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https://github.com/Stone-Red-Code/dvc.git
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7806afd4ad |
@@ -1,19 +1,20 @@
|
||||
[flake8]
|
||||
ignore=
|
||||
max_line_length = 88
|
||||
extend-ignore=
|
||||
# Whitespace before ':'
|
||||
E203
|
||||
# Too many leading '#' for block comment
|
||||
E266
|
||||
# Line break occurred before a binary operator
|
||||
W503
|
||||
# unindexed parameters in the str.format, see:
|
||||
# https://pypi.org/project/flake8-string-format/
|
||||
P1
|
||||
# use `!r` instead of surrounding by quotes
|
||||
B028
|
||||
max_line_length = 88
|
||||
max-complexity = 10
|
||||
select = B,C,E,F,W,T4,B902,T,P,TYP
|
||||
show_source = true
|
||||
count = true
|
||||
min_python_version = 3.8.0
|
||||
per-file-ignores =
|
||||
dvc/testing/benchmarks/conftest.py:F401
|
||||
dvc/testing/conftest.py:F401
|
||||
dvc/testing/plugin.py:F401
|
||||
tests/conftest.py:F401
|
||||
tests/func/experiments/executor/test_ssh.py:F401
|
||||
|
||||
@@ -15,7 +15,7 @@ jobs:
|
||||
pip:
|
||||
runs-on: ubuntu-latest
|
||||
steps:
|
||||
- uses: actions/checkout@v3
|
||||
- uses: actions/checkout@v4
|
||||
with:
|
||||
fetch-depth: 0
|
||||
|
||||
|
||||
@@ -28,7 +28,7 @@ jobs:
|
||||
|
||||
steps:
|
||||
- name: Checkout repository
|
||||
uses: actions/checkout@v3
|
||||
uses: actions/checkout@v4
|
||||
|
||||
- name: Initialize CodeQL
|
||||
uses: github/codeql-action/init@v2
|
||||
|
||||
@@ -23,11 +23,11 @@ jobs:
|
||||
plugin: ["dvc-s3"]
|
||||
|
||||
steps:
|
||||
- uses: actions/checkout@v3
|
||||
- uses: actions/checkout@v4
|
||||
with:
|
||||
path: dvc
|
||||
|
||||
- uses: actions/checkout@v3
|
||||
- uses: actions/checkout@v4
|
||||
with:
|
||||
repository: iterative/${{ matrix.plugin }}
|
||||
ref: main
|
||||
|
||||
@@ -26,7 +26,7 @@ jobs:
|
||||
pyv: ["3.8", "3.9", "3.10", "3.11"]
|
||||
|
||||
steps:
|
||||
- uses: actions/checkout@v3
|
||||
- uses: actions/checkout@v4
|
||||
with:
|
||||
fetch-depth: 0
|
||||
- name: Set up Python
|
||||
@@ -66,7 +66,7 @@ jobs:
|
||||
runs-on: ubuntu-latest
|
||||
steps:
|
||||
- name: Slack Notification
|
||||
uses: rtCamp/[email protected].0
|
||||
uses: rtCamp/[email protected].1
|
||||
env:
|
||||
SLACK_WEBHOOK: ${{ secrets.SLACK_WEBHOOK }}
|
||||
SLACK_COLOR: ${{ job.status }}
|
||||
|
||||
+3
-16
@@ -23,17 +23,6 @@ repos:
|
||||
- id: mixed-line-ending
|
||||
- id: sort-simple-yaml
|
||||
- id: trailing-whitespace
|
||||
- repo: https://github.com/lovesegfault/beautysh
|
||||
rev: v6.2.1
|
||||
hooks:
|
||||
- id: beautysh
|
||||
args: ["-i", "2"]
|
||||
- repo: https://github.com/asottile/pyupgrade
|
||||
rev: v3.9.0
|
||||
hooks:
|
||||
- id: pyupgrade
|
||||
args:
|
||||
- --py38-plus
|
||||
- repo: https://github.com/psf/black
|
||||
rev: 23.7.0
|
||||
hooks:
|
||||
@@ -43,22 +32,20 @@ repos:
|
||||
hooks:
|
||||
- id: isort
|
||||
- repo: https://github.com/astral-sh/ruff-pre-commit
|
||||
rev: 'v0.0.278'
|
||||
rev: 'v0.0.287'
|
||||
hooks:
|
||||
- id: ruff
|
||||
args: [--fix, --exit-non-zero-on-fix]
|
||||
- repo: https://github.com/codespell-project/codespell
|
||||
rev: v2.2.5
|
||||
hooks:
|
||||
- id: codespell
|
||||
additional_dependencies: ["tomli"]
|
||||
- repo: https://github.com/PyCQA/flake8
|
||||
rev: 6.0.0
|
||||
rev: 6.1.0
|
||||
hooks:
|
||||
- id: flake8
|
||||
additional_dependencies:
|
||||
- flake8-bugbear
|
||||
- flake8-comprehensions
|
||||
- flake8-debugger
|
||||
- flake8-string-format
|
||||
- flake8-typing-imports
|
||||
- repo: https://github.com/PyCQA/bandit
|
||||
|
||||
@@ -22,6 +22,7 @@ hiddenimports = [
|
||||
"dvc_hdfs",
|
||||
"dvc_oss",
|
||||
"dvc_s3",
|
||||
"dvc_ssh",
|
||||
"dvc_webdav",
|
||||
"dvc_webhdfs",
|
||||
# https://github.com/pypa/setuptools/issues/1963
|
||||
|
||||
+29
-10
@@ -67,7 +67,7 @@ class _OpenContextManager(GCM):
|
||||
raise AttributeError("dvc.api.open() should be used in a with statement.")
|
||||
|
||||
|
||||
def open( # noqa, pylint: disable=redefined-builtin
|
||||
def open( # noqa: A001, pylint: disable=redefined-builtin
|
||||
path: str,
|
||||
repo: Optional[str] = None,
|
||||
rev: Optional[str] = None,
|
||||
@@ -75,6 +75,7 @@ def open( # noqa, pylint: disable=redefined-builtin
|
||||
mode: str = "r",
|
||||
encoding: Optional[str] = None,
|
||||
config: Optional[Dict[str, Any]] = None,
|
||||
remote_config: Optional[Dict[str, Any]] = None,
|
||||
):
|
||||
"""
|
||||
Opens a file tracked in a DVC project.
|
||||
@@ -118,6 +119,9 @@ def open( # noqa, pylint: disable=redefined-builtin
|
||||
Mirrors the namesake parameter in builtin `open()`_.
|
||||
config(dict, optional): config to be passed to the DVC repository.
|
||||
Defaults to None.
|
||||
remote_config(dict, optional): remote config to be passed to the DVC
|
||||
repository.
|
||||
Defaults to None.
|
||||
|
||||
Returns:
|
||||
_OpenContextManager: A context manager that generatse a corresponding
|
||||
@@ -214,22 +218,27 @@ def open( # noqa, pylint: disable=redefined-builtin
|
||||
"mode": mode,
|
||||
"encoding": encoding,
|
||||
"config": config,
|
||||
"remote_config": remote_config,
|
||||
}
|
||||
return _OpenContextManager(_open, args, kwargs)
|
||||
|
||||
|
||||
def _open(path, repo=None, rev=None, remote=None, mode="r", encoding=None, config=None):
|
||||
if remote:
|
||||
if config is not None:
|
||||
raise ValueError(
|
||||
"can't specify both `remote` and `config` at the same time"
|
||||
)
|
||||
config = {"core": {"remote": remote}}
|
||||
|
||||
def _open(
|
||||
path,
|
||||
repo=None,
|
||||
rev=None,
|
||||
remote=None,
|
||||
mode="r",
|
||||
encoding=None,
|
||||
config=None,
|
||||
remote_config=None,
|
||||
):
|
||||
repo_kwargs: Dict[str, Any] = {
|
||||
"subrepos": True,
|
||||
"uninitialized": True,
|
||||
"remote": remote,
|
||||
"config": config,
|
||||
"remote_config": remote_config,
|
||||
}
|
||||
|
||||
with Repo.open(repo, rev=rev, **repo_kwargs) as _repo:
|
||||
@@ -265,7 +274,16 @@ def _open(path, repo=None, rev=None, remote=None, mode="r", encoding=None, confi
|
||||
raise DvcIsADirectoryError(f"'{path}' is a directory") from exc
|
||||
|
||||
|
||||
def read(path, repo=None, rev=None, remote=None, mode="r", encoding=None, config=None):
|
||||
def read(
|
||||
path,
|
||||
repo=None,
|
||||
rev=None,
|
||||
remote=None,
|
||||
mode="r",
|
||||
encoding=None,
|
||||
config=None,
|
||||
remote_config=None,
|
||||
):
|
||||
"""
|
||||
Returns the contents of a tracked file (by DVC or Git). For Git repos, HEAD
|
||||
is used unless a rev argument is supplied. The default remote is tried
|
||||
@@ -279,5 +297,6 @@ def read(path, repo=None, rev=None, remote=None, mode="r", encoding=None, config
|
||||
mode=mode,
|
||||
encoding=encoding,
|
||||
config=config,
|
||||
remote_config=remote_config,
|
||||
) as fd:
|
||||
return fd.read()
|
||||
|
||||
+9
-5
@@ -24,7 +24,7 @@ def _get_odb(
|
||||
if not settings:
|
||||
return None
|
||||
|
||||
cls, config, fs_path = get_cloud_fs(repo, **settings)
|
||||
cls, config, fs_path = get_cloud_fs(repo.config, **settings)
|
||||
fs = fs or cls(**config)
|
||||
if prefix:
|
||||
fs_path = fs.path.join(fs_path, *prefix)
|
||||
@@ -42,11 +42,8 @@ class CacheManager:
|
||||
self.config = config = repo.config["cache"]
|
||||
self._odb = {}
|
||||
|
||||
default = None
|
||||
if repo and repo.local_dvc_dir:
|
||||
default = os.path.join(repo.local_dvc_dir, self.CACHE_DIR)
|
||||
|
||||
local = config.get("local")
|
||||
default = self.default_local_cache_dir
|
||||
|
||||
if local:
|
||||
settings = {"name": local}
|
||||
@@ -103,6 +100,13 @@ class CacheManager:
|
||||
"""
|
||||
return self.legacy.path
|
||||
|
||||
@property
|
||||
def default_local_cache_dir(self) -> Optional[str]:
|
||||
repo = self._repo
|
||||
if repo and repo.local_dvc_dir:
|
||||
return os.path.join(repo.local_dvc_dir, self.CACHE_DIR)
|
||||
return None
|
||||
|
||||
|
||||
def migrate_2_to_3(repo: "Repo", dry: bool = False):
|
||||
"""Migrate legacy 2.x objects to 3.x cache.
|
||||
|
||||
+1
-1
@@ -230,7 +230,7 @@ def main(argv=None): # noqa: C901, PLR0912, PLR0915
|
||||
logger.exception("")
|
||||
except DvcParserError:
|
||||
ret = 254
|
||||
except Exception as exc: # noqa, pylint: disable=broad-except
|
||||
except Exception as exc: # noqa: BLE001, pylint: disable=broad-except
|
||||
# pylint: disable=no-member
|
||||
ret = _log_exceptions(exc) or 255
|
||||
|
||||
|
||||
@@ -31,7 +31,6 @@ from dvc.commands import (
|
||||
install,
|
||||
ls,
|
||||
ls_url,
|
||||
machine,
|
||||
metrics,
|
||||
move,
|
||||
params,
|
||||
@@ -89,7 +88,6 @@ COMMANDS = [
|
||||
stage,
|
||||
experiments,
|
||||
check_ignore,
|
||||
machine,
|
||||
data,
|
||||
]
|
||||
|
||||
|
||||
@@ -1,3 +1,27 @@
|
||||
import argparse
|
||||
|
||||
|
||||
class DictAction(argparse.Action):
|
||||
def __call__(self, parser, args, values, option_string=None): # noqa: ARG002
|
||||
d = getattr(args, self.dest) or {}
|
||||
|
||||
if isinstance(values, list):
|
||||
kvs = values
|
||||
else:
|
||||
kvs = [values]
|
||||
|
||||
for kv in kvs:
|
||||
key, value = kv.split("=", 1)
|
||||
if not value:
|
||||
raise argparse.ArgumentError(
|
||||
self,
|
||||
f'Could not parse argument "{values}" as k1=v1 k2=v2 ... format',
|
||||
)
|
||||
d[key] = value
|
||||
|
||||
setattr(args, self.dest, d)
|
||||
|
||||
|
||||
def fix_subparsers(subparsers):
|
||||
"""Workaround for bug in Python 3. See more info at:
|
||||
https://bugs.python.org/issue16308
|
||||
|
||||
@@ -37,6 +37,7 @@ class CmdCheckout(CmdBase):
|
||||
force=self.args.force,
|
||||
relink=self.args.relink,
|
||||
recursive=self.args.recursive,
|
||||
allow_missing=self.args.allow_missing,
|
||||
)
|
||||
except CheckoutError as _exc:
|
||||
exc = _exc
|
||||
@@ -101,6 +102,12 @@ def add_parser(subparsers, parent_parser):
|
||||
default=False,
|
||||
help="Recreate links or copies from cache to workspace.",
|
||||
)
|
||||
checkout_parser.add_argument(
|
||||
"--allow-missing",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Ignore errors if some of the files or directories are missing.",
|
||||
)
|
||||
checkout_parser.add_argument(
|
||||
"targets",
|
||||
nargs="*",
|
||||
|
||||
@@ -47,7 +47,10 @@ def add_parser(subparsers, parent_parser):
|
||||
"--force",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Commit even if hash value for dependencies/outputs changed.",
|
||||
help=(
|
||||
"Commit data even if hash values for dependencies or "
|
||||
"outputs did not change."
