com/iterative/scmrepo/pull/68), so Windows tests
relying on file URLs had to be fixed in order to be valid
[RFC 8089](https://datatracker.ietf.org/doc/html/rfc8089) URLs.
2022-06-01 09:20:07 +05:45
David de la Iglesia Castro 3d791778de plots: Pass templates_dir to match_renderers.
We were forgetting to pass default template dir.

Fixes #7817.
2022-05-31 16:17:58 +02:00
Saugat Pachhai (सौगात) 1e77be3ae3 testing: use shutil.copytree with dirs_exist_ok
See https://docs.python.org/3/library/shutil.html#shutil.copytree.
There is dirs_exist_ok kwarg in Python >3.8.
2022-05-30 20:40:31 +05:45
Ruslan Kuprieiev 844f77b4f9 dvc: drop python 3.7
Also upgraded with `pyupgrade --py38-plus`

Fixes #7708
2022-05-30 16:51:35 +03:00
David de la Iglesia Castro 34ef1807be exp: show: Include additional info in --json.
Use relpath to repo.root_dir as keys in deps and outs.
Add `use_cache` and `is_data_source` for outs.

This allows to differentiate git-tracked dependencies and
intermediate outputs.

Closes #7575
Closes #7790
2022-05-25 09:01:39 +02:00
Dave Berenbaum dae0000bcd exp list: fix git_remote metavar 2022-05-24 18:47:26 -07:00
David de la Iglesia Castro 109d0e4e28 dag: mermaid: Use quotation marks to escape node name.
Fixes #7731
2022-05-24 18:27:58 +02:00
Saugat Pachhai (सौगात) 68b0d61c9e tests: move run cache test to test_remote 2022-05-24 10:16:37 +05:45
Saugat Pachhai (सौगात) 942a080567 dvc.stage.cache: fix typo, was using src filesystem to transfer
This was working for LocalFileSystem as they work for any directories/path.
It's hard to test this these days, as we don't have remote tests inside
dvc, so it was not caught.

Potentially fixes #7718.
2022-05-23 16:37:40 +03:00
Saugat Pachhai (सौगात) 60cbcec399 formatting: consider dvc-render as a known first party for ordering imports 2022-05-23 15:49:47 +05:45
Saugat Pachhai (सौगात) 0c5a18513c fix linter issue 2022-05-23 14:12:54 +05:45
Alexander Schepanovski b5c28dd9f9 Catch correct exception class in params.show() 2022-05-23 00:34:34 -07:00
dependabot[bot] 84439e6a04 build(deps): Bump dvc-data from 0.0.1 to 0.0.2
Bumps [dvc-data](https://github.com/iterative/dvc-data) from 0.0.1 to 0.0.2.
- [Release notes](https://github.com/iterative/dvc-data/releases)
- [Commits](https://github.com/iterative/dvc-data/compare/0.0.1...0.0.2)

---
updated-dependencies:
- dependency-name: dvc-data
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-05-21 20:46:41 +05:45
Saugat Pachhai (सौगात) 75fa487406 dvc: remove unused utils and redundant tests
The tests should be in dvc-objects repo npw, and will be migrated soon.
The nanotime and diskcache are specified in dvc-objects, so we don't need
those here.
2022-05-20 19:17:00 +05:45
Saugat Pachhai (सौगात) 0ecd47b333 deps: remove jaraco.windows dependency
This is used by dvc-objects, and it has the dependency declared.
2022-05-20 15:18:13 +05:45
Saugat Pachhai (सौगात) 9710cafd38 deps: add dvc-objects dependency 2022-05-20 15:13:50 +05:45
Saugat Pachhai (सौगात) e34767ca90 logging: show logs from dvc-data 2022-05-20 15:13:50 +05:45
Saugat Pachhai (सौगात) 9a2feaa4ed dvc: remove dvc.data, fix imports 2022-05-20 15:13:50 +05:45
Saugat Pachhai (सौगात) 7bc98e3fb3 tests: remove objects related tests 2022-05-20 14:02:08 +05:45
Saugat Pachhai (सौगात) 5e561c1dfd deps: add dvc-objects as a dependency 2022-05-20 14:02:08 +05:45
Saugat Pachhai (सौगात) 572b6dfca9 logging: show logs from dvc-objects 2022-05-20 14:02:08 +05:45
Saugat Pachhai (सौगात) 37921d618d dvc: remove dvc.objects, fix imports 2022-05-20 14:02:08 +05:45
Saugat Pachhai (सौगात) 95c6cea36d tests: restructure some tests for objects/data 2022-05-19 18:38:21 +05:45
Saugat Pachhai (सौगात) 455260b29c data/objects: reduce log levels in dvc-objects and dvc-data
Also introduces a `validate_status` kwarg in `data.transfer`,
which is used in dvc to log for missing version info.
2022-05-19 18:33:39 +05:45
Saugat Pachhai (सौगात) 82dc67d890 objects: use separate Tqdm implementations
Now dvc.objects and dvc.data uses the implementation from dvc.objects
for Tqdm progress bars. This is temporary. :)
2022-05-19 18:07:47 +05:45
Saugat Pachhai (सौगात) 2057c471bb data.checkout: remove dependency on DVC; prompts and DvcException 2022-05-19 15:11:27 +03:00
Saugat Pachhai (सौगात) f23d31af64 fs/data: move repo related utils to dvc
This moves get_fs_config/get_fs_cloud and ODBManager to DVC
as they require DVC related utilities, and we don't need them
strictly in dvc-objects/dvc-data.
This also adds support to ReferenceHashFile to load from
any filesystem, using it's module name and filename.
Now we can get rid of DVCFileSystem dependency in
ReferenceHashFile.
This is a temporary solution, we really need a registry.
(I am not quite sure if this works in pyinstaller mode,
but I think it should, it's how fsspec does it if I understand
correctly.)
2022-05-18 19:39:09 +03:00
Saugat Pachhai (सौगात) cf5d3830c5 dvc.objects: use own internal error instead of DvcException
transfer raises internal TransferError, merge raises internal MergeError
and local ODB raises ODBError on unprotect.
transfer's error is reraised to FileTransferError back in DataCloud.
2022-05-18 12:22:57 +03:00
Saugat Pachhai (सौगात) 32cd6c2c03 dvc.objects: use stub ignore in dvc.objects/dvc.data
This commit:
* defines a `Ignore` protocol in `dvc.objects`, that expects a `find` method.
  This will be used in dvc-data and dvc-objects instead of depending on dvc.ignore.
  dvcignore is expected to respect this protocol, which it does.
* renames `dvcignore` kwarg to `ignore` in `dvc-data` and `dvc-objects`.
* teaches dvc.cli that `IgnoreInCollectedError` is a known exception
   and is logged correctly and adds a test for the behaviour.

I am not happy that we need to hardcode `.dvcignore` in dvc-data
but I don't see any easy way, since we always try to avoid
staging if the tree contains .dvcignore file, even if .dvcignore
is not passed.
2022-05-18 12:22:28 +03:00
Saugat Pachhai (सौगात) 54917e3255 dvc.objects: fix typing imports 2022-05-18 11:49:45 +05:45
dependabot[bot] e8a439df8d build(deps): Bump pyinstaller from 5.0 to 5.1
Bumps [pyinstaller](https://github.com/pyinstaller/pyinstaller) from 5.0 to 5.1.
- [Release notes](https://github.com/pyinstaller/pyinstaller/releases)
- [Changelog](https://github.com/pyinstaller/pyinstaller/blob/develop/doc/CHANGES.rst)
- [Commits](https://github.com/pyinstaller/pyinstaller/compare/v5.0...v5.1)

---
updated-dependencies:
- dependency-name: pyinstaller
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-05-17 20:15:17 -07:00
Ruslan Kuprieiev 71a4b4823a fs: path: don't overuse parts
These days we have `self.flavour` that is more efficient and more simple.
2022-05-17 22:29:34 +03:00
Ruslan Kuprieiev 01cc97f38a fs: path: use flavour.basename 2022-05-17 20:21:46 +03:00
Saugat Pachhai (सौगात) 3872f79dad objects.fs: do not use format_link, DvcException and fix_env from DVC
* Introduce ConfigError and AuthError in dvc.objects.fs and raise it
  instead of dvc.config.ConfigError.
* Provide hints and links by catching those errors in dvc.cli.main,
  i.e decouple UI messages from filesystems for AuthError and
  ConfigError.
* Copy flatten/unflatten utils to dvc.objects.fs.utils.
2022-05-17 18:23:29 +03:00
Saugat Pachhai (सौगात) 48176b80f6 fs: do not use DvcException in filesystems
* Refactor check_requires, move UI messages to dvc.cli
* Refactor link related error
2022-05-17 16:48:38 +03:00
Saugat Pachhai (सौगात) 8c9a9e9a1f objects.fs: move schemes to objects.fs 2022-05-17 17:02:14 +05:45
Saugat Pachhai (सौगात) 120eb09c4d fs: move GitFileSystem out of dvc.objects.fs
This is more of a DVC thing than objects.
2022-05-17 16:50:33 +05:45
Saugat Pachhai (सौगात) bf7892012d objects.fs: copy executors to dvc.objects 2022-05-17 16:50:21 +05:45
Saugat Pachhai (सौगात) 36605eea4c objects.hash: rename HashedStreamReader to HashStreamFile 2022-05-17 13:25:38 +03:00
Saugat Pachhai (सौगात) 01e5f9eadd objects.hash: use fobj.read instead of read1 2022-05-17 13:25:38 +03:00
Saugat Pachhai (सौगात) 752e10a834 dvc.objects: move HashedStreamReader to objects, use it for calculating fobj_md5
Now HashedStreamReader will be used to calculate md5 in fobj_md5/hash_file.

Also:
* adds in `bytes_md5` that may be useful for testing.
* adds a hasher-registry with hashlib
* adds a `text=` kwarg to be able to specify to use dos2unix or not
  (useful for testing)
* makes `localfs` the default filesystem when `fs` arg is not passed
  (makes it easier to test in the REPL)
2022-05-17 13:25:38 +03:00
Saugat Pachhai (सौगात) 092eda183c objects.fs: use getpass for prompts
Note that this will change the behaviour of DVC to always show
prompt even in --quiet mode, which is what we need.
Previously it'd prompt without any message.
2022-05-17 16:06:27 +05:45
Saugat Pachhai (सौगात) d82e094b13 fs: move filesystems to dvc.objects.fs.implementations 2022-05-16 17:54:57 +03:00
Saugat Pachhai (सौगात) 570e3a5359 dvc.fs: move fs to dvc.objects.fs
Some of the APIs/FileSystems are reimported inside dvc.fs module.
2022-05-16 13:15:19 +03:00
Saugat Pachhai (सौगात) b8e770747f fs.utils: copy dvc.utils.fs to dvc.fs.utils 2022-05-16 11:51:48 +05:45
dependabot[bot] 1999ecf0d3 build(deps-dev): Bump pylint from 2.13.8 to 2.13.9
Bumps [pylint](https://github.com/PyCQA/pylint) from 2.13.8 to 2.13.9.
- [Release notes](https://github.com/PyCQA/pylint/releases)
- [Changelog](https://github.com/PyCQA/pylint/blob/main/ChangeLog)
- [Commits](https://github.com/PyCQA/pylint/compare/v2.13.8...v2.13.9)

---
updated-dependencies:
- dependency-name: pylint
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-05-16 08:54:42 +05:45
dependabot[bot] 1ff5f30839 build(deps-dev): Bump filelock from 3.6.0 to 3.7.0
Bumps [filelock](https://github.com/tox-dev/py-filelock) from 3.6.0 to 3.7.0.
- [Release notes](https://github.com/tox-dev/py-filelock/releases)
- [Changelog](https://github.com/tox-dev/py-filelock/blob/main/docs/changelog.rst)
- [Commits](https://github.com/tox-dev/py-filelock/compare/3.6.0...3.7.0)

---
updated-dependencies:
- dependency-name: filelock
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-05-15 19:57:31 -07:00
Saugat Pachhai (सौगात) c6ae91c907 dvc.fs: fix iscopy 2022-05-16 08:25:23 +05:45
Saugat Pachhai (सौगात) dc1d3e880a dvc.objects.cache: set type in a more compatible way
It turns out that diskcache.Disk saves passed arguments to the database
and uses that all the time. So this means that we are not forward
compatible as it breaks moving from newer version of DVC to an older
one. We don't promise this, but this breaks our benchmarks which
are probably not isolated enough.

Regarding the use of cache, it is a bit iffy to extend it this way.
We only need this type for error messages. We could consider removing
this, but since the error message is documented and it's not too hard
to extend this :), I decided to preserve the message.
2022-05-13 11:00:31 +05:45
Saugat Pachhai (सौगात) 3f5757a0a5 dvc.objects: move hashing functions to dvc.objects
This commit moves `HashedStreamReader`/`get_hash_file`/`file_md5`
into `dvc.objects.hash`.

The `get_hash_file` has been renamed to `hash_file`.
This also copies `relpath` and `is_exec` to the `dvc.fs.utils`.
2022-05-12 20:33:18 +03:00
Daniele Trifirò 7a795f79db dvc.data: save and try loading raw dir objects
When staging a directory, always save a "raw dir object" to the odb.
If the corresponding ".dir" object has not been added to the odb,
`stage()` calls can load the tree from the raw dir object instead of
rebuilding it by walking the directory.

This can lead to significant speed improvements when calling
`dvc status` for modified directories.

Fixes #7390
2022-05-12 19:27:36 +03:00
skshetry b3fb0dfdad dvc.objects: extend diskcache to handle pickle errors (#7734)
dvc.objects: extend diskcache to handle pickle errors
2022-05-12 21:12:33 +05:45
Saugat Pachhai (सौगात) ee29888e18 dvc.objects: move get_mtime_and_size to dvc.objects.utils 2022-05-12 18:02:42 +03:00
Saugat Pachhai (सौगात) 11eaa87849 add typings to istextfile and system
Also moves umask to dvc.fs.system
2022-05-12 18:02:42 +03:00
Saugat Pachhai (सौगात) b4faa5616f system: change System class to a dvc.fs.system module 2022-05-12 18:02:42 +03:00
Saugat Pachhai (सौगात) 4d6df989f2 dvc.objects: change imports to relative 2022-05-12 18:02:42 +03:00
Saugat Pachhai (सौगात) e585c52187 istextfile: move to dvc.objects 2022-05-12 18:02:42 +03:00
Saugat Pachhai (सौगात) 4add88f627 objects: move System to dvc.fs 2022-05-12 18:02:42 +03:00
Saugat Pachhai (सौगात) aac2fc0ca0 dvc.fs: rename fs.utils to fs.generic
In the spirit of fsspec.generic, it is for cross-filesystem operations.
Trying to avoid `fs.utils` as much as possible, but we have some
functions that are really utilities coming, so I am making a place
for them. :)
2022-05-12 18:02:15 +03:00
Ruslan Kuprieiev 005d56eedf fs: rename RepoFileSystem to DvcFileSystem 2022-05-12 00:39:41 +03:00
Ruslan Kuprieiev b6d25825c8 fs: rename DvcFileSystem to DataFileSystem
Current naming for `DvcFileSystem` and `RepoFileSystem` is confusing, because
dvc is not only about data and it is much more natural to expect something
named `dvcfs` to include complete view for your whole repo (including git
files), which is what `repofs` is doing right now.

`DvcFileSystem` can provide a view not only for the repo data, but also for
external data (e.g. local external outputs). So it makes more sense to call
it a `DataFileSystem`, since it really represents the data management side
of dvc.
2022-05-11 21:49:57 +03:00
dberenbaum 799dca8b67 update value prop in readme 2022-05-11 19:52:11 +03:00
Karthikeyan SingaravelanandDavid de la Iglesia Castro 3faf413288 Use sorted output in test since order is not deterministic.
Co-authored-by: David de la Iglesia Castro <[email protected]>
2022-05-11 18:40:21 +03:00
Karthikeyan Singaravelan a3261637de dag: fix dot file rendering order. 2022-05-11 18:40:21 +03:00
Karthikeyan Singaravelan b8d738220d Revert other tests and test only glob exception. 2022-05-11 18:37:09 +03:00
pre-commit-ci[bot] fb36db450f [pre-commit.ci] auto fixes from pre-commit.com hooks
for more information, see https://pre-commit.ci
2022-05-11 18:37:09 +03:00
Karthikeyan SingaravelanandDavid de la Iglesia Castro 946ceb288d Update tests/func/test_data_cloud.py
Co-authored-by: David de la Iglesia Castro <[email protected]>
2022-05-11 18:37:09 +03:00
Karthikeyan Singaravelan 8d99ce06aa Move test to test_data_cloud. 2022-05-11 18:37:09 +03:00
Karthikeyan Singaravelan 9b3873c4f0 Move exception raising to glob_targets to cover all commands. 2022-05-11 18:37:09 +03:00
Karthikeyan Singaravelan e177f041c8 Fail on sync when there is no match for glob. 2022-05-11 18:37:09 +03:00
Ruslan Kuprieiev a80a85e6bd dvc: detach gitfs from local paths
Our gitfs paths are currently tied to the local path in which the cloned
repository resides in, which results in a lot of hacky assumptions throughout
the code.

This PR detaches gitfs from local paths completely, making dvc work with a
proper fsspec gitfs implementation.

Part of #7543
2022-05-11 18:17:39 +03:00
Saugat Pachhai (सौगात) 14c9348f93 dvc.objects: move hash_info, state and meta into dvc.objects 2022-05-11 17:35:48 +03:00
karajan1001 7a1f133f29 dvc ls: not raise PathMissingError on empty dir.
fix #5841
2022-05-11 16:38:58 +03:00
Gao 45a01c6a30 Revert "dvc ls: not raise PathMissingError on empty dir."
This reverts commit 09afd2a0cd.
2022-05-11 14:54:13 +03:00
karajan1001 09afd2a0cd dvc ls: not raise PathMissingError on empty dir.
fix #5841
2022-05-11 11:24:32 +03:00
Saugat Pachhai (सौगात) d92c6fed67 fs.callbacks: simplify, ensure None does not break them, lazy richcallbacks 2022-05-10 20:37:21 +05:45
Saugat Pachhai (सौगात) f10dbef0cf TqdmCallback: minor fixup, check for None explicitly
Tqdm supports __bool__, so we should really use `is not None` test
rather than boolean check. This is not used anywhere right now, but
I'd prefer being correct.
2022-05-10 14:22:13 +05:45
Saugat Pachhai (सौगात) 8fb2f65d4b TqdmCallback: make it lazy 2022-05-10 13:41:54 +05:45
dberenbaum 477f266dc5 exp init: fixes #7534; simplifies/updates exp init --live 2022-05-09 20:58:27 +05:45
Ruslan Kuprieiev b14a972cd0 repofs: use / as root_marker
This makes dvcfs/repofs much easier to work with and allows it to support
isabs/abspath/etc correctly, as previously any full path (with root_marker "")
would be impossible to distinguish from a relative one.

This also detaches external workspaces from the main repo workspace in
DvcFileSystem, which was necessary to be able to distinguish dvcfs abspaths
from local external output paths. Note that currently we still have limited
support for those (e.g. get/api supports them, but import doesn't) and this
change keeps it that way.
2022-05-08 17:19:53 +03:00
Saugat Pachhai (सौगात) 562e61235b objects: do not inherit from DvcException 2022-05-06 13:24:41 +03:00
David de la Iglesia Castro 9bd9ac4a37 FileSystem: Handle encoding via kwargs.
Drop if None.

Closes #7691
2022-05-06 02:34:38 +03:00
Saugat Pachhai (सौगात) f89f4ac152 fs.put: introduce non-recursive put 2022-05-05 21:22:29 +03:00
Saugat Pachhai (सौगात) 54dd3ae90c fs.get: use async implementation when supported by the filesystem 2022-05-05 14:15:21 +03:00
dberenbaum 35d2963069 repro/run/stage: reorder options 2022-05-05 16:42:29 +08:00
Samuel Knight 1f5f2f5c97 dvcfile: preserve 'remote' on add and commit
Preserves 'remote' output on dvc add and dvc commit.

Fixes #7356
2022-05-05 08:36:37 +05:45
Saugat Pachhai (सौगात) c64db917f5 fs: add more fsspec methods 2022-05-05 08:16:34 +05:45
Paweł Redzyński 9d476aab8b plots: image converter return absolute paths 2022-05-04 10:57:13 +02:00
Saugat Pachhai (सौगात) 5067e1f5bc fs.utils.transfer: remove tqdm progress bars 2022-05-03 15:15:48 +05:45
Saugat Pachhai (सौगात) 8a0c5680e0 fs: remove download 2022-05-03 14:42:19 +05:45
Saugat Pachhai (सौगात) 61699d1d66 fs: remove upload function 2022-05-03 11:22:21 +05:45
dependabot[bot] 94c776182e build(deps-dev): Bump pytest from 7.1.1 to 7.1.2
Bumps [pytest](https://github.com/pytest-dev/pytest) from 7.1.1 to 7.1.2.
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest/compare/7.1.1...7.1.2)

---
updated-dependencies:
- dependency-name: pytest
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-05-03 10:18:39 +05:45
dependabot[bot] e3d3500db8 build(deps-dev): Bump pylint from 2.13.7 to 2.13.8
Bumps [pylint](https://github.com/PyCQA/pylint) from 2.13.7 to 2.13.8.
- [Release notes](https://github.com/PyCQA/pylint/releases)
- [Changelog](https://github.com/PyCQA/pylint/blob/main/ChangeLog)
- [Commits](https://github.com/PyCQA/pylint/compare/v2.13.7...v2.13.8)

---
updated-dependencies:
- dependency-name: pylint
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-05-03 09:48:49 +05:45
Saugat Pachhai (सौगात) d0e05c4b66 deps: bump s3fs to 2022.02.0
The callbacks on _get_file/_put_file was only supported on >2022.02.0.
Fixes #7669.
2022-05-02 12:57:00 +03:00
Ruslan Kuprieiev 58d960a47c Revert "fs.utils: add upload that can be conditionally atomic"
This reverts commit dd187df667.
2022-04-30 17:34:39 +03:00
Saugat Pachhai (सौगात) dd187df667 fs.utils: add upload that can be conditionally atomic
The PR also makes odb.add operations atomic, but the checkout is still
not atomic.
2022-04-29 23:02:15 +03:00
Saugat Pachhai (सौगात) b71ea349d2 repofs: only use dvcfs when --dvc-only is specified 2022-04-29 12:03:46 +03:00
karajan1001 c81d841fd7 exp pull/push: better result handling in exp sharing(#7448)
fix: #7448
Current we skip on those experiments which already existed on both sides, but
do not exclude them from the result list. And if we have diverged experiment,
pulling/pushing them will stop the current progress and raise an exception, but
didn't give any information on the condition of other experiments.

1. Change the exp pull and push to match the new API in `scmrepo`.
2. Handle sync status after `exp pull/push` finished.
3. Bump scmrepo to 0.0.19

Co-authored-by:
2022-04-28 19:56:15 +08:00
Saugat Pachhai (सौगात) 127a9c74b2 fs.put_file: fix function signature for size 2022-04-28 15:54:40 +05:45
Saugat Pachhai (सौगात) e30d2fdda5 fs.put_file: don't require size to be passed 2022-04-28 15:31:28 +05:45
Saugat Pachhai (सौगात) ae4f56c5ad fs.put_file: don't require size to be passed 2022-04-28 15:31:28 +05:45
Ruslan Kuprieiev 8cdcf9b8bb utils: remove PathStringTrie 2022-04-27 22:40:38 +03:00
Ruslan Kuprieiev 55a4532f1d ignore: use Trie instead of PathStringTrie 2022-04-27 22:40:38 +03:00
Ruslan Kuprieiev 43b9cab01b repofs: use Trie instead of PathStringTrie 2022-04-27 22:40:38 +03:00
Saugat Pachhai (सौगात) 36d53bd403 dvc.stage: log time duration on stage collection walk in verbose mode 2022-04-27 18:04:14 +03:00
Saugat Pachhai (सौगात) 46fac33ba5 fs: remove unused CHUNK_SIZE var
There is no support for chunk_size kwarg in fs.open.
Also, `upload_fobj` is now able to figure out proper
chunk size from fileobj, so I don't think we need this on _upload_file.
2022-04-27 19:06:46 +05:45
David de la Iglesia Castro 8b68e4fa75 bump dvclive 0.7.3 2022-04-27 18:06:53 +05:45
Saugat Pachhai (सौगात) 4f1fdf0b0c fs.ossfs: remove unused var COPY_POLL_SECONDS 2022-04-27 18:06:24 +05:45
Saugat Pachhai (सौगात) 0d48598e4b fs.ssh: remove unused vars 2022-04-27 17:56:08 +05:45
Saugat Pachhai (सौगात) 5d64f6504f fs.s3: remove custom put_file/get_file 2022-04-27 17:53:17 +05:45
Saugat Pachhai (सौगात) 3d54039614 scm: fix progress bar, show progress and repo being cloned
Before, as we were not passing `total`, the Tqdm progress bar would not
show the bar or not show any progress on the bar. As we get that value lazily,
we should force it to always show the bar.
Also updated the progress bar to say which repo is being cloned.
2022-04-27 16:42:28 +05:45
Saugat Pachhai (सौगात) cda855b97a fs: add cat/cat_file/cat_ranges/pipe/pipe_file/touch methods 2022-04-27 15:57:17 +05:45
David de la Iglesia Castro bea7d56bd5 plots: Fix repo with removed plots
Changes in dvc-render 0.0.5 caused error.
2022-04-27 11:53:30 +02:00
Paweł Redzyński 10bcc9971d plots: tests: integration tests for studio
Related: #7549
2022-04-26 21:32:56 +02:00
Paweł Redzyński 700b648da9 plots: tests: integration test for vscode
Closes: #7549
2022-04-26 21:32:56 +02:00
Saugat Pachhai (सौगात) f84f9cf184 fs: do not pass size to underlying fs.put_file 2022-04-26 18:37:17 +05:45
Saugat Pachhai (सौगात) b53ebc1a5e build: try fixing building package 2022-04-26 17:28:36 +05:45
Saugat Pachhai (सौगात) 31e8eed402 fsspec.callbacks: add rich based callbacks
We have some issues, so we cannot enable them just yet, but will
be good to merge this so that we can play with it.
2022-04-26 12:28:32 +05:45
Saugat Pachhai (सौगात) 112ea1d448 dvc.objects: add callbacks for listing and estimating hashes
This PR gets rid of Tqdm progress bars inside `dvc.objects`.
Those are replaced with multi-phase callback in `hashes_exist`, and
simple callable that takes `completed` value in
`odb._estimate_remote_size()`.

The `odb.list_hashes_exists()` and `odb.all()` now return iterables,
hence the caller has the responsibility of handling progress.

This is now handled in `dvc.data` by using a custom `Tqdm` progressbar.
This is ugly and is temporary, but my motivation is to remove tqdm from dvc.objects
first. We can gradually get rid of these from `dvc.data` too, but
that requires more knowledge about `dvc.data` and involves more
design work. All in time, I guess. :)
2022-04-26 07:38:24 +05:45
Saugat Pachhai (सौगात) f39e35445a fs.upload/download: simplify, remove unused kwargs, callbacks
1. This PR simplifies `fs.upload`/`fs.download`/`fs.download_file`.
2. Removes unused kwargs.
3. `download` uses `dvc.utils.threadpool.ThreadPoolExecutor` which
   supports canceling futures.
4. `download` for directories supports nested/branched callbacks
   and progress bars.
2022-04-26 06:57:10 +05:45
Paweł Redzyński 7211bd02ed fsspec wrapper: remove can handle dirs 2022-04-25 19:48:20 +03:00
Saugat Pachhai (सौगात) 83795ff3df fs.put_file: add support for uploading fileobjects
Also changed the callbacks to inherit from our own so that we can
add few more utilities to it.
2022-04-25 21:23:05 +05:45
Saugat Pachhai (सौगात) 8ead29805f fs: rename getsize to size 2022-04-25 18:52:46 +05:45
Saugat Pachhai fecc81e951 Revert "dvc.objects: add callbacks for listing and estimating hashes"
This reverts commit 7599c6e20d.
2022-04-25 18:37:05 +05:45
Saugat Pachhai (सौगात) 7599c6e20d dvc.objects: add callbacks for listing and estimating hashes
This PR gets rid of Tqdm progress bars inside `dvc.objects`.
Those are replaced with multi-phase callback in `hashes_exist`, and
simple callable that takes `completed` value in
`odb._estimate_remote_size()`.

The `odb.list_hashes_exists()` and `odb.all()` now return iterables,
hence the caller has the responsibility of handling progress.

This is now handled in `dvc.data` by using a custom `Tqdm` progressbar.
This is ugly and is temporary, but my motivation is to remove tqdm from dvc.objects
first. We can gradually get rid of these from `dvc.data` too, but
that requires more knowledge about `dvc.data` and involves more
design work. All in time, I guess. :)
2022-04-25 18:36:47 +05:45
Saugat Pachhai (सौगात) 68a3cd9a13 fs: unify fs.base.FileSystem with FSSpecWrapper
Since all of our filesystems are fsspec-compliant, there's no need for compat wrapper.
2022-04-25 16:01:06 +09:00
David de la Iglesia Castro a394498067 render.match: Skip errored revisions in get_files 2022-04-22 16:44:52 +02:00
Saugat Pachhai (सौगात) 7708a8e292 gitfs: add regression test for broken stage.collect on gitfs when cwd != repo_root 2022-04-21 21:03:08 +05:45
Saugat Pachhai (सौगात) 23e62a9ff7 fs: make localfs fsspec-compliant
It is not completely fsspec compliant, but it's upto the level
required by our FSSpecWrapper.