|
||||
),
|
||||
)
|
||||
commit_parser.add_argument(
|
||||
"-d",
|
||||
|
||||
@@ -9,6 +9,9 @@ from dvc.ui import ui
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
SUPPORTED_SHELLS = ["bash", "zsh"]
|
||||
|
||||
|
||||
class CmdCompletion(CmdBaseNoRepo):
|
||||
def run(self):
|
||||
import shtab
|
||||
@@ -35,6 +38,6 @@ def add_parser(subparsers, parent_parser):
|
||||
"--shell",
|
||||
help="Shell syntax for completions.",
|
||||
default="bash",
|
||||
choices=["bash", "zsh"],
|
||||
choices=SUPPORTED_SHELLS,
|
||||
)
|
||||
completion_parser.set_defaults(func=CmdCompletion)
|
||||
|
||||
@@ -23,15 +23,22 @@ class CmdExperimentsList(CmdBase):
|
||||
git_remote=git_remote,
|
||||
)
|
||||
|
||||
from dvc.repo.experiments.utils import describe
|
||||
from dvc.scm import Git
|
||||
|
||||
if name_only or sha_only:
|
||||
names = {}
|
||||
else:
|
||||
assert isinstance(self.repo.scm, Git)
|
||||
names = describe(
|
||||
self.repo.scm,
|
||||
(baseline for baseline in exps),
|
||||
logger=logger,
|
||||
)
|
||||
|
||||
for baseline in exps:
|
||||
if not (name_only or sha_only):
|
||||
tag_base = "refs/tags/"
|
||||
branch_base = "refs/heads/"
|
||||
name = baseline[:7]
|
||||
if baseline.startswith(tag_base):
|
||||
name = baseline[len(tag_base) :]
|
||||
elif baseline.startswith(branch_base):
|
||||
name = baseline[len(branch_base) :]
|
||||
name = names.get(baseline) or baseline[:7]
|
||||
ui.write(f"{name}:")
|
||||
for exp_name, rev in exps[baseline]:
|
||||
if name_only:
|
||||
@@ -52,6 +59,7 @@ def add_parser(experiments_subparsers, parent_parser):
|
||||
EXPERIMENTS_LIST_HELP = "List local and remote experiments."
|
||||
experiments_list_parser = experiments_subparsers.add_parser(
|
||||
"list",
|
||||
aliases=["ls"],
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(EXPERIMENTS_LIST_HELP, "exp/list"),
|
||||
help=EXPERIMENTS_LIST_HELP,
|
||||
|
||||
@@ -50,6 +50,7 @@ def add_parser(experiments_subparsers, parent_parser):
|
||||
EXPERIMENTS_REMOVE_HELP = "Remove experiments."
|
||||
experiments_remove_parser = experiments_subparsers.add_parser(
|
||||
"remove",
|
||||
aliases=["rm"],
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(EXPERIMENTS_REMOVE_HELP, "exp/remove"),
|
||||
help=EXPERIMENTS_REMOVE_HELP,
|
||||
|
||||
@@ -17,7 +17,6 @@ class CmdExperimentsRun(CmdRepro):
|
||||
jobs=self.args.jobs,
|
||||
params=self.args.set_param,
|
||||
tmp_dir=self.args.tmp_dir,
|
||||
machine=self.args.machine,
|
||||
copy_paths=self.args.copy_paths,
|
||||
message=self.args.message,
|
||||
**self._common_kwargs,
|
||||
@@ -90,15 +89,6 @@ def _add_run_common(parser):
|
||||
"your workspace."
|
||||
),
|
||||
)
|
||||
parser.add_argument(
|
||||
"--machine",
|
||||
default=None,
|
||||
help=argparse.SUPPRESS,
|
||||
# help=(
|
||||
# "Run this experiment on the specified 'dvc machine' instance."
|
||||
# )
|
||||
# metavar="<name>",
|
||||
)
|
||||
parser.add_argument(
|
||||
"-C",
|
||||
"--copy-paths",
|
||||
|
||||
@@ -27,10 +27,6 @@ class CmdExperimentsSave(CmdBase):
|
||||
else:
|
||||
name = self.repo.experiments.get_exact_name([ref])[ref]
|
||||
ui.write(f"Experiment has been saved as: {name}")
|
||||
ui.write(
|
||||
"\nTo promote an experiment to a Git branch run:\n\n"
|
||||
"\tdvc exp branch <exp> <branch>\n"
|
||||
)
|
||||
|
||||
return 0
|
||||
|
||||
|
||||
+18
-1
@@ -3,7 +3,7 @@ import logging
|
||||
|
||||
from dvc.cli import completion
|
||||
from dvc.cli.command import CmdBaseNoRepo
|
||||
from dvc.cli.utils import append_doc_link
|
||||
from dvc.cli.utils import DictAction, append_doc_link
|
||||
from dvc.exceptions import DvcException
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
@@ -38,6 +38,8 @@ class CmdGet(CmdBaseNoRepo):
|
||||
jobs=self.args.jobs,
|
||||
force=self.args.force,
|
||||
config=self.args.config,
|
||||
remote=self.args.remote,
|
||||
remote_config=self.args.remote_config,
|
||||
)
|
||||
return 0
|
||||
except CloneError:
|
||||
@@ -111,4 +113,19 @@ def add_parser(subparsers, parent_parser):
|
||||
"in the target repository."
|
||||
),
|
||||
)
|
||||
get_parser.add_argument(
|
||||
"--remote",
|
||||
type=str,
|
||||
help="Remote name to set as a default in the target repository.",
|
||||
)
|
||||
get_parser.add_argument(
|
||||
"--remote-config",
|
||||
type=str,
|
||||
nargs="*",
|
||||
action=DictAction,
|
||||
help=(
|
||||
"Remote config options to merge with a remote's config (default or one "
|
||||
"specified by '--remote') in the target repository."
|
||||
),
|
||||
)
|
||||
get_parser.set_defaults(func=CmdGet)
|
||||
|
||||
@@ -3,7 +3,7 @@ import logging
|
||||
|
||||
from dvc.cli import completion
|
||||
from dvc.cli.command import CmdBaseNoRepo
|
||||
from dvc.cli.utils import append_doc_link
|
||||
from dvc.cli.utils import DictAction, append_doc_link
|
||||
from dvc.exceptions import DvcException
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
@@ -19,6 +19,7 @@ class CmdGetUrl(CmdBaseNoRepo):
|
||||
out=self.args.out,
|
||||
jobs=self.args.jobs,
|
||||
force=self.args.force,
|
||||
fs_config=self.args.fs_config,
|
||||
)
|
||||
return 0
|
||||
except DvcException:
|
||||
@@ -58,4 +59,11 @@ def add_parser(subparsers, parent_parser):
|
||||
default=False,
|
||||
help="Override local file or folder if exists.",
|
||||
)
|
||||
get_parser.add_argument(
|
||||
"--fs-config",
|
||||
type=str,
|
||||
nargs="*",
|
||||
action=DictAction,
|
||||
help="Config options for the target url.",
|
||||
)
|
||||
get_parser.set_defaults(func=CmdGetUrl)
|
||||
|
||||
+18
-1
@@ -3,7 +3,7 @@ import logging
|
||||
|
||||
from dvc.cli import completion
|
||||
from dvc.cli.command import CmdBase
|
||||
from dvc.cli.utils import append_doc_link
|
||||
from dvc.cli.utils import DictAction, append_doc_link
|
||||
from dvc.exceptions import DvcException
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
@@ -23,6 +23,8 @@ class CmdImport(CmdBase):
|
||||
no_download=self.args.no_download,
|
||||
jobs=self.args.jobs,
|
||||
config=self.args.config,
|
||||
remote=self.args.remote,
|
||||
remote_config=self.args.remote_config,
|
||||
)
|
||||
except CloneError:
|
||||
logger.exception("failed to import '%s'", self.args.path)
|
||||
@@ -103,4 +105,19 @@ def add_parser(subparsers, parent_parser):
|
||||
"in the target repository."
|
||||
),
|
||||
)
|
||||
import_parser.add_argument(
|
||||
"--remote",
|
||||
type=str,
|
||||
help="Remote name to set as a default in the target repository.",
|
||||
)
|
||||
import_parser.add_argument(
|
||||
"--remote-config",
|
||||
type=str,
|
||||
nargs="*",
|
||||
action=DictAction,
|
||||
help=(
|
||||
"Remote config options to merge with a remote's config (default or one "
|
||||
"specified by '--remote') in the target repository."
|
||||
),
|
||||
)
|
||||
import_parser.set_defaults(func=CmdImport)
|
||||
|
||||
@@ -3,7 +3,7 @@ import logging
|
||||
|
||||
from dvc.cli import completion
|
||||
from dvc.cli.command import CmdBase
|
||||
from dvc.cli.utils import append_doc_link
|
||||
from dvc.cli.utils import DictAction, append_doc_link
|
||||
from dvc.exceptions import DvcException
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
@@ -22,6 +22,7 @@ class CmdImportUrl(CmdBase):
|
||||
jobs=self.args.jobs,
|
||||
force=self.args.force,
|
||||
version_aware=self.args.version_aware,
|
||||
fs_config=self.args.fs_config,
|
||||
)
|
||||
except DvcException:
|
||||
logger.exception(
|
||||
@@ -114,4 +115,11 @@ def add_parser(subparsers, parent_parser):
|
||||
default=False,
|
||||
help="Import using cloud versioning. Implied if the URL contains a version ID.",
|
||||
)
|
||||
import_parser.add_argument(
|
||||
"--fs-config",
|
||||
type=str,
|
||||
nargs="*",
|
||||
action=DictAction,
|
||||
help="Config options for the target url.",
|
||||
)
|
||||
import_parser.set_defaults(func=CmdImportUrl)
|
||||
|
||||
@@ -3,7 +3,7 @@ import logging
|
||||
|
||||
from dvc.cli import completion
|
||||
from dvc.cli.command import CmdBaseNoRepo
|
||||
from dvc.cli.utils import append_doc_link
|
||||
from dvc.cli.utils import DictAction, append_doc_link
|
||||
from dvc.commands.ls.ls_colors import LsColors
|
||||
from dvc.exceptions import DvcException
|
||||
from dvc.ui import ui
|
||||
@@ -11,7 +11,18 @@ from dvc.ui import ui
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
def _prettify(entries, with_color=False):
|
||||
def _format_entry(entry, fmt):
|
||||
from dvc.utils.humanize import naturalsize
|
||||
|
||||
size = entry.get("size")
|
||||
if size is None:
|
||||
size = ""
|
||||
else:
|
||||
size = naturalsize(size)
|
||||
return size, fmt(entry)
|
||||
|
||||
|
||||
def show_entries(entries, with_color=False, with_size=False):
|
||||
if with_color:
|
||||
ls_colors = LsColors()
|
||||
fmt = ls_colors.format
|
||||
@@ -20,7 +31,12 @@ def _prettify(entries, with_color=False):
|
||||
def fmt(entry):
|
||||
return entry["path"]
|
||||
|
||||
return [fmt(entry) for entry in entries]
|
||||
if with_size:
|
||||
ui.table([_format_entry(entry, fmt) for entry in entries])
|
||||
return
|
||||
|
||||
# NOTE: this is faster than ui.table for very large number of entries
|
||||
ui.write("\n".join(fmt(entry) for entry in entries))
|
||||
|
||||
|
||||
class CmdList(CmdBaseNoRepo):
|
||||
@@ -35,12 +51,13 @@ class CmdList(CmdBaseNoRepo):
|
||||
recursive=self.args.recursive,
|
||||
dvc_only=self.args.dvc_only,
|
||||
config=self.args.config,
|
||||
remote=self.args.remote,
|
||||
remote_config=self.args.remote_config,
|
||||
)
|
||||
if self.args.json:
|
||||
ui.write_json(entries)
|
||||
elif entries:
|
||||
entries = _prettify(entries, with_color=True)
|
||||
ui.write("\n".join(entries))
|
||||
show_entries(entries, with_color=True, with_size=self.args.size)
|
||||
return 0
|
||||
except DvcException:
|
||||
logger.exception("failed to list '%s'", self.args.url)
|
||||
@@ -89,6 +106,26 @@ def add_parser(subparsers, parent_parser):
|
||||
"in the target repository."
|
||||
),
|
||||
)
|
||||
list_parser.add_argument(
|
||||
"--remote",
|
||||
type=str,
|
||||
help="Remote name to set as a default in the target repository.",
|
||||
)
|
||||
list_parser.add_argument(
|
||||
"--remote-config",
|
||||
type=str,
|
||||
nargs="*",
|
||||
action=DictAction,
|
||||
help=(
|
||||
"Remote config options to merge with a remote's config (default or one "
|
||||
"specified by '--remote') in the target repository."