Next thing to tackle would be to merging `fs.base.FileSystem`
and `fs.fsspec_wrapper.FSSpecWrapper` into one filesystem
that is lazily-loaded and is itself fsspec-compliant.
2022-04-21 12:44:55 +03:00
Saugat Pachhai (सौगात) fed0bfb2b3 tests: add test for dvc.api.open with remote
Covers #7341
2022-04-21 15:12:01 +05:45
Saugat Pachhai (सौगात) f22da81999 tests: make xfail-marked-tests to be strict by default 2022-04-21 15:06:47 +05:45
pre-commit-ci[bot] 22a988b113 [pre-commit.ci] auto fixes from pre-commit.com hooks
for more information, see https://pre-commit.ci
2022-04-21 15:06:31 +05:45
joncrall 77a8e870ff Add log statement to collect repo 2022-04-21 15:06:31 +05:45
David de la Iglesia Castro f20d6a7048 dag: Add --mermaid option. 2022-04-21 14:03:45 +05:45
Saugat Pachhai (सौगात) 6ffba62b75 executors: add support for cancel_futures=True in Python<3.9
Also adds a kwarg `cancel_on_error` on the constructor to support
cancelling futures on `shutdown`. This is not done by default to
be backward compatible with `concurrent.futures.ThreadPool` executor.
2022-04-21 14:03:10 +05:45
David de la Iglesia Castro 5c561572b0 exp init: Replace live section with metrics and plots.
Closes #7534
2022-04-21 08:55:49 +02:00
Peter Rowlands 444bf27e6f exp show: add internal --no-fetch option to disable temp/queue ref fetch 2022-04-21 15:45:59 +09:00
Peter Rowlands ba82faee53 exp show: don't acquire repo lock 2022-04-21 15:45:59 +09:00
dependabot[bot] 72d57f13bc build(deps-dev): Bump pylint from 2.13.5 to 2.13.7
Bumps [pylint](https://github.com/PyCQA/pylint) from 2.13.5 to 2.13.7.
- [Release notes](https://github.com/PyCQA/pylint/releases)
- [Changelog](https://github.com/PyCQA/pylint/blob/main/ChangeLog)
- [Commits](https://github.com/PyCQA/pylint/compare/v2.13.5...v2.13.7)

---
updated-dependencies:
- dependency-name: pylint
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-04-21 08:22:47 +05:45
Saugat Pachhai (सौगात) 02b2ab6804 stage/exp list: alias --names-only to --name-only
Fixes #7570.
2022-04-21 06:53:16 +05:45
Ruslan Kuprieiev fd440df5b3 dvcignore: use fs.path instead of os.path 2022-04-20 12:27:26 +03:00
Saugat Pachhai (सौगात) cc8a0ce134 completion: decouple completion related stuff from command
It also now uses the main parser itself that invokes the command rather than
creating a new parser object.
2022-04-20 13:29:33 +05:45
Ivan Shcheklein 5c1e7be909 bump pydrive: improves and fixes thread safety 2022-04-20 06:06:28 +05:45
David de la Iglesia Castro 179e080c2f hdfs: Fix _strip_protocol and _checksum
Match behavior previous to #6946
2022-04-19 16:22:49 +03:00
Saugat Pachhai (सौगात) f3a7ec7f48 completion: fix dvc exp completion 2022-04-19 17:28:22 +05:45
Saugat Pachhai (सौगात) c0580c740b fs: move NoDirectoriesMixin to http filesystem 2022-04-19 11:54:34 +05:45
dependabot[bot] b4dcadbc9c build(deps-dev): Bump pylint from 2.12.2 to 2.13.5 (#7518)
build(deps-dev): Bump pylint from 2.12.2 to 2.13.5
2022-04-19 11:35:10 +05:45
Ruslan Kuprieiev 55219e9089 fs: get rid of CallbackMixin in azure/gs/hdfs/webhdfs
No longer needed, as all of those filesystems already support callbacks.
2022-04-18 17:34:06 +03:00
David de la Iglesia Castro 70b57d4703 live: Remove html generation
Remove commands/live.
Remove LiveTask.
Bump dvclive.
2022-04-18 15:47:31 +02:00
Saugat Pachhai (सौगात) 5eb16ab05e parsing: use relative paths; force absolute paths to relative 2022-04-18 14:19:56 +03:00
Ruslan Kuprieiev 517f45d45f repofs: migrate to fsspec 2022-04-18 14:17:20 +03:00
Ruslan Kuprieiev 53c7f44480 repofs: rename _main_repo -> repo 2022-04-18 14:17:20 +03:00
Ruslan Kuprieiev 9d75e8261b repofs: use repo paths 2022-04-18 14:17:20 +03:00
Ruslan Kuprieiev b3b0ec1fba repofs: unify ls/walk/info/exists/etc behaviour 2022-04-18 14:17:20 +03:00
Ruslan Kuprieiev 0a3f5cbdd5 repofs: base walk on ls 2022-04-18 14:17:20 +03:00
Ruslan Kuprieiev bdd21fd481 repofs: use fs.ls 2022-04-18 14:17:20 +03:00
Ruslan Kuprieiev 394118ef3d repofs: don't assume repofs paths are the same as underlying fs paths 2022-04-18 14:17:20 +03:00
Ruslan Kuprieiev f500c66aef repofs: use fs.walk directly 2022-04-18 14:17:20 +03:00
dependabot[bot] 318235f072 build(deps): Bump pyinstaller from 4.10 to 5.0
Bumps [pyinstaller](https://github.com/pyinstaller/pyinstaller) from 4.10 to 5.0.
- [Release notes](https://github.com/pyinstaller/pyinstaller/releases)
- [Changelog](https://github.com/pyinstaller/pyinstaller/blob/develop/doc/CHANGES.rst)
- [Commits](https://github.com/pyinstaller/pyinstaller/compare/v4.10...v5.0)

---
updated-dependencies:
- dependency-name: pyinstaller
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-04-18 14:13:52 +08:00
Peter Rowlands ab395dfb7a exp show: prefer exp names for experiments 2022-04-15 14:02:35 +09:00
Nick SorrosandPaweł Redzyński dd9bc116a3 Update test name to be more informative
Co-authored-by: Paweł Redzyński <[email protected]>
2022-04-13 18:23:14 +02:00
Nick Sorros 0a3dd7a97f Move test to output and use mocker 2022-04-13 18:23:14 +02:00
Nick Sorros 5da72fc8ff Patch get_remote_odb instead 2022-04-13 18:23:14 +02:00
Nick SorrosandPaweł Redzyński d8dac6f50d Reraise RemoteMissingDepsError as is
Co-authored-by: Paweł Redzyński <[email protected]>
2022-04-13 18:23:14 +02:00
Nick Sorros 36c27ed17f Add test for remote missing when adding data dir 2022-04-13 18:23:14 +02:00
pre-commit-ci[bot] 43f5faa652 [pre-commit.ci] auto fixes from pre-commit.com hooks
for more information, see https://pre-commit.ci
2022-04-13 18:23:14 +02:00
Nick Sorros 968f9b38bf Raise informative missing s3 extra 2022-04-13 18:23:14 +02:00
pre-commit-ci[bot] aab7f8af4d [pre-commit.ci] pre-commit autoupdate
updates:
- [github.com/pre-commit/pre-commit-hooks: v4.1.0 → v4.2.0](https://github.com/pre-commit/pre-commit-hooks/compare/v4.1.0...v4.2.0)
2022-04-12 10:46:46 +09:00
Paweł Redzyński 79c87ba119 Update setup.cfg 2022-04-09 15:45:29 +03:00
dependabot[bot] aa5cfc46ed build(deps): Bump scmrepo from 0.0.16 to 0.0.17
Bumps [scmrepo](https://github.com/iterative/scmrepo) from 0.0.16 to 0.0.17.
- [Release notes](https://github.com/iterative/scmrepo/releases)
- [Commits](https://github.com/iterative/scmrepo/compare/0.0.16...0.0.17)

---
updated-dependencies:
- dependency-name: scmrepo
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-04-09 15:45:29 +03:00
Peter Rowlands 69acbe33c9 erepo: include exp refs in clones
- add test for dvc get --rev=<exp>
2022-04-09 10:27:06 +09:00
David de la Iglesia Castro 7dd0cffd49 gdrive: Add test_service_account_using_env_var 2022-04-08 21:39:03 +02:00
RCdeWit a11aac37ea Process feedback @skshetry and @karajan1001 2022-04-08 21:39:03 +02:00
Rob de WitandLaurens Duijvesteijn 6de1ddadf5 fs.gdrive: Fix GDRIVE_CREDENTIALS_DATA for service accounts
`_validate_config()` had a bug: it would not take into account that Google
Drive credentials can also be passed using `GDRIVE_CREDENTIALS_DATA` as
documented here [1].

This patches the validation logic to also accept this environment variable as a
means to provide service account credentials.

Before, commands like `dvc push` would exit with:

```
ERROR: failed to push data to the cloud - To use service account, set
  `gdrive_service_account_json_file_path`, and
  optionally`gdrive_service_account_user_email` in DVC config
Learn more at <https://man.dvc.org/remote/modify>
```

[1]: https://dvc.org/doc/user-guide/setup-google-drive-remote#authorization

Co-authored-by: Laurens Duijvesteijn <[email protected]>
2022-04-08 21:39:03 +02:00
Fabian ZillsandSaugat Pachhai 7804e6550e Update dvc/repo/index.py
Co-authored-by: Saugat Pachhai <[email protected]>
2022-04-07 21:05:47 +05:45
Fabian ZillsandSaugat Pachhai 65d935e5c7 Update dvc/repo/index.py
Co-authored-by: Saugat Pachhai <[email protected]>
2022-04-07 21:05:47 +05:45
Fabian 44af5b3b7e index: add getitem
* allow access to a stage via `getitem` in addition to iterating over the Index.
2022-04-07 21:05:47 +05:45
Paweł Redzyński 03f553c54b plots: json: show even if no results
Related: iterative/vscode-dvc#1521
2022-04-07 11:45:01 +02:00
dependabot[bot] 1e0a4a26eb build(deps): Bump codecov/codecov-action from 2.1.0 to 3
Bumps [codecov/codecov-action](https://github.com/codecov/codecov-action) from 2.1.0 to 3.
- [Release notes](https://github.com/codecov/codecov-action/releases)
- [Changelog](https://github.com/codecov/codecov-action/blob/master/CHANGELOG.md)
- [Commits](https://github.com/codecov/codecov-action/compare/v2.1.0...v3)

---
updated-dependencies:
- dependency-name: codecov/codecov-action
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-04-06 17:54:18 +02:00
413 changed files with 15839 additions and 13314 deletions
+4
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@@ -0,0 +1,4 @@
/tests
/dvc
/.github
/bin
+3
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@@ -1 +1,4 @@
node: $Format:%H$
node-date: $Format:%cI$
describe-name: $Format:%(describe:tags=true)$
ref-names: $Format:%D$
-1
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@@ -1 +0,0 @@
* @iterative/dvc
-3
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@@ -1,3 +0,0 @@
# These are supported funding model platforms
patreon: DVCorg
+3 -3
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@@ -11,12 +11,12 @@ jobs:
os: [ubuntu-18.04]
steps:
- name: Cancel Previous Runs
uses: styfle/cancel-workflow-action@0.9.1
uses: styfle/cancel-workflow-action@0.10.0
with:
access_token: ${{ github.token }}
- uses: actions/setup-python@v3
- uses: actions/setup-python@v4
with:
python-version: 3.7
python-version: 3.8
- uses: iterative/dvc-bench@main
with:
pytest_options: "-k 'test_init or test_help'"
+54 -114
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@@ -6,152 +6,92 @@ on:
release:
types: [released, prereleased]
workflow_dispatch:
jobs:
deb:
runs-on: ubuntu-18.04
binary:
strategy:
matrix:
include:
- {pkg: "deb", os: "ubuntu-18.04", asset: "dvc_${{ github.event.release.tag_name }}_amd64.deb"}
- {pkg: "rpm", os: "ubuntu-18.04", asset: "dvc-${{ github.event.release.tag_name }}-1.x86_64.rpm"}
- {pkg: "osxpkg", os: "macos-10.15", asset: "dvc-${{ github.event.release.tag_name }}.pkg"}
- {pkg: "exe", os: "windows-2019", asset: "dvc-${{ github.event.release.tag_name }}.exe"}
name: ${{ matrix.pkg }}
runs-on: ${{ matrix.os }}
steps:
- uses: actions/checkout@v3
with:
fetch-depth: 0
- name: Set up Python 3.9
uses: actions/setup-python@v3
uses: actions/setup-python@v4
with:
python-version: 3.9
- name: Set up Ruby 2.4
uses: actions/[email protected]
cache: pip
cache-dependency-path: |
setup.cfg
scripts/build-requirements.txt
- name: Set up Ruby 2.6
uses: ruby/setup-ruby@v1
if: matrix.pkg != 'exe'
with:
ruby-version: 2.4
- name: Install deps
run: |
pip install .[all]
pip install -r scripts/build-requirements.txt
gem install --no-document fpm
- name: Build deb
run: python scripts/build.py deb
- name: Publish deb
if: github.event_name == 'release'
uses: actions/[email protected]
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
with:
upload_url: ${{ github.event.release.upload_url }}
asset_path: scripts/fpm/dvc_${{ github.event.release.tag_name }}_amd64.deb
asset_name: dvc_${{ github.event.release.tag_name }}_amd64.deb
asset_content_type: binary/octet-stream
rpm:
runs-on: ubuntu-18.04
steps:
- uses: actions/checkout@v3
with:
fetch-depth: 0
- name: Set up Python 3.9
uses: actions/setup-python@v3
with:
python-version: 3.9
- name: Set up Ruby 2.4
uses: actions/[email protected]
with:
ruby-version: 2.4
- name: Install deps
run: |
pip install .[all]
pip install -r scripts/build-requirements.txt
gem install --no-document fpm
- name: Build rpm
run: python scripts/build.py rpm
- name: Publish rpm
if: github.event_name == 'release'
uses: actions/[email protected]
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
with:
upload_url: ${{ github.event.release.upload_url }}
asset_path: scripts/fpm/dvc-${{ github.event.release.tag_name }}-1.x86_64.rpm
asset_name: dvc-${{ github.event.release.tag_name }}-1.x86_64.rpm
asset_content_type: binary/octet-stream
osxpkg:
runs-on: macos-10.15
steps:
- uses: actions/checkout@v3
with:
fetch-depth: 0
- name: Set up Python 3.9
uses: actions/setup-python@v3
with:
python-version: 3.9
- name: Set up Ruby 2.4
uses: actions/[email protected]
with:
ruby-version: 2.4
- name: Install deps
run: |
# available lxml (webdav dependency) wheels are built with an old
# SDK, which breaks osxpkg notarization. Building from scratch
# instead.
pip install .[all] --no-binary lxml
pip install -r scripts/build-requirements.txt
gem install --no-document fpm
- name: Build
run: python scripts/build.py osxpkg
- name: Publish
if: github.event_name == 'release'
uses: actions/[email protected]
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
with:
upload_url: ${{ github.event.release.upload_url }}
asset_path: scripts/fpm/dvc-${{ github.event.release.tag_name }}.pkg
asset_name: dvc-${{ github.event.release.tag_name }}.pkg
asset_content_type: binary/octet-stream
exe:
runs-on: windows-2019
steps:
- uses: actions/checkout@v3
with:
fetch-depth: 0
- name: Set up Python 3.9
uses: actions/setup-python@v3
with:
python-version: 3.9
ruby-version: '2.6'
- name: Install fpm
if: matrix.pkg != 'exe'
run: gem install --no-document fpm
- name: Install deps
run: |
pip install -U wheel pip setuptools
pip install .[all]
pip install -r scripts/build-requirements.txt
- name: Pull images
run: |
dvc pull
- name: Build
run: python scripts\build.py exe
shell: cmd
- name: Publish
run: dvc pull
- name: Build ${{ matrix.pkg }}
run: python scripts/build.py ${{ matrix.pkg }}
- name: Publish ${{ matrix.pkg }}
if: github.event_name == 'release'
uses: actions/[email protected]
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
uses: actions/[email protected]
with:
upload_url: ${{ github.event.release.upload_url }}
asset_path: scripts/innosetup/dvc-${{ github.event.release.tag_name }}.exe
asset_name: dvc-${{ github.event.release.tag_name }}.exe
asset_path: scripts/${{ matrix.pkg == 'exe' && 'innosetup' || 'fpm' }}/${{ matrix.asset }}
asset_name: ${{ matrix.asset }}
asset_content_type: binary/octet-stream
pip:
runs-on: ubuntu-18.04
runs-on: ubuntu-20.04
steps:
- uses: actions/checkout@v3
with:
fetch-depth: 0
- name: Set up Python 3.7
uses: actions/setup-python@v3
- name: Set up Python 3.8
uses: actions/setup-python@v4
with:
python-version: 3.7
python-version: 3.8
cache: pip
cache-dependency-path: setup.cfg
- name: Install
run: pip install ".[all,tests]"
run: |
pip install -U wheel pip build setuptools
pip install ".[all,tests]"
- name: Build packages
run: |
pip install -U pip
./scripts/build_package.sh
- name: Publish packages to PyPI
if: github.event_name == 'release'
uses: pypa/gh-action-pypi-publish@master
uses: pypa/gh-action-pypi-publish@release/v1
with:
user: __token__
password: ${{ secrets.PYPI_TOKEN }}
+15 -10
View File
@@ -17,14 +17,14 @@ jobs:
runs-on: ubuntu-latest
steps:
- name: Cancel Previous Runs
uses: styfle/cancel-workflow-action@0.9.1
uses: styfle/cancel-workflow-action@0.10.0
with:
access_token: ${{ github.token }}
- uses: actions/checkout@v3
with:
fetch-depth: 0
- name: Set up Python 3.8
uses: actions/setup-python@v3
uses: actions/setup-python@v4
with:
python-version: 3.8
- name: Install requirements
@@ -34,7 +34,7 @@ jobs:
pip install ".[dev]" pre-commit
- name: Check README
run: python setup.py checkdocs
- uses: pre-commit/action@v2.0.3
- uses: pre-commit/action@v3.0.0
tests:
timeout-minutes: 45
runs-on: ${{ matrix.os }}
@@ -42,13 +42,19 @@ jobs:
fail-fast: false
matrix:
os: [ubuntu-20.04, windows-latest, macos-latest]
pyv: ["3.7", "3.8", "3.9", "3.10"]
pyv: ["3.8", "3.9", "3.10"]
pytest-filter:
- "import or plot or live or experiment"
- "not (import or plot or live or experiment)"
include:
- {os: ubuntu-latest, pyv: "3.11-dev"}
steps:
- uses: actions/checkout@v3
with:
fetch-depth: 0
- name: Set up Python
uses: actions/setup-python@v3
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.pyv }}
- name: get pip cache dir
@@ -68,14 +74,13 @@ jobs:
run: |
pip install --upgrade pip setuptools wheel
pip install -e ".[dev]"
env:
AIOHTTP_NO_EXTENSIONS: ${{ matrix.pyv == '3.11-dev' && '1' }}
- name: run tests
timeout-minutes: 40
run: >-
python -m tests -n=auto
--cov-report=xml --cov-report=term
${{ env.extra_test_args }}
run: pytest -nauto -ra --durations 100 --cov=dvc --cov-report=xml --cov-report=term -k "${{ matrix.pytest-filter }}"
- name: upload coverage report
uses: codecov/codecov-action@v2.1.0
uses: codecov/codecov-action@v3
with:
file: ./coverage.xml
fail_ci_if_error: false
+13 -3
View File
@@ -1,10 +1,13 @@
__pycache__/
neatlynx.conf
neatlynx/__pycache__
.idea
/cache
*.pyc
.env/
.env2.7/
.env*/
.venv
env/
venv/
.python-version
.dvc.conf.lock
@@ -26,6 +29,7 @@ innosetup/config.ini
.coverage
.coverage.*
coverage.xml
*.sw?
@@ -40,3 +44,9 @@ scripts/ci/gcp-creds.json
*~
/dvc/_dvc_version.py
.mypy_cache/
.pytest_cache/
.nox/
.tox/
htmlcov/
+2 -2
View File
@@ -6,9 +6,9 @@ repos:
- id: black
language_version: python3
repo: https://github.com/ambv/black
rev: 22.3.0
rev: 22.6.0
- repo: https://github.com/pre-commit/pre-commit-hooks
rev: v4.1.0
rev: v4.3.0
hooks:
- id: check-toml
- id: check-yaml
+128 -138
View File
@@ -3,97 +3,114 @@
`Website <https://dvc.org>`_
• `Docs <https://dvc.org/doc>`_
• `Blog <http://blog.dataversioncontrol.com>`_
• `Twitter <https://twitter.com/DVCorg>`_
• `Chat (Community & Support) <https://dvc.org/chat>`_
• `Tutorial <https://dvc.org/doc/get-started>`_
• `Mailing List <https://sweedom.us10.list-manage.com/subscribe/post?u=a08bf93caae4063c4e6a351f6&id=24c0ecc49a>`_
• `Related Technologies <https://dvc.org/doc/user-guide/related-technologies>`_
• `How DVC works`_
• `VS Code Extension`_
• `Installation`_
• `Contributing`_
• `Community and Support`_
|CI| |Maintainability| |Coverage| |Donate| |DOI|
|CI| |Python Version| |Coverage| |VS Code| |DOI|
|PyPI| |Packages| |Brew| |Conda| |Choco| |Snap|
|
**Data Version Control** or **DVC** is an **open-source** tool for data science and machine
learning projects. Key features:
**Data Version Control** or **DVC** is a command line tool and `VS Code Extension`_ to help you develop reproducible machine learning projects:
#. Simple **command line** Git-like experience. Does not require installing and maintaining
any databases. Does not depend on any proprietary online services.
#. **Version** your data and models.
Store them in your cloud storage but keep their version info in your Git repo.
#. Management and versioning of **datasets** and **machine learning
models**. Data can be saved in S3, Google cloud, Azure, Alibaba
cloud, SSH server, HDFS, or even local HDD RAID.
#. **Iterate** fast with lightweight pipelines.
When you make changes, only run the steps impacted by those changes.
#. Makes projects **reproducible** and **shareable**; helping to answer questions about how
a model was built.
#. **Track** experiments in your local Git repo (no servers needed).
#. Helps manage experiments with Git tags/branches and **metrics** tracking.
#. **Compare** any data, code, parameters, model, or performance plots.
**DVC** aims to replace spreadsheet and document sharing tools (such as Excel or Google Docs)
frequently used as both knowledge repositories and team ledgers.
DVC also replaces both ad-hoc scripts to track, move, and deploy different model versions
and ad-hoc data file suffixes and prefixes.
.. contents:: **Contents**
:backlinks: none
How DVC works
=============
We encourage you to read our `Get Started <https://dvc.org/doc/get-started>`_ guide to better understand what DVC
is and how it can fit your scenarios.
The easiest (but not perfect!) *analogy* to describe it: DVC is Git (or Git-LFS to be precise) & Makefiles
made right and tailored specifically for ML and Data Science scenarios.
#. ``Git/Git-LFS`` part - DVC helps store and share data artifacts and models, connecting them with a Git repository.
#. ``Makefile``\ s part - DVC describes how one data or model artifact was built from other data and code.
DVC usually runs along with Git. Git is used as usual to store and version code (including DVC meta-files). DVC helps
to store data and model files seamlessly out of Git, while preserving almost the same user experience as if they
were stored in Git itself. To store and share the data cache, DVC supports multiple remotes - any cloud (S3, Azure,
Google Cloud, etc) or any on-premise network storage (via SSH, for example).
|Flowchart|
The DVC pipelines (computational graph) feature connects code and data together. It is possible to explicitly
specify all steps required to produce a model: input dependencies including data, commands to run,
and output information to be saved. See the quick start section below or
the `Get Started <https://dvc.org/doc/get-started>`_ tutorial to learn more.
#. **Share** experiments and automatically reproduce anyone's experiment.
Quick start
===========
Please read `Get Started <https://dvc.org/doc/get-started>`_ guide for a full version. Common workflow commands include:
Please read our `Command Reference <https://dvc.org/doc/command-reference>`_ for a complete list.
+-----------------------------------+----------------------------------------------------------------------------+
| Step | Command |
+===================================+============================================================================+
| Track data | | ``$ git add train.py`` |
| | | ``$ dvc add images.zip`` |
+-----------------------------------+----------------------------------------------------------------------------+
| Connect code and data by commands | | ``$ dvc run -n prepare -d images.zip -o images/ unzip -q images.zip`` |
| | | ``$ dvc run -n train -d images/ -d train.py -o model.p python train.py`` |
+-----------------------------------+----------------------------------------------------------------------------+
| Make changes and reproduce | | ``$ vi train.py`` |
| | | ``$ dvc repro model.p.dvc`` |
+-----------------------------------+----------------------------------------------------------------------------+
| Share code | | ``$ git add .`` |
| | | ``$ git commit -m 'The baseline model'`` |
| | | ``$ git push`` |
+-----------------------------------+----------------------------------------------------------------------------+
| Share data and ML models | | ``$ dvc remote add myremote -d s3://mybucket/image_cnn`` |
| | | ``$ dvc push`` |
+-----------------------------------+----------------------------------------------------------------------------+
A common CLI workflow includes:
+-----------------------------------+----------------------------------------------------------------------------------------------------+
| Task | Terminal |
+===================================+====================================================================================================+
| Track data | | ``$ git add train.py params.yaml`` |
| | | ``$ dvc add images/`` |
+-----------------------------------+----------------------------------------------------------------------------------------------------+
| Connect code and data | | ``$ dvc stage add -n featurize -d images/ -o features/ python featurize.py`` |
| | | ``$ dvc stage add -n train -d features/ -d train.py -o model.p -M metrics.json python train.py`` |
+-----------------------------------+----------------------------------------------------------------------------------------------------+
| Make changes and experiment | | ``$ dvc exp run -n exp-baseline`` |
| | | ``$ vi train.py`` |
| | | ``$ dvc exp run -n exp-code-change`` |
+-----------------------------------+----------------------------------------------------------------------------------------------------+
| Compare and select experiments | | ``$ dvc exp show`` |
| | | ``$ dvc exp apply exp-baseline`` |
+-----------------------------------+----------------------------------------------------------------------------------------------------+
| Share code | | ``$ git add .`` |
| | | ``$ git commit -m 'The baseline model'`` |
| | | ``$ git push`` |
+-----------------------------------+----------------------------------------------------------------------------------------------------+
| Share data and ML models | | ``$ dvc remote add myremote -d s3://mybucket/image_cnn`` |
| | | ``$ dvc push`` |
+-----------------------------------+----------------------------------------------------------------------------------------------------+
How DVC works
=============
We encourage you to read our `Get Started
<https://dvc.org/doc/get-started>`_ docs to better understand what DVC
does and how it can fit your scenarios.
The closest *analogies* to describe the main DVC features are these:
#. **Git for data**: Store and share data artifacts (like Git-LFS but without a server) and models, connecting them with a Git repository. Data management meets GitOps!
#. **Makefiles** for ML: Describes how data or model artifacts are built from other data and code in a standard format. Now you can version your data pipelines with Git.
#. Local **experiment tracking**: Turn your machine into an ML experiment management platform, and collaborate with others using existing Git hosting (Github, Gitlab, etc.).
Git is employed as usual to store and version code (including DVC meta-files as placeholders for data).
DVC `stores data and model files <https://dvc.org/doc/start/data-management>`_ seamlessly in a cache outside of Git, while preserving almost the same user experience as if they were in the repo.
To share and back up the *data cache*, DVC supports multiple remote storage platforms - any cloud (S3, Azure, Google Cloud, etc.) or on-premise network storage (via SSH, for example).
|Flowchart|
`DVC pipelines <https://dvc.org/doc/start/data-management/pipelines>`_ (computational graphs) connect code and data together.
They specify all steps required to produce a model: input dependencies including code, data, commands to run; and output information to be saved.
Last but not least, `DVC Experiment Versioning <https://dvc.org/doc/start/experiments>`_ lets you prepare and run a large number of experiments.
Their results can be filtered and compared based on hyperparameters and metrics, and visualized with multiple plots.
.. _`VS Code Extension`:
Visual Studio Code Extension
============================
|VS Code|
To use DVC as a GUI right from your VS Code IDE, install the `DVC Extension <https://marketplace.visualstudio.com/items?itemName=Iterative.dvc>`_ from the Marketplace.
It currently features experiment tracking and data management, and more features (data pipeline support, etc.) are coming soon!
|VS Code Extension Overview|
Note: You'll have to install core DVC on your system separately (as detailed
below). The Extension will guide you if needed.
Installation
============
There are four options to install DVC: ``pip``, Homebrew, Conda (Anaconda) or an OS-specific package.
There are several ways to install DVC: in VS Code; using ``snap``, ``choco``, ``brew``, ``conda``, ``pip``; or with an OS-specific package.
Full instructions are `available here <https://dvc.org/doc/get-started/install>`_.
Snap (Snapcraft/Linux)
----------------------
Snapcraft (Linux)
-----------------
|Snap|
@@ -102,11 +119,10 @@ Snap (Snapcraft/Linux)
snap install dvc --classic
This corresponds to the latest tagged release.
Add ``--beta`` for the latest tagged release candidate,
or ``--edge`` for the latest ``main`` version.
Add ``--beta`` for the latest tagged release candidate, or ``--edge`` for the latest ``main`` version.
Choco (Chocolatey/Windows)
--------------------------
Chocolatey (Windows)
--------------------
|Choco|
@@ -114,8 +130,8 @@ Choco (Chocolatey/Windows)
choco install dvc
Brew (Homebrew/Mac OS)
----------------------
Brew (mac OS)
-------------
|Brew|
@@ -123,8 +139,8 @@ Brew (Homebrew/Mac OS)
brew install dvc
Conda (Anaconda)
----------------
Anaconda (Any platform)
-----------------------
|Conda|
@@ -133,11 +149,10 @@ Conda (Anaconda)
conda install -c conda-forge mamba # installs much faster than conda
mamba install -c conda-forge dvc
Depending on the remote storage type you plan to use to keep and share your data, you might need to
install optional dependencies: `dvc-s3`, `dvc-azure`, `dvc-gdrive`, `dvc-gs`, `dvc-oss`, `dvc-ssh`.
Depending on the remote storage type you plan to use to keep and share your data, you might need to install optional dependencies: `dvc-s3`, `dvc-azure`, `dvc-gdrive`, `dvc-gs`, `dvc-oss`, `dvc-ssh`.
pip (PyPI)
----------
PyPI (Python)
-------------
|PyPI|
@@ -145,10 +160,8 @@ pip (PyPI)
pip install dvc
Depending on the remote storage type you plan to use to keep and share your data, you might need to specify
one of the optional dependencies: ``s3``, ``gs``, ``azure``, ``oss``, ``ssh``. Or ``all`` to include them all.
The command should look like this: ``pip install dvc[s3]`` (in this case AWS S3 dependencies such as ``boto3``
will be installed automatically).
Depending on the remote storage type you plan to use to keep and share your data, you might need to specify one of the optional dependencies: ``s3``, ``gs``, ``azure``, ``oss``, ``ssh``. Or ``all`` to include them all.
The command should look like this: ``pip install 'dvc[s3]'`` (in this case AWS S3 dependencies such as ``boto3`` will be installed automatically).
To install the development version, run:
@@ -156,88 +169,58 @@ To install the development version, run:
pip install git+git://github.com/iterative/dvc
Package
-------
Package (Platform-specific)
---------------------------
|Packages|
Self-contained packages for Linux, Windows, and Mac are available. The latest version of the packages
can be found on the GitHub `releases page <https://github.com/iterative/dvc/releases>`_.
Self-contained packages for Linux, Windows, and Mac are available.
The latest version of the packages can be found on the GitHub `releases page <https://github.com/iterative/dvc/releases>`_.
Ubuntu / Debian (deb)
^^^^^^^^^^^^^^^^^^^^^
.. code-block:: bash
sudo wget https://dvc.org/deb/dvc.list -O /etc/apt/sources.list.d/dvc.list
sudo apt-get update
sudo apt-get install dvc
wget -qO - https://dvc.org/deb/iterative.asc | sudo apt-key add -
sudo apt update
sudo apt install dvc
Fedora / CentOS (rpm)
^^^^^^^^^^^^^^^^^^^^^
.. code-block:: bash
sudo wget https://dvc.org/rpm/dvc.repo -O /etc/yum.repos.d/dvc.repo
sudo rpm --import https://dvc.org/rpm/iterative.asc
sudo yum update
sudo yum install dvc
Comparison to related technologies
==================================
#. Data Engineering tools such as `AirFlow <https://airflow.apache.org/>`_,
`Luigi <https://github.com/spotify/luigi>`_, and others - in DVC data,
model and ML pipelines represent a single ML project focused on data
scientists' experience. Data engineering tools orchestrate multiple data
projects and focus on efficient execution. A DVC project can be used from
existing data pipelines as a single execution step.
#. `Git-annex <https://git-annex.branchable.com/>`_ - DVC uses the idea of storing the content of large files (which should
not be in a Git repository) in a local key-value store, and uses file hardlinks/symlinks instead of
copying/duplicating files.
#. `Git-LFS <https://git-lfs.github.com/>`_ - DVC is compatible with many
remote storage services (S3, Google Cloud, Azure, SSH, etc). DVC also
uses reflinks or hardlinks to avoid copy operations on checkouts; thus
handling large data files much more efficiently.
#. Makefile (and analogues including ad-hoc scripts) - DVC tracks
dependencies (in a directed acyclic graph).
#. `Workflow Management Systems <https://en.wikipedia.org/wiki/Workflow_management_system>`_ - DVC is a workflow
management system designed specifically to manage machine learning experiments. DVC is built on top of Git.
#. `DAGsHub <https://dagshub.com/>`_ - online service to host DVC
projects. It provides a useful UI around DVC repositories and integrates
other tools.
#. `DVC Studio <https://studio.iterative.ai/>`_ - official online
platform for DVC projects. It can be used to manage data and models, run
and track experiments, and visualize and share results. Also, it
integrates with `CML (CI/CD for ML) <https://cml.dev/>`__ for training
models in the cloud or Kubernetes.
Contributing
============
|Maintainability| |Donate|
|Maintainability|
Contributions are welcome! Please see our `Contributing Guide <https://dvc.org/doc/user-guide/contributing/core>`_ for more
details. Thanks to all our contributors!
Contributions are welcome!
Please see our `Contributing Guide <https://dvc.org/doc/user-guide/contributing/core>`_ for more details.
Thanks to all our contributors!
|Contribs|
Mailing List
============
Community and Support
=====================
Want to stay up to date? Want to help improve DVC by participating in our occasional polls? Subscribe to our `mailing list <https://sweedom.us10.list-manage.com/subscribe/post?u=a08bf93caae4063c4e6a351f6&id=24c0ecc49a>`_. No spam, really low traffic.
* `Twitter <https://twitter.com/DVCorg>`_
* `Forum <https://discuss.dvc.org/>`_
* `Discord Chat <https://dvc.org/chat>`_
* `Email <mailto:[email protected]>`_
* `Mailing List <https://sweedom.us10.list-manage.com/subscribe/post?u=a08bf93caae4063c4e6a351f6&id=24c0ecc49a>`_
Copyright
=========
This project is distributed under the Apache license version 2.0 (see the LICENSE file in the project root).
By submitting a pull request to this project, you agree to license your contribution under the Apache license version
2.0 to this project.
By submitting a pull request to this project, you agree to license your contribution under the Apache license version 2.0 to this project.
Citation
========
@@ -254,6 +237,9 @@ Barrak, A., Eghan, E.E. and Adams, B. `On the Co-evolution of ML Pipelines and S
:target: https://dvc.org
:alt: DVC logo
.. |VS Code Extension Overview| image:: https://raw.githubusercontent.com/iterative/vscode-dvc/main/extension/docs/overview.gif
:alt: DVC Extension for VS Code
.. |CI| image:: https://github.com/iterative/dvc/workflows/Tests/badge.svg?branch=main
:target: https://github.com/iterative/dvc/actions
:alt: GHA Tests
@@ -262,14 +248,14 @@ Barrak, A., Eghan, E.E. and Adams, B. `On the Co-evolution of ML Pipelines and S
:target: https://codeclimate.com/github/iterative/dvc
:alt: Code Climate
.. |Python Version| image:: https://img.shields.io/pypi/pyversions/dvc
:target: https://pypi.org/project/dvc
:alt: Python Version
.. |Coverage| image:: https://codecov.io/gh/iterative/dvc/branch/main/graph/badge.svg
:target: https://codecov.io/gh/iterative/dvc
:alt: Codecov
.. |Donate| image:: https://img.shields.io/badge/patreon-donate-green.svg?logo=patreon
:target: https://www.patreon.com/DVCorg/overview
:alt: Donate
.. |Snap| image:: https://img.shields.io/badge/snap-install-82BEA0.svg?logo=snapcraft
:target: https://snapcraft.io/dvc
:alt: Snapcraft
@@ -305,3 +291,7 @@ Barrak, A., Eghan, E.E. and Adams, B. `On the Co-evolution of ML Pipelines and S
.. |Contribs| image:: https://contrib.rocks/image?repo=iterative/dvc
:target: https://github.com/iterative/dvc/graphs/contributors
:alt: Contributors
.. |VS Code| image:: https://vsmarketplacebadge.apphb.com/version/Iterative.dvc.svg
:target: https://marketplace.visualstudio.com/items?itemName=Iterative.dvc
:alt: VS Code Extension
+2 -2
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@@ -50,7 +50,7 @@ def is_enabled():
Config(validate=False).get("core", {}).get("analytics", "true")
)
logger.debug("Analytics is {}abled.".format("en" if enabled else "dis"))
logger.debug("Analytics is %sabled.", "en" if enabled else "dis")
return enabled
@@ -187,4 +187,4 @@ def _find_or_create_user_id():
return user_id
except LockError:
logger.debug(f"Failed to acquire '{lockfile}'")
logger.debug("Failed to acquire '%s'", lockfile)
+35
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@@ -0,0 +1,35 @@
from dataclasses import asdict, dataclass, field, fields
from typing import Any, ClassVar, Dict, List, Optional
from funcy import compact
@dataclass
class Annotation:
PARAM_DESC: ClassVar[str] = "desc"
PARAM_TYPE: ClassVar[str] = "type"
PARAM_LABELS: ClassVar[str] = "labels"
PARAM_META: ClassVar[str] = "meta"
desc: Optional[str] = None
type: Optional[str] = None
labels: List[str] = field(default_factory=list)
meta: Dict[str, Any] = field(default_factory=dict)
def update(self, **kwargs) -> "Annotation":
for attr, value in kwargs.items():
if value and hasattr(self, attr):
setattr(self, attr, value)
return self
def to_dict(self) -> Dict[str, str]:
return compact(asdict(self))
ANNOTATION_FIELDS = [field.name for field in fields(Annotation)]
ANNOTATION_SCHEMA = {
Annotation.PARAM_DESC: str,
Annotation.PARAM_TYPE: str,
Annotation.PARAM_LABELS: [str],
Annotation.PARAM_META: object,
}
-127
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@@ -1,127 +0,0 @@
import os
from contextlib import _GeneratorContextManager as GCM
from funcy import reraise
from dvc.exceptions import OutputNotFoundError, PathMissingError
from dvc.repo import Repo
def get_url(path, repo=None, rev=None, remote=None):
"""
Returns the URL to the storage location of a data file or directory tracked
in a DVC repo. For Git repos, HEAD is used unless a rev argument is
supplied. The default remote is tried unless a remote argument is supplied.
Raises OutputNotFoundError if the file is not tracked by DVC.
NOTE: This function does not check for the actual existence of the file or
directory in the remote storage.
"""
with Repo.open(repo, rev=rev, subrepos=True, uninitialized=True) as _repo:
fs_path = _repo.fs.path.join(_repo.root_dir, path)
with reraise(FileNotFoundError, PathMissingError(path, repo)):
info = _repo.repo_fs.info(fs_path)
if not info["isdvc"]:
raise OutputNotFoundError(path, repo)
cloud = info["repo"].cloud
dvc_path = _repo.fs.path.relpath(fs_path, info["repo"].root_dir)
if not os.path.isabs(path):
dvc_path = dvc_path.replace("\\", "/")
md5 = info["repo"].dvcfs.info(dvc_path)["md5"]
return cloud.get_url_for(remote, checksum=md5)
def open( # noqa, pylint: disable=redefined-builtin
path, repo=None, rev=None, remote=None, mode="r", encoding=None
):
"""
Open file in the supplied path tracked in a repo (both DVC projects and
plain Git repos are supported). For Git repos, HEAD is used unless a rev
argument is supplied. The default remote is tried unless a remote argument
is supplied. It may only be used as a context manager:
with dvc.api.open(
'path/to/file',
repo='https://example.com/url/to/repo'
) as fd:
# ... Handle file object fd
"""
args = (path,)
kwargs = {
"repo": repo,
"remote": remote,
"rev": rev,
"mode": mode,
"encoding": encoding,
}
return _OpenContextManager(_open, args, kwargs)
class _OpenContextManager(GCM):
def __init__(
self, func, args, kwds
): # pylint: disable=super-init-not-called
self.gen = func(*args, **kwds)
self.func, self.args, self.kwds = func, args, kwds
def __getattr__(self, name):
raise AttributeError(
"dvc.api.open() should be used in a with statement."
)
def _open(path, repo=None, rev=None, remote=None, mode="r", encoding=None):
with Repo.open(repo, rev=rev, subrepos=True, uninitialized=True) as _repo:
with _repo.open_by_relpath(
path, remote=remote, mode=mode, encoding=encoding
) as fd:
yield fd
def read(path, repo=None, rev=None, remote=None, mode="r", encoding=None):
"""
Returns the contents of a tracked file (by DVC or Git). For Git repos, HEAD
is used unless a rev argument is supplied. The default remote is tried
unless a remote argument is supplied.
"""
with open(
path, repo=repo, rev=rev, remote=remote, mode=mode, encoding=encoding
) as fd:
return fd.read()
def make_checkpoint():
"""
Signal DVC to create a checkpoint experiment.
If the current process is being run from DVC, this function will block
until DVC has finished creating the checkpoint. Otherwise, this function
will return immediately.
"""
import builtins
from time import sleep
from dvc.env import DVC_CHECKPOINT, DVC_ROOT
from dvc.stage.monitor import CheckpointTask
if os.getenv(DVC_CHECKPOINT) is None:
return
root_dir = os.getenv(DVC_ROOT, Repo.find_root())
signal_file = os.path.join(
root_dir, Repo.DVC_DIR, "tmp", CheckpointTask.SIGNAL_FILE
)
with builtins.open(signal_file, "w", encoding="utf-8") as fobj:
# NOTE: force flushing/writing empty file to disk, otherwise when
# run in certain contexts (pytest) file may not actually be written
fobj.write("")
fobj.flush()
os.fsync(fobj.fileno())
while os.path.exists(signal_file):
sleep(0.1)
+15
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@@ -0,0 +1,15 @@
from dvc.fs.dvc import _DvcFileSystem as DvcFileSystem
from .data import open # pylint: disable=redefined-builtin
from .data import get_url, read
from .experiments import make_checkpoint
from .params import params_show
__all__ = [
"get_url",
"make_checkpoint",
"open",
"params_show",
"read",
"DvcFileSystem",
]
+213
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@@ -0,0 +1,213 @@
from contextlib import _GeneratorContextManager as GCM
from typing import Optional
from funcy import reraise
from dvc.exceptions import OutputNotFoundError, PathMissingError
from dvc.repo import Repo
def get_url(path, repo=None, rev=None, remote=None):
"""
Returns the URL to the storage location of a data file or directory tracked
in a DVC repo. For Git repos, HEAD is used unless a rev argument is
supplied. The default remote is tried unless a remote argument is supplied.
Raises OutputNotFoundError if the file is not tracked by DVC.
NOTE: This function does not check for the actual existence of the file or
directory in the remote storage.
"""
with Repo.open(repo, rev=rev, subrepos=True, uninitialized=True) as _repo:
fs_path = _repo.dvcfs.from_os_path(path)
with reraise(FileNotFoundError, PathMissingError(path, repo)):
info = _repo.dvcfs.info(fs_path)
dvc_info = info.get("dvc_info")
if not dvc_info:
raise OutputNotFoundError(path, repo)
dvc_repo = info["repo"]
md5 = dvc_info["md5"]
return dvc_repo.cloud.get_url_for(remote, checksum=md5)
class _OpenContextManager(GCM):
def __init__(
self, func, args, kwds
): # pylint: disable=super-init-not-called
self.gen = func(*args, **kwds)
self.func, self.args, self.kwds = func, args, kwds
def __getattr__(self, name):
raise AttributeError(
"dvc.api.open() should be used in a with statement."
)
def open( # noqa, pylint: disable=redefined-builtin
path: str,
repo: Optional[str] = None,
rev: Optional[str] = None,
remote: Optional[str] = None,
mode: str = "r",
encoding: Optional[str] = None,
):
"""
Opens a file tracked in a DVC project.
This function may only be used as a context manager (using the `with`
keyword, as shown in the examples).
This function makes a direct connection to the remote storage, so the file
contents can be streamed. Your code can process the data buffer as it's
streamed, which optimizes memory usage.
Note:
Use dvc.api.read() to load the complete file contents
in a single function call, no context manager involved.
Neither function utilizes disc space.
Args:
path (str): location and file name of the target to open,
relative to the root of `repo`.