|
||||
),
|
||||
)
|
||||
list_parser.add_argument(
|
||||
"--size",
|
||||
action="store_true",
|
||||
help="Show sizes.",
|
||||
)
|
||||
list_parser.add_argument(
|
||||
"path",
|
||||
nargs="?",
|
||||
|
||||
+20
-6
@@ -2,10 +2,9 @@ import argparse
|
||||
import logging
|
||||
|
||||
from dvc.cli.command import CmdBaseNoRepo
|
||||
from dvc.cli.utils import append_doc_link
|
||||
from dvc.ui import ui
|
||||
from dvc.cli.utils import DictAction, append_doc_link
|
||||
|
||||
from .ls import _prettify
|
||||
from .ls import show_entries
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
@@ -14,10 +13,13 @@ class CmdListUrl(CmdBaseNoRepo):
|
||||
def run(self):
|
||||
from dvc.repo import Repo
|
||||
|
||||
entries = Repo.ls_url(self.args.url, recursive=self.args.recursive)
|
||||
entries = Repo.ls_url(
|
||||
self.args.url,
|
||||
recursive=self.args.recursive,
|
||||
fs_config=self.args.fs_config,
|
||||
)
|
||||
if entries:
|
||||
entries = _prettify(entries, with_color=True)
|
||||
ui.write("\n".join(entries))
|
||||
show_entries(entries, with_color=True, with_size=self.args.size)
|
||||
return 0
|
||||
|
||||
|
||||
@@ -40,4 +42,16 @@ def add_parser(subparsers, parent_parser):
|
||||
action="store_true",
|
||||
help="Recursively list files.",
|
||||
)
|
||||
lsurl_parser.add_argument(
|
||||
"--size",
|
||||
action="store_true",
|
||||
help="Show sizes.",
|
||||
)
|
||||
lsurl_parser.add_argument(
|
||||
"--fs-config",
|
||||
type=str,
|
||||
nargs="*",
|
||||
action=DictAction,
|
||||
help="Config options for the target url.",
|
||||
)
|
||||
lsurl_parser.set_defaults(func=CmdListUrl)
|
||||
|
||||
@@ -1,490 +0,0 @@
|
||||
import argparse
|
||||
from typing import Dict, List
|
||||
|
||||
from dvc.cli.command import CmdBase
|
||||
from dvc.cli.utils import append_doc_link, fix_subparsers
|
||||
from dvc.commands.config import CmdConfig
|
||||
from dvc.compare import TabularData
|
||||
from dvc.config import ConfigError
|
||||
from dvc.exceptions import DvcException
|
||||
from dvc.ui import ui
|
||||
from dvc.utils import format_link
|
||||
|
||||
|
||||
class MachineDisabledError(ConfigError):
|
||||
def __init__(self):
|
||||
super().__init__("Machine feature is disabled")
|
||||
|
||||
|
||||
class CmdMachineConfig(CmdConfig):
|
||||
def __init__(self, args):
|
||||
super().__init__(args)
|
||||
if not self.config["feature"].get("machine", False):
|
||||
raise MachineDisabledError
|
||||
|
||||
if getattr(self.args, "name", None):
|
||||
self.args.name = self.args.name.lower()
|
||||
|
||||
def _check_exists(self, conf):
|
||||
if self.args.name not in conf["machine"]:
|
||||
raise ConfigError(f"machine '{self.args.name}' doesn't exist.")
|
||||
|
||||
|
||||
class CmdMachineAdd(CmdMachineConfig):
|
||||
def run(self):
|
||||
from dvc.machine import validate_name
|
||||
|
||||
validate_name(self.args.name)
|
||||
|
||||
if self.args.default:
|
||||
ui.write(f"Setting '{self.args.name}' as a default machine.")
|
||||
|
||||
with self.config.edit(self.args.level) as conf:
|
||||
if self.args.name in conf["machine"] and not self.args.force:
|
||||
raise ConfigError(
|
||||
"machine '{}' already exists. Use `-f|--force` to "
|
||||
"overwrite it.".format(self.args.name)
|
||||
)
|
||||
|
||||
conf["machine"][self.args.name] = {"cloud": self.args.cloud}
|
||||
if self.args.default:
|
||||
conf["core"]["machine"] = self.args.name
|
||||
|
||||
return 0
|
||||
|
||||
|
||||
class CmdMachineRemove(CmdMachineConfig):
|
||||
def run(self):
|
||||
with self.config.edit(self.args.level) as conf:
|
||||
self._check_exists(conf)
|
||||
del conf["machine"][self.args.name]
|
||||
|
||||
up_to_level = self.args.level or "repo"
|
||||
# Remove core.machine refs to this machine in any shadowing configs
|
||||
for level in reversed(self.config.LEVELS):
|
||||
with self.config.edit(level) as conf:
|
||||
if conf["core"].get("machine") == self.args.name:
|
||||
del conf["core"]["machine"]
|
||||
|
||||
if level == up_to_level:
|
||||
break
|
||||
|
||||
return 0
|
||||
|
||||
|
||||
class CmdMachineList(CmdMachineConfig):
|
||||
TABLE_COLUMNS = [
|
||||
"name",
|
||||
"cloud",
|
||||
"region",
|
||||
"image",
|
||||
"spot",
|
||||
"spot_price",
|
||||
"instance_hdd_size",
|
||||
"instance_type",
|
||||
"ssh_private",
|
||||
"startup_script",
|
||||
]
|
||||
|
||||
PRIVATE_COLUMNS = ["ssh_private", "startup_script"]
|
||||
|
||||
def _hide_private(self, conf):
|
||||
for machine in conf:
|
||||
for column in self.PRIVATE_COLUMNS:
|
||||
if column in conf[machine]:
|
||||
conf[machine][column] = "***"
|
||||
|
||||
def _show_origin(self):
|
||||
levels = [self.args.level] if self.args.level else self.config.LEVELS
|
||||
for level in levels:
|
||||
conf = self.config.read(level)["machine"]
|
||||
if self.args.name:
|
||||
conf = conf.get(self.args.name, {})
|
||||
self._hide_private(conf)
|
||||
prefix = self._config_file_prefix(True, self.config, level)
|
||||
configs = list(self._format_config(conf, prefix))
|
||||
if configs:
|
||||
ui.write("\n".join(configs))
|
||||
|
||||
def _show_table(self):
|
||||
td = TabularData(self.TABLE_COLUMNS, fill_value="-")
|
||||
conf = self.config.read()["machine"]
|
||||
if self.args.name:
|
||||
conf = {self.args.name: conf.get(self.args.name, {})}
|
||||
self._hide_private(conf)
|
||||
for machine, machine_config in conf.items():
|
||||
machine_config["name"] = machine
|
||||
td.row_from_dict(machine_config)
|
||||
td.dropna("cols", "all")
|
||||
td.render()
|
||||
|
||||
def run(self):
|
||||
if self.args.show_origin:
|
||||
self._show_origin()
|
||||
else:
|
||||
self._show_table()
|
||||
return 0
|
||||
|
||||
|
||||
class CmdMachineModify(CmdMachineConfig):
|
||||
def run(self):
|
||||
from dvc.config import merge
|
||||
|
||||
with self.config.edit(self.args.level) as conf:
|
||||
merged = self.config.load_config_to_level(self.args.level)
|
||||
merge(merged, conf)
|
||||
self._check_exists(merged)
|
||||
|
||||
if self.args.name not in conf["machine"]:
|
||||
conf["machine"][self.args.name] = {}
|
||||
section = conf["machine"][self.args.name]
|
||||
if self.args.unset:
|
||||
section.pop(self.args.option, None)
|
||||
else:
|
||||
section[self.args.option] = self.args.value
|
||||
return 0
|
||||
|
||||
|
||||
class CmdMachineRename(CmdBase):
|
||||
def _check_exists(self, conf):
|
||||
if self.args.name not in conf["machine"]:
|
||||
raise ConfigError(f"machine '{self.args.name}' doesn't exist.")
|
||||
|
||||
def _rename_default(self, conf):
|
||||
if conf["core"].get("machine") == self.args.name:
|
||||
conf["core"]["machine"] = self.args.new
|
||||
|
||||
def _check_before_rename(self):
|
||||
from dvc.machine import validate_name
|
||||
|
||||
validate_name(self.args.new)
|
||||
|
||||
all_config = self.config.load_config_to_level(None)
|
||||
if self.args.new in all_config.get("machine", {}):
|
||||
raise ConfigError(
|
||||
f"Rename failed. Machine '{self.args.new}' already exists."
|
||||
)
|
||||
ui.write(f"Rename machine '{self.args.name}' to '{self.args.new}'.")
|
||||
|
||||
def run(self):
|
||||
self._check_before_rename()
|
||||
|
||||
with self.config.edit(self.args.level) as conf:
|
||||
self._check_exists(conf)
|
||||
conf["machine"][self.args.new] = conf["machine"][self.args.name]
|
||||
try:
|
||||
assert self.repo.machine
|
||||
self.repo.machine.rename(self.args.name, self.args.new)
|
||||
except DvcException as error:
|
||||
del conf["machine"][self.args.new]
|
||||
raise ConfigError("terraform rename failed") from error
|
||||
del conf["machine"][self.args.name]
|
||||
self._rename_default(conf)
|
||||
|
||||
up_to_level = self.args.level or "repo"
|
||||
for level in reversed(self.config.LEVELS):
|
||||
if level == up_to_level:
|
||||
break
|
||||
with self.config.edit(level) as level_conf:
|
||||
self._rename_default(level_conf)
|
||||
|
||||
return 0
|
||||
|
||||
|
||||
class CmdMachineDefault(CmdMachineConfig):
|
||||
def run(self):
|
||||
if self.args.name is None and not self.args.unset:
|
||||
conf = self.config.read(self.args.level)
|
||||
try:
|
||||
ui.write(conf["core"]["machine"])
|
||||
except KeyError:
|
||||
ui.write("No default machine set")
|
||||
return 1
|
||||
else:
|
||||
with self.config.edit(self.args.level) as conf:
|
||||
if self.args.unset:
|
||||
conf["core"].pop("machine", None)
|
||||
else:
|
||||
merged_conf = self.config.load_config_to_level(self.args.level)
|
||||
if (
|
||||
self.args.name in conf["machine"]
|
||||
or self.args.name in merged_conf["machine"]
|
||||
):
|
||||
conf["core"]["machine"] = self.args.name
|
||||
else:
|
||||
raise ConfigError(
|
||||
"default machine must be present in machine list."
|
||||
)
|
||||
return 0
|
||||
|
||||
|
||||
class CmdMachineCreate(CmdBase):
|
||||
def run(self):
|
||||
if self.repo.machine is None:
|
||||
raise MachineDisabledError
|
||||
|
||||
self.repo.machine.create(self.args.name)
|
||||
return 0
|
||||
|
||||
|
||||
class CmdMachineStatus(CmdBase):
|
||||
INSTANCE_FIELD = ["name", "instance", "status"]
|
||||
SHOWN_FIELD = [
|
||||
"cloud",
|
||||
"instance_ip",
|
||||
"instance_type",
|
||||
"instance_hdd_size",
|
||||
"instance_gpu",
|
||||
]
|
||||
FILL_VALUE = "-"
|
||||
|
||||
def _add_row(
|
||||
self,
|
||||
name: str,
|
||||
all_status: List[Dict],
|
||||
td: TabularData,
|
||||
):
|
||||
if not all_status:
|
||||
row = [
|
||||
name,
|
||||
self.FILL_VALUE,
|
||||
"offline",
|
||||
] # back to `None` after #7167
|
||||
td.append(row)
|
||||
for i, status in enumerate(all_status, start=1):
|
||||
row = [name, f"num_{i}", "running" if status else "offline"]
|
||||
for field in self.SHOWN_FIELD:
|
||||
value = str(status.get(field, ""))
|
||||
row.append(value)
|
||||
td.append(row)
|
||||
|
||||
def run(self):
|
||||
if self.repo.machine is None:
|
||||
raise MachineDisabledError
|
||||
|
||||
td = TabularData(
|
||||
self.INSTANCE_FIELD + self.SHOWN_FIELD, fill_value=self.FILL_VALUE
|
||||
)
|
||||
|
||||
if self.args.name:
|
||||
all_status = list(self.repo.machine.status(self.args.name))
|
||||
self._add_row(self.args.name, all_status, td)
|
||||
else:
|
||||
name_set = set()
|
||||
for level in self.repo.config.LEVELS:
|
||||
conf = self.repo.config.read(level)["machine"]
|
||||
name_set.update(conf.keys())
|
||||
name_list = list(name_set)
|
||||
for name in sorted(name_list):
|
||||
all_status = list(self.repo.machine.status(name))
|
||||
self._add_row(name, all_status, td)
|
||||
|
||||
td.dropna("cols", "all")
|
||||
td.render()
|
||||
return 0
|
||||
|
||||
|
||||
class CmdMachineDestroy(CmdBase):
|
||||
def run(self):
|
||||
if self.repo.machine is None:
|
||||
raise MachineDisabledError
|
||||
|
||||
self.repo.machine.destroy(self.args.name)
|
||||
return 0
|
||||
|
||||
|
||||
class CmdMachineSsh(CmdBase):
|
||||
def run(self):
|
||||
if self.repo.machine is None:
|
||||
raise MachineDisabledError
|
||||
|
||||
self.repo.machine.run_shell(self.args.name)
|
||||
return 0
|
||||
|
||||
|
||||
def add_parser(subparsers, parent_parser): # noqa: PLR0915
|
||||
from dvc.commands.config import parent_config_parser
|
||||
|
||||
machine_HELP = "Set up and manage cloud machines."
|
||||
machine_parser = subparsers.add_parser(
|
||||
"machine",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(machine_HELP, "machine"),
|
||||
# NOTE: suppress help during development to hide command
|
||||
# help=machine_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
|
||||
machine_subparsers = machine_parser.add_subparsers(
|
||||
dest="cmd",
|
||||
help="Use `dvc machine CMD --help` for command-specific help.",
|
||||
)
|
||||
|
||||
fix_subparsers(machine_subparsers)
|
||||
|
||||
machine_ADD_HELP = "Add a new data machine."
|
||||
machine_add_parser = machine_subparsers.add_parser(
|
||||
"add",
|
||||
parents=[parent_config_parser, parent_parser],
|
||||
description=append_doc_link(machine_ADD_HELP, "machine/add"),
|
||||
help=machine_ADD_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
machine_add_parser.add_argument("name", help="Name of the machine")
|
||||
machine_add_parser.add_argument(
|
||||
"cloud",
|
||||
help="Machine cloud. See full list of supported clouds at {}".format(
|
||||
format_link(
|
||||
"https://github.com/iterative/terraform-provider-iterative#machine"
|
||||
)
|
||||
),
|
||||
)
|
||||
machine_add_parser.add_argument(
|
||||
"-d",
|
||||
"--default",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Set as default machine.",
|
||||
)
|
||||
machine_add_parser.add_argument(
|
||||
"-f",
|
||||
"--force",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Force overwriting existing configs",
|
||||
)
|
||||
machine_add_parser.set_defaults(func=CmdMachineAdd)
|
||||
|
||||
machine_DEFAULT_HELP = "Set/unset the default machine."