repo (str, optional): location of the DVC project or Git Repo.
Defaults to the current DVC project (found by walking up from the
current working directory tree).
It can be a URL or a file system path.
Both HTTP and SSH protocols are supported for online Git repos
(e.g. [user@]server:project.git).
rev (str, optional): Any `Git revision`_ such as a branch or tag name,
a commit hash or a dvc experiment name.
Defaults to HEAD.
If `repo` is not a Git repo, this option is ignored.
remote (str, optional): Name of the `DVC remote`_ used to form the
returned URL string.
Defaults to the `default remote`_ of `repo`.
For local projects, the cache is tried before the default remote.
mode (str, optional): Specifies the mode in which the file is opened.
Defaults to "r" (read).
Mirrors the namesake parameter in builtin `open()`_.
Only reading `mode` is supported.
encoding(str, optional): `Codec`_ used to decode the file contents.
Defaults to None.
This should only be used in text mode.
Mirrors the namesake parameter in builtin `open()`_.
Returns:
_OpenContextManager: A context manager that generatse a corresponding
`file object`_.
The exact type of file object depends on the mode used.
For more details, please refer to Python's `open()`_ built-in,
which is used under the hood.
Raises:
AttributeError: If this method is not used as a context manager.
ValueError: If non-read `mode` is used.
Examples:
- Use data or models from a DVC repository.
Any file tracked in a DVC project (and stored remotely) can be
processed directly in your Python code with this API.
For example, an XML file tracked in a public DVC repo on GitHub can be
processed like this:
>>> from xml.sax import parse
>>> import dvc.api
>>> from mymodule import mySAXHandler
>>> with dvc.api.open(
... 'get-started/data.xml',
... repo='https://github.com/iterative/dataset-registry'
... ) as fd:
... parse(fd, mySAXHandler)
We use a SAX XML parser here because dvc.api.open() is able to stream
the data from remote storage.
The mySAXHandler object should handle the event-driven parsing of the
document in this case.
This increases the performance of the code (minimizing memory usage),
and is typically faster than loading the whole data into memory.
- Accessing private repos
This is just a matter of using the right repo argument, for example an
SSH URL (requires that the credentials are configured locally):
>>> import dvc.api
>>> with dvc.api.open(
... 'features.dat',
... repo='[email protected]:path/to/repo.git'
... ) as fd:
... # ... Process 'features'
... pass
- Use different versions of data
Any git revision (see `rev`) can be accessed programmatically.
For example, if your DVC repo has tagged releases of a CSV dataset:
>>> import csv
>>> import dvc.api
>>> with dvc.api.open(
... 'clean.csv',
... rev='v1.1.0'
... ) as fd:
... reader = csv.reader(fd)
... # ... Process 'clean' data from version 1.1.0
.. _Git revision:
https://git-scm.com/docs/revisions
.. _DVC remote:
https://dvc.org/doc/command-reference/remote
.. _default remote:
https://dvc.org/doc/command-reference/remote/default
.. _open():
https://docs.python.org/3/library/functions.html#open
.. _Codec:
https://docs.python.org/3/library/codecs.html#standard-encodings
.. _file object:
https://docs.python.org/3/glossary.html#term-file-object
"""
if "r" not in mode:
raise ValueError("Only reading `mode` is supported.")
args = (path,)
kwargs = {
"repo": repo,
"remote": remote,
"rev": rev,
"mode": mode,
"encoding": encoding,
}
return _OpenContextManager(_open, args, kwargs)
def _open(path, repo=None, rev=None, remote=None, mode="r", encoding=None):
with Repo.open(repo, rev=rev, subrepos=True, uninitialized=True) as _repo:
with _repo.open_by_relpath(
path, remote=remote, mode=mode, encoding=encoding
) as fd:
yield fd
def read(path, repo=None, rev=None, remote=None, mode="r", encoding=None):
"""
Returns the contents of a tracked file (by DVC or Git). For Git repos, HEAD
is used unless a rev argument is supplied. The default remote is tried
unless a remote argument is supplied.
"""
with open(
path, repo=repo, rev=rev, remote=remote, mode=mode, encoding=encoding
) as fd:
return fd.read()
+33
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@@ -0,0 +1,33 @@
import builtins
import os
from time import sleep
from dvc.env import DVC_CHECKPOINT, DVC_ROOT
from dvc.repo import Repo
from dvc.stage.monitor import CheckpointTask
def make_checkpoint():
"""
Signal DVC to create a checkpoint experiment.
If the current process is being run from DVC, this function will block
until DVC has finished creating the checkpoint. Otherwise, this function
will return immediately.
"""
if os.getenv(DVC_CHECKPOINT) is None:
return
root_dir = os.getenv(DVC_ROOT, Repo.find_root())
signal_file = os.path.join(
root_dir, Repo.DVC_DIR, "tmp", CheckpointTask.SIGNAL_FILE
)
with builtins.open(signal_file, "w", encoding="utf-8") as fobj:
# NOTE: force flushing/writing empty file to disk, otherwise when
# run in certain contexts (pytest) file may not actually be written
fobj.write("")
fobj.flush()
os.fsync(fobj.fileno())
while os.path.exists(signal_file):
sleep(0.1)
+278
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@@ -0,0 +1,278 @@
from collections import Counter
from typing import Dict, Iterable, Optional, Union
from funcy import first
from dvc.exceptions import DvcException
from dvc.repo import Repo
def params_show(
*targets: str,
repo: Optional[str] = None,
stages: Optional[Union[str, Iterable[str]]] = None,
rev: Optional[str] = None,
deps: bool = False,
) -> Dict:
"""Get parameters tracked in `repo`.
Without arguments, this function will retrieve all params from all tracked
parameter files, for the current working tree.
See the options below to restrict the parameters retrieved.
Args:
*targets (str, optional): Names of the parameter files to retrieve
params from. For example, "params.py, myparams.toml".
If no `targets` are provided, all parameter files tracked in `dvc.yaml`
will be used.
Note that targets don't necessarily have to be defined in `dvc.yaml`.
repo (str, optional): location of the DVC repository.
Defaults to the current project (found by walking up from the
current working directory tree).
It can be a URL or a file system path.
Both HTTP and SSH protocols are supported for online Git repos
(e.g. [user@]server:project.git).
stages (Union[str, Iterable[str]], optional): Name or names of the
stages to retrieve parameters from.
Defaults to `None`.
If `None`, all parameters from all stages will be retrieved.
If this method is called from a different location to the one where
the `dvc.yaml` is found, the relative path to the `dvc.yaml` must
be provided as a prefix with the syntax `{relpath}:{stage}`.
For example: `subdir/dvc.yaml:stage-0` or `../dvc.yaml:stage-1`.
rev (str, optional): Name of the `Git revision`_ to retrieve parameters
from.
Defaults to `None`.
An example of git revision can be a branch or tag name, a commit
hash or a dvc experiment name.
If `repo` is not a Git repo, this option is ignored.
If `None`, the current working tree will be used.
deps (bool, optional): Whether to retrieve only parameters that are
stage dependencies or not.
Defaults to `False`.
Returns:
Dict: See Examples below.
Raises:
DvcException: If no params are found in `repo`.
Examples:
- No arguments.
Working on https://github.com/iterative/example-get-started
>>> import json
>>> import dvc.api
>>> params = dvc.api.params_show()
>>> print(json.dumps(params, indent=4))
{
"prepare": {
"split": 0.2,
"seed": 20170428
},
"featurize": {
"max_features": 200,
"ngrams": 2
},
"train": {
"seed": 20170428,
"n_est": 50,
"min_split": 0.01
}
}
---
- Filtering with `stages`.
Working on https://github.com/iterative/example-get-started
`stages` can a single string:
>>> import json
>>> import dvc.api
>>> params = dvc.api.params_show(stages="prepare")
>>> print(json.dumps(params, indent=4))
{
"prepare": {
"split": 0.2,
"seed": 20170428
}
}
Or an iterable of strings:
>>> import json
>>> import dvc.api
>>> params = dvc.api.params_show(stages=["prepare", "train"])
>>> print(json.dumps(params, indent=4))
{
"prepare": {
"split": 0.2,
"seed": 20170428
},
"train": {
"seed": 20170428,
"n_est": 50,
"min_split": 0.01
}
}
---
- Using `rev`.
Working on https://github.com/iterative/example-get-started
>>> import json
>>> import dvc.api
>>> params = dvc.api.params_show(rev="tune-hyperparams")
>>> print(json.dumps(params, indent=4))
{
"prepare": {
"split": 0.2,
"seed": 20170428
},
"featurize": {
"max_features": 200,
"ngrams": 2
},
"train": {
"seed": 20170428,
"n_est": 100,
"min_split": 8
}
}
---
- Using `targets`.
Working on `multi-params-files` folder of
https://github.com/iterative/pipeline-conifguration
You can pass a single target:
>>> import json
>>> import dvc.api
>>> params = dvc.api.params_show("params.yaml")
>>> print(json.dumps(params, indent=4))
{
"run_mode": "prod",
"configs": {
"dev": "configs/params_dev.yaml",
"test": "configs/params_test.yaml",
"prod": "configs/params_prod.yaml"
},
"evaluate": {
"dataset": "micro",
"size": 5000,
"metrics": ["f1", "roc-auc"],
"metrics_file": "reports/metrics.json",
"plots_cm": "reports/plot_confusion_matrix.png"
}
}
Or multiple targets:
>>> import json
>>> import dvc.api
>>> params = dvc.api.params_show(
... "configs/params_dev.yaml", "configs/params_prod.yaml")
>>> print(json.dumps(params, indent=4))
{
"configs/params_prod.yaml:run_mode": "prod",
"configs/params_prod.yaml:config_file": "configs/params_prod.yaml",
"configs/params_prod.yaml:data_load": {
"dataset": "large",
"sampling": {
"enable": true,
"size": 50000
}
},
"configs/params_prod.yaml:train": {
"epochs": 1000
},
"configs/params_dev.yaml:run_mode": "dev",
"configs/params_dev.yaml:config_file": "configs/params_dev.yaml",
"configs/params_dev.yaml:data_load": {
"dataset": "development",
"sampling": {
"enable": true,
"size": 1000
}
},
"configs/params_dev.yaml:train": {
"epochs": 10
}
}
---
- Git URL as `repo`.
>>> import json
>>> import dvc.api
>>> params = dvc.api.params_show(
... repo="https://github.com/iterative/demo-fashion-mnist")
{
"train": {
"batch_size": 128,
"hidden_units": 64,
"dropout": 0.4,
"num_epochs": 10,
"lr": 0.001,
"conv_activation": "relu"
}
}
.. _Git revision:
https://git-scm.com/docs/revisions
"""
if isinstance(stages, str):
stages = [stages]
def _onerror_raise(result: Dict, exception: Exception, *args, **kwargs):
raise exception
def _postprocess(params):
processed = {}
for rev, rev_data in params.items():
processed[rev] = {}
counts = Counter()
for file_data in rev_data["data"].values():
for k in file_data["data"]:
counts[k] += 1
for file_name, file_data in rev_data["data"].items():
to_merge = {
(k if counts[k] == 1 else f"{file_name}:{k}"): v
for k, v in file_data["data"].items()
}
processed[rev] = {**processed[rev], **to_merge}
if "workspace" in processed:
del processed["workspace"]
if not processed:
raise DvcException("No params found")
return processed[first(processed)]
with Repo.open(repo) as _repo:
params = _repo.params.show(
revs=rev if rev is None else [rev],
targets=targets,
deps=deps,
onerror=_onerror_raise,
stages=stages,
)
return _postprocess(params)
+108 -23
View File
@@ -6,6 +6,7 @@ import sys
# Workaround for CPython bug. See [1] and [2] for more info.
# [1] https://github.com/aws/aws-cli/blob/1.16.277/awscli/clidriver.py#L55
# [2] https://bugs.python.org/issue29288
from typing import Optional
"".encode("idna")
@@ -32,9 +33,104 @@ def parse_args(argv=None):
parser = get_main_parser()
args = parser.parse_args(argv)
args.parser = parser
return args
def _log_unknown_exceptions() -> None:
from dvc.info import get_dvc_info
from dvc.logger import FOOTER
logger.exception("unexpected error")
if logger.isEnabledFor(logging.DEBUG):
logger.debug("Version info for developers:\n%s", get_dvc_info())
logger.info(FOOTER)
return None
def _log_exceptions(exc: Exception) -> Optional[int]:
"""Try to log some known exceptions, that are not DVCExceptions."""
from dvc.utils import error_link, format_link
if isinstance(exc, OSError):
import errno
if exc.errno == errno.EMFILE:
logger.exception(
"too many open files, please visit "
"{} to see how to handle this "
"problem".format(error_link("many-files")),
extra={"tb_only": True},
)
else:
_log_unknown_exceptions()
return None
from dvc.fs import AuthError, ConfigError, RemoteMissingDepsError
if isinstance(exc, RemoteMissingDepsError):
from dvc.utils.pkg import PKG
proto = exc.protocol
by_pkg = {
"pip": f"pip install 'dvc[{proto}]'",
"conda": f"conda install -c conda-forge dvc-{proto}",
}
cmd = by_pkg.get(PKG)
if cmd:
link = format_link("https://dvc.org/doc/install")
hint = (
f"To install dvc with those dependencies, run:\n"
"\n"
f"\t{cmd}\n"
"\n"
f"See {link} for more info."
)
else:
link = format_link("https://github.com/iterative/dvc/issues")
hint = f"\nPlease report this bug to {link}. Thank you!"
logger.exception(
f"URL '{exc.url}' is supported but requires these missing "
f"dependencies: {exc.missing_deps}. {hint}",
extra={"tb_only": True},
)
return None
if isinstance(exc, (AuthError, ConfigError)):
link = format_link("https://man.dvc.org/remote/modify")
logger.exception("configuration error")
logger.exception(
f"{exc!s}\nLearn more about configuration settings at {link}.",
extra={"tb_only": True},
)
return 251
from dvc_data.hashfile.cache import DiskError
if isinstance(exc, DiskError):
from dvc.utils import relpath
directory = relpath(exc.directory)
logger.exception(
f"Could not open pickled '{exc.type}' cache.\n"
f"Remove the '{directory}' directory and then retry this command."
f"\nSee {error_link('pickle')} for more information.",
extra={"tb_only": True},
)
return None
from dvc_data.hashfile.build import IgnoreInCollectedDirError
if isinstance(exc, IgnoreInCollectedDirError):
logger.exception("")
return None
_log_unknown_exceptions()
return None
def main(argv=None): # noqa: C901
"""Main entry point for dvc CLI.
@@ -47,7 +143,7 @@ def main(argv=None): # noqa: C901
from dvc._debug import debugtools
from dvc.config import ConfigError
from dvc.exceptions import DvcException, NotDvcRepoError
from dvc.logger import FOOTER, disable_other_loggers
from dvc.logger import disable_other_loggers, set_loggers_level
# NOTE: stderr/stdout may be closed if we are running from dvc.daemon.
# On Linux we directly call cli.main after double forking and closing
@@ -75,7 +171,7 @@ def main(argv=None): # noqa: C901
level = logging.TRACE
if level is not None:
logger.setLevel(level)
set_loggers_level(level)
logger.trace(args)
@@ -93,6 +189,15 @@ def main(argv=None): # noqa: C901
except KeyboardInterrupt:
logger.exception("interrupted by the user")
ret = 252
except BrokenPipeError:
import os
# Python flushes standard streams on exit; redirect remaining output
# to devnull to avoid another BrokenPipeError at shutdown
# See: https://docs.python.org/3/library/signal.html#note-on-sigpipe
devnull = os.open(os.devnull, os.O_WRONLY)
os.dup2(devnull, sys.stdout.fileno())
ret = 141 # 128 + 13 (SIGPIPE)
except NotDvcRepoError:
logger.exception("")
ret = 253
@@ -103,27 +208,7 @@ def main(argv=None): # noqa: C901
ret = 254
except Exception as exc: # noqa, pylint: disable=broad-except
# pylint: disable=no-member
import errno
if isinstance(exc, OSError) and exc.errno == errno.EMFILE:
from dvc.utils import error_link
logger.exception(
"too many open files, please visit "
"{} to see how to handle this "
"problem".format(error_link("many-files")),
extra={"tb_only": True},
)
else:
from dvc.info import get_dvc_info
logger.exception("unexpected error")
dvc_info = get_dvc_info()
logger.debug("Version info for developers:\n%s", dvc_info)
logger.info(FOOTER)
ret = 255
ret = _log_exceptions(exc) or 255
try:
from dvc import analytics
+20
View File
@@ -0,0 +1,20 @@
from argparse import _AppendAction
class CommaSeparatedArgs(_AppendAction): # pylint: disable=protected-access
def __call__(self, parser, namespace, values, option_string=None):
from funcy import ldistinct
items = getattr(namespace, self.dest) or []
items.extend(map(str.strip, values.split(",")))
setattr(namespace, self.dest, ldistinct(items))
class KeyValueArgs(_AppendAction):
def __call__(self, parser, namespace, values, option_string=None):
items = getattr(namespace, self.dest) or {}
for value in filter(bool, values):
key, _, value = value.partition("=")
items[key.strip()] = value
setattr(namespace, self.dest, items)
+1 -1
View File
@@ -13,7 +13,7 @@ class CmdBase(ABC):
os.chdir(args.cd)
self.repo = Repo(uninitialized=self.UNINITIALIZED)
self.repo: "Repo" = Repo(uninitialized=self.UNINITIALIZED)
self.config = self.repo.config
self.args = args
+73
View File
@@ -0,0 +1,73 @@
import shtab
BASH_PREAMBLE = """
# $1=COMP_WORDS[1]
_dvc_compgen_DVCFiles() {
compgen -d -S '/' -- $1 # recurse into subdirs
compgen -f -X '!*?.dvc' -- $1
compgen -f -X '!*Dvcfile' -- $1
compgen -f -X '!*dvc.yaml' -- $1
}
_dvc_compgen_stages() {
local _dvc_stages=($(dvc stage list -q --names-only))
compgen -W "${_dvc_stages[*]}" -- $1
}
_dvc_compgen_stages_and_files() {
_dvc_compgen_DVCFiles $1
_dvc_compgen_stages $1
}
_dvc_compgen_exps() {
local _dvc_exps=($(dvc exp list -q --all-commits --names-only))
compgen -W "${_dvc_exps[*]}" -- $1
}
"""
ZSH_PREAMBLE = """
_dvc_compadd_DVCFiles() {
_files -g '(*?.dvc|Dvcfile|dvc.yaml)'
}
_dvc_compadd_stages() {
# this will also show up the description of the stages
_describe 'stages' "($(_dvc_stages_output))"
}
_dvc_stages_output() {
dvc stage list -q | awk '{
# escape possible `:` on the stage name
sub(/:/, "\\\\\\\\:", $1);
# read all of the columns except the first
# reading `out` from $2, so as not to have a leading whitespace
out=$2; for(i=3;i<=NF;i++){out=out" "$i};
# print key, ":" and then single-quote the description
# colon is a delimiter used by `_describe` to separate field/description
print $1":""\\047"out"\\047"
# single quote -> \\047
}'
}
_dvc_compadd_stages_and_files() {
_dvc_compadd_DVCFiles
_dvc_compadd_stages
}
_dvc_compadd_exps() {
_describe 'experiments' "($(dvc exp list -q --all-commits --names-only))"
}
"""
PREAMBLE = {
"bash": BASH_PREAMBLE,
"zsh": ZSH_PREAMBLE,
}
FILE = shtab.FILE
DIR = shtab.DIRECTORY
DVC_FILE = {"bash": "_dvc_compgen_DVCFiles", "zsh": "_dvc_compadd_DVCFiles"}
STAGE = {"bash": "_dvc_compgen_stages", "zsh": "_dvc_compadd_stages"}
DVCFILES_AND_STAGE = {
"bash": "_dvc_compgen_stages_and_files",
"zsh": "_dvc_compadd_stages_and_files",
}
EXPERIMENT = {"bash": "_dvc_compgen_exps", "zsh": "_dvc_compadd_exps"}
+4 -2
View File
@@ -14,6 +14,7 @@ from dvc.commands import (
config,
daemon,
dag,
data,
data_sync,
destroy,
diff,
@@ -27,13 +28,13 @@ from dvc.commands import (
imp_url,
init,
install,
live,
ls,
machine,
metrics,
move,
params,
plots,
queue,
remote,
remove,
repro,
@@ -51,6 +52,7 @@ logger = logging.getLogger(__name__)
COMMANDS = [
init,
queue,
get,
get_url,
destroy,
@@ -86,8 +88,8 @@ COMMANDS = [
stage,
experiments,
check_ignore,
live,
machine,
data,
]
+37 -10
View File
@@ -1,13 +1,44 @@
import argparse
import logging
from dvc.cli import completion
from dvc.cli.actions import KeyValueArgs
from dvc.cli.command import CmdBase
from dvc.cli.utils import append_doc_link
from dvc.commands import completion
logger = logging.getLogger(__name__)
def _add_annotating_args(parser: argparse.ArgumentParser) -> None:
parser.add_argument(
"--desc",
type=str,
metavar="<text>",
help="User description of the data.",
)
parser.add_argument(
"--meta",
metavar="key=value",
nargs=1,
action=KeyValueArgs,
help="Custom metadata to add to the data.",
)
parser.add_argument(
"--label",
dest="labels",
type=str,
action="append",
metavar="<str>",
help="Label for the data.",
)
parser.add_argument(
"--type",
type=str,
metavar="<str>",
help="Type of the data.",
)
class CmdAdd(CmdBase):
def run(self):
from dvc.exceptions import (
@@ -28,6 +59,9 @@ class CmdAdd(CmdBase):
glob=self.args.glob,
desc=self.args.desc,
out=self.args.out,
type=self.args.type,
labels=self.args.labels,
meta=self.args.meta,
remote=self.args.remote,
to_remote=self.args.to_remote,
jobs=self.args.jobs,
@@ -109,15 +143,8 @@ def add_parser(subparsers, parent_parser):
),
metavar="<number>",
)
parser.add_argument(
"--desc",
type=str,
metavar="<text>",
help=(
"User description of the data (optional). "
"This doesn't affect any DVC operations."
),
)
_add_annotating_args(parser)
parser.add_argument(
"targets", nargs="+", help="Input files/directories to add."
).complete = completion.FILE
+1 -1
View File
@@ -1,7 +1,7 @@
import argparse
from dvc.cli import completion
from dvc.cli.utils import append_doc_link, fix_subparsers
from dvc.commands import completion
from dvc.commands.config import CmdConfig
from dvc.ui import ui
+1 -1
View File
@@ -1,8 +1,8 @@
import argparse
from dvc.cli import completion
from dvc.cli.command import CmdBase
from dvc.cli.utils import append_doc_link
from dvc.commands import completion
from dvc.ui import ui
+5 -1
View File
@@ -1,9 +1,9 @@
import argparse
import operator
from dvc.cli import completion
from dvc.cli.command import CmdBase
from dvc.cli.utils import append_doc_link
from dvc.commands import completion
from dvc.exceptions import CheckoutError
from dvc.ui import ui
@@ -55,6 +55,10 @@ class CmdCheckout(CmdBase):
if exc:
raise exc
if self.args.relink:
msg = "Relinked successfully"
ui.write(msg)
return 0
+1 -1
View File
@@ -1,9 +1,9 @@
import argparse
import logging
from dvc.cli import completion
from dvc.cli.command import CmdBase
from dvc.cli.utils import append_doc_link
from dvc.commands import completion
logger = logging.getLogger(__name__)
+3 -75
View File
@@ -1,92 +1,20 @@
import argparse
import logging
import shtab
from dvc.cli.command import CmdBaseNoRepo
from dvc.cli.completion import PREAMBLE
from dvc.cli.utils import append_doc_link
from dvc.ui import ui
logger = logging.getLogger(__name__)
FILE = shtab.FILE
DIR = shtab.DIRECTORY
PREAMBLE = {
"bash": """
# $1=COMP_WORDS[1]
_dvc_compgen_DVCFiles() {
compgen -d -S '/' -- $1 # recurse into subdirs
compgen -f -X '!*?.dvc' -- $1
compgen -f -X '!*Dvcfile' -- $1
compgen -f -X '!*dvc.yaml' -- $1
}
_dvc_compgen_stages() {
local _dvc_stages=($(dvc stage list -q --names-only))
compgen -W "${_dvc_stages[*]}" -- $1
}
_dvc_compgen_stages_and_files() {
_dvc_compgen_DVCFiles $1
_dvc_compgen_stages $1
}
_dvc_compgen_exps() {
local _dvc_exps=($(dvc exp list -q --all --names-only))
compgen -W "${_dvc_exps[*]}" -- $1
}
""",
"zsh": """
_dvc_compadd_DVCFiles() {
_files -g '(*?.dvc|Dvcfile|dvc.yaml)'
}
_dvc_compadd_stages() {
# this will also show up the description of the stages
_describe 'stages' "($(_dvc_stages_output))"
}
_dvc_stages_output() {
dvc stage list -q | awk '{
# escape possible `:` on the stage name
sub(/:/, "\\\\\\\\:", $1);
# read all of the columns except the first
# reading `out` from $2, so as not to have a leading whitespace
out=$2; for(i=3;i<=NF;i++){out=out" "$i};
# print key, ":" and then single-quote the description
# colon is a delimiter used by `_describe` to separate field/description
print $1":""\\047"out"\\047"
# single quote -> \\047
}'
}
_dvc_compadd_stages_and_files() {
_dvc_compadd_DVCFiles
_dvc_compadd_stages
}
_dvc_compadd_exps() {
_describe 'experiments' "($(dvc exp list -q -a --names-only))"
}
""",
}
DVC_FILE = {"bash": "_dvc_compgen_DVCFiles", "zsh": "_dvc_compadd_DVCFiles"}
STAGE = {"bash": "_dvc_compgen_stages", "zsh": "_dvc_compadd_stages"}
DVCFILES_AND_STAGE = {
"bash": "_dvc_compgen_stages_and_files",
"zsh": "_dvc_compadd_stages_and_files",
}
EXPERIMENT = {"bash": "_dvc_compgen_exps", "zsh": "_dvc_compadd_exps"}
class CmdCompletion(CmdBaseNoRepo):
def run(self):
from dvc.cli.parser import get_main_parser
import shtab
parser = get_main_parser()
shell = self.args.shell
parser = self.args.parser
script = shtab.complete(parser, shell=shell, preamble=PREAMBLE)
ui.write(script, force=True)
return 0
+1 -1
View File
@@ -1,6 +1,6 @@
from dvc.cli import completion
from dvc.cli.command import CmdBaseNoRepo
from dvc.cli.utils import fix_subparsers
from dvc.commands import completion
class CmdDaemonBase(CmdBaseNoRepo):
+63 -5
View File
@@ -1,11 +1,15 @@
import argparse
from typing import TYPE_CHECKING
from dvc.cli.command import CmdBase
from dvc.cli.utils import append_doc_link
from dvc.ui import ui
if TYPE_CHECKING:
from networkx import DiGraph
def _show_ascii(G):
def _show_ascii(G: "DiGraph"):
from dvc.dagascii import draw
from dvc.repo.graph import get_pipelines
@@ -18,16 +22,54 @@ def _show_ascii(G):
return "\n".join(ret)
def _show_dot(G):
def _quote_label(node):
label = str(node)
# Node names should not contain ":" unless they are quoted with "".
# See: https://github.com/pydot/pydot/issues/258.
if label[0] != '"' and label[-1] != '"':
return f'"{label}"'
return label
def _show_dot(G: "DiGraph"):
import io
import networkx as nx
from networkx.drawing.nx_pydot import write_dot
dot_file = io.StringIO()
write_dot(G, dot_file)
nx.relabel_nodes(G, _quote_label, copy=False)
write_dot(G.reverse(), dot_file)
return dot_file.getvalue()
def _show_mermaid(G, markdown: bool = False):
from dvc.repo.graph import get_pipelines
pipelines = get_pipelines(G)
graph = "flowchart TD"
total_nodes = 0
for pipeline in pipelines:
node_ids = {}
nodes = sorted(str(x) for x in pipeline.nodes)
for node in nodes:
total_nodes += 1
node_id = f"node{total_nodes}"
graph += f'\n\t{node_id}["{node}"]'
node_ids[node] = node_id
edges = sorted((str(a), str(b)) for b, a in pipeline.edges)
for a, b in edges:
graph += f"\n\t{node_ids[str(a)]}-->{node_ids[str(b)]}"
if markdown:
return f"```mermaid\n{graph}\n```"
return graph
def _collect_targets(repo, target, outs):
if not target:
return []
@@ -44,9 +86,9 @@ def _collect_targets(repo, target, outs):
targets.extend([str(out) for out in stage.outs])
continue
for out in outs_trie.itervalues(
for out in outs_trie.itervalues( # noqa: B301
prefix=repo.fs.path.parts(path)
): # noqa: B301
):
targets.extend(str(out))
return targets
@@ -105,6 +147,8 @@ class CmdDAG(CmdBase):
if self.args.dot:
ui.write(_show_dot(G))
elif self.args.mermaid or self.args.markdown:
ui.write(_show_mermaid(G, self.args.markdown))
else:
with ui.pager():
ui.write(_show_ascii(G))
@@ -127,6 +171,20 @@ def add_parser(subparsers, parent_parser):
default=False,
help="Print DAG with .dot format.",
)
dag_parser.add_argument(
"--mermaid",
action="store_true",
default=False,
help="Print DAG with mermaid format.",
)
dag_parser.add_argument(
"--md",
"--show-md",
action="store_true",
default=False,
dest="markdown",
help="Print DAG with mermaid format wrapped in Markdown block.",
)
dag_parser.add_argument(
"--full",
action="store_true",
+293
View File
@@ -0,0 +1,293 @@
import argparse
import logging
from operator import itemgetter
from typing import TYPE_CHECKING, Any, Dict, Iterable, Set
from funcy import chunks, compact, log_durations
from dvc.cli import completion
from dvc.cli.actions import CommaSeparatedArgs
from dvc.cli.command import CmdBase
from dvc.cli.utils import append_doc_link, fix_subparsers
from dvc.ui import ui
from dvc.utils import colorize
if TYPE_CHECKING:
from dvc.repo.data import Status as DataStatus
logger = logging.getLogger(__name__)
class CmdDataStatus(CmdBase):
COLORS = {
"not_in_cache": "red",
"committed": "green",
"uncommitted": "yellow",
"untracked": "cyan",
}
LABELS = {
"not_in_cache": "Not in cache",
"committed": "DVC committed changes",
"uncommitted": "DVC uncommitted changes",
"untracked": "Untracked files",
"unchanged": "DVC unchanged files",
}
HINTS = {
"not_in_cache": ('use "dvc fetch <file>..." to download files',),
"committed": (
"git commit the corresponding dvc files to update the repo",
),
"uncommitted": (
'use "dvc commit <file>..." to track changes',
'use "dvc checkout <file>..." to discard changes',
),
"untracked": (
'use "git add <file> ..." or '
'"dvc add <file>..." to commit to git or to dvc',
),
"git_dirty": (
"there are {}changes not tracked by dvc, "
'use "git status" to see',
),
}
@staticmethod
def _process_status(status: "DataStatus"):
"""Flatten stage status, and filter empty stage status contents."""
for stage, stage_status in status.items():
items = stage_status
if isinstance(stage_status, dict):
items = {
file: state
for state, files in stage_status.items()
for file in files
}
if not items:
continue
yield stage, items
@classmethod
def _show_status(cls, status: "DataStatus") -> int:
git_info = status.pop("git") # type: ignore[misc]
result = dict(cls._process_status(status))
if not result:
no_changes = "No changes"
if git_info.get("is_empty", False):
no_changes += " in an empty git repo"
ui.write(f"{no_changes}.")
for idx, (stage, stage_status) in enumerate(result.items()):
if idx:
ui.write()
label = cls.LABELS.get(stage, stage.capitalize() + " files")
header = f"{label}:"
color = cls.COLORS.get(stage, None)
ui.write(header)
if hints := cls.HINTS.get(stage):
for hint in hints:
ui.write(f" ({hint})")
if isinstance(stage_status, dict):
items = [
": ".join([state, file])
for file, state in stage_status.items()
]
else:
items = stage_status
tabs = "\t".expandtabs(8)
for chunk in chunks(1000, items):
out = "\n".join(tabs + item for item in chunk)
ui.write(colorize(out, color))
if (hints := cls.HINTS.get("git_dirty")) and git_info.get("is_dirty"):
for hint in hints:
message = hint.format("other " if result else "")
ui.write(f"[blue]({message})[/]", styled=True)
return 0
def run(self) -> int:
with log_durations(logger.trace, "in data_status"): # type: ignore
status = self.repo.data_status(
granular=self.args.granular,
untracked_files=self.args.untracked_files,
)
if not self.args.unchanged:
status.pop("unchanged") # type: ignore[misc]
if self.args.untracked_files == "no":
status.pop("untracked")
if self.args.json:
status.pop("git") # type: ignore[misc]
ui.write_json(compact(status))
return 0
return self._show_status(status)
class CmdDataLs(CmdBase):
@staticmethod
def _show_table(
d: Iterable[Dict[str, Any]],
filter_types: Set[str],
filter_labels: Set[str],
markdown: bool = False,
) -> None:
from rich.style import Style
from dvc.compare import TabularData
td = TabularData(
columns=["Path", "Type", "Labels", "Description"], fill_value="-"
)
for entry in sorted(d, key=itemgetter("path")):
typ = entry.get("type", "")
desc = entry.get("desc", "-")
labels = entry.get("labels", [])
if filter_types and typ not in filter_types:
continue
if filter_labels and filter_labels.isdisjoint(labels):
continue
rich_label = ui.rich_text()
for index, label in enumerate(labels):
if index:
rich_label.append(",")
style = Style(bold=label in filter_labels, color="green")
rich_label.append(label, style=style)
if markdown and desc:
desc = desc.partition("\n")[0]
path = ui.rich_text(entry["path"], style="cyan")
type_style = Style(bold=typ in filter_types, color="yellow")
typ = ui.rich_text(entry.get("type", ""), style=type_style)
td.append([path, typ or "-", rich_label or "-", desc])
td.render(markdown=markdown, rich_table=True)
def run(self):
from dvc.repo.data import ls
filter_labels = set(self.args.labels)
filter_types = set(self.args.type)
d = ls(
self.repo, targets=self.args.targets, recursive=self.args.recursive
)
self._show_table(
d,
filter_labels=filter_labels,
filter_types=filter_types,
markdown=self.args.markdown,
)
return 0
def add_parser(subparsers, parent_parser):
data_parser = subparsers.add_parser(
"data",
parents=[parent_parser],
formatter_class=argparse.RawDescriptionHelpFormatter,
)
data_subparsers = data_parser.add_subparsers(
dest="cmd",
help="Use `dvc data CMD --help` to display command-specific help.",
)
fix_subparsers(data_subparsers)
DATA_STATUS_HELP = (
"Show changes between the last git commit, "
"the dvcfiles and the workspace."
)
data_status_parser = data_subparsers.add_parser(
"status",
parents=[parent_parser],
description=append_doc_link(DATA_STATUS_HELP, "data/status"),
formatter_class=argparse.RawDescriptionHelpFormatter,
help=DATA_STATUS_HELP,
)
data_status_parser.add_argument(
"--json",
action="store_true",
default=False,
help="Show output in JSON format.",
)
data_status_parser.add_argument(
"--show-json",
action="store_true",
default=False,
dest="json",
help=argparse.SUPPRESS,
)
data_status_parser.add_argument(
"--granular",
action="store_true",
default=False,
help="Show granular file-level info for DVC-tracked directories.",
)
data_status_parser.add_argument(
"--unchanged",
action="store_true",
default=False,
help="Show unmodified DVC-tracked files.",
)
data_status_parser.add_argument(
"--untracked-files",
choices=["no", "all"],
default="no",
const="all",
nargs="?",
help="Show untracked files.",
)
data_status_parser.set_defaults(func=CmdDataStatus)
DATA_LS_HELP = "List data tracked by DVC with its metadata."
data_ls_parser = data_subparsers.add_parser(
"ls",
aliases=["list"],
parents=[parent_parser],
description=append_doc_link(DATA_LS_HELP, "data/ls"),
formatter_class=argparse.RawDescriptionHelpFormatter,
help=DATA_LS_HELP,
)
data_ls_parser.add_argument(
"--md",
"--show-md",
dest="markdown",
action="store_true",
default=False,
help="Show tabulated output in the Markdown format (GFM).",
)
data_ls_parser.add_argument(
"--type",
action=CommaSeparatedArgs,
default=[],
help="Comma-separated list of type to filter.",
)
data_ls_parser.add_argument(
"--labels",
action=CommaSeparatedArgs,
default=[],
help="Comma-separated list of labels to filter.",
)
data_ls_parser.add_argument(
"-R",
"--recursive",
action="store_true",
default=False,
help="Recursively list from the specified directories.",
)
data_ls_parser.add_argument(
"targets",
default=None,
nargs="*",
help=(
"Limit command scope to these tracked files/directories, "
".dvc files, or stage names."
),
).complete = completion.DVCFILES_AND_STAGE
data_ls_parser.set_defaults(func=CmdDataLs)
+3 -2
View File
@@ -1,9 +1,9 @@
import argparse
import logging
from dvc.cli import completion
from dvc.cli.command import CmdBase
from dvc.cli.utils import append_doc_link
from dvc.commands import completion
logger = logging.getLogger(__name__)
@@ -43,7 +43,8 @@ class CmdDataPull(CmdDataBase):
)
self.log_summary(stats)
except (CheckoutError, DvcException) as exc:
self.log_summary(getattr(exc, "stats", {}))
if stats := getattr(exc, "stats", {}):
self.log_summary(stats)
logger.exception("failed to pull data from the cloud")
return 1
+1 -1
View File
@@ -2,9 +2,9 @@ import argparse
import logging
import os
from dvc.cli import completion
from dvc.cli.command import CmdBase
from dvc.cli.utils import append_doc_link
from dvc.commands import completion
from dvc.ui import ui
logger = logging.getLogger(__name__)
+2
View File
@@ -15,6 +15,7 @@ from dvc.commands.experiments import (
ls,
pull,
push,
queue_worker,
remove,
run,
show,
@@ -30,6 +31,7 @@ SUB_COMMANDS = [
ls,
pull,
push,
queue_worker,
remove,
run,
show,
+1 -1
View File