|
||||
machine_default_parser = machine_subparsers.add_parser(
|
||||
"default",
|
||||
parents=[parent_config_parser, parent_parser],
|
||||
description=append_doc_link(machine_DEFAULT_HELP, "machine/default"),
|
||||
help=machine_DEFAULT_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
machine_default_parser.add_argument("name", nargs="?", help="Name of the machine")
|
||||
machine_default_parser.add_argument(
|
||||
"-u",
|
||||
"--unset",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Unset default machine.",
|
||||
)
|
||||
machine_default_parser.set_defaults(func=CmdMachineDefault)
|
||||
|
||||
machine_LIST_HELP = "List the configuration of one/all machines."
|
||||
machine_list_parser = machine_subparsers.add_parser(
|
||||
"list",
|
||||
parents=[parent_config_parser, parent_parser],
|
||||
description=append_doc_link(machine_LIST_HELP, "machine/list"),
|
||||
help=machine_LIST_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
machine_list_parser.add_argument(
|
||||
"--show-origin",
|
||||
default=False,
|
||||
action="store_true",
|
||||
help="Show the source file containing each config value.",
|
||||
)
|
||||
machine_list_parser.add_argument(
|
||||
"name",
|
||||
nargs="?",
|
||||
type=str,
|
||||
help="name of machine to specify",
|
||||
)
|
||||
machine_list_parser.set_defaults(func=CmdMachineList)
|
||||
machine_MODIFY_HELP = "Modify the configuration of an machine."
|
||||
machine_modify_parser = machine_subparsers.add_parser(
|
||||
"modify",
|
||||
parents=[parent_config_parser, parent_parser],
|
||||
description=append_doc_link(machine_MODIFY_HELP, "machine/modify"),
|
||||
help=machine_MODIFY_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
machine_modify_parser.add_argument("name", help="Name of the machine")
|
||||
machine_modify_parser.add_argument("option", help="Name of the option to modify.")
|
||||
machine_modify_parser.add_argument(
|
||||
"value", nargs="?", help="(optional) Value of the option."
|
||||
)
|
||||
machine_modify_parser.add_argument(
|
||||
"-u",
|
||||
"--unset",
|
||||
default=False,
|
||||
action="store_true",
|
||||
help="Unset option.",
|
||||
)
|
||||
machine_modify_parser.set_defaults(func=CmdMachineModify)
|
||||
|
||||
machine_RENAME_HELP = "Rename a machine "
|
||||
machine_rename_parser = machine_subparsers.add_parser(
|
||||
"rename",
|
||||
parents=[parent_config_parser, parent_parser],
|
||||
description=append_doc_link(machine_RENAME_HELP, "remote/rename"),
|
||||
help=machine_RENAME_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
machine_rename_parser.add_argument("name", help="Machine to be renamed")
|
||||
machine_rename_parser.add_argument("new", help="New name of the machine")
|
||||
machine_rename_parser.set_defaults(func=CmdMachineRename)
|
||||
|
||||
machine_REMOVE_HELP = "Remove an machine."
|
||||
machine_remove_parser = machine_subparsers.add_parser(
|
||||
"remove",
|
||||
parents=[parent_config_parser, parent_parser],
|
||||
description=append_doc_link(machine_REMOVE_HELP, "machine/remove"),
|
||||
help=machine_REMOVE_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
machine_remove_parser.add_argument("name", help="Name of the machine to remove.")
|
||||
machine_remove_parser.set_defaults(func=CmdMachineRemove)
|
||||
|
||||
machine_CREATE_HELP = "Create and start a machine instance."
|
||||
machine_create_parser = machine_subparsers.add_parser(
|
||||
"create",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(machine_CREATE_HELP, "machine/create"),
|
||||
help=machine_CREATE_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
machine_create_parser.add_argument("name", help="Name of the machine to create.")
|
||||
machine_create_parser.set_defaults(func=CmdMachineCreate)
|
||||
|
||||
machine_STATUS_HELP = "List the status of running instances for one/all machines."
|
||||
machine_status_parser = machine_subparsers.add_parser(
|
||||
"status",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(machine_STATUS_HELP, "machine/status"),
|
||||
help=machine_STATUS_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
machine_status_parser.add_argument(
|
||||
"name", nargs="?", help="(optional) Name of the machine."
|
||||
)
|
||||
machine_status_parser.set_defaults(func=CmdMachineStatus)
|
||||
|
||||
machine_DESTROY_HELP = "Destroy an machine instance."
|
||||
machine_destroy_parser = machine_subparsers.add_parser(
|
||||
"destroy",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(machine_DESTROY_HELP, "machine/destroy"),
|
||||
help=machine_DESTROY_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
machine_destroy_parser.add_argument(
|
||||
"name", help="Name of the machine instance to destroy."
|
||||
)
|
||||
machine_destroy_parser.set_defaults(func=CmdMachineDestroy)
|
||||
|
||||
machine_SSH_HELP = "Connect to a machine via SSH."
|
||||
machine_ssh_parser = machine_subparsers.add_parser(
|
||||
"ssh",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(machine_SSH_HELP, "machine/ssh"),
|
||||
help=machine_SSH_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
machine_ssh_parser.add_argument(
|
||||
"name", help="Name of the machine instance to connect to."
|
||||
)
|
||||
machine_ssh_parser.set_defaults(func=CmdMachineSsh)
|
||||
@@ -30,6 +30,7 @@ def add_parser(subparsers, parent_parser):
|
||||
|
||||
move_parser = subparsers.add_parser(
|
||||
"move",
|
||||
aliases=["mv"],
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(MOVE_DESCRIPTION, "move"),
|
||||
help=MOVE_HELP,
|
||||
|
||||
@@ -30,8 +30,8 @@ class CmdRemoteAdd(CmdRemote):
|
||||
with self.config.edit(self.args.level) as conf:
|
||||
if self.args.name in conf["remote"] and not self.args.force:
|
||||
raise ConfigError(
|
||||
"remote '{}' already exists. Use `-f|--force` to "
|
||||
"overwrite it.".format(self.args.name)
|
||||
f"remote '{self.args.name}' already exists. Use `-f|--force` to "
|
||||
"overwrite it."
|
||||
)
|
||||
|
||||
conf["remote"][self.args.name] = {"url": self.args.url}
|
||||
|
||||
@@ -26,6 +26,7 @@ def add_parser(subparsers, parent_parser):
|
||||
)
|
||||
remove_parser = subparsers.add_parser(
|
||||
"remove",
|
||||
aliases=["rm"],
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(REMOVE_HELP, "remove"),
|
||||
help=REMOVE_HELP,
|
||||
|
||||
+4
-5
@@ -57,7 +57,7 @@ class TabularData(MutableSequence[Sequence["CellT"]]):
|
||||
return self._columns[name]
|
||||
|
||||
def items(self) -> ItemsView[str, Column]:
|
||||
projection = {k: self.column(k) for k in self.keys()} # noqa: SIM118
|
||||
projection = {k: self.column(k) for k in self.keys()}
|
||||
return projection.items()
|
||||
|
||||
def keys(self) -> List[str]:
|
||||
@@ -171,8 +171,7 @@ class TabularData(MutableSequence[Sequence["CellT"]]):
|
||||
self.add_column(key)
|
||||
|
||||
row: List["CellT"] = [
|
||||
with_value(d.get(key), self._fill_value)
|
||||
for key in self.keys() # noqa: SIM118
|
||||
with_value(d.get(key), self._fill_value) for key in self.keys()
|
||||
]
|
||||
self.append(row)
|
||||
|
||||
@@ -227,7 +226,7 @@ class TabularData(MutableSequence[Sequence["CellT"]]):
|
||||
to_drop -= match_line
|
||||
|
||||
if axis == "rows":
|
||||
for name in self.keys(): # noqa: SIM118
|
||||
for name in self.keys():
|
||||
self._columns[name] = Column(
|
||||
[x for n, x in enumerate(self._columns[name]) if n not in to_drop]
|
||||
)
|
||||
@@ -275,7 +274,7 @@ class TabularData(MutableSequence[Sequence["CellT"]]):
|
||||
else:
|
||||
unique_rows.append(tuple_row)
|
||||
|
||||
for name in self.keys(): # noqa: SIM118
|
||||
for name in self.keys():
|
||||
self._columns[name] = Column(
|
||||
[
|
||||
x
|
||||
|
||||
+63
-16
@@ -90,20 +90,30 @@ class Config(dict):
|
||||
def __init__(
|
||||
self,
|
||||
dvc_dir: Optional["StrPath"] = None,
|
||||
local_dvc_dir: Optional["StrPath"] = None,
|
||||
validate: bool = True,
|
||||
fs: Optional["FileSystem"] = None,
|
||||
config: Optional["DictStrAny"] = None,
|
||||
remote: Optional[str] = None,
|
||||
remote_config: Optional["DictStrAny"] = None,
|
||||
): # pylint: disable=super-init-not-called
|
||||
from dvc.fs import LocalFileSystem
|
||||
|
||||
dvc_dir = os.fspath(dvc_dir) if dvc_dir else None
|
||||
self.dvc_dir = dvc_dir
|
||||
self.wfs = LocalFileSystem()
|
||||
self.fs = fs or self.wfs
|
||||
|
||||
if dvc_dir:
|
||||
self.dvc_dir = self.fs.path.abspath(self.fs.path.realpath(dvc_dir))
|
||||
self.dvc_dir = self.fs.path.abspath(dvc_dir)
|
||||
|
||||
self.load(validate=validate, config=config)
|
||||
self.local_dvc_dir = local_dvc_dir
|
||||
if not fs and not local_dvc_dir:
|
||||
self.local_dvc_dir = dvc_dir
|
||||
|
||||
self.load(
|
||||
validate=validate, config=config, remote=remote, remote_config=remote_config
|
||||
)
|
||||
|
||||
@classmethod
|
||||
def from_cwd(cls, fs: Optional["FileSystem"] = None, **kwargs):
|
||||
@@ -136,7 +146,9 @@ class Config(dict):
|
||||
|
||||
if self.dvc_dir is not None:
|
||||
files["repo"] = self.fs.path.join(self.dvc_dir, self.CONFIG)
|
||||
files["local"] = self.fs.path.join(self.dvc_dir, self.CONFIG_LOCAL)
|
||||
|
||||
if self.local_dvc_dir is not None:
|
||||
files["local"] = self.wfs.path.join(self.local_dvc_dir, self.CONFIG_LOCAL)
|
||||
|
||||
return files
|
||||
|
||||
@@ -154,7 +166,16 @@ class Config(dict):
|
||||
with open(config_file, "w+", encoding="utf-8"):
|
||||
return Config(dvc_dir)
|
||||
|
||||
def load(self, validate: bool = True, config: Optional["DictStrAny"] = None):
|
||||
def merge(self, config):
|
||||
merge(self, config)
|
||||
|
||||
def load(
|
||||
self,
|
||||
validate: bool = True,
|
||||
config: Optional["DictStrAny"] = None,
|
||||
remote: Optional[str] = None,
|
||||
remote_config: Optional["DictStrAny"] = None,
|
||||
):
|
||||
"""Loads config from all the config files.
|
||||
|
||||
Raises:
|
||||
@@ -169,6 +190,17 @@ class Config(dict):
|
||||
conf = self.validate(conf)
|
||||
|
||||
self.clear()
|
||||
|
||||
if remote:
|
||||
conf["core"]["remote"] = remote
|
||||
|
||||
if remote_config:
|
||||
remote = remote or conf["core"].get("remote")
|
||||
if not remote:
|
||||
raise ValueError("Missing remote name")
|
||||
|
||||
merge(conf, {"remote": {remote: remote_config}})
|
||||
|
||||
self.update(conf)
|
||||
|
||||
def _get_fs(self, level):
|
||||
@@ -229,21 +261,30 @@ class Config(dict):
|
||||
return conf
|
||||
|
||||
@staticmethod
|
||||
def _load_paths(conf, filename):
|
||||
abs_conf_dir = os.path.abspath(os.path.dirname(filename))
|
||||
def _resolve(conf_dir, path):
|
||||
from .config_schema import ExpPath, RelPath
|
||||
|
||||
def resolve(path):
|
||||
from .config_schema import RelPath
|
||||
if re.match(r"\w+://", path):
|
||||
return path
|
||||
|
||||
if os.path.isabs(path) or re.match(r"\w+://", path):
|
||||
return path
|
||||
if os.path.isabs(path):
|
||||
return path
|
||||
|
||||
# on windows convert slashes to backslashes
|
||||
# to have path compatible with abs_conf_dir
|
||||
if os.path.sep == "\\" and "/" in path:
|
||||
path = path.replace("/", "\\")
|
||||
# on windows convert slashes to backslashes
|
||||
# to have path compatible with abs_conf_dir
|
||||
if os.path.sep == "\\" and "/" in path:
|
||||
path = path.replace("/", "\\")
|
||||
|
||||
return RelPath(os.path.join(abs_conf_dir, path))
|
||||
expanded = os.path.expanduser(path)
|
||||
if os.path.isabs(expanded):
|
||||
return ExpPath(expanded, path)
|
||||
|
||||
return RelPath(os.path.abspath(os.path.join(conf_dir, path)))
|
||||
|
||||
@classmethod
|
||||
def _load_paths(cls, conf, filename):
|
||||
conf_dir = os.path.abspath(os.path.dirname(filename))
|
||||
resolve = partial(cls._resolve, conf_dir)
|
||||
|
||||
return Config._map_dirs(conf, resolve)
|
||||
|
||||
@@ -252,11 +293,17 @@ class Config(dict):
|
||||
from dvc.fs import localfs
|
||||
from dvc.utils import relpath
|
||||
|
||||
from .config_schema import RelPath
|
||||
from .config_schema import ExpPath, RelPath
|
||||
|
||||
if re.match(r"\w+://", path):
|
||||
return path
|
||||
|
||||
if isinstance(path, ExpPath):
|
||||
return path.def_path
|
||||
|
||||
if os.path.expanduser(path) != path:
|
||||
return localfs.path.as_posix(path)
|
||||
|
||||
if isinstance(path, RelPath) or not os.path.isabs(path):
|
||||
path = relpath(path, conf_dir)
|
||||
return localfs.path.as_posix(path)
|
||||
|
||||
+14
-1
@@ -8,6 +8,7 @@ from voluptuous import (
|
||||
All,
|
||||
Any,
|
||||
Coerce,
|
||||
Exclusive,
|
||||
Invalid,
|
||||
Lower,
|
||||
Optional,
|
||||
@@ -74,6 +75,17 @@ def ByUrl(mapping): # noqa: N802
|
||||
return validate
|
||||
|
||||
|
||||
class ExpPath(str):
|
||||
__slots__ = ("def_path",)
|
||||
|
||||
def_path: str
|
||||
|
||||
def __new__(cls, string, def_path):
|
||||
ret = super().__new__(cls, string)
|
||||
ret.def_path = def_path
|
||||
return ret
|
||||
|
||||
|
||||
class RelPath(str):
|
||||
__slots__ = ()
|
||||
|
||||
@@ -324,7 +336,8 @@ SCHEMA = {
|
||||
},
|
||||
"hydra": {
|
||||
Optional("enabled", default=False): Bool,
|
||||
"config_dir": str,
|
||||
Exclusive("config_dir", "config_source"): str,
|
||||
Exclusive("config_module", "config_source"): str,
|
||||
"config_name": str,
|
||||
},
|
||||
"studio": {
|
||||
|
||||
+31
-20
@@ -4,6 +4,7 @@ import logging
|
||||
from typing import TYPE_CHECKING, Iterable, Optional, Set, Tuple
|
||||
|
||||
from dvc.config import NoRemoteError, RemoteConfigError
|
||||
from dvc.fs.callbacks import Callback
|
||||
from dvc.utils.objects import cached_property
|
||||
from dvc_data.hashfile.db import get_index
|
||||
from dvc_data.hashfile.transfer import TransferResult
|
||||
@@ -90,7 +91,7 @@ class DataCloud:
|
||||
if name:
|
||||
from dvc.fs import get_cloud_fs
|
||||
|
||||
cls, config, fs_path = get_cloud_fs(self.repo, name=name)
|
||||
cls, config, fs_path = get_cloud_fs(self.repo.config, name=name)
|
||||
|
||||
if config.get("worktree"):
|
||||
version_aware = config.get("version_aware")
|
||||
@@ -209,15 +210,20 @@ class DataCloud:
|
||||
cache = self.repo.cache.legacy
|
||||
else:
|
||||
cache = self.repo.cache.local
|
||||
return self.transfer(
|
||||
cache,
|
||||
odb,
|
||||
objs,
|
||||
jobs=jobs,
|
||||
dest_index=get_index(odb),
|
||||
cache_odb=cache,
|
||||
validate_status=self._log_missing,
|
||||
)
|
||||
with Callback.as_tqdm_callback(
|
||||
desc=f"Pushing to {odb.fs.unstrip_protocol(odb.path)}",
|
||||
unit="file",
|
||||
) as cb:
|
||||
return self.transfer(
|
||||
cache,
|
||||
odb,
|
||||
objs,
|
||||
jobs=jobs,
|
||||
dest_index=get_index(odb),
|
||||
cache_odb=cache,
|
||||
validate_status=self._log_missing,
|
||||
callback=cb,
|
||||
)
|
||||
|
||||
def pull(
|
||||
self,
|
||||
@@ -263,16 +269,21 @@ class DataCloud:
|
||||
cache = self.repo.cache.legacy
|
||||
else:
|
||||
cache = self.repo.cache.local
|
||||
return self.transfer(
|
||||
odb,
|
||||
cache,
|
||||
objs,
|
||||
jobs=jobs,
|
||||
src_index=get_index(odb),
|
||||
cache_odb=cache,
|
||||
verify=odb.verify,
|
||||
validate_status=self._log_missing,
|
||||
)
|
||||
with Callback.as_tqdm_callback(
|
||||
desc=f"Fetching from {odb.fs.unstrip_protocol(odb.path)}",
|
||||
unit="file",
|
||||
) as cb:
|
||||
return self.transfer(
|
||||
odb,
|
||||
cache,
|
||||
objs,
|
||||
jobs=jobs,
|
||||
src_index=get_index(odb),
|
||||
cache_odb=cache,
|
||||
verify=odb.verify,
|
||||
validate_status=self._log_missing,
|
||||
callback=cb,
|
||||
)
|
||||
|
||||
def status(
|
||||
self,
|
||||
|
||||
@@ -15,6 +15,7 @@ SCHEMA: Mapping[str, Any] = {
|
||||
**ARTIFACT_SCHEMA,
|
||||
**RepoDependency.REPO_SCHEMA,
|
||||
Output.PARAM_FILES: [DIR_FILES_SCHEMA],
|
||||
Output.PARAM_FS_CONFIG: dict,
|
||||
}
|
||||
|
||||
|
||||
@@ -36,7 +37,10 @@ def loadd_from(stage, d_list):
|
||||
p = d.pop(Output.PARAM_PATH, None)
|
||||
files = d.pop(Output.PARAM_FILES, None)
|
||||
hash_name = d.pop(Output.PARAM_HASH, None)
|
||||
ret.append(_get(stage, p, d, files=files, hash_name=hash_name))
|
||||
fs_config = d.pop(Output.PARAM_FS_CONFIG, None)
|
||||
ret.append(
|
||||
_get(stage, p, d, files=files, hash_name=hash_name, fs_config=fs_config)
|
||||
)
|
||||
return ret
|
||||
|
||||
|
||||
|
||||
@@ -44,13 +44,10 @@ class Dependency(Output):
|
||||
if self.fs.version_aware:
|
||||
self.fs_path = self.fs.path.version_path(self.fs_path, rev)
|
||||
self.meta = self.get_meta()
|
||||
self.def_path = self.fs.path.version_path(
|
||||
self.def_path, self.meta.version_id
|
||||
)
|
||||
self.fs_path = self.fs.path.version_path(self.fs_path, self.meta.version_id)
|
||||
|
||||
def download(self, to, jobs=None):
|
||||
fs_download(self.fs, self.fs_path, to, jobs=jobs)
|
||||
fs_download(self.fs, self.fs_path, to.fs_path, jobs=jobs)
|
||||
|
||||
def save(self):
|
||||
super().save()
|
||||
|
||||
+24
-7
@@ -1,6 +1,7 @@
|
||||
from copy import deepcopy
|
||||
from typing import TYPE_CHECKING, Dict, Optional, Union
|
||||
|
||||
from voluptuous import Required
|
||||
from voluptuous import Any, Required
|
||||
|
||||
from dvc.utils import as_posix
|
||||
|
||||
@@ -17,17 +18,19 @@ class RepoDependency(Dependency):
|
||||
PARAM_REV = "rev"
|
||||
PARAM_REV_LOCK = "rev_lock"
|
||||
PARAM_CONFIG = "config"
|
||||
PARAM_REMOTE = "remote"
|
||||
|
||||
REPO_SCHEMA = {
|
||||
PARAM_REPO: {
|
||||
Required(PARAM_URL): str,
|
||||
PARAM_REV: str,
|
||||
PARAM_REV_LOCK: str,
|
||||
PARAM_CONFIG: str,
|
||||
PARAM_CONFIG: Any(str, dict),
|
||||
PARAM_REMOTE: Any(str, dict),
|
||||
}
|
||||
}
|
||||
|
||||
def __init__(self, def_repo: Dict[str, str], stage: "Stage", *args, **kwargs):
|
||||
def __init__(self, def_repo: Dict[str, Any], stage: "Stage", *args, **kwargs):
|
||||
self.def_repo = def_repo
|
||||
super().__init__(stage, *args, **kwargs)
|
||||
|
||||
@@ -76,6 +79,10 @@ class RepoDependency(Dependency):
|
||||
if config:
|
||||
repo[self.PARAM_CONFIG] = config
|
||||
|
||||
remote = self.def_repo.get(self.PARAM_REMOTE)
|
||||
if remote:
|
||||
repo[self.PARAM_REMOTE] = remote
|
||||
|
||||
return {
|
||||
self.PARAM_PATH: self.def_path,
|
||||
self.PARAM_REPO: repo,
|
||||
@@ -99,11 +106,19 @@ class RepoDependency(Dependency):
|
||||
from dvc.config import Config
|
||||
from dvc.fs import DVCFileSystem
|
||||
|
||||
conf = self.def_repo.get("config")
|
||||
if conf:
|
||||
config = Config.load_file(conf)
|
||||
rem = self.def_repo.get("remote")
|
||||
if isinstance(rem, dict):
|
||||
remote = None
|
||||
remote_config = rem
|
||||
else:
|
||||
config = {}
|
||||
remote = rem
|
||||
remote_config = None
|
||||
|
||||
conf = self.def_repo.get("config", {})
|
||||
if isinstance(conf, dict):
|
||||
config = deepcopy(conf)
|
||||
else:
|
||||
config = Config.load_file(conf)
|
||||
|
||||
config["cache"] = self.repo.config["cache"]
|
||||
config["cache"]["dir"] = self.repo.cache.local_cache_dir
|
||||
@@ -113,6 +128,8 @@ class RepoDependency(Dependency):
|
||||
rev=rev or self._get_rev(locked=locked),
|
||||
subrepos=True,
|
||||
config=config,
|
||||
remote=remote,
|
||||
remote_config=remote_config,
|
||||
)
|
||||
|
||||
def _get_rev(self, locked: bool = True):
|
||||
|
||||
+22
-14
@@ -1,9 +1,12 @@
|
||||
"""Exceptions raised by the dvc."""
|
||||
import errno
|
||||
from typing import Dict, List
|
||||
from typing import TYPE_CHECKING, Dict, List, Set
|
||||
|
||||
from dvc.utils import format_link
|
||||
|
||||
if TYPE_CHECKING:
|
||||
from dvc.stage import Stage
|
||||
|
||||
|
||||
class DvcException(Exception):
|
||||
"""Base class for all dvc exceptions."""
|
||||
@@ -31,24 +34,25 @@ class OutputDuplicationError(DvcException):
|
||||
stages (list): list of paths to stages.
|
||||
"""
|
||||
|
||||
def __init__(self, output, stages):
|
||||
def __init__(self, output: str, stages: Set["Stage"]):
|
||||
from funcy import first
|
||||
|
||||
assert isinstance(output, str)
|
||||
assert all(hasattr(stage, "relpath") for stage in stages)
|
||||
msg = ""
|
||||
stage_names = [s.addressing for s in stages]
|
||||
stages_str = " ".join(stage_names)
|
||||
if len(stages) == 1:
|
||||
stage_name = first(stages)
|
||||
msg = f"output '{output}' is already specified in {stage_name}."
|
||||
stage = first(stages)
|
||||
msg = (
|
||||
f"output '{output}' is already specified in {stage}."
|
||||
f"\nUse `dvc remove {stage.addressing}` to stop tracking the "
|
||||
"overlapping output."
|
||||
)
|
||||
else:
|
||||
msg = "output '{}' is already specified in stages:\n{}".format(
|
||||
output, "\n".join(f"\t- {s}" for s in stage_names)
|
||||
stage_names = "\n".join(["\t- " + s.addressing for s in stages])
|
||||
msg = (
|
||||
f"output '{output}' is specified in:\n{stage_names}"
|
||||
"\nUse `dvc remove` with any of the above targets to stop tracking the "
|
||||
"overlapping output."
|
||||
)
|
||||
msg += (
|
||||
f"\nUse `dvc remove {stages_str}` to stop tracking the overlapping output."
|
||||
)
|
||||
super().__init__(msg)
|
||||
self.stages = stages
|
||||
self.output = output
|
||||
@@ -71,6 +75,10 @@ class OutputNotFoundError(DvcException):
|
||||
)
|
||||
|
||||
|
||||
class StageNotFoundError(DvcException):
|
||||
pass
|
||||
|
||||
|
||||
class StagePathAsOutputError(DvcException):
|
||||
"""Thrown if directory that stage is going to be saved in is specified as
|
||||
an output of another stage.
|
||||
@@ -192,7 +200,7 @@ class ETagMismatchError(DvcException):
|
||||
def __init__(self, etag, cached_etag):
|
||||
super().__init__(
|
||||
"ETag mismatch detected when copying file to cache! "
|
||||
"(expected: '{}', actual: '{}')".format(etag, cached_etag)
|
||||
f"(expected: '{etag}', actual: '{cached_etag}')"
|
||||
)
|
||||
|
||||
|
||||
@@ -293,7 +301,7 @@ class URLMissingError(DvcException):
|
||||
super().__init__(f"The path '{url}' does not exist")
|
||||
|
||||
|
||||
class IsADirectoryError(DvcException): # noqa,pylint:disable=redefined-builtin
|
||||
class IsADirectoryError(DvcException): # noqa: A001,pylint:disable=redefined-builtin
|
||||
"""Raised when a file operation is requested on a directory."""