@@ -1,9 +1,9 @@
import argparse
import logging
from dvc.cli import completion
from dvc.cli.command import CmdBase
from dvc.cli.utils import append_doc_link
from dvc.commands import completion
logger = logging.getLogger(__name__)
+1 -1
View File
@@ -29,6 +29,6 @@ def add_parser(experiments_subparsers, parent_parser):
"experiment", help="Experiment to be promoted."
)
experiments_branch_parser.add_argument(
"branch", help="Git branch name to use."
"branch", help="Name for the new Git branch"
)
experiments_branch_parser.set_defaults(func=CmdExperimentsBranch)
+2 -2
View File
@@ -1,9 +1,9 @@
import argparse
import logging
from dvc.cli import completion
from dvc.cli.command import CmdBase
from dvc.cli.utils import append_doc_link
from dvc.commands import completion
from dvc.commands.metrics import DEFAULT_PRECISION
from dvc.exceptions import DvcException
from dvc.ui import ui
@@ -27,7 +27,7 @@ class CmdExperimentsDiff(CmdBase):
if self.args.json:
ui.write_json(diff)
else:
elif diff:
from dvc.compare import show_diff
precision = self.args.precision or DEFAULT_PRECISION
+29 -8
View File
@@ -12,8 +12,8 @@ logger = logging.getLogger(__name__)
def _raise_error_if_all_disabled(**kwargs):
if not any(kwargs.values()):
raise InvalidArgumentError(
"Either of `-w|--workspace`, `-a|--all-branches`, `-T|--all-tags` "
"or `--all-commits` needs to be set."
"Either of `-w|--workspace`, `-a|--all-branches`, `-T|--all-tags`,"
" `--all-commits` or `--date` needs to be set."
)
@@ -23,6 +23,7 @@ class CmdExperimentsGC(CmdBase):
all_branches=self.args.all_branches,
all_tags=self.args.all_tags,
all_commits=self.args.all_commits,
commit_date=self.args.commit_date,
workspace=self.args.workspace,
)
@@ -31,13 +32,21 @@ class CmdExperimentsGC(CmdBase):
msg += "the workspace"
if self.args.all_commits:
msg += " and all git commits"
elif self.args.all_branches and self.args.all_tags:
msg += " and all git branches and tags"
elif self.args.all_branches:
msg += " and all git branches"
elif self.args.all_tags:
msg += " and all git tags"
else:
if self.args.all_branches and self.args.all_tags:
msg += " and all git branches and tags"
elif self.args.all_branches:
msg += " and all git branches"
elif self.args.all_tags:
msg += " and all git tags"
if self.args.commit_date:
msg += (
" and all git commits before date "
f"{self.args.commit_date}"
)
msg += " of the current repo."
if self.args.queued:
msg += " Run queued experiments will be preserved."
else:
@@ -54,6 +63,7 @@ class CmdExperimentsGC(CmdBase):
all_tags=self.args.all_tags,
all_commits=self.args.all_commits,
workspace=self.args.workspace,
commit_date=self.args.commit_date,
queued=self.args.queued,
)
@@ -110,6 +120,17 @@ def add_parser(experiments_subparsers, parent_parser):
default=False,
help="Keep experiments derived from all Git commits.",
)
experiments_gc_parser.add_argument(
"--date",
type=str,
dest="commit_date",
metavar="<YYYY-MM-DD>",
default=None,
help=(
"Keep experiments from the commits after (inclusive) a certain "
"date. Date must match the extended ISO 8601 format (YYYY-MM-DD)."
),
)
experiments_gc_parser.add_argument(
"--queued",
action="store_true",
+17 -9
View File
@@ -25,7 +25,6 @@ class CmdExperimentsInit(CmdBase):
DEFAULT_METRICS = "metrics.json"
DEFAULT_PARAMS = "params.yaml"
PLOTS = "plots"
DVCLIVE = "dvclive"
DEFAULTS = {
"code": CODE,
"data": DATA,
@@ -33,7 +32,6 @@ class CmdExperimentsInit(CmdBase):
"metrics": DEFAULT_METRICS,
"params": DEFAULT_PARAMS,
"plots": PLOTS,
"live": DVCLIVE,
}
def run(self):
@@ -63,7 +61,7 @@ class CmdExperimentsInit(CmdBase):
}
)
initialized_stage, initialized_deps = init(
initialized_stage, initialized_deps, initialized_out_dirs = init(
self.repo,
name=self.args.name,
type=self.args.type,
@@ -72,21 +70,32 @@ class CmdExperimentsInit(CmdBase):
interactive=self.args.interactive,
force=self.args.force,
)
self._post_init_display(initialized_stage, initialized_deps)
self._post_init_display(
initialized_stage, initialized_deps, initialized_out_dirs
)
if self.args.run:
self.repo.experiments.run(targets=[initialized_stage.addressing])
return 0
def _post_init_display(
self, stage: "PipelineStage", new_deps: List["Dependency"]
self,
stage: "PipelineStage",
new_deps: List["Dependency"],
new_out_dirs: List[str],
) -> None:
from dvc.utils import humanize
path_fmt = "[green]{0}[/green]".format
path_fmt = "[green]{}[/green]".format
if new_deps:
deps_paths = humanize.join(map(path_fmt, new_deps))
ui.write(f"Creating dependencies: {deps_paths}", styled=True)
if new_out_dirs:
out_dirs_paths = humanize.join(map(path_fmt, new_out_dirs))
ui.write(
f"Creating output directories: {out_dirs_paths}", styled=True
)
ui.write(
f"Creating [b]{self.args.name}[/b] stage in [green]dvc.yaml[/]",
styled=True,
@@ -190,12 +199,11 @@ def add_parser(experiments_subparsers, parent_parser):
)
experiments_init_parser.add_argument(
"--live",
help="Path to log dvclive outputs for your experiments"
f" (default: {CmdExperimentsInit.DVCLIVE})",
help="Path to log dvclive outputs for your experiments",
)
experiments_init_parser.add_argument(
"--type",
choices=["default", "dl"],
choices=["default", "checkpoint"],
default="default",
help="Select type of stage to create (default: %(default)s)",
)
+5 -4
View File
@@ -9,7 +9,7 @@ logger = logging.getLogger(__name__)
class CmdExperimentsList(CmdBase):
def run(self):
names_only = self.args.names_only
name_only = self.args.name_only
exps = self.repo.experiments.ls(
all_commits=self.args.all_commits,
rev=self.args.rev,
@@ -23,10 +23,10 @@ class CmdExperimentsList(CmdBase):
if branch:
tag = branch.split("/")[-1]
name = tag if tag else baseline[:7]
if not names_only:
if not name_only:
print(f"{name}:")
for exp_name in exps[baseline]:
indent = "" if names_only else "\t"
indent = "" if name_only else "\t"
print(f"{indent}{exp_name}")
return 0
@@ -45,6 +45,7 @@ def add_parser(experiments_subparsers, parent_parser):
)
add_rev_selection_flags(experiments_list_parser, "List")
experiments_list_parser.add_argument(
"--name-only",
"--names-only",
action="store_true",
help="Only output experiment names (without parent commits).",
@@ -58,6 +59,6 @@ def add_parser(experiments_subparsers, parent_parser):
"If provided, experiments from the specified Git repository "
" will be listed instead of local ones."
),
metavar="[<git_remote>]",
metavar="<git_remote>",
)
experiments_list_parser.set_defaults(func=CmdExperimentsList)
+1 -1
View File
@@ -1,9 +1,9 @@
import argparse
import logging
from dvc.cli import completion
from dvc.cli.command import CmdBase
from dvc.cli.utils import append_doc_link
from dvc.commands import completion
from dvc.exceptions import InvalidArgumentError
from dvc.ui import ui
+25
View File
@@ -0,0 +1,25 @@
import logging
from dvc.cli.command import CmdBase
logger = logging.getLogger(__name__)
class CmdQueueWorker(CmdBase):
"""Run the exp queue worker."""
def run(self):
self.repo.experiments.celery_queue.worker.start(self.args.name)
return 0
def add_parser(experiments_subparsers, parent_parser):
QUEUE_WORKER_HELP = "Run the exp queue worker."
parser = experiments_subparsers.add_parser(
"queue-worker",
parents=[parent_parser],
description=QUEUE_WORKER_HELP,
add_help=False,
)
parser.add_argument("name", help="Celery worker name.")
parser.set_defaults(func=CmdQueueWorker)
+4 -5
View File
@@ -10,23 +10,22 @@ logger = logging.getLogger(__name__)
class CmdExperimentsRemove(CmdBase):
def raise_error_if_all_disabled(self):
def check_arguments(self):
if not any(
[
self.args.experiment,
self.args.all_commits,
self.args.rev,
self.args.queue,
]
):
) ^ bool(self.args.experiment):
raise InvalidArgumentError(
"Either provide an `experiment` argument, or use the "
"`--rev` or `--all-commits` flag."
"`--rev` or `--all-commits` or `--queue` flag."
)
def run(self):
self.raise_error_if_all_disabled()
self.check_arguments()
removed_list = self.repo.experiments.remove(
exp_names=self.args.experiment,
+1 -1
View File
@@ -1,8 +1,8 @@
import argparse
import logging
from dvc.cli import completion
from dvc.cli.utils import append_doc_link
from dvc.commands import completion
from dvc.commands.repro import CmdRepro
from dvc.commands.repro import add_arguments as add_repro_arguments
from dvc.exceptions import InvalidArgumentError
+10 -3
View File
@@ -8,9 +8,9 @@ from typing import TYPE_CHECKING
from funcy import lmap
from dvc.cli import completion
from dvc.cli.command import CmdBase
from dvc.cli.utils import append_doc_link
from dvc.commands import completion
from dvc.commands.metrics import DEFAULT_PRECISION
from dvc.exceptions import DvcException, InvalidArgumentError
from dvc.ui import ui
@@ -138,7 +138,7 @@ def _collect_rows(
row_dict["Experiment"] = exp.get("name", "")
row_dict["rev"] = name_rev
row_dict["typ"] = typ
row_dict["Created"] = _format_time(
row_dict["Created"] = format_time(
exp.get("timestamp"), fill_value, iso
)
row_dict["parent"] = parent
@@ -218,7 +218,7 @@ def _sort_exp(experiments, sort_path, sort_name, typ, reverse):
return ret
def _format_time(datetime_obj, fill_value=FILL_VALUE, iso=False):
def format_time(datetime_obj, fill_value=FILL_VALUE, iso=False):
if datetime_obj is None:
return fill_value
@@ -480,6 +480,7 @@ class CmdExperimentsShow(CmdBase):
num=self.args.num,
sha_only=self.args.sha,
param_deps=self.args.param_deps,
fetch_running=self.args.fetch_running,
)
except DvcException:
logger.exception("failed to show experiments")
@@ -645,4 +646,10 @@ def add_parser(experiments_subparsers, parent_parser):
default=False,
help="Open the Parallel Coordinates Plot directly in the browser.",
)
experiments_show_parser.add_argument(
"--no-fetch",
dest="fetch_running",
action="store_false",
help=argparse.SUPPRESS,
)
experiments_show_parser.set_defaults(func=CmdExperimentsShow)
+2 -2
View File
@@ -1,9 +1,9 @@
import argparse
import logging
from dvc.cli import completion
from dvc.cli.command import CmdBase
from dvc.cli.utils import append_doc_link
from dvc.commands import completion
from dvc.exceptions import DvcException
logger = logging.getLogger(__name__)
@@ -16,7 +16,7 @@ class CmdFreezeBase(CmdBase):
try:
func(target)
except DvcException:
logger.exception(f"failed to {name} '{target}'")
logger.exception("failed to %s '%s'", name, target)
ret = 1
return ret
+62 -10
View File
@@ -11,29 +11,46 @@ logger = logging.getLogger(__name__)
class CmdGC(CmdBase):
def run(self):
from dvc.repo.gc import _raise_error_if_all_disabled
from dvc.repo.gc import _validate_args
_raise_error_if_all_disabled(
_validate_args(
all_branches=self.args.all_branches,
all_tags=self.args.all_tags,
all_commits=self.args.all_commits,
all_experiments=self.args.all_experiments,
commit_date=self.args.commit_date,
workspace=self.args.workspace,
rev=self.args.rev,
num=self.args.num,
)
if self.args.rev:
self.args.num = self.args.num or 1
msg = "This will remove all cache except items used in "
msg += "the workspace"
if self.args.all_commits:
msg += " and all git commits"
elif self.args.all_branches and self.args.all_tags:
msg += " and all git branches and tags"
elif self.args.all_branches:
msg += " and all git branches"
elif self.args.all_tags:
msg += " and all git tags"
elif self.args.all_experiments:
msg += " and all experiments"
else:
if self.args.all_branches and self.args.all_tags:
msg += " and all git branches and tags"
elif self.args.all_branches:
msg += " and all git branches"
elif self.args.all_tags:
msg += " and all git tags"
if self.args.commit_date:
msg += (
" and all git commits before date "
f"{self.args.commit_date}"
)
if self.args.rev:
msg += (
f" and last {self.args.num} commits from {self.args.rev}"
)
if self.args.all_experiments:
msg += " and all experiments"
if self.args.repos:
msg += " of the current and the following repos:"
@@ -53,12 +70,15 @@ class CmdGC(CmdBase):
all_tags=self.args.all_tags,
all_commits=self.args.all_commits,
all_experiments=self.args.all_experiments,
commit_date=self.args.commit_date,
cloud=self.args.cloud,
remote=self.args.remote,
force=self.args.force,
jobs=self.args.jobs,
repos=self.args.repos,
workspace=self.args.workspace,
rev=self.args.rev,
num=self.args.num,
)
return 0
@@ -83,6 +103,26 @@ def add_parser(subparsers, parent_parser):
default=False,
help="Keep data files used in the current workspace.",
)
gc_parser.add_argument(
"--rev",
type=str,
default=None,
help="Keep data files used in the specified <commit>.",
metavar="<commit>",
)
gc_parser.add_argument(
"-n",
"--num",
type=int,
dest="num",
metavar="<num>",
help=(
"Keep data files used in the last `num` commits "
"starting from the `--rev` <commit>. "
"Only used if `--rev` is also provided. "
"Defaults to `1`."
),
)
gc_parser.add_argument(
"-a",
"--all-branches",
@@ -104,6 +144,18 @@ def add_parser(subparsers, parent_parser):
default=False,
help="Keep data files for all Git commits.",
)
gc_parser.add_argument(
"--date",
type=str,
dest="commit_date",
metavar="<YYYY-MM-DD>",
default=None,
help=(
"Keep cached data referenced in the commits after ( inclusive )"
" a certain time. Date must match the extended ISO 8601 format "
"(YYYY-MM-DD)."
),
)
gc_parser.add_argument(
"--all-experiments",
action="store_true",
+1 -1
View File
@@ -1,11 +1,11 @@
import argparse
import logging
from dvc.cli import completion
from dvc.cli.command import CmdBaseNoRepo
from dvc.exceptions import DvcException
from ..cli.utils import append_doc_link
from . import completion
logger = logging.getLogger(__name__)
+2 -2
View File
@@ -1,11 +1,11 @@
import argparse
import logging
from dvc.cli import completion
from dvc.cli.command import CmdBaseNoRepo
from dvc.exceptions import DvcException
from ..cli.utils import append_doc_link
from . import completion
logger = logging.getLogger(__name__)
@@ -18,7 +18,7 @@ class CmdGetUrl(CmdBaseNoRepo):
Repo.get_url(self.args.url, out=self.args.out, jobs=self.args.jobs)
return 0
except DvcException:
logger.exception(f"failed to get '{self.args.url}'")
logger.exception("failed to get '%s'", self.args.url)
return 1
+18 -11
View File
@@ -1,9 +1,9 @@
import argparse
import logging
from dvc.cli import completion
from dvc.cli.command import CmdBase
from dvc.cli.utils import append_doc_link
from dvc.commands import completion
from dvc.exceptions import DvcException
logger = logging.getLogger(__name__)
@@ -19,7 +19,11 @@ class CmdImport(CmdBase):
fname=self.args.file,
rev=self.args.rev,
no_exec=self.args.no_exec,
no_download=self.args.no_download,
desc=self.args.desc,
type=self.args.type,
labels=self.args.labels,
meta=self.args.meta,
jobs=self.args.jobs,
)
except DvcException:
@@ -33,6 +37,8 @@ class CmdImport(CmdBase):
def add_parser(subparsers, parent_parser):
from .add import _add_annotating_args
IMPORT_HELP = (
"Download file or directory tracked by DVC or by Git "
"into the workspace, and track it."
@@ -69,20 +75,19 @@ def add_parser(subparsers, parent_parser):
help="Specify name of the .dvc file this command will generate.",
metavar="<filename>",
)
import_parser.add_argument(
no_download_exec_group = import_parser.add_mutually_exclusive_group()
no_download_exec_group.add_argument(
"--no-exec",
action="store_true",
default=False,
help="Only create .dvc file without actually downloading it.",
help="Only create .dvc file without actually importing target data.",
)
import_parser.add_argument(
"--desc",
type=str,
metavar="<text>",
help=(
"User description of the data (optional). "
"This doesn't affect any DVC operations."
),
no_download_exec_group.add_argument(
"--no-download",
action="store_true",
default=False,
help="Create .dvc file including target data hash value(s)"
" but do not actually download the file(s).",
)
import_parser.add_argument(
"-j",
@@ -94,4 +99,6 @@ def add_parser(subparsers, parent_parser):
),
metavar="<number>",
)
_add_annotating_args(import_parser)
import_parser.set_defaults(func=CmdImport)
+18 -12
View File
@@ -1,9 +1,9 @@
import argparse
import logging
from dvc.cli import completion
from dvc.cli.command import CmdBase
from dvc.cli.utils import append_doc_link
from dvc.commands import completion
from dvc.exceptions import DvcException
logger = logging.getLogger(__name__)
@@ -17,9 +17,13 @@ class CmdImportUrl(CmdBase):
out=self.args.out,
fname=self.args.file,
no_exec=self.args.no_exec,
no_download=self.args.no_download,
remote=self.args.remote,
to_remote=self.args.to_remote,
desc=self.args.desc,
type=self.args.type,
labels=self.args.labels,
meta=self.args.meta,
jobs=self.args.jobs,
)
except DvcException:
@@ -34,6 +38,8 @@ class CmdImportUrl(CmdBase):
def add_parser(subparsers, parent_parser):
from .add import _add_annotating_args
IMPORT_HELP = (
"Download or copy file from URL and take it under DVC control."
)
@@ -66,11 +72,19 @@ def add_parser(subparsers, parent_parser):
help="Specify name of the .dvc file this command will generate.",
metavar="<filename>",
).complete = completion.DIR
import_parser.add_argument(
no_download_exec_group = import_parser.add_mutually_exclusive_group()
no_download_exec_group.add_argument(
"--no-exec",
action="store_true",
default=False,
help="Only create .dvc file without actually downloading it.",
help="Only create .dvc file without actually importing target data.",
)
no_download_exec_group.add_argument(
"--no-download",
action="store_true",
default=False,
help="Create .dvc file including target data hash value(s)"
" but do not actually download the file(s).",
)
import_parser.add_argument(
"--to-remote",
@@ -94,13 +108,5 @@ def add_parser(subparsers, parent_parser):
),
metavar="<number>",
)
import_parser.add_argument(
"--desc",
type=str,
metavar="<text>",
help=(
"User description of the data (optional). "
"This doesn't affect any DVC operations."
),
)
_add_annotating_args(import_parser)
import_parser.set_defaults(func=CmdImportUrl)
-101
View File
@@ -1,101 +0,0 @@
import argparse
from dvc.cli.command import CmdBase
from dvc.cli.utils import fix_subparsers
from dvc.commands import completion
from dvc.ui import ui
class CmdLive(CmdBase):
UNINITIALIZED = True
def _run(self, target, revs=None):
from dvc_render import render_html
from dvc.render.match import match_renderers
metrics, plots = self.repo.live.show(target=target, revs=revs)
if plots:
from pathlib import Path
output = Path.cwd() / (self.args.target + "_html") / "index.html"
renderers = match_renderers(
plots, templates_dir=self.repo.plots.templates_dir
)
index_path = render_html(renderers, output, metrics)
ui.write(index_path.as_uri())
return 0
return 1
class CmdLiveShow(CmdLive):
def run(self):
return self._run(self.args.target)
class CmdLiveDiff(CmdLive):
def run(self):
return self._run(self.args.target, self.args.revs)
def shared_parent_parser():
parent_parser = argparse.ArgumentParser(add_help=False)
parent_parser.add_argument(
"target", help="Logs dir to produce summary from"
).complete = completion.DIR
parent_parser.add_argument(
"-o",
"--out",
default=None,
help="Destination path to save plots to",
metavar="<path>",
).complete = completion.DIR
return parent_parser
def add_parser(subparsers, parent_parser):
LIVE_DESCRIPTION = (
"Commands to visualize and compare dvclive-produced logs."
)
live_parser = subparsers.add_parser(
"live",
parents=[parent_parser],
formatter_class=argparse.RawDescriptionHelpFormatter,
description=LIVE_DESCRIPTION,
)
live_subparsers = live_parser.add_subparsers(
dest="cmd",
help="Use `dvc live CMD --help` to display command-specific help.",
)
fix_subparsers(live_subparsers)
SHOW_HELP = "Visualize dvclive directory content."
live_show_parser = live_subparsers.add_parser(
"show",
parents=[parent_parser, shared_parent_parser()],
help=SHOW_HELP,
formatter_class=argparse.RawDescriptionHelpFormatter,
)
live_show_parser.set_defaults(func=CmdLiveShow)
DIFF_HELP = (
"Show multiple versions of dvclive data, "
"by plotting it in single view."
)
live_diff_parser = live_subparsers.add_parser(
"diff",
parents=[parent_parser, shared_parent_parser()],
help=DIFF_HELP,
formatter_class=argparse.RawDescriptionHelpFormatter,
)
live_diff_parser.add_argument(
"--revs",
nargs="*",
default=None,
help="Git revision (e.g. SHA, branch, tag)",
metavar="<commit>",
)
live_diff_parser.set_defaults(func=CmdLiveDiff)
+2 -2
View File
@@ -1,9 +1,9 @@
import argparse
import logging
from dvc.cli import completion
from dvc.cli.command import CmdBaseNoRepo
from dvc.cli.utils import append_doc_link
from dvc.commands import completion
from dvc.commands.ls.ls_colors import LsColors
from dvc.exceptions import DvcException
from dvc.ui import ui
@@ -42,7 +42,7 @@ class CmdList(CmdBaseNoRepo):
ui.write("\n".join(entries))
return 0
except DvcException:
logger.exception(f"failed to list '{self.args.url}'")
logger.exception("failed to list '%s'", self.args.url)
return 1
+1 -1
View File
@@ -1,9 +1,9 @@
import argparse
import logging
from dvc.cli import completion
from dvc.cli.command import CmdBase
from dvc.cli.utils import append_doc_link, fix_subparsers
from dvc.commands import completion
from dvc.exceptions import DvcException
from dvc.ui import ui
from dvc.utils.serialize import encode_exception
+1 -1
View File
@@ -1,9 +1,9 @@
import argparse
import logging
from dvc.cli import completion
from dvc.cli.command import CmdBase
from dvc.cli.utils import append_doc_link
from dvc.commands import completion
from dvc.exceptions import DvcException
logger = logging.getLogger(__name__)
+1 -1
View File
@@ -1,9 +1,9 @@
import argparse
import logging
from dvc.cli import completion
from dvc.cli.command import CmdBase
from dvc.cli.utils import append_doc_link, fix_subparsers
from dvc.commands import completion
from dvc.exceptions import DvcException
from dvc.ui import ui
+153 -80
View File
@@ -5,9 +5,9 @@ import os
from funcy import first
from dvc.cli import completion
from dvc.cli.command import CmdBase
from dvc.cli.utils import append_doc_link, fix_subparsers
from dvc.commands import completion
from dvc.exceptions import DvcException
from dvc.ui import ui
from dvc.utils import format_link
@@ -21,8 +21,61 @@ def _show_json(renderers, split=False):
result = {
renderer.name: to_json(renderer, split) for renderer in renderers
}
if result:
ui.write_json(result)
ui.write_json(result)
def _adjust_vega_renderers(renderers):
from dvc.render import VERSION_FIELD
from dvc_render import VegaRenderer
for r in renderers:
if isinstance(r, VegaRenderer):
if _data_versions_count(r) > 1:
summary = _summarize_version_infos(r)
for dp in r.datapoints:
vi = dp.pop(VERSION_FIELD, {})
keys = list(vi.keys())
for key in keys:
if not (len(summary.get(key, set())) > 1):
vi.pop(key)
if vi:
dp["rev"] = "::".join(vi.values())
else:
for dp in r.datapoints:
dp.pop(VERSION_FIELD, {})
def _summarize_version_infos(renderer):
from collections import defaultdict
from dvc.render import VERSION_FIELD
result = defaultdict(set)
for dp in renderer.datapoints:
for key, value in dp.get(VERSION_FIELD, {}).items():
result[key].add(value)
return dict(result)
def _data_versions_count(renderer):
from itertools import product
summary = _summarize_version_infos(renderer)
x = product(summary.get("filename", {None}), summary.get("field", {None}))
return len(set(x))
def _filter_unhandled_renderers(renderers):
# filtering out renderers currently unhandled by vscode extension
from dvc_render import VegaRenderer
def _is_json_viable(r):
return not (
isinstance(r, VegaRenderer) and _data_versions_count(r) > 1
)
return list(filter(_is_json_viable, renderers))
class CmdPlots(CmdBase):
@@ -36,13 +89,30 @@ class CmdPlots(CmdBase):
props = {p: getattr(self.args, p) for p in PLOT_PROPS}
return {k: v for k, v in props.items() if v is not None}
def _config_files(self):
config_files = None
if self.args.from_config:
config_files = {self.args.from_config}
return config_files
def _html_template_path(self):
html_template_path = self.args.html_template
if not html_template_path:
html_template_path = self.repo.config.get("plots", {}).get(
"html_template", None
)
if html_template_path and not os.path.isabs(html_template_path):
html_template_path = os.path.join(
self.repo.dvc_dir, html_template_path
)
return html_template_path
def run(self):
from pathlib import Path
from dvc.render.match import match_defs_renderers
from dvc_render import render_html
from dvc.render.match import match_renderers
if self.args.show_vega:
if not self.args.targets:
logger.error("please specify a target for `--show-vega`")
@@ -60,9 +130,10 @@ class CmdPlots(CmdBase):
return 1
try:
plots_data = self._func(
targets=self.args.targets, props=self._props()
targets=self.args.targets,
props=self._props(),
config_files=self._config_files(),
)
if not plots_data:
@@ -71,50 +142,51 @@ class CmdPlots(CmdBase):
"visualization file will not be created."
)
renderers = match_renderers(
plots_data=plots_data, out=self.args.out
out: str = self.args.out or self.repo.config.get("plots", {}).get(
"out_dir", "dvc_plots"
)
renderers_out = (
out if self.args.json else os.path.join(out, "static")
)
renderers = match_defs_renderers(
data=plots_data,
out=renderers_out,
templates_dir=self.repo.plots.templates_dir,
)
if self.args.json:
renderers = _filter_unhandled_renderers(renderers)
_show_json(renderers, self.args.split)
return 0
_adjust_vega_renderers(renderers)
if self.args.show_vega:
renderer = first(filter(lambda r: r.TYPE == "vega", renderers))
if renderer:
ui.write_json(json.loads(renderer.get_filled_template()))
return 0
if self.args.json:
_show_json(renderers, self.args.split)
return 0
html_template_path = self.args.html_template
if not html_template_path:
html_template_path = self.repo.config.get("plots", {}).get(
"html_template", None
output_file: Path = (Path.cwd() / out).resolve() / "index.html"
if renderers:
render_html(
renderers=renderers,
output_file=output_file,
template_path=self._html_template_path(),
)
if html_template_path and not os.path.isabs(
html_template_path
):
html_template_path = os.path.join(
self.repo.dvc_dir, html_template_path
)
rel: str = self.args.out or "dvc_plots"
output_file: Path = (Path.cwd() / rel).resolve() / "index.html"
render_html(
renderers=renderers,
output_file=output_file,
template_path=html_template_path,
)
ui.write(output_file.as_uri())
auto_open = self.repo.config["plots"].get("auto_open", False)
if self.args.open or auto_open:
if not auto_open:
ui.write(
"To enable auto opening, you can run:\n"
"\n"
"\tdvc config plots.auto_open true"
)
return ui.open_browser(output_file)
ui.write(output_file.as_uri())
auto_open = self.repo.config["plots"].get("auto_open", False)
if self.args.open or auto_open:
if not auto_open:
ui.write(
"To enable auto opening, you can run:\n"
"\n"
"\tdvc config plots.auto_open true"
)
return ui.open_browser(output_file)
return 0
@@ -151,29 +223,22 @@ class CmdPlotsModify(CmdPlots):
class CmdPlotsTemplates(CmdBase):
TEMPLATES_CHOICES = [
"simple",
"linear",
"confusion",
"confusion_normalized",
"scatter",
"smooth",
]
def run(self):
from dvc_render.vega_templates import dump_templates
from dvc.exceptions import InvalidArgumentError
from dvc_render.vega_templates import TEMPLATES
try:
out = (
os.path.join(os.getcwd(), self.args.out)
if self.args.out
else self.repo.plots.templates_dir
)
target = self.args.template
if target:
for template in TEMPLATES:
if target == template.DEFAULT_NAME:
ui.write_json(template.DEFAULT_CONTENT)
return 0
raise InvalidArgumentError(f"Unexpected template: {target}.")
targets = [self.args.target] if self.args.target else None
dump_templates(output=out, targets=targets)
templates_path = os.path.relpath(out, os.getcwd())
ui.write(f"Templates have been written into '{templates_path}'.")
else:
for template in TEMPLATES:
ui.write(template.DEFAULT_NAME)
return 0
except DvcException:
@@ -182,10 +247,7 @@ class CmdPlotsTemplates(CmdBase):
def add_parser(subparsers, parent_parser):
PLOTS_HELP = (
"Commands to visualize and compare plot metrics in structured files "
"(JSON, YAML, CSV, TSV)."
)
PLOTS_HELP = "Commands to visualize and compare plot data."
plots_parser = subparsers.add_parser(
"plots",
@@ -201,7 +263,10 @@ def add_parser(subparsers, parent_parser):
fix_subparsers(plots_subparsers)
SHOW_HELP = "Generate plots from metrics files."
SHOW_HELP = (
"Generate plots from target files or from `plots`"
" definitions in `dvc.yaml`."
)
plots_show_parser = plots_subparsers.add_parser(
"show",
parents=[parent_parser],
@@ -212,9 +277,10 @@ def add_parser(subparsers, parent_parser):
plots_show_parser.add_argument(
"targets",
nargs="*",
help="Files to visualize (supports any file, "
"even when not found as `plots` in `dvc.yaml`). "
"Shows all plots by default.",
help=(
"Plots files or plot IDs from `dvc.yaml` to visualize. "
"Shows all plots by default."
),
).complete = completion.FILE
_add_props_arguments(plots_show_parser)
_add_output_argument(plots_show_parser)
@@ -222,8 +288,8 @@ def add_parser(subparsers, parent_parser):
plots_show_parser.set_defaults(func=CmdPlotsShow)
PLOTS_DIFF_HELP = (
"Show multiple versions of plot metrics "
"by plotting them in a single image."
"Show multiple versions of a plot by overlaying them "
"in a single image."
)
plots_diff_parser = plots_subparsers.add_parser(
"diff",
@@ -236,8 +302,8 @@ def add_parser(subparsers, parent_parser):
"--targets",
nargs="*",
help=(
"Specific plots file(s) to visualize "
"(even if not found as `plots` in `dvc.yaml`). "
"Specific plots to visualize. "
"Accepts any file path or plot name from `dvc.yaml` file. "
"Shows all tracked plots by default."
),
metavar="<paths>",
@@ -259,7 +325,7 @@ def add_parser(subparsers, parent_parser):
PLOTS_MODIFY_HELP = (
"Modify display properties of data-series plots "
"(has no effect on image-type plots)."
"defined in stages (has no effect on image plots)."
)
plots_modify_parser = plots_subparsers.add_parser(
"modify",
@@ -269,7 +335,8 @@ def add_parser(subparsers, parent_parser):
formatter_class=argparse.RawDescriptionHelpFormatter,
)
plots_modify_parser.add_argument(
"target", help="Metric file to set properties to"
"target",
help="Plots file to set properties for (defined at the stage level).",
).complete = completion.FILE
_add_props_arguments(plots_modify_parser)
plots_modify_parser.add_argument(
@@ -281,8 +348,7 @@ def add_parser(subparsers, parent_parser):
plots_modify_parser.set_defaults(func=CmdPlotsModify)
TEMPLATES_HELP = (
"Write built-in plots templates to a directory "
"(.dvc/plots by default)."
"List built-in plots templates or show JSON specification for one."
)
plots_templates_parser = plots_subparsers.add_parser(
"templates",
@@ -292,13 +358,14 @@ def add_parser(subparsers, parent_parser):
formatter_class=argparse.RawDescriptionHelpFormatter,
)
plots_templates_parser.add_argument(
"target",
"template",
default=None,
nargs="?",
choices=CmdPlotsTemplates.TEMPLATES_CHOICES,
help="Template to write. Writes all templates by default.",
help=(
"Template for which to show JSON specification. "
"List all template names by default."
),
)
_add_output_argument(plots_templates_parser, typ="templates")
plots_templates_parser.set_defaults(func=CmdPlotsTemplates)
@@ -379,3 +446,9 @@ def _add_ui_arguments(parser):
help="Custom HTML template for VEGA visualization.",
metavar="<path>",
)
parser.add_argument(
"--from-config",
default=None,
metavar="<path>",
help=argparse.SUPPRESS,
)
+34
View File
@@ -0,0 +1,34 @@
import argparse
from dvc.cli.utils import append_doc_link, fix_subparsers
from dvc.commands.queue import kill, logs, remove, start, status, stop
SUB_COMMANDS = [
start,
stop,
status,
logs,
remove,
kill,
]
def add_parser(subparsers, parent_parser):
QUEUE_HELP = "Commands to manage experiments queue."
queue_parser = subparsers.add_parser(
"queue",
parents=[parent_parser],
description=append_doc_link(QUEUE_HELP, "queue"),
formatter_class=argparse.RawDescriptionHelpFormatter,
help=QUEUE_HELP,
)
queue_subparsers = queue_parser.add_subparsers(
dest="cmd",
help="Use `dvc queue CMD --help` to display " "command-specific help.",
)
fix_subparsers(queue_subparsers)
for cmd in SUB_COMMANDS:
cmd.add_parser(queue_subparsers, parent_parser)
+34
View File
@@ -0,0 +1,34 @@
import argparse
import logging
from dvc.cli.command import CmdBase
from dvc.cli.utils import append_doc_link
logger = logging.getLogger(__name__)
class CmdQueueKill(CmdBase):
"""Kill exp task in queue."""
def run(self):
self.repo.experiments.celery_queue.kill(revs=self.args.task)
return 0
def add_parser(queue_subparsers, parent_parser):
QUEUE_KILL_HELP = "Kill actively running experiment queue tasks."
queue_kill_parser = queue_subparsers.add_parser(
"kill",
parents=[parent_parser],
description=append_doc_link(QUEUE_KILL_HELP, "queue/kill"),
help=QUEUE_KILL_HELP,
formatter_class=argparse.RawDescriptionHelpFormatter,
)
queue_kill_parser.add_argument(
"task",
nargs="*",
help="Tasks in queue to kill.",
metavar="<task>",
)
queue_kill_parser.set_defaults(func=CmdQueueKill)
+56
View File
@@ -0,0 +1,56 @@
import argparse
import logging
from dvc.cli.command import CmdBase
from dvc.cli.utils import append_doc_link
logger = logging.getLogger(__name__)
class CmdQueueLogs(CmdBase):
"""Show output logs for a queued experiment."""
def run(self):
self.repo.experiments.celery_queue.logs(
rev=self.args.task,
encoding=self.args.encoding,
follow=self.args.follow,
)
return 0
def add_parser(queue_subparsers, parent_parser):
QUEUE_LOGS_HELP = (
"Show output logs for running and completed experiment queue tasks."
)
queue_logs_parser = queue_subparsers.add_parser(
"logs",
parents=[parent_parser],
description=append_doc_link(QUEUE_LOGS_HELP, "queue/logs"),
help=QUEUE_LOGS_HELP,
formatter_class=argparse.RawDescriptionHelpFormatter,
)
queue_logs_parser.add_argument(
"-e",
"--encoding",
help=(
"Text encoding for log output. Defaults to system locale encoding."
),
metavar="<encoding>",
)
queue_logs_parser.add_argument(
"-f",
"--follow",
help=(
"Attach to task and follow additional live output. Only "
"applicable if the task is still running."
),
action="store_true",
)
queue_logs_parser.add_argument(
"task",
help="Task to show.",
metavar="<task>",
)
queue_logs_parser.set_defaults(func=CmdQueueLogs)
+95
View File
@@ -0,0 +1,95 @@
import argparse
import logging
from dvc.cli.command import CmdBase
from dvc.cli.utils import append_doc_link
from dvc.exceptions import InvalidArgumentError
from dvc.ui import ui
logger = logging.getLogger(__name__)
class CmdQueueRemove(CmdBase):
"""Remove exp in queue."""
def check_arguments(self):
clear_flag = any(
[
self.args.all,
self.args.queued,
self.args.failed,
self.args.success,
]
)
if not (clear_flag ^ bool(self.args.task)):
raise InvalidArgumentError(
"Either provide an `tasks` argument, or use the "
"`--all`, `--queued`, `--failed`, `--success` flag."
)
def run(self):
self.check_arguments()
if self.args.all:
self.args.queued = True
self.args.failed = True
self.args.success = True