|
||||
|
||||
|
||||
|
||||
+35
-11
@@ -1,3 +1,4 @@
|
||||
from typing import Optional
|
||||
from urllib.parse import urlparse
|
||||
|
||||
from dvc_http import HTTPFileSystem, HTTPSFileSystem # noqa: F401
|
||||
@@ -18,7 +19,7 @@ from dvc_objects.fs import ( # noqa: F401
|
||||
system,
|
||||
utils,
|
||||
)
|
||||
from dvc_objects.fs.base import AnyFSPath, FileSystem # noqa: F401
|
||||
from dvc_objects.fs.base import AnyFSPath, FileSystem # noqa: F401, TCH001
|
||||
from dvc_objects.fs.errors import ( # noqa: F401
|
||||
AuthError,
|
||||
ConfigError,
|
||||
@@ -48,18 +49,45 @@ known_implementations.update(
|
||||
# pylint: enable=unused-import
|
||||
|
||||
|
||||
def download(fs, fs_path, to, jobs=None):
|
||||
def download(fs: "FileSystem", fs_path: str, to: str, jobs: Optional[int] = None):
|
||||
with Callback.as_tqdm_callback(
|
||||
desc=f"Downloading {fs.path.name(fs_path)}",
|
||||
unit="files",
|
||||
) as cb:
|
||||
fs.get(fs_path, to.fs_path, batch_size=jobs, callback=cb)
|
||||
# NOTE: We use dvc-objects generic.copy over fs.get since it makes file
|
||||
# download atomic and avoids fsspec glob/regex path expansion.
|
||||
if fs.isdir(fs_path):
|
||||
from_infos = [
|
||||
path
|
||||
for path in fs.find(fs_path)
|
||||
if not path.endswith(fs.path.flavour.sep)
|
||||
]
|
||||
if not from_infos:
|
||||
return localfs.makedirs(to, exist_ok=True)
|
||||
to_infos = [
|
||||
localfs.path.join(to, *fs.path.relparts(info, fs_path))
|
||||
for info in from_infos
|
||||
]
|
||||
else:
|
||||
from_infos = [fs_path]
|
||||
to_infos = [to]
|
||||
|
||||
cb.set_size(len(from_infos))
|
||||
jobs = jobs or fs.jobs
|
||||
generic.copy(
|
||||
fs,
|
||||
from_infos,
|
||||
localfs,
|
||||
to_infos,
|
||||
callback=cb,
|
||||
batch_size=jobs,
|
||||
)
|
||||
|
||||
|
||||
def parse_external_url(url, config=None):
|
||||
remote_config = dict(config) if config else {}
|
||||
remote_config["url"] = url
|
||||
fs_cls, fs_config, fs_path = get_cloud_fs(None, **remote_config)
|
||||
fs_cls, fs_config, fs_path = get_cloud_fs({}, **remote_config)
|
||||
fs = fs_cls(**fs_config)
|
||||
return fs, fs_path
|
||||
|
||||
@@ -105,18 +133,14 @@ def _resolve_remote_refs(config, remote_conf):
|
||||
return remote_conf
|
||||
|
||||
base = get_fs_config(config, name=parsed.netloc)
|
||||
cls, _, _ = _get_cloud_fs(config, **base)
|
||||
cls, _, _ = get_cloud_fs(config, **base)
|
||||
relpath = parsed.path.lstrip("/").replace("/", cls.sep)
|
||||
url = cls.sep.join((base["url"], relpath))
|
||||
return {**base, **remote_conf, "url": url}
|
||||
|
||||
|
||||
def get_cloud_fs(repo, **kwargs):
|
||||
repo_config = repo.config if repo else {}
|
||||
return _get_cloud_fs(repo_config, **kwargs)
|
||||
|
||||
|
||||
def _get_cloud_fs(repo_config, **kwargs):
|
||||
def get_cloud_fs(repo_config, **kwargs):
|
||||
repo_config = repo_config or {}
|
||||
core_config = repo_config.get("core", {})
|
||||
|
||||
remote_conf = get_fs_config(repo_config, **kwargs)
|
||||
|
||||
+18
-7
@@ -139,7 +139,7 @@ class _DVCFileSystem(AbstractFileSystem): # pylint:disable=abstract-method
|
||||
self.repo_factory = repo_factory
|
||||
|
||||
def _getcwd():
|
||||
relparts = ()
|
||||
relparts: Tuple[str, ...] = ()
|
||||
assert repo is not None
|
||||
if repo.fs.path.isin(repo.fs.path.getcwd(), repo.root_dir):
|
||||
relparts = repo.fs.path.relparts(repo.fs.path.getcwd(), repo.root_dir)
|
||||
@@ -162,7 +162,17 @@ class _DVCFileSystem(AbstractFileSystem): # pylint:disable=abstract-method
|
||||
if hasattr(repo, "dvc_dir"):
|
||||
self._datafss[key] = DataFileSystem(index=repo.index.data["repo"])
|
||||
|
||||
@functools.cached_property
|
||||
def fsid(self) -> str:
|
||||
from fsspec.utils import tokenize
|
||||
|
||||
return "dvcfs_" + tokenize(
|
||||
self.repo.url or self.repo.root_dir,
|
||||
self.repo.get_rev() if self.repo.scm else None,
|
||||
)
|
||||
|
||||
def _get_key(self, path: "StrPath") -> Key:
|
||||
path = os.fspath(path)
|
||||
parts = self.repo.fs.path.relparts(path, self.repo.root_dir)
|
||||
if parts == (os.curdir,):
|
||||
return ()
|
||||
@@ -261,15 +271,12 @@ class _DVCFileSystem(AbstractFileSystem): # pylint:disable=abstract-method
|
||||
try:
|
||||
return self.repo.fs.open(fs_path, mode=mode)
|
||||
except FileNotFoundError:
|
||||
repo, dvc_fs, subkey = self._get_subrepo_info(key)
|
||||
_, dvc_fs, subkey = self._get_subrepo_info(key)
|
||||
if not dvc_fs:
|
||||
raise
|
||||
|
||||
dvc_path = _get_dvc_path(dvc_fs, subkey)
|
||||
kw = {}
|
||||
if kwargs.get("cache_remote_stream", False):
|
||||
kw["cache_odb"] = repo.cache.local
|
||||
return dvc_fs.open(dvc_path, mode=mode, **kw)
|
||||
return dvc_fs.open(dvc_path, mode=mode, cache=kwargs.get("cache", False))
|
||||
|
||||
def isdvc(self, path, **kwargs) -> bool:
|
||||
"""Is this entry dvc-tracked?"""
|
||||
@@ -352,7 +359,7 @@ class _DVCFileSystem(AbstractFileSystem): # pylint:disable=abstract-method
|
||||
dvc_info = dvc_fs.fs.index.info(subkey)
|
||||
dvc_path = _get_dvc_path(dvc_fs, subkey)
|
||||
dvc_info["name"] = dvc_path
|
||||
except FileNotFoundError:
|
||||
except KeyError:
|
||||
pass
|
||||
|
||||
fs_info = None
|
||||
@@ -415,6 +422,10 @@ class DVCFileSystem(FileSystem):
|
||||
def fs(self) -> "_DVCFileSystem":
|
||||
return _DVCFileSystem(**self.fs_args)
|
||||
|
||||
@property
|
||||
def fsid(self) -> str:
|
||||
return self.fs.fsid
|
||||
|
||||
def isdvc(self, path, **kwargs) -> bool:
|
||||
return self.fs.isdvc(path, **kwargs)
|
||||
|
||||
|
||||
+3
-1
@@ -148,7 +148,9 @@ class DvcIgnorePatterns(DvcIgnore):
|
||||
return bool(self.pattern_list)
|
||||
|
||||
|
||||
CheckIgnoreResult = namedtuple("CheckIgnoreResult", ["file", "match", "patterns"])
|
||||
CheckIgnoreResult = namedtuple( # noqa: PYI024
|
||||
"CheckIgnoreResult", ["file", "match", "patterns"]
|
||||
)
|
||||
|
||||
|
||||
def _no_match(path):
|
||||
|
||||
+1
-1
@@ -160,7 +160,7 @@ class LoggerHandler(logging.StreamHandler):
|
||||
self.flush()
|
||||
except (BrokenPipeError, RecursionError):
|
||||
raise
|
||||
except Exception: # noqa, pylint: disable=broad-except
|
||||
except Exception: # noqa: BLE001, pylint: disable=broad-except
|
||||
self.handleError(record)
|
||||
|
||||
|
||||
|
||||
@@ -1,227 +0,0 @@
|
||||
import logging
|
||||
import os
|
||||
from typing import (
|
||||
TYPE_CHECKING,
|
||||
Any,
|
||||
Dict,
|
||||
Iterable,
|
||||
Iterator,
|
||||
Mapping,
|
||||
Optional,
|
||||
Tuple,
|
||||
Type,
|
||||
)
|
||||
|
||||
from dvc.exceptions import DvcException
|
||||
|
||||
if TYPE_CHECKING:
|
||||
from dvc.repo import Repo
|
||||
from dvc.types import StrPath
|
||||
|
||||
from .backend.base import BaseMachineBackend
|
||||
|
||||
BackendCls = Type[BaseMachineBackend]
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
RESERVED_NAMES = {"local", "localhost"}
|
||||
|
||||
DEFAULT_STARTUP_SCRIPT = """#!/bin/bash
|
||||
sudo apt-get update
|
||||
sudo apt-get install --yes python3 python3-pip
|
||||
python3 -m pip install --upgrade pip
|
||||
|
||||
pushd /etc/apt/sources.list.d
|
||||
sudo wget https://dvc.org/deb/dvc.list
|
||||
sudo apt-get update
|
||||
sudo apt-get install --yes dvc
|
||||
popd
|
||||
|
||||
sudo echo "OK" > /var/log/dvc-machine-init.log
|
||||
"""
|
||||
|
||||
|
||||
def validate_name(name: str):
|
||||
from dvc.exceptions import InvalidArgumentError
|
||||
|
||||
name = name.lower()
|
||||
if name in RESERVED_NAMES:
|
||||
raise InvalidArgumentError(
|
||||
f"Machine name '{name}' is reserved for internal DVC use."
|
||||
)
|
||||
|
||||
|
||||
class MachineBackends(Mapping):
|
||||
try:
|
||||
from .backend.terraform import TerraformBackend
|
||||
except ImportError:
|
||||
TerraformBackend = None # type: ignore[assignment, misc]
|
||||
|
||||
DEFAULT: Dict[str, Optional["BackendCls"]] = {
|
||||
"terraform": TerraformBackend,
|
||||
}
|
||||
|
||||
def __getitem__(self, key: str) -> "BaseMachineBackend":
|
||||
"""Lazily initialize backends and cache it afterwards"""
|
||||
initialized = self.initialized.get(key)
|
||||
if not initialized:
|
||||
backend = self.backends[key]
|
||||
initialized = backend(os.path.join(self.tmp_dir, key), **self.kwargs)
|
||||
self.initialized[key] = initialized
|
||||
return initialized
|
||||
|
||||
def __init__(
|
||||
self,
|
||||
selected: Optional[Iterable[str]],
|
||||
tmp_dir: "StrPath",
|
||||
**kwargs,
|
||||
) -> None:
|
||||
selected = selected or list(self.DEFAULT)
|
||||
self.backends: Dict[str, "BackendCls"] = {}
|
||||
for key in selected:
|
||||
cls = self.DEFAULT.get(key)
|
||||
if cls is None:
|
||||
raise DvcException(
|
||||
f"'dvc machine' backend '{key}' is missing required "
|
||||
"dependencies. Install them with:\n"
|
||||
f"\tpip install dvc[{key}]"
|
||||
)
|
||||
self.backends[key] = cls
|
||||
|
||||
self.initialized: Dict[str, "BaseMachineBackend"] = {}
|
||||
|
||||
self.tmp_dir = tmp_dir
|
||||
self.kwargs = kwargs
|
||||
|
||||
def __iter__(self):
|
||||
return iter(self.backends)
|
||||
|
||||
def __len__(self) -> int:
|
||||
return len(self.backends)
|
||||
|
||||
def close_initialized(self) -> None:
|
||||
for backend in self.initialized.values():
|
||||
backend.close()
|
||||
|
||||
|
||||
class MachineManager:
|
||||
"""Class that manages dvc cloud machines.
|
||||
|
||||
Args:
|
||||
repo (dvc.repo.Repo): repo instance that belongs to the repo that
|
||||
we are working on.
|
||||
|
||||
Raises:
|
||||
config.ConfigError: thrown when config has invalid format.
|
||||
"""
|
||||
|
||||
CLOUD_BACKENDS = {
|
||||
"aws": "terraform",
|
||||
"azure": "terraform",
|
||||
}
|
||||
|
||||
def __init__(
|
||||
self, repo: "Repo", backends: Optional[Iterable[str]] = None, **kwargs
|
||||
):
|
||||
self.repo = repo
|
||||
assert self.repo.tmp_dir
|
||||
tmp_dir = os.path.join(self.repo.tmp_dir, "machine")
|
||||
self.backends = MachineBackends(backends, tmp_dir=tmp_dir, **kwargs)
|
||||
|
||||
def get_config_and_backend(
|
||||
self,
|
||||
name: Optional[str] = None,
|
||||
) -> Tuple[dict, "BaseMachineBackend"]:
|
||||
from dvc.config import NoMachineError
|
||||
|
||||
if not name:
|
||||
name = self.repo.config["core"].get("machine")
|
||||
|
||||
if name:
|
||||
config = self._get_config(name=name)
|
||||
backend = self._get_backend(config["cloud"])
|
||||
return config, backend
|
||||
|
||||
if bool(self.repo.config["machine"]):
|
||||
error_msg = (
|
||||
"no machine specified. Setup default machine with\n"
|
||||
" dvc machine default <name>\n"
|
||||
)
|
||||
else:
|
||||
error_msg = (
|
||||
"no machine specified. Create a default machine with\n"
|
||||
" dvc machine add -d <name> <cloud>"
|
||||
)
|
||||
|
||||
raise NoMachineError(error_msg)
|
||||
|
||||
def _get_config(self, **kwargs):
|
||||
config = self.repo.config
|
||||
name = kwargs.get("name")
|
||||
if name:
|
||||
try:
|
||||
conf = config["machine"][name.lower()]
|
||||
conf["name"] = name
|
||||
except KeyError:
|
||||
from dvc.config import MachineNotFoundError
|
||||
|
||||
raise MachineNotFoundError( # noqa: B904
|
||||
f"machine '{name}' doesn't exist"
|
||||
)
|
||||
else:
|
||||
conf = kwargs
|
||||
return conf
|
||||
|
||||
def _get_backend(self, cloud: str) -> "BaseMachineBackend":
|
||||
from dvc.config import NoMachineError
|
||||
|
||||
try:
|
||||
backend = self.CLOUD_BACKENDS[cloud]
|
||||
return self.backends[backend]
|
||||
except KeyError:
|
||||
raise NoMachineError( # noqa: B904
|
||||
f"Machine platform '{cloud}' unsupported"
|
||||
)
|
||||
|
||||
def create(self, name: Optional[str]):
|
||||
"""Create and start the specified machine instance."""
|
||||
config, backend = self.get_config_and_backend(name)
|
||||
if "startup_script" in config:
|
||||
with open(config["startup_script"], encoding="utf-8") as fobj:
|
||||
startup_script = fobj.read()
|
||||
else:
|
||||
startup_script = DEFAULT_STARTUP_SCRIPT
|
||||
config["startup_script"] = startup_script
|
||||
config.pop("setup_script", None)
|
||||
return backend.create(**config)
|
||||
|
||||
def destroy(self, name: Optional[str]):
|
||||
"""Destroy the specified machine instance."""
|
||||
config, backend = self.get_config_and_backend(name)
|
||||
return backend.destroy(**config)
|
||||
|
||||
def get_sshfs(self, name: Optional[str]):
|
||||
config, backend = self.get_config_and_backend(name)
|
||||
return backend.get_sshfs(**config)
|
||||
|
||||
def run_shell(self, name: Optional[str]):
|
||||
config, backend = self.get_config_and_backend(name)
|
||||
return backend.run_shell(**config)
|
||||
|
||||
def status(self, name: str) -> Iterator[Dict[Any, Any]]:
|
||||
config, backend = self.get_config_and_backend(name)
|
||||
return backend.instances(**config)
|
||||
|
||||
def rename(self, name: str, new: str):
|
||||
"""move configuration to a new location if the machine is running."""
|
||||
config, backend = self.get_config_and_backend(name)
|
||||
return backend.rename(new=new, **config)
|
||||
|
||||
def get_executor_kwargs(self, name: Optional[str]):
|
||||
config, backend = self.get_config_and_backend(name)
|
||||
return backend.get_executor_kwargs(**config)
|
||||
|
||||
def get_setup_script(self, name: Optional[str]) -> Optional[str]:
|
||||
config, _backend = self.get_config_and_backend(name)
|
||||
return config.get("setup_script")
|
||||
@@ -1,50 +0,0 @@
|
||||
from abc import ABC, abstractmethod
|
||||
from contextlib import contextmanager
|
||||
from typing import TYPE_CHECKING, Iterator, Optional
|
||||
|
||||
if TYPE_CHECKING:
|
||||
from dvc_ssh import SSHFileSystem
|
||||
|
||||
from dvc.types import StrPath
|
||||
|
||||
|
||||
class BaseMachineBackend(ABC):
|
||||
def __init__(self, tmp_dir: "StrPath", **kwargs):
|
||||
self.tmp_dir = tmp_dir
|
||||
|
||||
@abstractmethod
|
||||
def create(self, name: Optional[str] = None, **config):
|
||||
"""Create and start an instance of the specified machine."""
|
||||
|
||||
@abstractmethod
|
||||
def destroy(self, name: Optional[str] = None, **config):
|
||||
"""Stop and destroy all instances of the specified machine."""
|
||||
|
||||
@abstractmethod
|
||||
def instances(self, name: Optional[str] = None, **config) -> Iterator[dict]:
|
||||
"""Iterate over status of all instances of the specified machine."""
|
||||
|
||||
def close(self): # noqa: B027
|
||||
pass
|
||||
|
||||
@abstractmethod
|
||||
def run_shell(self, name: Optional[str] = None, **config):
|
||||
"""Spawn an interactive SSH shell for the specified machine."""
|
||||
|
||||
@abstractmethod
|
||||
def get_executor_kwargs(self, name: str, **config) -> dict:
|
||||
"""Return SSHExecutor kwargs which can be used for DVC
|
||||
experiment/pipeline execution on the specified machine.
|
||||
"""
|
||||
|
||||
@abstractmethod
|
||||
@contextmanager
|
||||
def get_sshfs(
|
||||
self, name: Optional[str] = None, **config
|
||||
) -> Iterator["SSHFileSystem"]:
|
||||
"""Return an sshfs instance for the default directory on the
|
||||
specified machine."""
|
||||
|
||||
@abstractmethod
|
||||
def rename(self, name: str, new: str, **config):
|
||||
"""Rename a machine instance."""
|
||||
@@ -1,99 +0,0 @@
|
||||
import os
|
||||
from contextlib import contextmanager
|
||||
from functools import partial, partialmethod
|
||||
from typing import TYPE_CHECKING, Iterator, Optional
|
||||
|
||||
from dvc_ssh import DEFAULT_PORT, SSHFileSystem
|
||||
|
||||
from dvc.exceptions import DvcException
|
||||
|
||||
from .base import BaseMachineBackend
|
||||
|
||||
if TYPE_CHECKING:
|
||||
from dvc.types import StrPath
|
||||
|
||||
|
||||
@contextmanager
|
||||
def _sshfs(resource: dict):
|
||||
from tpi import TerraformProviderIterative
|
||||
|
||||
with TerraformProviderIterative.pemfile(resource) as pem:
|
||||
fs = SSHFileSystem(
|
||||
host=resource["instance_ip"],
|
||||
user="ubuntu",
|
||||
keyfile=pem,
|
||||
)
|
||||
yield fs
|
||||
|
||||
|
||||
class TerraformBackend(BaseMachineBackend):
|
||||
def __init__(self, tmp_dir: "StrPath", **kwargs):
|
||||
super().__init__(tmp_dir, **kwargs)
|
||||
os.makedirs(tmp_dir, exist_ok=True)
|
||||
|
||||
@contextmanager
|
||||
def make_tpi(self, name: str):
|
||||
from tpi import TPIError
|
||||
from tpi.terraform import TerraformBackend as TPIBackend
|
||||
|
||||
try:
|
||||
working_dir = os.path.join(self.tmp_dir, name)
|
||||
os.makedirs(working_dir, exist_ok=True)
|
||||
yield TPIBackend(working_dir=working_dir)
|
||||
except TPIError as exc:
|
||||
raise DvcException("TPI operation failed") from exc
|
||||
|
||||
def _tpi_func(self, fname, name: Optional[str] = None, **config):
|
||||
from tpi import TPIError
|
||||
|
||||
assert name
|
||||
with self.make_tpi(name) as tpi:
|
||||
func = getattr(tpi, fname)
|
||||
try:
|
||||
return func(name=name, **config)
|
||||
except TPIError as exc:
|
||||
raise DvcException(f"TPI {fname} failed") from exc
|
||||
|
||||
create = partialmethod(_tpi_func, "create") # type: ignore[assignment]
|
||||
destroy = partialmethod(_tpi_func, "destroy") # type: ignore[assignment]
|
||||
instances = partialmethod(_tpi_func, "instances") # type: ignore[assignment]
|
||||
run_shell = partialmethod(_tpi_func, "run_shell") # type: ignore[assignment]
|
||||
|
||||
def get_executor_kwargs(self, name: str, **config) -> dict:
|
||||
with self.make_tpi(name) as tpi:
|
||||
resource = tpi.default_resource(name)
|
||||
return {
|
||||
"host": resource["instance_ip"],
|
||||
"port": DEFAULT_PORT,
|
||||
"username": "ubuntu",
|
||||
"fs_factory": partial(_sshfs, dict(resource)),
|
||||
}
|
||||
|
||||
@contextmanager
|
||||
def get_sshfs( # pylint: disable=unused-argument
|
||||
self, name: Optional[str] = None, **config
|
||||
) -> Iterator["SSHFileSystem"]:
|
||||
assert name
|
||||
with self.make_tpi(name) as tpi:
|
||||
resource = tpi.default_resource(name)
|
||||
with _sshfs(resource) as fs:
|
||||
yield fs
|
||||
|
||||
def rename(self, name: str, new: str, **config):
|
||||
"""rename a dvc machine instance to a new name"""
|
||||
import shutil
|
||||
|
||||
mtype = "iterative_machine"
|
||||
|
||||
new_dir = os.path.join(self.tmp_dir, new)
|
||||
old_dir = os.path.join(self.tmp_dir, name)
|
||||
if os.path.exists(new_dir):
|
||||
raise DvcException(f"rename failed: path {new_dir} already exists")
|
||||
|
||||
if not os.path.exists(old_dir):
|
||||
return
|
||||
|
||||
with self.make_tpi(name) as tpi:
|
||||
tpi.state_mv(f"{mtype}.{name}", f"{mtype}.{new}", **config)
|
||||
|
||||
shutil.move(old_dir, new_dir)
|
||||
+74
-35
@@ -97,6 +97,7 @@ def loadd_from(stage, d_list):
|
||||
files = d.pop(Output.PARAM_FILES, None)
|
||||
push = d.pop(Output.PARAM_PUSH, True)
|
||||
hash_name = d.pop(Output.PARAM_HASH, None)
|
||||
fs_config = d.pop(Output.PARAM_FS_CONFIG, None)
|
||||
ret.append(
|
||||
_get(
|
||||
stage,
|
||||
@@ -111,6 +112,7 @@ def loadd_from(stage, d_list):
|
||||
files=files,
|
||||
push=push,
|
||||
hash_name=hash_name,
|
||||
fs_config=fs_config,
|
||||
)
|
||||
)
|
||||
return ret
|
||||
@@ -313,6 +315,7 @@ class Output:
|
||||
PARAM_PUSH = "push"
|
||||
PARAM_CLOUD = "cloud"
|
||||
PARAM_HASH = "hash"
|
||||
PARAM_FS_CONFIG = "fs_config"
|
||||
|
||||
DoesNotExistError: Type[DvcException] = OutputDoesNotExistError
|
||||
IsNotFileOrDirError: Type[DvcException] = OutputIsNotFileOrDirError
|
||||
@@ -351,10 +354,15 @@ class Output:
|
||||
if meta.version_id or files:
|
||||
fs_kwargs["version_aware"] = True
|
||||
|
||||
self.def_fs_config = fs_config
|
||||
if fs_config is not None:
|
||||
fs_kwargs.update(**fs_config)
|
||||
|
||||
fs_cls, fs_config, fs_path = get_cloud_fs(self.repo, url=path, **fs_kwargs)
|
||||
fs_cls, fs_config, fs_path = get_cloud_fs(
|
||||
self.repo.config if self.repo else {},
|
||||
url=path,
|
||||
**fs_kwargs,
|
||||
)
|
||||
self.fs = fs_cls(**fs_config)
|
||||
|
||||
if (
|
||||
@@ -484,6 +492,9 @@ class Output:
|
||||
):
|
||||
return str(self.def_path)
|
||||
|
||||
if not self.fs.path.isin(self.fs_path, self.repo.root_dir):
|
||||
return self.fs_path
|
||||
|
||||
cur_dir = self.fs.path.getcwd()
|
||||
if self.fs.path.isin(cur_dir, self.repo.root_dir):
|
||||
return self.fs.path.relpath(self.fs_path, cur_dir)
|
||||
@@ -780,13 +791,18 @@ class Output:
|
||||
self.hash_name,
|
||||
ignore=self.dvcignore,
|
||||
)
|
||||
otransfer(
|
||||
staging,
|
||||
self.cache,
|
||||
{obj.hash_info},
|
||||
shallow=False,
|
||||
hardlink=hardlink,
|
||||
)
|
||||
with Callback.as_tqdm_callback(
|
||||
desc=f"Committing {self} to cache",
|
||||
unit="file",
|
||||
) as cb:
|
||||
otransfer(
|
||||
staging,
|
||||
self.cache,
|
||||
{obj.hash_info},
|
||||
shallow=False,
|
||||
hardlink=hardlink,
|
||||
callback=cb,
|
||||
)
|
||||
if relink:
|
||||
rel = self.fs.path.relpath(filter_info or self.fs_path)
|
||||
with CheckoutCallback(desc=f"Checking out {rel}", unit="files") as cb:
|
||||
@@ -815,13 +831,18 @@ class Output:
|
||||
save_obj = obj.filter(prefix)
|
||||
assert isinstance(save_obj, Tree)
|
||||
checkout_obj = save_obj.get_obj(self.cache, prefix)
|
||||
otransfer(
|
||||
staging,
|
||||
self.cache,
|
||||
{save_obj.hash_info} | {oid for _, _, oid in save_obj},
|
||||
shallow=True,
|
||||
hardlink=hardlink,
|
||||
)
|
||||
with Callback.as_tqdm_callback(
|
||||
desc=f"Committing {self} to cache",
|
||||
unit="file",
|
||||
) as cb:
|
||||
otransfer(
|
||||
staging,
|
||||
self.cache,
|
||||
{save_obj.hash_info} | {oid for _, _, oid in save_obj},
|
||||
shallow=True,
|
||||
hardlink=hardlink,
|
||||
callback=cb,
|
||||
)
|
||||
return checkout_obj
|
||||
|
||||
def dumpd(self, **kwargs): # noqa: C901, PLR0912
|
||||
@@ -855,6 +876,9 @@ class Output:
|
||||
|
||||
ret[self.PARAM_PATH] = path
|
||||
|
||||
if self.def_fs_config:
|
||||
ret[self.PARAM_FS_CONFIG] = self.def_fs_config
|
||||
|
||||
if not self.IS_DEPENDENCY:
|
||||
ret.update(self.annot.to_dict())
|
||||
if not self.use_cache:
|
||||
@@ -1017,7 +1041,9 @@ class Output:
|
||||
if odb is None:
|
||||
odb = self.cache
|
||||
|
||||
cls, config, from_info = get_cloud_fs(self.repo, url=source)
|
||||
cls, config, from_info = get_cloud_fs(
|
||||
self.repo.config if self.repo else {}, url=source
|
||||
)
|
||||
from_fs = cls(**config)
|
||||
|
||||
# When running import-url --to-remote / add --to-remote/-o ... we
|
||||
@@ -1039,14 +1065,19 @@ class Output:
|
||||
upload=upload,
|
||||
no_progress_bar=no_progress_bar,
|
||||
)
|
||||
otransfer(
|
||||
staging,
|
||||
odb,
|
||||
{obj.hash_info},
|
||||
jobs=jobs,
|
||||
hardlink=False,
|
||||
shallow=False,
|
||||
)
|
||||
with Callback.as_tqdm_callback(
|
||||
desc=f"Transferring to {odb.fs.unstrip_protocol(odb.path)}",
|
||||
unit="file",
|
||||
) as cb:
|
||||
otransfer(
|
||||
staging,
|
||||
odb,
|
||||
{obj.hash_info},
|
||||
jobs=jobs,
|
||||
hardlink=False,
|
||||
shallow=False,
|
||||
callback=cb,
|
||||
)
|
||||
|
||||
self.hash_info = obj.hash_info
|
||||
self.files = None
|
||||
@@ -1066,7 +1097,7 @@ class Output:
|
||||
return len(obj) if obj else 0
|
||||
|
||||
def unprotect(self):
|
||||
if self.exists:
|
||||
if self.exists and self.use_cache:
|
||||
self.cache.unprotect(self.fs_path)
|
||||
|
||||
def get_dir_cache(self, **kwargs) -> Optional["Tree"]:
|
||||
@@ -1118,7 +1149,7 @@ class Output:
|
||||
if not force and not prompt.confirm(msg.format(self.fs_path)):
|
||||
raise CollectCacheError( # noqa: B904
|
||||
"unable to fully collect used cache"
|
||||
" without cache for directory '{}'".format(self)
|
||||
f" without cache for directory '{self}'"
|
||||
)
|
||||
return None
|
||||
|
||||
@@ -1147,19 +1178,15 @@ class Output:
|
||||
|
||||
if not self.hash_info:
|
||||
msg = (
|
||||
"Output '{}'({}) is missing version info. "
|
||||
f"Output '{self}'({self.stage}) is missing version info. "
|
||||
"Cache for it will not be collected. "
|
||||
"Use `dvc repro` to get your pipeline up to date.".format(
|
||||
self, self.stage
|
||||
)
|
||||
"Use `dvc repro` to get your pipeline up to date."