if self.args.queued or self.args.failed or self.args.success:
removed_list = self.repo.experiments.celery_queue.clear(
success=self.args.success,
queued=self.args.queued,
failed=self.args.failed,
)
else:
removed_list = self.repo.experiments.celery_queue.remove(
revs=self.args.task,
)
if removed_list:
removed = ", ".join(removed_list)
ui.write(f"Removed tasks in queue: {removed}")
else:
ui.write(f"No tasks found named {self.args.task}")
return 0
def add_parser(queue_subparsers, parent_parser):
QUEUE_REMOVE_HELP = "Remove queued and completed tasks from the queue."
queue_remove_parser = queue_subparsers.add_parser(
"remove",
parents=[parent_parser],
description=append_doc_link(QUEUE_REMOVE_HELP, "queue/remove"),
help=QUEUE_REMOVE_HELP,
formatter_class=argparse.RawDescriptionHelpFormatter,
)
queue_remove_parser.add_argument(
"--all",
action="store_true",
help="Remove all queued and completed tasks from the queue.",
)
queue_remove_parser.add_argument(
"--queued",
action="store_true",
help="Remove all queued tasks from the queue.",
)
queue_remove_parser.add_argument(
"--success",
action="store_true",
help="Remove all successful tasks from the queue.",
)
queue_remove_parser.add_argument(
"--failed",
action="store_true",
help="Remove all failed tasks from the queue.",
)
queue_remove_parser.add_argument(
"task",
nargs="*",
help="Tasks to remove.",
metavar="<task>",
)
queue_remove_parser.set_defaults(func=CmdQueueRemove)
+48
View File
@@ -0,0 +1,48 @@
import argparse
import logging
from dvc.cli.command import CmdBase
from dvc.cli.utils import append_doc_link
from dvc.ui import ui
logger = logging.getLogger(__name__)
class CmdQueueStart(CmdBase):
"""Start exp queue workers."""
def run(self):
started = self.repo.experiments.celery_queue.start_workers(
self.args.jobs
)
suffix = "s" if started > 1 else ""
ui.write(
f"Started '{started}' new experiments task queue worker{suffix}."
)
return 0
def add_parser(queue_subparsers, parent_parser):
QUEUE_START_HELP = "Start the experiments task queue worker."
queue_start_parser = queue_subparsers.add_parser(
"start",
parents=[parent_parser],
description=append_doc_link(QUEUE_START_HELP, "queue/start"),
help=QUEUE_START_HELP,
formatter_class=argparse.RawDescriptionHelpFormatter,
)
queue_start_parser.add_argument(
"-j",
"--jobs",
type=int,
default=1,
help=(
"Maximum number of concurrent queue workers to start. "
"Defaults to 1."
),
metavar="<number>",
)
queue_start_parser.set_defaults(func=CmdQueueStart)
+62
View File
@@ -0,0 +1,62 @@
import argparse
import logging
from typing import List, Mapping, Optional
from dvc.cli.command import CmdBase
from dvc.cli.utils import append_doc_link
from dvc.compare import TabularData
from dvc.ui import ui
from ..experiments.show import format_time
logger = logging.getLogger(__name__)
class CmdQueueStatus(CmdBase):
"""Show queue task and worker status."""
def run(self):
result: List[
Mapping[str, Optional[str]]
] = self.repo.experiments.celery_queue.status()
if result:
all_headers = ["Task", "Name", "Created", "Status"]
td = TabularData(all_headers)
for exp in result:
created = format_time(exp.get("timestamp"))
td.append(
[
exp["rev"][:7],
exp.get("name", ""),
created,
exp["status"],
]
)
td.render()
else:
ui.write("No experiment tasks in the queue.")
ui.write()
worker_status = self.repo.experiments.celery_queue.worker_status()
active_count = len(
[name for name, task in worker_status.items() if task]
)
idle_count = len(worker_status) - active_count
ui.write(f"Worker status: {active_count} active, {idle_count} idle")
return 0
def add_parser(queue_subparsers, parent_parser):
QUEUE_STATUS_HELP = (
"Show the status of experiments queue tasks and workers."
)
queue_status_parser = queue_subparsers.add_parser(
"status",
parents=[parent_parser],
description=append_doc_link(QUEUE_STATUS_HELP, "queue/status"),
help=QUEUE_STATUS_HELP,
formatter_class=argparse.RawDescriptionHelpFormatter,
)
queue_status_parser.set_defaults(func=CmdQueueStatus)
+43
View File
@@ -0,0 +1,43 @@
import argparse
import logging
from dvc.cli.command import CmdBase
from dvc.cli.utils import append_doc_link
from dvc.ui import ui
logger = logging.getLogger(__name__)
class CmdQueueStop(CmdBase):
"""Stop exp queue workers."""
def run(self):
self.repo.experiments.celery_queue.shutdown(kill=self.args.kill)
if self.args.kill:
ui.write(
"All running tasks in the queue have been killed."
"Queue workers are stopping."
)
else:
ui.write("Queue workers will stop after running tasks finish.")
return 0
def add_parser(queue_subparsers, parent_parser):
QUEUE_STOP_HELP = "Stop all experiments task queue workers."
queue_stop_parser = queue_subparsers.add_parser(
"stop",
parents=[parent_parser],
description=append_doc_link(QUEUE_STOP_HELP, "queue/stop"),
help=QUEUE_STOP_HELP,
formatter_class=argparse.RawDescriptionHelpFormatter,
)
queue_stop_parser.add_argument(
"--kill",
action="store_true",
help="Kill all running tasks before stopping the queue workers.",
)
queue_stop_parser.set_defaults(func=CmdQueueStop)
+1 -1
View File
@@ -1,9 +1,9 @@
import argparse
import logging
from dvc.cli import completion
from dvc.cli.command import CmdBase
from dvc.cli.utils import append_doc_link
from dvc.commands import completion
from dvc.exceptions import DvcException
logger = logging.getLogger(__name__)
+33 -35
View File
@@ -1,8 +1,8 @@
import argparse
from dvc.cli import completion
from dvc.cli.command import CmdBase
from dvc.cli.utils import append_doc_link
from dvc.commands import completion
from dvc.commands.status import CmdDataStatus
@@ -16,9 +16,7 @@ class CmdRepro(CmdBase):
if len(stages) == 0:
ui.write(CmdDataStatus.UP_TO_DATE_MSG)
else:
ui.write(
"Use `dvc push` to send your updates to " "remote storage."
)
ui.write("Use `dvc push` to send your updates to remote storage.")
if self.args.metrics:
from dvc.compare import show_metrics
@@ -66,6 +64,13 @@ def add_arguments(repro_parser):
default=False,
help="Reproduce even if dependencies were not changed.",
)
repro_parser.add_argument(
"-i",
"--interactive",
action="store_true",
default=False,
help="Ask for confirmation before reproducing each stage.",
)
repro_parser.add_argument(
"-s",
"--single-item",
@@ -74,27 +79,6 @@ def add_arguments(repro_parser):
help="Reproduce only single data item without recursive dependencies "
"check.",
)
repro_parser.add_argument(
"-m",
"--metrics",
action="store_true",
default=False,
help="Show metrics after reproduction.",
)
repro_parser.add_argument(
"--dry",
action="store_true",
default=False,
help="Only print the commands that would be executed without "
"actually executing.",
)
repro_parser.add_argument(
"-i",
"--interactive",
action="store_true",
default=False,
help="Ask for confirmation before reproducing each stage.",
)
repro_parser.add_argument(
"-p",
"--pipeline",
@@ -118,11 +102,11 @@ def add_arguments(repro_parser):
help="Reproduce all stages in the specified directory.",
)
repro_parser.add_argument(
"--force-downstream",
"-m",
"--metrics",
action="store_true",
default=False,
help="Reproduce all descendants of a changed stage even if their "
"direct dependencies didn't change.",
help="Show metrics after reproduction.",
)
repro_parser.add_argument(
"--downstream",
@@ -130,6 +114,13 @@ def add_arguments(repro_parser):
default=False,
help="Start from the specified stages when reproducing pipelines.",
)
repro_parser.add_argument(
"--force-downstream",
action="store_true",
default=False,
help="Reproduce all descendants of a changed stage even if their "
"direct dependencies didn't change.",
)
repro_parser.add_argument(
"--pull",
action="store_true",
@@ -139,6 +130,13 @@ def add_arguments(repro_parser):
"from the run-cache."
),
)
repro_parser.add_argument(
"--dry",
action="store_true",
default=False,
help="Only print the commands that would be executed without "
"actually executing.",
)
def add_parser(subparsers, parent_parser):
@@ -156,13 +154,10 @@ def add_parser(subparsers, parent_parser):
add_arguments(repro_parser)
# repro only args
repro_parser.add_argument(
"--no-run-cache",
"--glob",
action="store_true",
default=False,
help=(
"Execute stage commands even if they have already been run with "
"the same command/dependencies/outputs/etc before."
),
help="Allows targets containing shell-style wildcards.",
)
repro_parser.add_argument(
"--no-commit",
@@ -171,9 +166,12 @@ def add_parser(subparsers, parent_parser):
help="Don't put files/directories into cache.",
)
repro_parser.add_argument(
"--glob",
"--no-run-cache",
action="store_true",
default=False,
help="Allows targets containing shell-style wildcards.",
help=(
"Execute stage commands even if they have already been run with "
"the same command/dependencies/outputs/etc before."
),
)
repro_parser.set_defaults(func=CmdRepro)
+13 -13
View File
@@ -69,12 +69,25 @@ def add_parser(subparsers, parent_parser):
run_parser.add_argument(
"--file", metavar="<filename>", help=argparse.SUPPRESS
)
run_parser.add_argument(
"--single-stage",
action="store_true",
default=False,
help=argparse.SUPPRESS,
)
_add_common_args(run_parser)
run_parser.add_argument(
"--no-exec",
action="store_true",
default=False,
help="Only create dvc.yaml without actually running it.",
)
run_parser.add_argument(
"--no-commit",
action="store_true",
default=False,
help="Don't put files/directories into cache.",
)
run_parser.add_argument(
"--no-run-cache",
action="store_true",
@@ -84,17 +97,4 @@ def add_parser(subparsers, parent_parser):
"with the same command/dependencies/outputs/etc before."
),
)
run_parser.add_argument(
"--no-commit",
action="store_true",
default=False,
help="Don't put files/directories into cache.",
)
run_parser.add_argument(
"--single-stage",
action="store_true",
default=False,
help=argparse.SUPPRESS,
)
_add_common_args(run_parser)
run_parser.set_defaults(func=CmdRun)
+46 -47
View File
@@ -3,9 +3,9 @@ import logging
from itertools import chain, filterfalse
from typing import TYPE_CHECKING, Dict, Iterable, List
from dvc.cli import completion
from dvc.cli.command import CmdBase
from dvc.cli.utils import append_doc_link, fix_subparsers
from dvc.commands import completion
from dvc.utils.cli_parse import parse_params
from dvc.utils.humanize import truncate_text
@@ -76,7 +76,7 @@ class CmdStageList(CmdBase):
# removing duplicates while maintaining order
collected = chain.from_iterable(
self.repo.stage.collect(
target=target, recursive=self.args.recursive, accept_group=True
target=target, recursive=self.args.recursive
)
for target in self.args.targets
)
@@ -94,9 +94,7 @@ class CmdStageList(CmdBase):
self.repo.stage_collection_error_handler = log_error
stages = self._get_stages()
names_only = self.args.names_only
data = prepare_stages_data(stages, description=not names_only)
data = prepare_stages_data(stages, description=not self.args.name_only)
ui.table(data.items())
return 0
@@ -139,6 +137,13 @@ class CmdStageAdd(CmdBase):
def _add_common_args(parser):
parser.add_argument(
"-f",
"--force",
action="store_true",
default=False,
help="Overwrite existing stage",
)
parser.add_argument(
"-d",
"--deps",
@@ -147,6 +152,14 @@ def _add_common_args(parser):
help="Declare dependencies for reproducible cmd.",
metavar="<path>",
).complete = completion.FILE
parser.add_argument(
"-p",
"--params",
action="append",
default=[],
help="Declare parameter to use as additional dependency.",
metavar="[<filename>:]<params_list>",
).complete = completion.FILE
parser.add_argument(
"-o",
"--outs",
@@ -165,13 +178,36 @@ def _add_common_args(parser):
metavar="<filename>",
).complete = completion.FILE
parser.add_argument(
"-p",
"--params",
"-c",
"--checkpoints",
action="append",
default=[],
help="Declare parameter to use as additional dependency.",
metavar="[<filename>:]<params_list>",
help="Declare checkpoint output file or directory for 'dvc exp run'. "
"Not compatible with 'dvc repro'.",
metavar="<filename>",
).complete = completion.FILE
parser.add_argument(
"--external",
action="store_true",
default=False,
help="Allow outputs that are outside of the DVC repository.",
)
parser.add_argument(
"--outs-persist",
action="append",
default=[],
help="Declare output file or directory that will not be "
"removed upon repro.",
metavar="<filename>",
)
parser.add_argument(
"--outs-persist-no-cache",
action="append",
default=[],
help="Declare output file or directory that will not be "
"removed upon repro (do not put into DVC cache).",
metavar="<filename>",
)
parser.add_argument(
"-m",
"--metrics",
@@ -228,50 +264,12 @@ def _add_common_args(parser):
help="Directory within your repo to run your command in.",
metavar="<path>",
)
parser.add_argument(
"-f",
"--force",
action="store_true",
default=False,
help="Overwrite existing stage",
)
parser.add_argument(
"--outs-persist",
action="append",
default=[],
help="Declare output file or directory that will not be "
"removed upon repro.",
metavar="<filename>",
)
parser.add_argument(
"--outs-persist-no-cache",
action="append",
default=[],
help="Declare output file or directory that will not be "
"removed upon repro (do not put into DVC cache).",
metavar="<filename>",
)
parser.add_argument(
"-c",
"--checkpoints",
action="append",
default=[],
help="Declare checkpoint output file or directory for 'dvc exp run'. "
"Not compatible with 'dvc repro'.",
metavar="<filename>",
).complete = completion.FILE
parser.add_argument(
"--always-changed",
action="store_true",
default=False,
help="Always consider this DVC-file as changed.",
)
parser.add_argument(
"--external",
action="store_true",
default=False,
help="Allow outputs that are outside of the DVC repository.",
)
parser.add_argument(
"--desc",
type=str,
@@ -358,6 +356,7 @@ def add_parser(subparsers, parent_parser):
help="List all stages inside the specified directory.",
)
stage_list_parser.add_argument(
"--name-only",
"--names-only",
action="store_true",
default=False,
+1 -1
View File
@@ -1,9 +1,9 @@
import argparse
import logging
from dvc.cli import completion
from dvc.cli.command import CmdBase
from dvc.cli.utils import append_doc_link
from dvc.commands import completion
from dvc.exceptions import DvcException
logger = logging.getLogger(__name__)
+13 -2
View File
@@ -1,9 +1,9 @@
import argparse
import logging
from dvc.cli import completion
from dvc.cli.command import CmdBase
from dvc.cli.utils import append_doc_link
from dvc.commands import completion
from dvc.exceptions import DvcException
logger = logging.getLogger(__name__)
@@ -18,6 +18,7 @@ class CmdUpdate(CmdBase):
rev=self.args.rev,
recursive=self.args.recursive,
to_remote=self.args.to_remote,
no_download=self.args.no_download,
remote=self.args.remote,
jobs=self.args.jobs,
)
@@ -28,7 +29,10 @@ class CmdUpdate(CmdBase):
def add_parser(subparsers, parent_parser):
UPDATE_HELP = "Update data artifacts imported from other DVC repositories."
UPDATE_HELP = (
"Update data artifact imported (via dvc import or dvc import-url) "
"from an external DVC repository or URL."
)
update_parser = subparsers.add_parser(
"update",
parents=[parent_parser],
@@ -52,6 +56,13 @@ def add_parser(subparsers, parent_parser):
default=False,
help="Update all stages in the specified directory.",
)
update_parser.add_argument(
"--no-download",
action="store_true",
default=False,
help="Update .dvc file hash value(s)"
" but do not download the file(s).",
)
update_parser.add_argument(
"--to-remote",
action="store_true",
+8 -9
View File
@@ -86,9 +86,11 @@ class Config(dict):
def __init__(
self, dvc_dir=None, validate=True, fs=None, config=None
): # pylint: disable=super-init-not-called
from dvc.fs.local import LocalFileSystem
from dvc.fs import LocalFileSystem
self.dvc_dir = dvc_dir
self.wfs = LocalFileSystem()
self.fs = fs or self.wfs
if not dvc_dir:
try:
@@ -98,10 +100,7 @@ class Config(dict):
except NotDvcRepoError:
self.dvc_dir = None
else:
self.dvc_dir = os.path.abspath(os.path.realpath(dvc_dir))
self.wfs = LocalFileSystem(url=self.dvc_dir)
self.fs = fs or self.wfs
self.dvc_dir = self.fs.path.abspath(self.fs.path.realpath(dvc_dir))
self.load(validate=validate, config=config)
@@ -124,8 +123,8 @@ class Config(dict):
}
if self.dvc_dir is not None:
files["repo"] = os.path.join(self.dvc_dir, self.CONFIG)
files["local"] = os.path.join(self.dvc_dir, self.CONFIG_LOCAL)
files["repo"] = self.fs.path.join(self.dvc_dir, self.CONFIG)
files["local"] = self.fs.path.join(self.dvc_dir, self.CONFIG_LOCAL)
return files
@@ -188,7 +187,7 @@ class Config(dict):
filename = self.files[level]
fs = self._get_fs(level)
logger.debug(f"Writing '{filename}'.")
logger.debug("Writing '%s'.", filename)
fs.makedirs(os.path.dirname(filename))
@@ -228,7 +227,7 @@ class Config(dict):
@staticmethod
def _to_relpath(conf_dir, path):
from dvc.fs.local import localfs
from dvc.fs import localfs
from dvc.utils import relpath
from .config_schema import RelPath
+17
View File
@@ -78,7 +78,9 @@ REMOTE_COMMON = {
"url": str,
"checksum_jobs": All(Coerce(int), Range(1)),
"jobs": All(Coerce(int), Range(1)),
Optional("worktree"): Bool,
Optional("no_traverse"): Bool, # obsoleted
Optional("version_aware"): Bool,
}
LOCAL_COMMON = {
"type": supported_cache_type,
@@ -152,6 +154,8 @@ SCHEMA = {
"ssl_verify": Any(Bool, str),
"sse": str,
"sse_kms_key_id": str,
"sse_customer_algorithm": str,
"sse_customer_key": str,
"acl": str,
"grant_read": str,
"grant_read_acp": str,
@@ -166,6 +170,7 @@ SCHEMA = {
"gs": {
"projectname": str,
"credentialpath": str,
"endpointurl": str,
Optional("verify", default=False): Bool,
**REMOTE_COMMON,
},
@@ -217,6 +222,7 @@ SCHEMA = {
**REMOTE_COMMON,
},
"gdrive": {
"profile": str,
"gdrive_use_service_account": Bool,
"gdrive_client_id": str,
"gdrive_client_secret": str,
@@ -224,6 +230,7 @@ SCHEMA = {
"gdrive_service_account_user_email": str,
"gdrive_service_account_json_file_path": str,
Optional("gdrive_trash_only", default=False): Bool,
Optional("gdrive_acknowledge_abuse", default=False): Bool,
Optional("verify", default=True): Bool,
**REMOTE_COMMON,
},
@@ -269,6 +276,7 @@ SCHEMA = {
"plots": {
"html_template": str,
Optional("auto_open", default=False): Bool,
"out_dir": str,
},
"exp": {
"code": str,
@@ -279,4 +287,13 @@ SCHEMA = {
"plots": str,
"live": str,
},
"parsing": {
"bool": All(Lower, Choices("store_true", "boolean_optional")),
"list": All(Lower, Choices("nargs", "append")),
},
"hydra": {
Optional("enabled", default=False): Bool,
"config_dir": str,
"config_name": str,
},
}
+7 -4
View File
@@ -6,6 +6,7 @@ import os
import platform
import sys
from subprocess import Popen
from typing import List
from dvc.env import DVC_DAEMON
from dvc.utils import fix_env, is_binary
@@ -81,7 +82,7 @@ def _spawn_posix(cmd, env):
def _spawn(cmd, env):
logger.debug(f"Trying to spawn '{cmd}'")
logger.debug("Trying to spawn '%s'", cmd)
if os.name == "nt":
_spawn_windows(cmd, env)
@@ -90,7 +91,7 @@ def _spawn(cmd, env):
else:
raise NotImplementedError
logger.debug(f"Spawned '{cmd}'")
logger.debug("Spawned '%s'", cmd)
def daemon(args):
@@ -99,12 +100,14 @@ def daemon(args):
Args:
args (list): list of arguments to append to `dvc daemon` command.
"""
daemonize(["daemon", "-q"] + args)
def daemonize(cmd: List[str]):
if os.environ.get(DVC_DAEMON):
logger.debug("skipping launching a new daemon.")
return
cmd = ["daemon", "-q"] + args
env = fix_env()
if not is_binary():
file_path = os.path.abspath(inspect.stack()[0][1])
-33
View File
@@ -1,33 +0,0 @@
import logging
from typing import TYPE_CHECKING, Iterator, Union
from .tree import Tree
if TYPE_CHECKING:
from dvc.hash_info import HashInfo
from dvc.objects.db import ObjectDB
from dvc.objects.file import HashFile
logger = logging.getLogger(__name__)
def check(odb: "ObjectDB", obj: "HashFile", **kwargs):
if isinstance(obj, Tree):
for _, _, oid in obj:
odb.check(oid, **kwargs)
odb.check(obj.hash_info, **kwargs)
def load(odb: "ObjectDB", hash_info: "HashInfo") -> "HashFile":
if hash_info.isdir:
return Tree.load(odb, hash_info)
return odb.get(hash_info)
def iterobjs(
obj: Union["Tree", "HashFile"]
) -> Iterator[Union["Tree", "HashFile"]]:
if isinstance(obj, Tree):
yield from (entry_obj for _, entry_obj in obj)
yield obj
-265
View File
@@ -1,265 +0,0 @@
import logging
from itertools import chain
from dvc import prompt
from dvc.exceptions import CacheLinkError, CheckoutError, ConfirmRemoveError
from dvc.fs.utils import test_links, transfer
from dvc.ignore import DvcIgnoreFilter
from dvc.types import Optional
from .diff import ROOT
from .diff import diff as odiff
from .slow_link_detection import slow_link_guard # type: ignore[attr-defined]
from .stage import stage
logger = logging.getLogger(__name__)
def _remove(fs_path, fs, in_cache, force=False):
if not fs.exists(fs_path):
return
if force:
fs.remove(fs_path)
return
if not in_cache:
msg = (
f"file/directory '{fs_path}' is going to be removed. "
"Are you sure you want to proceed?"
)
if not prompt.confirm(msg):
raise ConfirmRemoveError(fs_path)
fs.remove(fs_path)
def _relink(link, cache, cache_info, fs, path, in_cache, force):
_remove(path, fs, in_cache, force=force)
link(cache, cache_info, fs, path)
# NOTE: Depending on a file system (e.g. on NTFS), `_remove` might reset
# read-only permissions in order to delete a hardlink to protected object,
# which will also reset it for the object itself, making it unprotected,
# so we need to protect it back.
cache.protect(cache_info)
def _checkout_file(
link,
fs_path,
fs,
change,
cache,
force,
progress_callback=None,
relink=False,
state=None,
):
"""The file is changed we need to checkout a new copy"""
modified = False
cache_fs_path = cache.hash_to_path(change.new.oid.value)
if change.old.oid:
if relink:
if fs.iscopy(fs_path) and cache.cache_types[0] == "copy":
cache.unprotect(fs_path)
else:
_relink(
link,
cache,
cache_fs_path,
fs,
fs_path,
change.old.in_cache,
force=force,
)
else:
modified = True
_relink(
link,
cache,
cache_fs_path,
fs,
fs_path,
change.old.in_cache,
force=force,
)
else:
link(cache, cache_fs_path, fs, fs_path)
modified = True
if state:
state.save(fs_path, fs, change.new.oid)
if progress_callback:
progress_callback(fs_path)
return modified
def _diff(
fs_path,
fs,
obj,
cache,
relink=False,
dvcignore: Optional[DvcIgnoreFilter] = None,
):
old = None
try:
_, _, old = stage(
cache,
fs_path,
fs,
obj.hash_info.name if obj else cache.fs.PARAM_CHECKSUM,
dry_run=True,
dvcignore=dvcignore,
)
except FileNotFoundError:
pass
diff = odiff(old, obj, cache)
if relink:
diff.modified.extend(diff.unchanged)
return diff
class Link:
def __init__(self, links):
self._links = links
@slow_link_guard
def __call__(self, cache, from_path, to_fs, to_path):
if to_fs.exists(to_path):
to_fs.remove(to_path) # broken symlink
cache.makedirs(cache.fs.path.parent(to_path))
try:
transfer(cache.fs, from_path, to_fs, to_path, links=self._links)
except FileNotFoundError as exc:
raise CheckoutError([to_path]) from exc
except OSError as exc:
raise CacheLinkError([to_path]) from exc
def _checkout(
diff,
fs_path,
fs,
cache,
force=False,
progress_callback=None,
relink=False,
state=None,
):
if not diff:
return
links = test_links(cache.cache_types, cache.fs, cache.fs_path, fs, fs_path)
if not links:
raise CacheLinkError([fs_path])
link = Link(links)
for change in diff.deleted:
entry_path = (
fs.path.join(fs_path, *change.old.key)
if change.old.key != ROOT
else fs_path
)
_remove(entry_path, fs, change.old.in_cache, force=force)
failed = []
for change in chain(diff.added, diff.modified):
entry_path = (
fs.path.join(fs_path, *change.new.key)
if change.new.key != ROOT
else fs_path
)
if change.new.oid.isdir:
fs.makedirs(entry_path)
continue
try:
_checkout_file(
link,
entry_path,
fs,
change,
cache,
force,
progress_callback,
relink,
state=state,
)
except CheckoutError as exc:
failed.extend(exc.target_infos)
if failed:
raise CheckoutError(failed)
def checkout(
fs_path,
fs,
obj,
cache,
force=False,
progress_callback=None,
relink=False,
quiet=False,
dvcignore: Optional[DvcIgnoreFilter] = None,
state=None,
):
# if scheme(fs_path) not in ["local", cache.fs.scheme]:
# raise NotImplementedError
diff = _diff(
fs_path,
fs,
obj,
cache,
relink=relink,
dvcignore=dvcignore,
)
failed = []
if not obj:
if not quiet:
logger.warning(
"No file hash info found for '%s'. It won't be created.",
fs_path,
)
failed.append(fs_path)
elif not diff:
logger.trace("Data '%s' didn't change.", fs_path) # type: ignore
try:
_checkout(
diff,
fs_path,
fs,
cache,
force=force,
progress_callback=progress_callback,
relink=relink,
state=state,
)
except CheckoutError as exc:
failed.extend(exc.target_infos)
if diff and state:
state.save_link(fs_path, fs)
if not failed:
state.save(fs_path, fs, obj.hash_info)
if failed or not diff:
if progress_callback and obj:
progress_callback(fs_path, len(obj))
if failed:
raise CheckoutError(failed)
return
return bool(diff) and not relink
-149
View File
@@ -1,149 +0,0 @@
import logging
import os
from abc import ABC, abstractmethod
from typing import TYPE_CHECKING, Iterable, Set
from dvc.objects.errors import ObjectDBError
from dvc.utils.decorators import with_diskcache
if TYPE_CHECKING:
from dvc.types import StrPath
logger = logging.getLogger(__name__)
class ObjectDBIndexBase(ABC):
@abstractmethod
def __init__(
self,
tmp_dir: "StrPath",
name: str,
):
pass
@abstractmethod
def __iter__(self):
pass
@abstractmethod
def __contains__(self, hash_):
pass
def hashes(self):
return iter(self)
@abstractmethod
def dir_hashes(self):
pass
@abstractmethod
def clear(self):
pass
@abstractmethod
def update(self, dir_hashes: Iterable[str], file_hashes: Iterable[str]):
pass
@abstractmethod
def intersection(self, hashes: Set[str]):
pass
class ObjectDBIndexNoop(ObjectDBIndexBase):
"""No-op class for ODBs which are not indexed."""
def __init__(
self,
tmp_dir: "StrPath",
name: str,
): # pylint: disable=super-init-not-called
pass
def __iter__(self):
return iter([])
def __contains__(self, hash_):
return False
def dir_hashes(self):
return []
def clear(self):
pass
def update(self, dir_hashes: Iterable[str], file_hashes: Iterable[str]):
pass
def intersection(self, hashes: Set[str]):
return []
class ObjectDBIndex(ObjectDBIndexBase):
"""Class for indexing hashes in an ODB."""
INDEX_SUFFIX = ".idx"
INDEX_DIR = "index"
def __init__(
self,
tmp_dir: "StrPath",
name: str,
): # pylint: disable=super-init-not-called
from diskcache import Cache, Index
from dvc.fs.local import LocalFileSystem
from dvc.utils.fs import makedirs
self.index_dir = os.path.join(tmp_dir, self.INDEX_DIR, name)
makedirs(self.index_dir, exist_ok=True)
self.fs = LocalFileSystem()
self.index = Index.fromcache(
Cache(
self.index_dir,
disk_pickle_protocol=4,
eviction_policy="none",
)
)
@with_diskcache(name="index")
def __iter__(self):
return iter(self.index)
@with_diskcache(name="index")
def __contains__(self, hash_):
return hash_ in self.index
@with_diskcache(name="index")
def dir_hashes(self):
"""Iterate over .dir hashes stored in the index."""
yield from (hash_ for hash_, is_dir in self.index.items() if is_dir)
@with_diskcache(name="index")
def clear(self):
"""Clear this index (to force re-indexing later)."""
from diskcache import Timeout
try:
self.index.clear()
except Timeout as exc:
raise ObjectDBError("Failed to clear ODB index") from exc
@with_diskcache(name="index")
def update(self, dir_hashes: Iterable[str], file_hashes: Iterable[str]):
"""Update this index, adding the specified hashes."""
from diskcache import Timeout
try:
with self.index.transact():
for hash_ in dir_hashes:
self.index[hash_] = True
with self.index.transact():
for hash_ in file_hashes:
self.index[hash_] = False
except Timeout as exc:
raise ObjectDBError("Failed to update ODB index") from exc
@with_diskcache(name="index")
def intersection(self, hashes: Set[str]):
"""Iterate over values from `hashes` which exist in the index."""
yield from hashes.intersection(self.index.keys())
-169
View File
@@ -1,169 +0,0 @@
import logging
import os
import stat
from funcy import cached_property
from shortuuid import uuid
from dvc.hash_info import HashInfo
from dvc.objects.db import ObjectDB
from dvc.objects.errors import ObjectFormatError
from dvc.progress import Tqdm
from dvc.utils import relpath
from dvc.utils.fs import copyfile, remove, umask, walk_files
logger = logging.getLogger(__name__)
class LocalObjectDB(ObjectDB):
DEFAULT_CACHE_TYPES = ["reflink", "copy"]
CACHE_MODE = 0o444
UNPACKED_DIR_SUFFIX = ".unpacked"
def __init__(self, fs, fs_path, **config):
super().__init__(fs, fs_path, **config)
self.cache_dir = fs_path
shared = config.get("shared")
if shared:
self._file_mode = 0o664
self._dir_mode = 0o2775
else:
self._file_mode = 0o666 & ~umask
self._dir_mode = 0o777 & ~umask
@property
def cache_dir(self):
return self.fs_path if self.fs_path else None
@cache_dir.setter
def cache_dir(self, value):
self.fs_path = value
@cached_property
def cache_path(self):
return os.path.abspath(self.cache_dir)
def move(self, from_info, to_info):
super().move(from_info, to_info)
os.chmod(to_info, self._file_mode)
def makedirs(self, fs_path):
from dvc.utils.fs import makedirs
makedirs(fs_path, exist_ok=True, mode=self._dir_mode)
def hash_to_path(self, hash_):
# NOTE: `self.cache_path` is already normalized so we can simply use
# `os.sep` instead of `os.path.join`. This results in this helper
# being ~5.5 times faster.
return f"{self.cache_path}{os.sep}{hash_[0:2]}{os.sep}{hash_[2:]}"
def hashes_exist(
self, hashes, jobs=None, name=None
): # pylint: disable=unused-argument
ret = []
for hash_ in Tqdm(
hashes,
unit="file",
desc="Querying " + ("cache in " + name if name else "local cache"),
):
hash_info = HashInfo(self.fs.PARAM_CHECKSUM, hash_)
try:
self.check(hash_info)
ret.append(hash_)
except (FileNotFoundError, ObjectFormatError):
pass
return ret
def _list_paths(self, prefix=None):
assert self.fs_path is not None
if prefix:
fs_path = self.fs.path.join(self.fs_path, prefix[:2])
if not self.fs.exists(fs_path):
return
else:
fs_path = self.fs_path
# NOTE: use utils.fs walk_files since fs.walk_files will not follow
# symlinks
yield from walk_files(fs_path)
def _remove_unpacked_dir(self, hash_):
hash_fs_path = self.hash_to_path(hash_)
fs_path = self.fs.path.with_name(
hash_fs_path,
self.fs.path.name(hash_fs_path) + self.UNPACKED_DIR_SUFFIX,
)
self.fs.remove(fs_path)
def _unprotect_file(self, path):
if self.fs.is_symlink(path) or self.fs.is_hardlink(path):
logger.debug("Unprotecting '%s'", path)
tmp = os.path.join(os.path.dirname(path), "." + uuid())
# The operations order is important here - if some application
# would access the file during the process of copyfile then it
# would get only the part of file. So, at first, the file should be
# copied with the temporary name, and then original file should be
# replaced by new.
copyfile(path, tmp, name=f"Unprotecting '{relpath(path)}'")
remove(path)
os.rename(tmp, path)
else:
logger.debug(
"Skipping copying for '%s', since it is not "
"a symlink or a hardlink.",
path,
)
os.chmod(path, self._file_mode)
def _unprotect_dir(self, path):
for fname in self.fs.find(path):
self._unprotect_file(fname)
def unprotect(self, fs_path):
if not os.path.exists(fs_path):
from dvc.exceptions import DvcException
raise DvcException(
f"can't unprotect non-existing data '{fs_path}'"
)
if os.path.isdir(fs_path):
self._unprotect_dir(fs_path)
else:
self._unprotect_file(fs_path)
def protect(self, fs_path):
try:
os.chmod(fs_path, self.CACHE_MODE)
except OSError:
# NOTE: not being able to protect cache file is not fatal, it
# might happen on funky filesystems (e.g. Samba, see #5255),
# read-only filesystems or in a shared cache scenario.
logger.trace("failed to protect '%s'", fs_path, exc_info=True)
def is_protected(self, fs_path):
try:
mode = os.stat(fs_path).st_mode
except FileNotFoundError:
return False
return stat.S_IMODE(mode) == self.CACHE_MODE
def set_exec(self, fs_path):
mode = os.stat(fs_path).st_mode | stat.S_IEXEC
try:
os.chmod(fs_path, mode)
except OSError:
logger.trace(
"failed to chmod '%s' '%s'",
oct(mode),
fs_path,
exc_info=True,
)
-88
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@@ -1,88 +0,0 @@
import io
import logging
import os
from typing import TYPE_CHECKING, Dict
from dvc.objects.db import ObjectDB
from dvc.objects.errors import ObjectFormatError
from dvc.scheme import Schemes
from ..reference import ReferenceHashFile
if TYPE_CHECKING:
from dvc.fs.base import FileSystem
from dvc.hash_info import HashInfo
from dvc.types import AnyPath
logger = logging.getLogger(__name__)
class ReferenceObjectDB(ObjectDB):
"""Reference ODB.
File objects are stored as ReferenceHashFiles which reference paths outside
of the staging ODB fs. Tree objects are stored natively.
"""
def __init__(self, *args, **kwargs):
super().__init__(*args, **kwargs)
self._fs_cache: Dict[tuple, "FileSystem"] = {}
self._obj_cache: Dict["HashInfo", "ReferenceHashFile"] = {}
def get(self, hash_info: "HashInfo"):
if hash_info.isdir:
return super().get(hash_info)
try:
return self._obj_cache[hash_info]
except KeyError:
pass
fs_path = self.hash_to_path(hash_info.value)
try:
with self.fs.open(fs_path, "rb") as fobj:
ref_file = ReferenceHashFile.from_bytes(
fobj.read(), fs_cache=self._fs_cache
)
except OSError:
raise FileNotFoundError
try:
ref_file.check(self, check_hash=False)
except ObjectFormatError:
self.fs.remove(fs_path)
raise
self._obj_cache[hash_info] = ref_file
return ref_file
def _add_file(
self,
from_fs: "FileSystem",
from_info: "AnyPath",
to_info: "AnyPath",
hash_info: "HashInfo",
hardlink: bool = False,
):
self.makedirs(self.fs.path.parent(to_info))
if hash_info.isdir:
return super()._add_file(
from_fs,
from_info,
to_info,
hash_info,
hardlink=hardlink,
)
ref_file = ReferenceHashFile(from_info, from_fs, hash_info)
self._obj_cache[hash_info] = ref_file
ref_fobj = io.BytesIO(ref_file.to_bytes())
ref_fobj.seek(0)
try:
self.fs.upload(ref_fobj, to_info)
except OSError as exc:
if isinstance(exc, FileExistsError) or (
os.name == "nt"
and exc.__context__
and isinstance(exc.__context__, FileExistsError)
):
logger.debug("'%s' file already exists, skipping", to_info)
else:
raise
if from_fs.scheme != Schemes.LOCAL:
self._fs_cache[ReferenceHashFile.config_tuple(from_fs)] = from_fs
-133
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@@ -1,133 +0,0 @@
from dataclasses import dataclass, field
from typing import TYPE_CHECKING, List, Optional, Tuple
if TYPE_CHECKING:
from dvc.hash_info import HashInfo
from dvc.objects.file import HashFile
ADD = "add"
MODIFY = "modify"
DELETE = "delete"
UNCHANGED = "unchanged"
@dataclass
class TreeEntry:
in_cache: bool
key: Tuple[str]
oid: Optional["HashInfo"] = field(default=None)
def __bool__(self):
return bool(self.oid)
def __eq__(self, other):
if not isinstance(other, TreeEntry):
return False
if self.key != other.key:
return False
return self.oid == other.oid
@dataclass
class Change:
old: TreeEntry
new: TreeEntry
@property
def typ(self):
if not self.old and not self.new:
return UNCHANGED
if self.old and not self.new:
return DELETE
if not self.old and self.new:
return ADD
if self.old != self.new:
return MODIFY
return UNCHANGED
def __bool__(self):
return self.typ != UNCHANGED
@dataclass
class DiffResult:
added: List[Change] = field(default_factory=list, compare=True)
modified: List[Change] = field(default_factory=list, compare=True)
deleted: List[Change] = field(default_factory=list, compare=True)
unchanged: List[Change] = field(default_factory=list, compare=True)
def __bool__(self):
return bool(self.added or self.modified or self.deleted)
ROOT = ("",)
def diff(
old: Optional["HashFile"], new: Optional["HashFile"], cache
) -> DiffResult:
from .tree import Tree
if old is None and new is None:
return DiffResult()
def _get_keys(obj):
if not obj:
return []
return [ROOT] + (
[key for key, _, _ in obj] if isinstance(obj, Tree) else []
)
old_keys = set(_get_keys(old))
new_keys = set(_get_keys(new))
def _get_oid(obj, key):
if not obj or key == ROOT:
return obj.hash_info if obj else None
entry_obj = obj.get(cache, key)
return entry_obj.hash_info if entry_obj else None
def _in_cache(oid, cache):
from dvc.objects.errors import ObjectFormatError
if not oid:
return False
try:
cache.check(oid)
return True
except (FileNotFoundError, ObjectFormatError):
return False
ret = DiffResult()
for key in old_keys | new_keys:
old_oid = _get_oid(old, key)
new_oid = _get_oid(new, key)
change = Change(
old=TreeEntry(_in_cache(old_oid, cache), key, old_oid),
new=TreeEntry(_in_cache(new_oid, cache), key, new_oid),
)
if change.typ == ADD:
ret.added.append(change)
elif change.typ == MODIFY:
ret.modified.append(change)
elif change.typ == DELETE:
ret.deleted.append(change)
else:
assert change.typ == UNCHANGED
if not change.new.in_cache and not (
change.new.oid and change.new.oid.isdir
):
ret.modified.append(change)
else:
ret.unchanged.append(change)
return ret
-40
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@@ -1,40 +0,0 @@
def gc(odb, used, jobs=None, cache_odb=None, shallow=True):
from dvc.data.tree import Tree
from dvc.objects.errors import ObjectDBPermissionError
if odb.read_only:
raise ObjectDBPermissionError("Cannot gc read-only ODB")
if not cache_odb:
cache_odb = odb
used_hashes = set()
for hash_info in used:
used_hashes.add(hash_info.value)
if hash_info.isdir and not shallow:
tree = Tree.load(cache_odb, hash_info)
used_hashes.update(
entry_obj.hash_info.value for _, entry_obj in tree
)
def _is_dir_hash(_hash):
from dvc.hash_info import HASH_DIR_SUFFIX
return _hash.endswith(HASH_DIR_SUFFIX)
removed = False
# hashes must be sorted to ensure we always remove .dir files first
for hash_ in sorted(
odb.all(jobs, odb.fs_path),
key=_is_dir_hash,
reverse=True,
):
if hash_ in used_hashes:
continue
fs_path = odb.hash_to_path(hash_)
if _is_dir_hash(hash_):
# backward compatibility
# pylint: disable=protected-access
odb._remove_unpacked_dir(hash_)
odb.fs.remove(fs_path)
removed = True
return removed
-47
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@@ -1,47 +0,0 @@
from collections import OrderedDict
from dataclasses import dataclass, field
from typing import TYPE_CHECKING, Optional
if TYPE_CHECKING:
from dvc.objects.db import ObjectDB
from dvc.objects.file import HashFile
@dataclass
class Meta:
PARAM_SIZE = "size"
PARAM_NFILES = "nfiles"
PARAM_ISEXEC = "isexec"
size: Optional[int] = field(default=None)
nfiles: Optional[int] = field(default=None)
isexec: Optional[bool] = field(default=False)
obj: Optional["HashFile"] = field(default=None)
odb: Optional["ObjectDB"] = field(default=None)
remote: Optional[str] = field(default=None)
@classmethod
def from_dict(cls, d):
if not d:
return cls()
size = d.pop(cls.PARAM_SIZE, None)
nfiles = d.pop(cls.PARAM_NFILES, None)
isexec = d.pop(cls.PARAM_ISEXEC, False)
return cls(size=size, nfiles=nfiles, isexec=isexec)
def to_dict(self):
ret = OrderedDict()
if self.size is not None:
ret[self.PARAM_SIZE] = self.size
if self.nfiles is not None:
ret[self.PARAM_NFILES] = self.nfiles
if self.isexec:
ret[self.PARAM_ISEXEC] = self.isexec
return ret
-120
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@@ -1,120 +0,0 @@
import errno
import logging
import os
import pickle
from typing import TYPE_CHECKING, Optional
from dvc.objects.errors import ObjectFormatError
from dvc.objects.file import HashFile
if TYPE_CHECKING:
from dvc.fs.base import FileSystem
from dvc.hash_info import HashInfo
from dvc.objects.db import ObjectDB
from dvc.types import AnyPath
logger = logging.getLogger(__name__)
class ReferenceHashFile(HashFile):
PARAM_PATH = "path"
PARAM_HASH = "hash"
PARAM_CHECKSUM = "checksum"
PARAM_FS_CONFIG = "fs_config"
def __init__(
self,
fs_path: "AnyPath",
fs: "FileSystem",
hash_info: "HashInfo",
checksum: Optional[str] = None,
**kwargs,
):
super().__init__(fs_path, fs, hash_info, **kwargs)
self.checksum = checksum or fs.checksum(fs_path)
def __str__(self):
return f"ref object {self.hash_info} -> {self.fs_path}"
def check(self, odb: "ObjectDB", check_hash: bool = True):
assert self.fs
if not self.fs.exists(self.fs_path):
raise FileNotFoundError(
errno.ENOENT, os.strerror(errno.ENOENT), self.fs_path
)
if self.checksum != self._get_checksum():
raise ObjectFormatError(f"{self} is changed")
if check_hash:
self._check_hash(odb)
def _get_checksum(self) -> str:
assert self.fs
return self.fs.checksum(self.fs_path)
def to_bytes(self):
from dvc.fs.repo import RepoFileSystem
# NOTE: dumping reference FS's this way is insecure, as the
# fully parsed remote FS config will include credentials
#
# ReferenceHashFiles should currently only be serialized in
# memory and not to disk
fs_path = self.fs_path
if isinstance(self.fs, RepoFileSystem):
fs_path = self.fs.path.relpath(fs_path, self.fs.root_dir)
dict_ = {
self.PARAM_PATH: fs_path,
self.PARAM_HASH: self.hash_info,
self.PARAM_CHECKSUM: self.checksum,
self.PARAM_FS_CONFIG: self.config_tuple(self.fs),
}
try:
return pickle.dumps(dict_)
except pickle.PickleError as exc:
raise ObjectFormatError(f"Could not pickle {self}") from exc
@classmethod
def from_bytes(cls, data: bytes, fs_cache: Optional[dict] = None):
from dvc.fs import get_fs_cls
from dvc.fs.repo import RepoFileSystem
try:
dict_ = pickle.loads(data)
except pickle.PickleError as exc:
raise ObjectFormatError("ReferenceHashFile is corrupted") from exc
try:
fs_path = dict_[cls.PARAM_PATH]
hash_info = dict_[cls.PARAM_HASH]
except KeyError as exc:
raise ObjectFormatError("ReferenceHashFile is corrupted") from exc
scheme, config_pairs = dict_.get(cls.PARAM_FS_CONFIG)
fs = fs_cache.get((scheme, config_pairs)) if fs_cache else None
if not fs:
config = dict(config_pairs)
if RepoFileSystem.PARAM_REPO_URL in config:
fs = RepoFileSystem(**config)
fs_path = fs.path.join(fs.root_dir, fs_path)
else:
fs_cls = get_fs_cls(config, scheme=scheme)
fs = fs_cls(**config)
return ReferenceHashFile(
fs_path,
fs,
hash_info,
checksum=dict_.get(cls.PARAM_CHECKSUM),
)
@staticmethod
def config_tuple(fs: "FileSystem"):
return (
fs.scheme,
tuple(
(key, value)
for key, value in sorted(
fs.config.items(), key=lambda item: item[0]
)
),
)
-45
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@@ -1,45 +0,0 @@
# type: ignore
import logging
import sys
import time
from functools import wraps
import colorama
logger = logging.getLogger(__name__)
this = sys.modules[__name__]
this.timeout_seconds = 10.0
this.already_displayed = False
this.message = (
"You can cut execution time considerably by using a different "
"`cache.type` configuration.\n"
"See {blue}https://dvc.org/doc/commands-reference/config#cache{reset} "
"for more information.\n"
"To disable this message, run:\n"
"`dvc config cache.slow_link_warning false`".format(
blue=colorama.Fore.BLUE, reset=colorama.Fore.RESET
)
)
def slow_link_guard(f):
@wraps(f)
def wrapper(self, odb, *args, **kwargs):
if this.already_displayed:
return f(self, odb, *args, **kwargs)
if not odb.slow_link_warning or odb.cache_types:
return f(self, odb, *args, **kwargs)
start = time.time()
result = f(self, odb, *args, **kwargs)
delta = time.time() - start
if delta >= this.timeout_seconds:
logger.warning(this.message)
this.already_displayed = True
return result
return wrapper
-348
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@@ -1,348 +0,0 @@
import hashlib
import logging
import os
from concurrent.futures import ThreadPoolExecutor
from functools import partial
from typing import TYPE_CHECKING, Dict, Optional, Tuple
from dvc.exceptions import DvcIgnoreInCollectedDirError
from dvc.hash_info import HashInfo
from dvc.ignore import DvcIgnore
from dvc.objects.file import HashFile
from dvc.progress import Tqdm
from dvc.utils import file_md5, is_exec
from .db.reference import ReferenceObjectDB
from .meta import Meta
if TYPE_CHECKING:
from dvc.fs.base import FileSystem
from dvc.objects.db import ObjectDB
from dvc.types import AnyPath
logger = logging.getLogger(__name__)
_STAGING_MEMFS_PATH = "dvc-staging"
def _upload_file(from_fs_path, fs, odb, upload_odb):
from dvc.utils import tmp_fname
from dvc.utils.stream import HashedStreamReader
fs_path = upload_odb.fs.path
tmp_info = fs_path.join(upload_odb.fs_path, tmp_fname())
with fs.open(from_fs_path, mode="rb", chunk_size=fs.CHUNK_SIZE) as stream:
stream = HashedStreamReader(stream)
size = fs.getsize(from_fs_path)
upload_odb.fs.upload(
stream, tmp_info, desc=fs_path.name(from_fs_path), total=size
)
odb.add(tmp_info, upload_odb.fs, stream.hash_info)
meta = Meta(size=size)
return from_fs_path, meta, odb.get(stream.hash_info)
def _adapt_info(info, scheme):
if scheme == "s3" and "ETag" in info:
info["etag"] = info["ETag"].strip('"')
elif scheme == "gs" and "etag" in info:
import base64
info["etag"] = base64.b64decode(info["etag"]).hex()
elif scheme.startswith("http") and (
"ETag" in info or "Content-MD5" in info
):
info["checksum"] = info.get("ETag") or info.get("Content-MD5")
return info
def _get_file_hash(fs_path, fs, name):
info = _adapt_info(fs.info(fs_path), fs.scheme)
if name in info:
assert not info[name].endswith(".dir")
hash_value = info[name]
elif hasattr(fs, name):
func = getattr(fs, name)
hash_value = func(fs_path)
elif name == "md5":
hash_value = file_md5(fs_path, fs)
else:
raise NotImplementedError
meta = Meta(size=info["size"], isexec=is_exec(info.get("mode", 0)))
hash_info = HashInfo(name, hash_value)
return meta, hash_info
def get_file_hash(fs_path, fs, name, state=None):
if state:
meta, hash_info = state.get( # pylint: disable=assignment-from-none
fs_path, fs
)
if hash_info:
return meta, hash_info
meta, hash_info = _get_file_hash(fs_path, fs, name)
if state:
assert ".dir" not in hash_info.value
state.save(fs_path, fs, hash_info)
return meta, hash_info
def _stage_file(fs_path, fs, name, odb=None, upload_odb=None, dry_run=False):
state = odb.state if odb else None
meta, hash_info = get_file_hash(fs_path, fs, name, state=state)
if upload_odb and not dry_run:
assert odb and name == "md5"
return _upload_file(fs_path, fs, odb, upload_odb)
if dry_run:
obj = HashFile(fs_path, fs, hash_info)
else:
odb.add(fs_path, fs, hash_info, hardlink=False)
obj = odb.get(hash_info)
return fs_path, meta, obj
def _build_objects(
fs_path,
fs,
name,
dvcignore=None,
jobs=None,
no_progress_bar=False,
**kwargs,
):
if dvcignore:
walk_iterator = dvcignore.find(fs, fs_path)
else:
walk_iterator = fs.find(fs_path)
with Tqdm(
unit="md5",
desc="Computing file/dir hashes (only done once)",
disable=no_progress_bar,
) as pbar:
worker = pbar.wrap_fn(
partial(
_stage_file,
fs=fs,
name=name,
**kwargs,
)
)
with ThreadPoolExecutor(
max_workers=jobs if jobs is not None else fs.hash_jobs
) as executor:
yield from executor.map(worker, walk_iterator)
def _iter_objects(fs_path, fs, name, **kwargs):
yield from _build_objects(fs_path, fs, name, **kwargs)
def _build_tree(fs_path, fs, name, **kwargs):
from .tree import Tree
tree_meta = Meta(size=0, nfiles=0)
tree = Tree(None, None, None)
for file_fs_path, meta, obj in _iter_objects(fs_path, fs, name, **kwargs):
if DvcIgnore.DVCIGNORE_FILE == fs.path.name(file_fs_path):
raise DvcIgnoreInCollectedDirError(fs.path.parent(file_fs_path))
# NOTE: this is lossy transformation:
# "hey\there" -> "hey/there"
# "hey/there" -> "hey/there"
# The latter is fine filename on Windows, which
# will transform to dir/file on back transform.
#
# Yes, this is a BUG, as long as we permit "/" in
# filenames on Windows and "\" on Unix
key = fs.path.relparts(file_fs_path, fs_path)
assert key
tree.add(key, meta, obj.hash_info)
tree_meta.size += meta.size or 0
tree_meta.nfiles += 1
return tree_meta, tree
def _stage_tree(fs_path, fs, fs_info, name, odb=None, **kwargs):
from .tree import Tree
value = fs_info.get(name)
if odb and value:
hash_info = HashInfo(name, value)
try:
tree = Tree.load(odb, hash_info)
return Meta(nfiles=len(tree)), tree
except FileNotFoundError:
pass
meta, tree = _build_tree(fs_path, fs, name, odb=odb, **kwargs)
state = odb.state if odb and odb.state else None
hash_info = None
if state:
_, hash_info = state.get( # pylint: disable=assignment-from-none
fs_path, fs
)
tree.digest(hash_info=hash_info)
odb.add(tree.fs_path, tree.fs, tree.hash_info, hardlink=False)
raw = odb.get(tree.hash_info)
# cleanup unneeded memfs tmpfile and return tree based on the
# ODB fs/path
if odb.fs != tree.fs:
tree.fs.remove(tree.fs_path)
tree.fs = raw.fs
tree.fs_path = raw.fs_path
return meta, tree
_url_cache: Dict[str, str] = {}
def _make_staging_url(
fs: "FileSystem", odb: "ObjectDB", fs_path: Optional[str]
):
from dvc.scheme import Schemes
url = f"{Schemes.MEMORY}://{_STAGING_MEMFS_PATH}"
if fs_path is not None:
if odb.fs.scheme == Schemes.LOCAL:
fs_path = os.path.abspath(fs_path)
if fs_path not in _url_cache:
_url_cache[fs_path] = hashlib.sha256(
fs_path.encode("utf-8")
).hexdigest()
url = fs.path.join(url, _url_cache[fs_path])
return url
def _get_staging(odb: "ObjectDB") -> "ObjectDB":
"""Return an ODB that can be used for staging objects.
Staging will be a reference ODB stored in the the global memfs.
"""
from dvc.fs.memory import MemoryFileSystem
fs = MemoryFileSystem()
fs_path = _make_staging_url(fs, odb, odb.fs_path)
state = odb.state
return ReferenceObjectDB(fs, fs_path, state=state)
def _load_from_state(odb, staging, fs_path, fs, name):
from dvc.objects.errors import ObjectFormatError
from . import check, load
from .tree import Tree
state = odb.state
meta, hash_info = state.get(fs_path, fs)
if hash_info:
for odb_ in (odb, staging):
if odb_.exists(hash_info):
try:
obj = load(odb_, hash_info)
check(odb_, obj, check_hash=False)
if isinstance(obj, Tree):
meta.nfiles = len(obj)
assert obj.hash_info.name == name
return odb_, meta, obj
except (ObjectFormatError, FileNotFoundError):
pass
raise FileNotFoundError
def _stage_external_tree_info(odb, tree, name):
# NOTE: used only for external outputs. Initial reasoning was to be
# able to validate .dir files right in the workspace (e.g. check s3
# etag), but could be dropped for manual validation with regular md5,
# that would be universal for all clouds.
assert odb and name != "md5"
odb.add(tree.fs_path, tree.fs, tree.hash_info)
raw = odb.get(tree.hash_info)
_, hash_info = get_file_hash(raw.fs_path, raw.fs, name, state=odb.state)
tree.fs_path = raw.fs_path
tree.fs = raw.fs
tree.hash_info.name = hash_info.name
tree.hash_info.value = hash_info.value
if not tree.hash_info.value.endswith(".dir"):
tree.hash_info.value += ".dir"
return tree
def stage(
odb: "ObjectDB",
fs_path: "AnyPath",
fs: "FileSystem",
name: str,
upload: bool = False,
dry_run: bool = False,
**kwargs,
) -> Tuple["ObjectDB", "Meta", "HashFile"]:
"""Stage (prepare) objects from the given path for addition to an ODB.
Returns at tuple of (staging_odb, object) where addition to the ODB can
be completed by transferring the object from staging to the dest ODB.
If dry_run is True, object hashes will be computed and returned, but file
objects themselves will not be added to the staging ODB (i.e. the resulting
file objects cannot transferred from staging to another ODB).
If upload is True, files will be uploaded to a temporary path on the dest
ODB filesystem, and staged objects will reference the uploaded path rather
than the original source path.
"""
assert fs_path
# assert scheme(fs_path) == fs.scheme
details = fs.info(fs_path)
staging = _get_staging(odb)
if odb:
try:
return _load_from_state(odb, staging, fs_path, fs, name)
except FileNotFoundError:
pass
if details["type"] == "directory":
meta, obj = _stage_tree(
fs_path,
fs,
details,
name,
odb=staging,
upload_odb=odb if upload else None,
dry_run=dry_run,
**kwargs,
)
logger.debug("staged tree '%s'", obj)
if name != "md5":
obj = _stage_external_tree_info(odb, obj, name)
else:
_, meta, obj = _stage_file(
fs_path,
fs,
name,
odb=staging,
upload_odb=odb if upload else None,
dry_run=dry_run,
)
if odb and odb.state and obj.hash_info:
odb.state.save(fs_path, fs, obj.hash_info)
return staging, meta, obj
-190
View File
@@ -1,190 +0,0 @@
import logging
from typing import TYPE_CHECKING, Dict, Iterable, NamedTuple, Optional, Set
from dvc.hash_info import HashInfo
from dvc.scheme import Schemes
from .tree import Tree
if TYPE_CHECKING:
from dvc.objects.db import ObjectDB
from dvc.objects.file import HashFile
from .db.index import ObjectDBIndexBase
logger = logging.getLogger(__name__)
class StatusResult(NamedTuple):
exists: Set["HashInfo"]
missing: Set["HashInfo"]
class CompareStatusResult(NamedTuple):
ok: Set["HashInfo"]
missing: Set["HashInfo"]
new: Set["HashInfo"]
deleted: Set["HashInfo"]
def _indexed_dir_hashes(odb, index, dir_objs, name, cache_odb, jobs=None):
# Validate our index by verifying all indexed .dir hashes
# still exist on the remote
dir_hashes = set(dir_objs.keys())
indexed_dirs = set(index.dir_hashes())
indexed_dir_exists = set()
if indexed_dirs:
indexed_dir_exists.update(odb.list_hashes_exists(indexed_dirs, jobs))
missing_dirs = indexed_dirs.difference(indexed_dir_exists)
if missing_dirs:
logger.debug(
"Remote cache missing indexed .dir hashes '%s', "
"clearing remote index",
", ".join(missing_dirs),
)
index.clear()
# Check if non-indexed (new) dir hashes exist on remote
dir_exists = dir_hashes.intersection(indexed_dir_exists)
dir_exists.update(odb.list_hashes_exists(dir_hashes - dir_exists, jobs))
# If .dir hash exists in the ODB, assume directory contents
# also exists
for dir_hash in dir_exists:
tree = dir_objs.get(dir_hash)
if not tree:
try:
tree = Tree.load(cache_odb, HashInfo(name, dir_hash))
except FileNotFoundError:
continue
file_hashes = [oid.value for _, _, oid in tree]
if dir_hash not in index:
logger.debug(
"Indexing new .dir '%s' with '%s' nested files",
dir_hash,
len(file_hashes),
)
index.update([dir_hash], file_hashes)
yield from file_hashes
yield tree.hash_info.value
def status(
odb: "ObjectDB",
obj_ids: Iterable["HashInfo"],
name: Optional[str] = None,
index: Optional["ObjectDBIndexBase"] = None,
cache_odb: Optional["ObjectDB"] = None,
shallow: bool = True,
jobs: Optional[int] = None,
**kwargs,
) -> "StatusResult":
"""Return status of whether or not the specified objects exist odb.
If cache_odb is set, trees will be loaded from cache_odb instead of odb
when needed.
Status is returned as a tuple of:
exists: objs that exist in odb
missing: objs that do not exist in ODB
"""
logger.debug("Preparing to collect status from '%s'", odb.fs_path)
if not name:
name = odb.fs.PARAM_CHECKSUM
if cache_odb is None:
cache_odb = odb
hash_infos: Dict[str, "HashInfo"] = {}
dir_objs: Dict[str, Optional["HashFile"]] = {}
for hash_info in obj_ids:
assert hash_info.value
if hash_info.isdir:
if shallow:
tree = None
else:
tree = Tree.load(cache_odb, hash_info)
for _, _, oid in tree:
assert oid and oid.value
hash_infos[oid.value] = oid
if index:
dir_objs[hash_info.value] = tree
hash_infos[hash_info.value] = hash_info
if odb.fs.scheme == Schemes.MEMORY:
# assume memfs staged objects already exist
return StatusResult(set(hash_infos.values()), set())
hashes: Set[str] = set(hash_infos.keys())
exists: Set[str] = set()
logger.debug("Collecting status from '%s'", odb.fs_path)
if index and hashes:
if dir_objs:
exists = hashes.intersection(
_indexed_dir_hashes(
odb, index, dir_objs, name, cache_odb, jobs=jobs
)
)
hashes.difference_update(exists)
if hashes:
exists.update(index.intersection(hashes))
hashes.difference_update(exists)
if hashes:
exists.update(odb.hashes_exist(hashes, name=odb.fs_path, jobs=jobs))
return StatusResult(
{hash_infos[hash_] for hash_ in exists},
{hash_infos[hash_] for hash_ in (hashes - exists)},
)
def compare_status(
src: "ObjectDB",
dest: "ObjectDB",
obj_ids: Iterable["HashInfo"],
log_missing: bool = True,
check_deleted: bool = True,
src_index: Optional["ObjectDBIndexBase"] = None,
dest_index: Optional["ObjectDBIndexBase"] = None,
jobs: Optional[int] = None,
**kwargs,
) -> "CompareStatusResult":
"""Compare status for the specified objects between two ODBs.
Status is returned as a tuple of:
ok: hashes that exist in both src and dest
missing: hashes that do not exist in neither src nor dest
new: hashes that only exist in src
deleted: hashes that only exist in dest
"""
if "cache_odb" not in kwargs:
kwargs["cache_odb"] = src
dest_exists, dest_missing = status(
dest, obj_ids, index=dest_index, jobs=jobs, **kwargs
)
# for transfer operations we can skip src status check when all objects
# already exist in dest
if dest_missing or check_deleted:
src_exists, src_missing = status(
src, obj_ids, index=src_index, jobs=jobs, **kwargs
)
else:
src_exists = dest_exists
src_missing = set()
result = CompareStatusResult(
src_exists & dest_exists,
src_missing & dest_missing,
src_exists - dest_exists,
dest_exists - src_exists,
)
if log_missing and result.missing:
missing_desc = "\n".join(
f"name: {hash_info.obj_name}, {hash_info}"
for hash_info in result.missing
)
logger.warning(
"Some of the cache files do not exist neither locally "
f"nor on remote. Missing cache files:\n{missing_desc}"
)
return result
-179
View File
@@ -1,179 +0,0 @@
import errno
import logging
from functools import partial, wraps
from typing import TYPE_CHECKING, Any, Callable, Iterable, Optional
from funcy import split
from dvc.progress import Tqdm
from dvc.utils.threadpool import ThreadPoolExecutor
if TYPE_CHECKING:
from dvc.hash_info import HashInfo
from dvc.objects.db import ObjectDB
from .db.index import ObjectDBIndexBase
from .tree import Tree
logger = logging.getLogger(__name__)
def _log_exceptions(func):
@wraps(func)
def wrapper(fs_path, *args, **kwargs):
try:
func(fs_path, *args, **kwargs)
return 0
except Exception as exc: # pylint: disable=broad-except
# NOTE: this means we ran out of file descriptors and there is no
# reason to try to proceed, as we will hit this error anyways.
# pylint: disable=no-member
if isinstance(exc, OSError) and exc.errno == errno.EMFILE:
raise
logger.exception("failed to transfer '%s'", fs_path)
return 1
return wrapper
def find_tree_by_obj_id(
odbs: Iterable[Optional["ObjectDB"]], obj_id: "HashInfo"
) -> Optional["Tree"]:
from dvc.objects.errors import ObjectFormatError
from .tree import Tree
for odb in odbs:
if odb is not None:
try:
return Tree.load(odb, obj_id)
except (FileNotFoundError, ObjectFormatError):
pass
return None
def _do_transfer(
src: "ObjectDB",
dest: "ObjectDB",
obj_ids: Iterable["HashInfo"],
missing_ids: Iterable["HashInfo"],
processor: Callable,
src_index: Optional["ObjectDBIndexBase"] = None,
dest_index: Optional["ObjectDBIndexBase"] = None,
cache_odb: Optional["ObjectDB"] = None,
**kwargs: Any,
):
from dvc.exceptions import FileTransferError
dir_ids, file_ids = split(lambda hash_info: hash_info.isdir, obj_ids)
total_fails = 0
succeeded_dir_objs = []
all_file_ids = set(file_ids)
for dir_hash in dir_ids:
dir_obj = find_tree_by_obj_id([cache_odb, src], dir_hash)
assert dir_obj
entry_ids = {oid for _, _, oid in dir_obj}
bound_file_ids = all_file_ids & entry_ids
all_file_ids -= entry_ids
dir_fails = sum(processor(bound_file_ids))
if dir_fails:
logger.debug(
"failed to upload full contents of '%s', "
"aborting .dir file upload",
dir_obj.name,
)
logger.error(
"failed to upload '%s' to '%s'",
src.get(dir_obj.hash_info).fs_path,
dest.get(dir_obj.hash_info).fs_path,
)
total_fails += dir_fails + 1
elif entry_ids.intersection(missing_ids):
# if for some reason a file contained in this dir is
# missing both locally and in the remote, we want to
# push whatever file content we have, but should not
# push .dir file
logger.debug(
"directory '%s' contains missing files,"
"skipping .dir file upload",
dir_obj.name,
)
else:
is_dir_failed = sum(processor([dir_obj.hash_info]))
total_fails += is_dir_failed
if not is_dir_failed:
succeeded_dir_objs.append(dir_obj)
# insert the rest
total_fails += sum(processor(all_file_ids))
if total_fails:
if src_index:
src_index.clear()
raise FileTransferError(total_fails)
# index successfully pushed dirs
if dest_index:
for dir_obj in succeeded_dir_objs:
file_hashes = {oid.value for _, _, oid in dir_obj}
logger.debug(
"Indexing pushed dir '%s' with '%s' nested files",
dir_obj.hash_info,
len(file_hashes),
)
assert dir_obj.hash_info and dir_obj.hash_info.value
dest_index.update([dir_obj.hash_info.value], file_hashes)
def transfer(
src: "ObjectDB",
dest: "ObjectDB",
obj_ids: Iterable["HashInfo"],
jobs: Optional[int] = None,
verify: bool = False,
hardlink: bool = False,
**kwargs,
) -> int:
"""Transfer (copy) the specified objects from one ODB to another.
Returns the number of successfully transferred objects
"""
from .status import compare_status
logger.debug(
"Preparing to transfer data from '%s' to '%s'",
src.fs_path,
dest.fs_path,
)
if src == dest:
return 0
status = compare_status(
src, dest, obj_ids, check_deleted=False, jobs=jobs, **kwargs
)
if not status.new:
return 0
def func(hash_info: "HashInfo") -> None:
obj = src.get(hash_info)
return dest.add(
obj.fs_path,
obj.fs,
obj.hash_info,
verify=verify,
hardlink=hardlink,
)
total = len(status.new)
jobs = jobs or dest.fs.jobs
with Tqdm(total=total, unit="file", desc="Transferring") as pbar:
with ThreadPoolExecutor(max_workers=jobs) as executor:
wrapped_func = pbar.wrap_fn(_log_exceptions(func))
processor = partial(executor.imap_unordered, wrapped_func)
_do_transfer(
src, dest, status.new, status.missing, processor, **kwargs
)
return total
-294
View File
@@ -1,294 +0,0 @@
import json
import logging
import posixpath
from typing import TYPE_CHECKING, Dict, Iterable, Optional, Tuple
from funcy import cached_property
from dvc.objects.errors import ObjectFormatError
from dvc.objects.file import HashFile
from .stage import get_file_hash
if TYPE_CHECKING:
from dvc.hash_info import HashInfo
from dvc.objects.db import ObjectDB
from .meta import Meta
logger = logging.getLogger(__name__)
class TreeError(Exception):
pass
def _try_load(
odbs: Iterable["ObjectDB"],
hash_info: "HashInfo",
) -> Optional["HashFile"]:
for odb in odbs:
if not odb:
continue
try:
return Tree.load(odb, hash_info)
except (FileNotFoundError, ObjectFormatError):
pass
return None
class Tree(HashFile):
PARAM_RELPATH = "relpath"
def __init__(self, *args, **kwargs):
super().__init__(*args, **kwargs)
self._dict: Dict[Tuple[str], Tuple["Meta", "HashInfo"]] = {}
@cached_property
def _trie(self):
from pygtrie import Trie
return Trie(self._dict)
def add(self, key: Tuple[str], meta: "Meta", oid: "HashInfo"):
self.__dict__.pop("trie", None)
self._dict[key] = (meta, oid)
def digest(self, hash_info: Optional["HashInfo"] = None):
from dvc.fs.memory import MemoryFileSystem
from dvc.utils import tmp_fname
memfs = MemoryFileSystem()
fs_path = "memory://{}".format(tmp_fname(""))
with memfs.open(fs_path, "wb") as fobj:
fobj.write(self.as_bytes())
self.fs = memfs
self.fs_path = fs_path
if hash_info:
self.hash_info = hash_info
else:
_, self.hash_info = get_file_hash(fs_path, memfs, "md5")
assert self.hash_info.value
self.hash_info.value += ".dir"
def _load(self, key, meta, hash_info):
if hash_info and hash_info.isdir and not meta.obj:
meta.obj = _try_load([meta.odb, meta.remote], hash_info)
if meta.obj:
for ikey, value in meta.obj.iteritems():
self._trie[key + ikey] = value
self._dict[key + ikey] = value
def iteritems(self, prefix=None):
kwargs = {}
if prefix:
kwargs = {"prefix": prefix}
item = self._trie.longest_prefix(prefix)
if item:
key, (meta, hash_info) = item
self._load(key, meta, hash_info)
for key, (meta, hash_info) in self._trie.iteritems(**kwargs):
self._load(key, meta, hash_info)
yield key, (meta, hash_info)
def shortest_prefix(self, *args, **kwargs):
return self._trie.shortest_prefix(*args, **kwargs)
def __len__(self):
return len(self._dict)
def __iter__(self):
yield from (
(key, value[0], value[1]) for key, value in self._dict.items()
)
def as_dict(self):
return self._dict.copy()
def as_list(self):
from operator import itemgetter
# Sorting the list by path to ensure reproducibility
return sorted(
(
{
# NOTE: not using hash_info.to_dict() because we don't want
# size/nfiles fields at this point.
oid.name: oid.value,
self.PARAM_RELPATH: posixpath.sep.join(parts),
}
for parts, _, oid in self # noqa: B301
),
key=itemgetter(self.PARAM_RELPATH),
)
def as_bytes(self):
return json.dumps(self.as_list(), sort_keys=True).encode("utf-8")
@classmethod
def from_list(cls, lst):
from dvc.hash_info import HashInfo
tree = cls(None, None, None)
for _entry in lst:
entry = _entry.copy()
relpath = entry.pop(cls.PARAM_RELPATH)
parts = tuple(relpath.split(posixpath.sep))
hash_info = HashInfo.from_dict(entry)
tree.add(parts, None, hash_info)
return tree
@classmethod
def load(cls, odb, hash_info):
obj = odb.get(hash_info)
try:
with obj.fs.open(obj.fs_path, "r") as fobj:
raw = json.load(fobj)
except ValueError as exc:
raise ObjectFormatError(f"{obj} is corrupted") from exc
if not isinstance(raw, list):
logger.error(
"dir cache file format error '%s' [skipping the file]",
obj.fs_path,
)
raise ObjectFormatError(f"{obj} is corrupted")
tree = cls.from_list(raw)
tree.fs_path = obj.fs_path
tree.fs = obj.fs
tree.hash_info = hash_info
return tree
def filter(self, prefix: Tuple[str]) -> Optional["Tree"]:
"""Return a filtered copy of this tree that only contains entries
inside prefix.
The returned tree will contain the original tree's hash_info and
fs_path.
Returns an empty tree if no object exists at the specified prefix.
"""
tree = Tree(self.fs_path, self.fs, self.hash_info)
try:
for key, (meta, oid) in self._trie.items(prefix):
tree.add(key, meta, oid)
except KeyError:
pass
return tree
def get(self, odb, prefix: Tuple[str]) -> Optional[HashFile]:
"""Return object at the specified prefix in this tree.
Returns None if no object exists at the specified prefix.
"""
_, oid = self._dict.get(prefix) or (None, None)
if oid:
return odb.get(oid)
tree = Tree(None, None, None)
depth = len(prefix)
try:
for key, (meta, entry_oid) in self._trie.items(prefix):
tree.add(key[depth:], meta, entry_oid)
except KeyError:
return None
tree.digest()
return tree
def ls(self, prefix=None):
kwargs = {}
if prefix:
kwargs["prefix"] = prefix
meta, hash_info = self._trie.get(prefix, (None, None))
if hash_info and hash_info.isdir and meta and not meta.obj:
raise TreeError
ret = []
def node_factory(_, key, children, *args):
if key == prefix:
list(children)
else:
ret.append(key[-1])
self._trie.traverse(node_factory, **kwargs)
return ret
def du(odb, tree):
try:
return sum(
odb.fs.getsize(odb.hash_to_path(oid.value)) for _, _, oid in tree
)
except FileNotFoundError:
return None
def _diff(ancestor, other, allow_removed=False):
from dictdiffer import diff
from dvc.exceptions import MergeError
allowed = ["add"]
if allow_removed:
allowed.append("remove")
result = list(diff(ancestor, other))
for typ, _, _ in result:
if typ not in allowed:
raise MergeError(
"unable to auto-merge directories with diff that contains "
f"'{typ}'ed files"
)
return result
def _merge(ancestor, our, their):
import copy
from dictdiffer import patch
our_diff = _diff(ancestor, our)
if not our_diff:
return copy.deepcopy(their)
their_diff = _diff(ancestor, their)
if not their_diff:
return copy.deepcopy(our)
# make sure there are no conflicting files
_diff(our, their, allow_removed=True)
return patch(our_diff + their_diff, ancestor)
def merge(odb, ancestor_info, our_info, their_info):
from . import load
assert our_info
assert their_info
if ancestor_info:
ancestor = load(odb, ancestor_info)
else:
ancestor = Tree(None, None, None)
our = load(odb, our_info)
their = load(odb, their_info)
merged_dict = _merge(ancestor.as_dict(), our.as_dict(), their.as_dict())
merged = Tree(None, None, None)
for key, (meta, oid) in merged_dict.items():
merged.add(key, meta, oid)
merged.digest()
return merged
+76 -27
View File
@@ -3,15 +3,37 @@
import logging
from typing import TYPE_CHECKING, Iterable, Optional
from dvc.data.db import get_index
from funcy import cached_property
from dvc_data.hashfile.db import get_index
if TYPE_CHECKING:
from dvc.hash_info import HashInfo
from dvc.objects.db import ObjectDB
from dvc_data.hashfile.db import HashFileDB
from dvc_data.hashfile.hash_info import HashInfo
from dvc_data.hashfile.status import CompareStatusResult
logger = logging.getLogger(__name__)
class Remote:
def __init__(self, path, fs, **config):
self.path = path
self.fs = fs
self.worktree = config.pop("worktree", False)
self.config = config
@cached_property
def odb(self):
from dvc_data.hashfile.db import get_odb
path = self.path
if self.worktree:
path = self.fs.path.join(path, ".dvc", "cache")
return get_odb(self.fs, path, **self.config)
class DataCloud:
"""Class that manages dvc remotes.
@@ -26,18 +48,23 @@ class DataCloud:
def __init__(self, repo):
self.repo = repo
def get_remote_odb(
def get_remote(
self,
name: Optional[str] = None,
command: str = "<command>",
) -> "ObjectDB":
) -> "Remote":
from dvc.config import NoRemoteError
if not name:
name = self.repo.config["core"].get("remote")
if name:
return self._init_odb(name)
from dvc.fs import get_cloud_fs
cls, config, fs_path = get_cloud_fs(self.repo, name=name)
fs = cls(**config)
config["tmp_dir"] = self.repo.index_db_dir
return Remote(fs_path, fs, **config)
if bool(self.repo.config["remote"]):
error_msg = (
@@ -54,20 +81,46 @@ class DataCloud:
raise NoRemoteError(error_msg)
def _init_odb(self, name):
from dvc.data.db import get_odb
from dvc.fs import get_cloud_fs
def get_remote_odb(
self,
name: Optional[str] = None,
command: str = "<command>",
) -> "HashFileDB":
remote = self.get_remote(name=name, command=command)
return remote.odb
cls, config, fs_path = get_cloud_fs(self.repo, name=name)
config["tmp_dir"] = self.repo.index_db_dir
return get_odb(cls(**config), fs_path, **config)
def _log_missing(self, status: "CompareStatusResult"):
if status.missing:
missing_desc = "\n".join(
f"name: {hash_info.obj_name}, {hash_info}"
for hash_info in status.missing
)
logger.warning(
"Some of the cache files do not exist neither locally "
f"nor on remote. Missing cache files:\n{missing_desc}"
)
def transfer(
self,
src_odb: "HashFileDB",
dest_odb: "HashFileDB",
objs: Iterable["HashInfo"],
**kwargs,
):
from dvc.exceptions import FileTransferError
from dvc_data.hashfile.transfer import TransferError, transfer
try:
return transfer(src_odb, dest_odb, objs, **kwargs)
except TransferError as exc:
raise FileTransferError(exc.fails) from exc
def push(
self,
objs: Iterable["HashInfo"],
jobs: Optional[int] = None,
remote: Optional[str] = None,
odb: Optional["ObjectDB"] = None,
odb: Optional["HashFileDB"] = None,
):
"""Push data items in a cloud-agnostic way.
@@ -78,17 +131,15 @@ class DataCloud:
By default remote from core.remote config option is used.
odb: optional ODB to push to. Overrides remote.
"""
from dvc.data.transfer import transfer
if not odb:
odb = self.get_remote_odb(remote, "push")
return transfer(
odb = odb or self.get_remote_odb(remote, "push")
return self.transfer(
self.repo.odb.local,
odb,
objs,
jobs=jobs,
dest_index=get_index(odb),
cache_odb=self.repo.odb.local,
validate_status=self._log_missing,
)
def pull(
@@ -96,7 +147,7 @@ class DataCloud:
objs: Iterable["HashInfo"],
jobs: Optional[int] = None,
remote: Optional[str] = None,
odb: Optional["ObjectDB"] = None,
odb: Optional["HashFileDB"] = None,
):
"""Pull data items in a cloud-agnostic way.
@@ -107,11 +158,8 @@ class DataCloud:
By default remote from core.remote config option is used.
odb: optional ODB to pull from. Overrides remote.
"""
from dvc.data.transfer import transfer
if not odb:
odb = self.get_remote_odb(remote, "pull")
return transfer(
odb = odb or self.get_remote_odb(remote, "pull")
return self.transfer(
odb,
self.repo.odb.local,
objs,
@@ -119,6 +167,7 @@ class DataCloud:
src_index=get_index(odb),
cache_odb=self.repo.odb.local,
verify=odb.verify,
validate_status=self._log_missing,
)
def status(
@@ -126,7 +175,7 @@ class DataCloud:
objs: Iterable["HashInfo"],
jobs: Optional[int] = None,
remote: Optional[str] = None,
odb: Optional["ObjectDB"] = None,
odb: Optional["HashFileDB"] = None,
log_missing: bool = True,
):
"""Check status of data items in a cloud-agnostic way.
@@ -141,7 +190,7 @@ class DataCloud:
log_missing: log warning messages if file doesn't exist
neither in cache, neither in cloud.
"""
from dvc.data.status import compare_status
from dvc_data.hashfile.status import compare_status
if not odb:
odb = self.get_remote_odb(remote, "status")
@@ -157,5 +206,5 @@ class DataCloud:
def get_url_for(self, remote, checksum):
odb = self.get_remote_odb(remote)
path = odb.hash_to_path(checksum)
path = odb.oid_to_path(checksum)
return odb.fs.unstrip_protocol(path)
+12 -4
View File
@@ -18,7 +18,7 @@ SCHEMA: Mapping[str, Any] = {
}
def _get(stage, p, info):
def _get(stage, p, info, fs_config=None):
if info and info.get(RepoDependency.PARAM_REPO):
repo = info.pop(RepoDependency.PARAM_REPO)
return RepoDependency(repo, stage, p, info)
@@ -27,7 +27,7 @@ def _get(stage, p, info):
params = info.pop(ParamsDependency.PARAM_PARAMS)
return ParamsDependency(stage, p, params)
return Dependency(stage, p, info)
return Dependency(stage, p, info, fs_config=fs_config)
def loadd_from(stage, d_list):
@@ -38,10 +38,18 @@ def loadd_from(stage, d_list):
return ret
def loads_from(stage, s_list, erepo=None):
def loads_from(stage, s_list, erepo=None, fs_config=None):
assert isinstance(s_list, list)
info = {RepoDependency.PARAM_REPO: erepo} if erepo else {}
return [_get(stage, s, info.copy()) for s in s_list]
return [
_get(
stage,
s,
info.copy(),
fs_config=fs_config,
)
for s in s_list
]
def _merge_params(s_list):
+9 -11
View File
@@ -8,8 +8,8 @@ import dpath.util
from voluptuous import Any
from dvc.exceptions import DvcException
from dvc.hash_info import HashInfo
from dvc.utils.serialize import LOADERS, ParseError
from dvc.utils.serialize import ParseError, load_path
from dvc_data.hashfile.hash_info import HashInfo
from .base import Dependency
@@ -39,14 +39,15 @@ class ParamsDependency(Dependency):
def __init__(self, stage, path, params=None, repo=None):
self.params = list(params) if params else []
info = (
{self.PARAM_PARAMS: params} if isinstance(params, dict) else None
)
hash_info = HashInfo()
if isinstance(params, dict):
hash_info = HashInfo(self.PARAM_PARAMS, params)
repo = repo or stage.repo
path = path or os.path.join(repo.root_dir, self.DEFAULT_PARAMS_FILE)
super().__init__(stage, path, info=info, repo=repo)
super().__init__(stage, path, repo=repo)
self.hash_info = hash_info
def dumpd(self):
def dumpd(self, **kwargs):
ret = super().dumpd()
if not self.hash_info:
ret[self.PARAM_PARAMS] = self.params or {}
@@ -139,12 +140,9 @@ class ParamsDependency(Dependency):
)
def read_file(self):
_, ext = os.path.splitext(self.fs_path)
loader = LOADERS[ext]
self.validate_filepath()
try:
return loader(self.fs_path, fs=self.repo.fs)
return load_path(self.fs_path, self.repo.fs)
except ParseError as exc:
raise BadParamFileError(
f"Unable to read parameters from '{self}'"
+37 -36
View File
@@ -5,12 +5,14 @@ from typing import TYPE_CHECKING, Dict, Optional, Set, Tuple
from voluptuous import Required
from dvc.prompt import confirm
from .base import Dependency
if TYPE_CHECKING:
from dvc.hash_info import HashInfo
from dvc.objects.db import ObjectDB
from dvc.objects.file import HashFile
from dvc_data.hashfile.file import HashFile
from dvc_data.hashfile.hash_info import HashInfo
from dvc_objects.db import ObjectDB
class RepoDependency(Dependency):
@@ -29,7 +31,7 @@ class RepoDependency(Dependency):
def __init__(self, def_repo, stage, *args, **kwargs):
self.def_repo = def_repo
self._staged_objs: Dict[str, "HashFile"] = {}
self._objs: Dict[str, "HashFile"] = {}
super().__init__(stage, *args, **kwargs)
def _parse_path(self, fs, fs_path):
@@ -57,11 +59,11 @@ class RepoDependency(Dependency):
def save(self):
pass
def dumpd(self):
def dumpd(self, **kwargs):
return {self.PARAM_PATH: self.def_path, self.PARAM_REPO: self.def_repo}
def download(self, to, jobs=None):
from dvc.data.checkout import checkout
from dvc_data.hashfile.checkout import checkout
for odb, objs in self.get_used_objs().items():
self.repo.cloud.pull(objs, jobs=jobs, odb=odb)
@@ -72,8 +74,9 @@ class RepoDependency(Dependency):
to.fs,
obj,
self.repo.odb.local,
dvcignore=None,
ignore=None,
state=self.repo.state,
prompt=confirm,
)
def update(self, rev=None):
@@ -98,25 +101,23 @@ class RepoDependency(Dependency):
self, obj_only=False, **kwargs
) -> Tuple[Dict[Optional["ObjectDB"], Set["HashInfo"]], "HashFile"]:
from dvc.config import NoRemoteError
from dvc.data.stage import stage
from dvc.data.tree import Tree, TreeError
from dvc.exceptions import NoOutputOrStageError, PathMissingError
from dvc.utils import as_posix
from dvc_data.hashfile.build import build
from dvc_data.hashfile.tree import Tree, TreeError
local_odb = self.repo.odb.local
locked = kwargs.pop("locked", True)
with self._make_repo(
locked=locked, cache_dir=local_odb.cache_dir
) as repo:
with self._make_repo(locked=locked, cache_dir=local_odb.path) as repo:
used_obj_ids = defaultdict(set)
rev = repo.get_rev()
if locked and self.def_repo.get(self.PARAM_REV_LOCK) is None:
self.def_repo[self.PARAM_REV_LOCK] = rev
path = os.path.abspath(os.path.join(repo.root_dir, self.def_path))
if not obj_only:
try:
for odb, obj_ids in repo.used_objs(
[path],
[os.path.join(repo.root_dir, self.def_path)],
force=True,
jobs=kwargs.get("jobs"),
recursive=True,
@@ -130,65 +131,65 @@ class RepoDependency(Dependency):
pass
try:
staging, _, staged_obj = stage(
object_store, _, obj = build(
local_odb,
path,
repo.repo_fs,
as_posix(self.def_path),
repo.dvcfs,
local_odb.fs.PARAM_CHECKSUM,
)
except (FileNotFoundError, TreeError) as exc:
raise PathMissingError(
self.def_path, self.def_repo[self.PARAM_URL]
) from exc
staging = copy(staging)
staging.read_only = True
object_store = copy(object_store)
object_store.read_only = True
self._staged_objs[rev] = staged_obj
used_obj_ids[staging].add(staged_obj.hash_info)
if isinstance(staged_obj, Tree):
used_obj_ids[staging].update(oid for _, _, oid in staged_obj)
return used_obj_ids, staged_obj
self._objs[rev] = obj
used_obj_ids[object_store].add(obj.hash_info)
if isinstance(obj, Tree):
used_obj_ids[object_store].update(oid for _, _, oid in obj)
return used_obj_ids, obj
def _check_circular_import(self, odb, obj_ids):
from dvc.data.db.reference import ReferenceObjectDB
from dvc.data.tree import Tree
from dvc.exceptions import CircularImportError
from dvc.fs.repo import RepoFileSystem
from dvc.fs.dvc import DvcFileSystem
from dvc_data.hashfile.db.reference import ReferenceHashFileDB
from dvc_data.hashfile.tree import Tree
if not isinstance(odb, ReferenceObjectDB):
if not isinstance(odb, ReferenceHashFileDB):
return
def iter_objs():
for hash_info in obj_ids:
if hash_info.isdir:
tree = Tree.load(odb, hash_info)
yield from (odb.get(oid) for _, _, oid in tree)
yield from (odb.get(hi.value) for _, _, hi in tree)
else:
yield odb.get(hash_info)
yield odb.get(hash_info.value)
checked_urls = set()
for obj in iter_objs():
if not isinstance(obj.fs, RepoFileSystem):
if not isinstance(obj.fs, DvcFileSystem):
continue
if (
obj.fs.repo_url in checked_urls
or obj.fs.root_dir in checked_urls
or obj.fs.repo.root_dir in checked_urls
):
continue
self_url = self.repo.url or self.repo.root_dir
if (
obj.fs.repo_url is not None
and obj.fs.repo_url == self_url
or obj.fs.root_dir == self.repo.root_dir
or obj.fs.repo.root_dir == self.repo.root_dir
):
raise CircularImportError(self, obj.fs.repo_url, self_url)
checked_urls.update([obj.fs.repo_url, obj.fs.root_dir])
checked_urls.update([obj.fs.repo_url, obj.fs.repo.root_dir])
def get_obj(self, filter_info=None, **kwargs):
locked = kwargs.get("locked", True)
rev = self._get_rev(locked=locked)
if rev in self._staged_objs:
return self._staged_objs[rev]
if rev in self._objs:
return self._objs[rev]
_, obj = self._get_used_and_obj(
obj_only=True, filter_info=filter_info, **kwargs
)
+8 -5
View File
@@ -59,7 +59,7 @@ def is_lock_file(path):
def is_git_ignored(repo, path):
from dvc.fs.local import LocalFileSystem
from dvc.fs import LocalFileSystem
from dvc.scm import NoSCMError
try:
@@ -197,8 +197,8 @@ class SingleStageFile(FileMixin):
assert not isinstance(stage, PipelineStage)
if self.verify:
check_dvcfile_path(self.repo, self.path)
logger.debug(f"Saving information to '{relpath(self.path)}'.")
dump_yaml(self.path, serialize.to_single_stage_file(stage))
logger.debug("Saving information to '%s'.", relpath(self.path))
dump_yaml(self.path, serialize.to_single_stage_file(stage, **kwargs))
self.repo.scm_context.track_file(self.relpath)
def remove_stage(self, stage): # pylint: disable=unused-argument
@@ -243,9 +243,11 @@ class PipelineFile(FileMixin):
self._lockfile.dump(stage)
@staticmethod
def _check_if_parametrized(stage):
def _check_if_parametrized(stage, action: str = "dump") -> None:
if stage.raw_data.parametrized:
raise ParametrizedDumpError(f"cannot dump a parametrized {stage}")
raise ParametrizedDumpError(
f"cannot {action} a parametrized {stage}"
)
def _dump_pipeline_file(self, stage):
self._check_if_parametrized(stage)
@@ -291,6 +293,7 @@ class PipelineFile(FileMixin):
self._lockfile.remove()
def remove_stage(self, stage):
self._check_if_parametrized(stage, "remove")
self._lockfile.remove_stage(stage)
if not self.exists():
return
-8
View File
@@ -202,14 +202,6 @@ class FileMissingError(DvcException):
)
class DvcIgnoreInCollectedDirError(DvcException):
def __init__(self, ignore_dirname):
super().__init__(
".dvcignore file should not be in collected dir path: "
"'{}'".format(ignore_dirname)
)
class FileTransferError(DvcException):
_METHOD = "transfer"
+32 -17
View File
@@ -3,7 +3,7 @@ import os
import tempfile
import threading
from contextlib import contextmanager
from typing import Dict
from typing import TYPE_CHECKING, Dict
from funcy import retry, wrap_with
@@ -19,6 +19,9 @@ from dvc.repo import Repo
from dvc.scm import CloneError, map_scm_exception
from dvc.utils import relpath
if TYPE_CHECKING:
from scmrepo import Git
logger = logging.getLogger(__name__)
@@ -30,7 +33,7 @@ def external_repo(
from scmrepo.git import Git
from dvc.config import NoRemoteError
from dvc.fs.git import GitFileSystem
from dvc.fs import GitFileSystem
logger.debug("Creating external repo %s@%s", url, rev)
path = _cached_clone(url, rev, for_write=for_write)
@@ -47,19 +50,21 @@ def external_repo(
config.update(cache_config)
if for_write:
scm = None
root_dir = path
fs = None
else:
root_dir = os.path.realpath(path)
scm = Git(root_dir)
scm = Git(path)
fs = GitFileSystem(scm=scm, rev=rev)
root_dir = "/"
repo_kwargs = dict(
root_dir=root_dir,
url=url,
fs=fs,
config=config,
repo_factory=erepo_factory(url, cache_config),
repo_factory=erepo_factory(url, root_dir, cache_config),
scm=scm,
**kwargs,
)
@@ -89,14 +94,16 @@ def external_repo(
_remove(path)
def erepo_factory(url, cache_config, *args, **kwargs):
def make_repo(path, **_kwargs):
def erepo_factory(url, root_dir, cache_config):
from dvc.fs import localfs
def make_repo(path, fs=None, **_kwargs):
_config = cache_config.copy()
if os.path.isdir(url):
rel = os.path.relpath(path, _kwargs["fs"].fs_args["scm"].root_dir)
repo_path = os.path.join(url, rel)
fs = fs or localfs
repo_path = os.path.join(url, *fs.path.relparts(path, root_dir))
_config.update(_get_remote_config(repo_path))
return Repo(path, config=_config, **_kwargs)
return Repo(path, fs=fs, config=_config, **_kwargs)
return make_repo
@@ -138,7 +145,7 @@ def _get_remote_config(url):
name = "auto-generated-upstream"
return {
"core": {"remote": name},
"remote": {name: {"url": repo.odb.local.cache_dir}},
"remote": {name: {"url": repo.odb.local.path}},
}
# Use original remote to make sure that we are using correct url,
@@ -201,14 +208,12 @@ def _clone_default_branch(url, rev, for_write=False):
# given repo URL it is easier/safer for us to work with
# full clones in this case.
logger.debug("erepo: unshallowing clone for '%s'", url)
git.fetch(unshallow=True)
_merge_upstream(git)
_pull(git, unshallow=True)
shallow = False
CLONES[url] = (clone_path, shallow)
else:
logger.debug("erepo: git pull '%s'", url)
git.fetch()
_merge_upstream(git)
_pull(git)
else:
from dvc.scm import clone
@@ -227,7 +232,9 @@ def _clone_default_branch(url, rev, for_write=False):
"erepo: using shallow clone for branch '%s'", rev
)
except CloneError:
pass
git_dir = os.path.join(clone_path, ".git")
if os.path.exists(git_dir):
_remove(git_dir)
if not git:
git = clone(url, clone_path)
shallow = False
@@ -239,7 +246,15 @@ def _clone_default_branch(url, rev, for_write=False):
return clone_path, shallow
def _merge_upstream(git):
def _pull(git: "Git", unshallow: bool = False):
from dvc.repo.experiments.utils import fetch_all_exps
git.fetch(unshallow=unshallow)
_merge_upstream(git)
fetch_all_exps(git, "origin")
def _merge_upstream(git: "Git"):
from scmrepo.exceptions import SCMError
try:
+42 -44
View File
@@ -1,41 +1,47 @@
from urllib.parse import urlparse
from ..scheme import Schemes
from . import utils # noqa: F401
from .azure import AzureFileSystem
from .gdrive import GDriveFileSystem
from .gs import GSFileSystem
from .hdfs import HDFSFileSystem
from .http import HTTPFileSystem
from .https import HTTPSFileSystem
from .local import LocalFileSystem
from .oss import OSSFileSystem
from .s3 import S3FileSystem
from .ssh import SSHFileSystem
from .webdav import WebDAVFileSystem, WebDAVSFileSystem
from .webhdfs import WebHDFSFileSystem
from dvc_http import HTTPFileSystem, HTTPSFileSystem # noqa: F401
FS_MAP = {
Schemes.AZURE: AzureFileSystem,
Schemes.GDRIVE: GDriveFileSystem,
Schemes.GS: GSFileSystem,
Schemes.HDFS: HDFSFileSystem,
Schemes.WEBHDFS: WebHDFSFileSystem,
Schemes.HTTP: HTTPFileSystem,
Schemes.HTTPS: HTTPSFileSystem,
Schemes.S3: S3FileSystem,
Schemes.SSH: SSHFileSystem,
Schemes.OSS: OSSFileSystem,
Schemes.WEBDAV: WebDAVFileSystem,
Schemes.WEBDAVS: WebDAVSFileSystem,
# NOTE: LocalFileSystem is the default
}
# pylint: disable=unused-import
from dvc_objects.fs import utils # noqa: F401
from dvc_objects.fs import ( # noqa: F401
LocalFileSystem,
MemoryFileSystem,
Schemes,
generic,
get_fs_cls,
known_implementations,
localfs,
registry,
system,
)
from dvc_objects.fs.base import AnyFSPath, FileSystem # noqa: F401
from dvc_objects.fs.errors import ( # noqa: F401
AuthError,
ConfigError,
RemoteMissingDepsError,
)
from dvc_objects.fs.path import Path # noqa: F401
from .data import DataFileSystem # noqa: F401
from .dvc import DvcFileSystem # noqa: F401
from .git import GitFileSystem # noqa: F401
known_implementations.update(
{
"dvc": {
"class": "dvc.fs.dvc.DvcFileSystem",
"err": "dvc is supported, but requires 'dvc' to be installed",
},
"git": {
"class": "dvc.fs.git.GitFileSystem",
"err": "git is supported, but requires 'dvc' to be installed",
},
}
)
def get_fs_cls(remote_conf, scheme=None):
if not scheme:
scheme = urlparse(remote_conf["url"]).scheme
return FS_MAP.get(scheme, LocalFileSystem)
# pylint: enable=unused-import
def get_fs_config(repo, config, **kwargs):
@@ -86,7 +92,7 @@ def _resolve_remote_refs(repo, config, remote_conf):
def get_cloud_fs(repo, **kwargs):
from dvc.config import ConfigError
from dvc.config import ConfigError as RepoConfigError
from dvc.config_schema import SCHEMA, Invalid
repo_config = repo.config if repo else {}
@@ -96,12 +102,7 @@ def get_cloud_fs(repo, **kwargs):
try:
remote_conf = SCHEMA["remote"][str](remote_conf)
except Invalid as exc:
raise ConfigError(str(exc)) from None
if "jobs" not in remote_conf:
jobs = core_config.get("jobs")
if jobs:
remote_conf["jobs"] = jobs
raise RepoConfigError(str(exc)) from None
if "checksum_jobs" not in remote_conf:
checksum_jobs = core_config.get("checksum_jobs")
@@ -110,11 +111,8 @@ def get_cloud_fs(repo, **kwargs):
cls = get_fs_cls(remote_conf)
if cls == GDriveFileSystem and repo:
remote_conf["gdrive_credentials_tmp_dir"] = repo.tmp_dir
url = remote_conf.pop("url")
if issubclass(cls, WebDAVFileSystem):
if cls.protocol in ["webdav", "webdavs"]:
# For WebDAVFileSystem, provided url is the base path itself, so it
# should be treated as being a root path.
fs_path = cls.root_marker
-49
View File
@@ -1,49 +0,0 @@
import fsspec
from dvc.progress import Tqdm
class FsspecCallback(fsspec.Callback):
def __init__(self, progress_bar):
self.progress_bar = progress_bar
super().__init__()
def set_size(self, size):
if size is not None:
self.progress_bar.total = size
self.progress_bar.refresh()
super().set_size(size)
def relative_update(self, inc=1):
self.progress_bar.update(inc)
super().relative_update(inc)
def absolute_update(self, value):
self.progress_bar.update_to(value)
super().absolute_update(value)
@staticmethod
def wrap_fn(cb, fn):
def wrapped(*args, **kwargs):
res = fn(*args, **kwargs)
cb.relative_update()
return res
return wrapped
def tdqm_or_callback_wrapped(
fobj, method, total, callback=None, **pbar_kwargs
):
if callback:
from funcy import nullcontext
from tqdm.utils import CallbackIOWrapper
callback.set_size(total)
wrapper = CallbackIOWrapper(callback.relative_update, fobj, method)
return nullcontext(wrapper)
return Tqdm.wrapattr(fobj, method, total=total, bytes=True, **pbar_kwargs)
DEFAULT_CALLBACK = fsspec.callbacks.NoOpCallback()
-160
View File
@@ -1,160 +0,0 @@
import logging
import os
import threading
from fsspec.asyn import fsspec_loop
from fsspec.utils import infer_storage_options
from funcy import cached_property, memoize, wrap_prop
from dvc.exceptions import DvcException
from dvc.scheme import Schemes
from dvc.utils import format_link
from .fsspec_wrapper import CallbackMixin, ObjectFSWrapper
logger = logging.getLogger(__name__)
_DEFAULT_CREDS_STEPS = (
"https://azuresdkdocs.blob.core.windows.net/$web/python/"
"azure-identity/1.4.0/azure.identity.html#azure.identity"
".DefaultAzureCredential"
)
class AzureAuthError(DvcException):
pass
@memoize
def _az_config():
# NOTE: ideally we would've used get_default_cli().config from
# azure.cli.core, but azure-cli-core has a lot of conflicts with other
# dependencies. So instead we are just use knack directly
from knack.config import CLIConfig
config_dir = os.getenv(
"AZURE_CONFIG_DIR", os.path.expanduser(os.path.join("~", ".azure"))
)
return CLIConfig(config_dir=config_dir, config_env_var_prefix="AZURE")
# pylint:disable=abstract-method
class AzureFileSystem(CallbackMixin, ObjectFSWrapper):
scheme = Schemes.AZURE
PARAM_CHECKSUM = "etag"
REQUIRES = {
"adlfs": "adlfs",
"knack": "knack",
"azure-identity": "azure.identity",
}
@classmethod
def _strip_protocol(cls, path: str):
opts = infer_storage_options(path)
if opts.get("host"):
return "{host}{path}".format(**opts)
return _az_config().get("storage", "container_name", None)
def unstrip_protocol(self, path: str) -> str:
return "azure://" + path.lstrip("/")
@staticmethod
def _get_kwargs_from_urls(urlpath):
ops = infer_storage_options(urlpath)
if "host" in ops:
return {"bucket": ops["host"]}
return {}
def _prepare_credentials(self, **config):
from azure.identity.aio import DefaultAzureCredential
# Disable spam from failed cred types for DefaultAzureCredential
logging.getLogger("azure.identity.aio").setLevel(logging.ERROR)
login_info = {}
login_info["connection_string"] = config.get(
"connection_string",
_az_config().get("storage", "connection_string", None),
)
login_info["account_name"] = config.get(
"account_name", _az_config().get("storage", "account", None)
)
login_info["account_key"] = config.get(
"account_key", _az_config().get("storage", "key", None)
)
login_info["sas_token"] = config.get(
"sas_token", _az_config().get("storage", "sas_token", None)
)
login_info["tenant_id"] = config.get("tenant_id")
login_info["client_id"] = config.get("client_id")
login_info["client_secret"] = config.get("client_secret")
if not (login_info["account_name"] or login_info["connection_string"]):
raise AzureAuthError(
"Authentication to Azure Blob Storage requires either "
"account_name or connection_string.\nLearn more about "
"configuration settings at "
+ format_link("https://man.dvc.org/remote/modify")
)
any_secondary = any(
value for key, value in login_info.items() if key != "account_name"
)
if (
login_info["account_name"]
and not any_secondary
and not config.get("allow_anonymous_login", False)
):
with fsspec_loop():
login_info["credential"] = DefaultAzureCredential(
exclude_interactive_browser_credential=False,
exclude_environment_credential=config.get(
"exclude_environment_credential", False
),
exclude_visual_studio_code_credential=config.get(
"exclude_visual_studio_code_credential", False
),
exclude_shared_token_cache_credential=config.get(
"exclude_shared_token_cache_credential", False
),
exclude_managed_identity_credential=config.get(
"exclude_managed_identity_credential", False
),
)
for login_method, required_keys in [ # noqa
("connection string", ["connection_string"]),
(
"AD service principal",
["tenant_id", "client_id", "client_secret"],
),
("account key", ["account_name", "account_key"]),
("SAS token", ["account_name", "sas_token"]),
(
f"default credentials ({_DEFAULT_CREDS_STEPS})",
["account_name", "credential"],
),
("anonymous login", ["account_name"]),
]:
if all(login_info.get(key) is not None for key in required_keys):
break
else:
login_method = None
self.login_method = login_method
return login_info
@wrap_prop(threading.Lock())
@cached_property
def fs(self):
from adlfs import AzureBlobFileSystem
from azure.core.exceptions import AzureError
try:
return AzureBlobFileSystem(**self.fs_args)
except (ValueError, AzureError) as e:
raise AzureAuthError(
f"Authentication to Azure Blob Storage via {self.login_method}"
" failed.\nLearn more about configuration settings at"
f" {format_link('https://man.dvc.org/remote/modify')}"
) from e
-362
View File
@@ -1,362 +0,0 @@
import contextlib
import logging
import os
from concurrent.futures import ThreadPoolExecutor, as_completed
from functools import partialmethod
from multiprocessing import cpu_count
from typing import ClassVar, Dict, Optional
from funcy import cached_property
from tqdm.utils import CallbackIOWrapper
from dvc.exceptions import DvcException
from dvc.fs._callback import DEFAULT_CALLBACK, FsspecCallback
from dvc.ui import ui
from dvc.utils import tmp_fname
from dvc.utils.fs import makedirs, move
logger = logging.getLogger(__name__)
class RemoteActionNotImplemented(DvcException):
def __init__(self, action, scheme):
m = f"{action} is not supported for {scheme} remotes"
super().__init__(m)
class RemoteMissingDepsError(DvcException):
pass
class FileSystem:
sep = "/"
scheme = "base"
REQUIRES: ClassVar[Dict[str, str]] = {}
_JOBS = 4 * cpu_count()
HASH_JOBS = max(1, min(4, cpu_count() // 2))
LIST_OBJECT_PAGE_SIZE = 1000
TRAVERSE_WEIGHT_MULTIPLIER = 5
TRAVERSE_PREFIX_LEN = 3
TRAVERSE_THRESHOLD_SIZE = 500000
CAN_TRAVERSE = True
# Needed for some providers, and http open()
CHUNK_SIZE = 64 * 1024 * 1024 # 64 MiB
PARAM_CHECKSUM: ClassVar[Optional[str]] = None
def __init__(self, **kwargs):
self._check_requires(**kwargs)
self.jobs = kwargs.get("jobs") or self._JOBS
self.hash_jobs = kwargs.get("checksum_jobs") or self.HASH_JOBS
self._config = kwargs
@property
def config(self):
return self._config
@cached_property
def path(self):
from .path import Path
return Path(self.sep)
@classmethod
def _strip_protocol(cls, path: str):
return path
def unstrip_protocol(self, path):
return path
@staticmethod
def _get_kwargs_from_urls(urlpath): # pylint:disable=unused-argument
return {}
@classmethod
def get_missing_deps(cls):
import importlib
missing = []
for package, module in cls.REQUIRES.items():
try:
importlib.import_module(module)
except ImportError:
missing.append(package)
return missing
def _check_requires(self, **kwargs):
from ..scheme import Schemes
from ..utils import format_link
from ..utils.pkg import PKG
missing = self.get_missing_deps()
if not missing:
return
url = kwargs.get("url", f"{self.scheme}://")
scheme = self.scheme
if scheme == Schemes.WEBDAVS:
scheme = Schemes.WEBDAV
by_pkg = {
"pip": f"pip install 'dvc[{scheme}]'",
"conda": f"conda install -c conda-forge dvc-{scheme}",
}
cmd = by_pkg.get(PKG)
if cmd:
link = format_link("https://dvc.org/doc/install")
hint = (
f"To install dvc with those dependencies, run:\n"
"\n"
f"\t{cmd}\n"
"\n"
f"See {link} for more info."
)
else:
link = format_link("https://github.com/iterative/dvc/issues")
hint = f"Please report this bug to {link}. Thank you!"
raise RemoteMissingDepsError(
f"URL '{url}' is supported but requires these missing "
f"dependencies: {missing}. {hint}"
)
def checksum(self, path) -> str:
raise NotImplementedError
def open(self, path, mode: str = "r", encoding: str = None, **kwargs):
raise RemoteActionNotImplemented("open", self.scheme)
def exists(self, path) -> bool:
raise NotImplementedError
# pylint: disable=unused-argument
def isdir(self, path):
"""Optional: Overwrite only if the remote has a way to distinguish
between a directory and a file.
"""
return False
def isfile(self, path):
"""Optional: Overwrite only if the remote has a way to distinguish
between a directory and a file.
"""
return True
def iscopy(self, path):
"""Check if this file is an independent copy."""
return False # We can't be sure by default
def walk(self, top, topdown=True, **kwargs):
"""Return a generator with (root, dirs, files)."""
raise NotImplementedError
def find(self, path, prefix=None):
"""Return a generator with `str`s to all the files.
Optional kwargs:
prefix (bool): If true `path` will be treated as a prefix
rather than directory path.
"""
raise NotImplementedError
def is_empty(self, path):
return False
def info(self, path):
raise NotImplementedError
def getsize(self, path):
return self.info(path).get("size")
def remove(self, path):
raise RemoteActionNotImplemented("remove", self.scheme)
def makedirs(self, path, **kwargs):
"""Optional: Implement only if the remote needs to create
directories before copying/linking/moving data
"""
def move(self, from_info, to_info):
self.copy(from_info, to_info)
self.remove(from_info)
def copy(self, from_info, to_info):
raise RemoteActionNotImplemented("copy", self.scheme)
def symlink(self, from_info, to_info):
raise RemoteActionNotImplemented("symlink", self.scheme)
def hardlink(self, from_info, to_info):
raise RemoteActionNotImplemented("hardlink", self.scheme)
def reflink(self, from_info, to_info):
raise RemoteActionNotImplemented("reflink", self.scheme)
# pylint: enable=unused-argument
def upload(
self,
from_info,
to_info,
total=None,
desc=None,
callback=None,
no_progress_bar=False,
**pbar_args,
):
is_file_obj = hasattr(from_info, "read")
method = "upload_fobj" if is_file_obj else "put_file"
if not hasattr(self, method):
raise RemoteActionNotImplemented(method, self.scheme)
if not is_file_obj:
from .local import localfs
desc = desc or localfs.path.name(from_info)
stack = contextlib.ExitStack()
if not callback:
pbar = ui.progress(
desc=desc,
disable=no_progress_bar,
bytes=True,
total=total or -1,
**pbar_args,
)
stack.enter_context(pbar)
callback = pbar.as_callback()
if total:
callback.set_size(total)
with stack:
if is_file_obj:
wrapped = CallbackIOWrapper(
callback.relative_update, from_info
)
# `size` is used to provide hints to the WebdavFileSystem
# for legacy servers.
# pylint: disable=no-member
return self.upload_fobj(wrapped, to_info, size=total)
logger.debug("Uploading '%s' to '%s'", from_info, to_info)
# pylint: disable=no-member
return self.put_file(
os.fspath(from_info), to_info, callback=callback
)
def download(
self,
from_info,
to_info,
name=None,
callback=None,
no_progress_bar=False,
jobs=None,
_only_file=False,
**kwargs,
):
from .local import localfs
if not hasattr(self, "get_file"):
raise RemoteActionNotImplemented("get_file", self.scheme)
download_dir = not _only_file and self.isdir(from_info)
desc = name or localfs.path.name(to_info)
stack = contextlib.ExitStack()
if not callback:
pbar_kwargs = {"unit": "Files"} if download_dir else {}
pbar = ui.progress(
total=-1,
desc="Downloading directory" if download_dir else desc,
bytes=not download_dir,
disable=no_progress_bar,
**pbar_kwargs,
)
stack.enter_context(pbar)
callback = pbar.as_callback()
with stack:
if download_dir:
return self._download_dir(
from_info, to_info, callback=callback, jobs=jobs, **kwargs
)
return self._download_file(from_info, to_info, callback=callback)
download_file = partialmethod(download, _only_file=True)
def _download_dir(
self,
from_info,
to_info,
callback=DEFAULT_CALLBACK,
jobs=None,
**kwargs,
):
from .local import localfs
from_infos = list(self.find(from_info, **kwargs))
if not from_infos:
makedirs(to_info, exist_ok=True)
return None
to_infos = (
localfs.path.join(to_info, *self.path.relparts(info, from_info))
for info in from_infos
)
callback.set_size(len(from_infos))
download_files = FsspecCallback.wrap_fn(callback, self._download_file)
max_workers = jobs or self.jobs
with ThreadPoolExecutor(max_workers=max_workers) as executor:
futures = [
executor.submit(download_files, from_info, to_info)
for from_info, to_info in zip(from_infos, to_infos)
]
# NOTE: unlike pulling/fetching cache, where we need to
# download everything we can, not raising an error here might
# turn very ugly, as the user might think that he has
# downloaded a complete directory, while having a partial one,
# which might cause unexpected results in his pipeline.
for future in as_completed(futures):
# NOTE: executor won't let us raise until all futures that
# it has are finished, so we need to cancel them ourselves
# before re-raising.
exc = future.exception()
if exc:
for entry in futures:
entry.cancel()
raise exc
def _download_file(
self,
from_info,
to_info,
callback=DEFAULT_CALLBACK,
):
from .local import localfs
makedirs(localfs.path.parent(to_info), exist_ok=True)
tmp_file = tmp_fname(to_info)
logger.debug("Downloading '%s' to '%s'", from_info, to_info)
try:
# noqa, pylint: disable=no-member
self.get_file(from_info, tmp_file, callback=callback)
except Exception: # pylint: disable=broad-except
# do we need to rollback makedirs for previously not-existing
# directories?
with contextlib.suppress(FileNotFoundError):
os.unlink(tmp_file)
raise
move(tmp_file, to_info)
+79
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@@ -0,0 +1,79 @@
# pylint: disable=unused-import
from contextlib import ExitStack
from typing import TYPE_CHECKING, Optional
from funcy import cached_property
from dvc_objects.fs.callbacks import ( # noqa: F401
DEFAULT_CALLBACK,
Callback,
TqdmCallback,
)
if TYPE_CHECKING:
from dvc.ui._rich_progress import RichTransferProgress
class RichCallback(Callback):
def __init__(
self,
size: Optional[int] = None,
value: int = 0,
progress: "RichTransferProgress" = None,
desc: str = None,
bytes: bool = False, # pylint: disable=redefined-builtin
unit: str = None,
disable: bool = False,
) -> None:
self._progress = progress
self.disable = disable
self._task_kwargs = {
"description": desc or "",
"bytes": bytes,
"unit": unit,
"total": size or 0,
"visible": False,
"progress_type": None if bytes else "summary",
}
self._stack = ExitStack()
super().__init__(size=size, value=value)
@cached_property
def progress(self):
from dvc.ui import ui
from dvc.ui._rich_progress import RichTransferProgress
if self._progress is not None:
return self._progress
progress = RichTransferProgress(
transient=True,
disable=self.disable,
console=ui.error_console,
)
return self._stack.enter_context(progress)
@cached_property
def task(self):
return self.progress.add_task(**self._task_kwargs)
def __enter__(self):
return self
def close(self):
self.progress.clear_task(self.task)
self._stack.close()
def call(self, hook_name=None, **kwargs):
self.progress.update(
self.task,
completed=self.value,
total=self.size,
visible=not self.disable,
)
def branch(self, path_1, path_2, kwargs, child: Optional[Callback] = None):
child = child or RichCallback(
progress=self.progress, desc=path_1, bytes=True
)
return super().branch(path_1, path_2, kwargs, child=child)
+34
View File
@@ -0,0 +1,34 @@
import logging
import os
import threading
from funcy import cached_property, wrap_prop
from dvc.utils import as_posix
from dvc_data.fs import DataFileSystem as _DataFileSystem
from dvc_objects.fs.base import FileSystem
logger = logging.getLogger(__name__)
class DataFileSystem(FileSystem):
protocol = "local"
PARAM_CHECKSUM = "md5"
def _prepare_credentials(self, **config):
return config
@wrap_prop(threading.Lock())
@cached_property
def fs(self):
return _DataFileSystem(**self.fs_args)
def isdvc(self, path, **kwargs):
return self.fs.isdvc(path, **kwargs)
def from_os_path(self, path):
if os.path.isabs(path):
path = os.path.splitdrive(path)[1]
return as_posix(path)

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