|
||||
)
|
||||
if self.exists:
|
||||
msg += (
|
||||
"\n"
|
||||
"You can also use `dvc commit {stage.addressing}` "
|
||||
"to associate existing '{out}' with {stage}.".format(
|
||||
out=self, stage=self.stage
|
||||
)
|
||||
f"You can also use `dvc commit {self.stage.addressing}` "
|
||||
f"to associate existing '{self}' with {self.stage}."
|
||||
)
|
||||
logger.warning(msg)
|
||||
return {}
|
||||
@@ -1409,7 +1436,18 @@ class Output:
|
||||
|
||||
assert staging
|
||||
assert obj.hash_info
|
||||
otransfer(staging, self.cache, {obj.hash_info}, hardlink=relink, shallow=False)
|
||||
with Callback.as_tqdm_callback(
|
||||
desc=f"Adding {self} to cache",
|
||||
unit="file",
|
||||
) as cb:
|
||||
otransfer(
|
||||
staging,
|
||||
self.cache,
|
||||
{obj.hash_info},
|
||||
hardlink=relink,
|
||||
shallow=False,
|
||||
callback=cb,
|
||||
)
|
||||
|
||||
if relink:
|
||||
with CheckoutCallback(
|
||||
@@ -1506,4 +1544,5 @@ SCHEMA = {
|
||||
Output.PARAM_REMOTE: str,
|
||||
Output.PARAM_PUSH: bool,
|
||||
Output.PARAM_FILES: [DIR_FILES_SCHEMA],
|
||||
Output.PARAM_FS_CONFIG: dict,
|
||||
}
|
||||
|
||||
+125
-24
@@ -2,6 +2,7 @@ import logging
|
||||
import os
|
||||
from collections.abc import Mapping, Sequence
|
||||
from copy import deepcopy
|
||||
from itertools import product
|
||||
from typing import (
|
||||
TYPE_CHECKING,
|
||||
Any,
|
||||
@@ -51,6 +52,7 @@ VARS_KWD = "vars"
|
||||
WDIR_KWD = "wdir"
|
||||
PARAMS_KWD = "params"
|
||||
FOREACH_KWD = "foreach"
|
||||
MATRIX_KWD = "matrix"
|
||||
DO_KWD = "do"
|
||||
|
||||
DEFAULT_PARAMS_FILE = "params.yaml"
|
||||
@@ -105,7 +107,7 @@ def is_map_or_seq(data: Any) -> bool:
|
||||
return not isinstance(data, str) and _is_map_or_seq(data)
|
||||
|
||||
|
||||
def split_foreach_name(name: str) -> Tuple[str, Optional[str]]:
|
||||
def split_group_name(name: str) -> Tuple[str, Optional[str]]:
|
||||
group, *keys = name.rsplit(JOIN, maxsplit=1)
|
||||
return group, first(keys)
|
||||
|
||||
@@ -120,13 +122,15 @@ def check_interpolations(data: "DictStrAny", where: str, path: str):
|
||||
return recurse(func)(data)
|
||||
|
||||
|
||||
Definition = Union["ForeachDefinition", "EntryDefinition"]
|
||||
Definition = Union["ForeachDefinition", "EntryDefinition", "MatrixDefinition"]
|
||||
|
||||
|
||||
def make_definition(
|
||||
resolver: "DataResolver", name: str, definition: "DictStrAny", **kwargs
|
||||
) -> Definition:
|
||||
args = resolver, resolver.context, name, definition
|
||||
if MATRIX_KWD in definition:
|
||||
return MatrixDefinition(*args, **kwargs)
|
||||
if FOREACH_KWD in definition:
|
||||
return ForeachDefinition(*args, **kwargs)
|
||||
return EntryDefinition(*args, **kwargs)
|
||||
@@ -159,7 +163,8 @@ class DataResolver:
|
||||
self.tracked_vars: Dict[str, Mapping] = {}
|
||||
|
||||
stages_data = d.get(STAGES_KWD, {})
|
||||
# we wrap the definitions into ForeachDefinition and EntryDefinition,
|
||||
# we wrap the definitions into:
|
||||
# ForeachDefinition, MatrixDefinition, and EntryDefinition
|
||||
# that helps us to optimize, cache and selectively load each one of
|
||||
# them as we need, and simplify all of this DSL/parsing logic.
|
||||
self.definitions: Dict[str, Definition] = {
|
||||
@@ -168,12 +173,13 @@ class DataResolver:
|
||||
}
|
||||
|
||||
def resolve_one(self, name: str):
|
||||
group, key = split_foreach_name(name)
|
||||
group, key = split_group_name(name)
|
||||
|
||||
if not self._has_group_and_key(group, key):
|
||||
raise EntryNotFound(f"Could not find '{name}'")
|
||||
|
||||
# all of the checks for `key` not being None for `ForeachDefinition`
|
||||
# all of the checks for `key` not being None for
|
||||
# `ForeachDefinition`/`MatrixDefinition`
|
||||
# and/or `group` not existing in the `interim`, etc. should be
|
||||
# handled by the `self.has_key()` above.
|
||||
definition = self.definitions[group]
|
||||
@@ -190,7 +196,7 @@ class DataResolver:
|
||||
return {STAGES_KWD: data}
|
||||
|
||||
def has_key(self, key: str):
|
||||
return self._has_group_and_key(*split_foreach_name(key))
|
||||
return self._has_group_and_key(*split_group_name(key))
|
||||
|
||||
def _has_group_and_key(self, group: str, key: Optional[str] = None):
|
||||
try:
|
||||
@@ -198,16 +204,14 @@ class DataResolver:
|
||||
except KeyError:
|
||||
return False
|
||||
|
||||
if key:
|
||||
return isinstance(definition, ForeachDefinition) and definition.has_member(
|
||||
key
|
||||
)
|
||||
return not isinstance(definition, ForeachDefinition)
|
||||
if not isinstance(definition, (ForeachDefinition, MatrixDefinition)):
|
||||
return key is None
|
||||
return key is not None and definition.has_member(key)
|
||||
|
||||
@collecting
|
||||
def get_keys(self):
|
||||
for name, definition in self.definitions.items():
|
||||
if isinstance(definition, ForeachDefinition):
|
||||
if isinstance(definition, (ForeachDefinition, MatrixDefinition)):
|
||||
yield from definition.get_generated_names()
|
||||
continue
|
||||
yield name
|
||||
@@ -256,8 +260,9 @@ class EntryDefinition:
|
||||
name = self.name
|
||||
if not skip_checks:
|
||||
# we can check for syntax errors as we go for interpolated entries,
|
||||
# but for foreach-generated ones, once is enough, which it does
|
||||
# that itself. See `ForeachDefinition.do_definition`.
|
||||
# but for foreach and matrix generated ones, once is enough, which it does
|
||||
# that itself. See `ForeachDefinition.template`
|
||||
# and `MatrixDefinition.template`.
|
||||
check_syntax_errors(self.definition, name, self.relpath)
|
||||
|
||||
# we need to pop vars from generated/evaluated data
|
||||
@@ -331,17 +336,18 @@ class ForeachDefinition:
|
||||
self.name = name
|
||||
|
||||
assert DO_KWD in definition
|
||||
assert MATRIX_KWD not in definition
|
||||
self.foreach_data = definition[FOREACH_KWD]
|
||||
self._do_definition = definition[DO_KWD]
|
||||
self._template = definition[DO_KWD]
|
||||
|
||||
self.pair = IterationPair()
|
||||
self.where = where
|
||||
|
||||
@cached_property
|
||||
def do_definition(self):
|
||||
def template(self):
|
||||
# optimization: check for syntax errors only once for `foreach` stages
|
||||
check_syntax_errors(self._do_definition, self.name, self.relpath)
|
||||
return self._do_definition
|
||||
check_syntax_errors(self._template, self.name, self.relpath)
|
||||
return self._template
|
||||
|
||||
@cached_property
|
||||
def resolved_iterable(self):
|
||||
@@ -444,16 +450,111 @@ class ForeachDefinition:
|
||||
# i.e. quadratic complexity).
|
||||
generated = self._generate_name(key)
|
||||
entry = EntryDefinition(
|
||||
self.resolver, self.context, generated, self.do_definition
|
||||
self.resolver, self.context, generated, self.template
|
||||
)
|
||||
try:
|
||||
# optimization: skip checking for syntax errors on each foreach
|
||||
# generated stages. We do it once when accessing do_definition.
|
||||
# generated stages. We do it once when accessing template.
|
||||
return entry.resolve_stage(skip_checks=True)
|
||||
except ContextError as exc:
|
||||
format_and_raise(exc, f"stage '{generated}'", self.relpath)
|
||||
|
||||
# let mypy know that this state is unreachable as format_and_raise
|
||||
# does not return at all (it's not able to understand it for some
|
||||
# reason)
|
||||
raise AssertionError("unreachable")
|
||||
|
||||
class MatrixDefinition:
|
||||
def __init__(
|
||||
self,
|
||||
resolver: DataResolver,
|
||||
context: Context,
|
||||
name: str,
|
||||
definition: "DictStrAny",
|
||||
where: str = STAGES_KWD,
|
||||
):
|
||||
self.resolver = resolver
|
||||
self.relpath = self.resolver.relpath
|
||||
self.context = context
|
||||
self.name = name
|
||||
|
||||
assert MATRIX_KWD in definition
|
||||
assert DO_KWD not in definition
|
||||
assert FOREACH_KWD not in definition
|
||||
|
||||
self._template = definition.copy()
|
||||
self.matrix_data = self._template.pop(MATRIX_KWD)
|
||||
|
||||
self.pair = IterationPair()
|
||||
self.where = where
|
||||
|
||||
@cached_property
|
||||
def template(self) -> "DictStrAny":
|
||||
# optimization: check for syntax errors only once for `matrix` stages
|
||||
check_syntax_errors(self._template, self.name, self.relpath)
|
||||
return self._template
|
||||
|
||||
@cached_property
|
||||
def resolved_iterable(self) -> Dict[str, List]:
|
||||
return self._resolve_matrix_data()
|
||||
|
||||
def _resolve_matrix_data(self) -> Dict[str, List]:
|
||||
try:
|
||||
iterable = self.context.resolve(self.matrix_data, unwrap=False)
|
||||
except (ContextError, ParseError) as exc:
|
||||
format_and_raise(exc, f"'{self.where}.{self.name}.matrix'", self.relpath)
|
||||
return iterable
|
||||
|
||||
@cached_property
|
||||
def normalized_iterable(self) -> Dict[str, "DictStrAny"]:
|
||||
"""Convert sequence to Mapping with keys normalized."""
|
||||
iterable = self.resolved_iterable
|
||||
assert isinstance(iterable, Mapping)
|
||||
|
||||
ret: Dict[str, "DictStrAny"] = {}
|
||||
matrix = {key: enumerate(v) for key, v in iterable.items()}
|
||||
for combination in product(*matrix.values()):
|
||||
d: "DictStrAny" = {}
|
||||
fragments: List[str] = []
|
||||
for k, (i, v) in zip(matrix.keys(), combination):
|
||||
d[k] = v
|
||||
fragments.append(f"{k}{i}" if is_map_or_seq(v) else to_str(v))
|
||||
|
||||
key = "-".join(fragments)
|
||||
ret[key] = d
|
||||
return ret
|
||||
|
||||
def has_member(self, key: str) -> bool:
|
||||
return key in self.normalized_iterable
|
||||
|
||||
def get_generated_names(self) -> List[str]:
|
||||
return list(map(self._generate_name, self.normalized_iterable))
|
||||
|
||||
def _generate_name(self, key: str) -> str:
|
||||
return f"{self.name}{JOIN}{key}"
|
||||
|
||||
def resolve_all(self) -> "DictStrAny":
|
||||
return join(map(self.resolve_one, self.normalized_iterable))
|
||||
|
||||
def resolve_one(self, key: str) -> "DictStrAny":
|
||||
return self._each_iter(key)
|
||||
|
||||
def _each_iter(self, key: str) -> "DictStrAny":
|
||||
err_message = f"Could not find '{key}' in matrix group '{self.name}'"
|
||||
with reraise(KeyError, EntryNotFound(err_message)):
|
||||
value = self.normalized_iterable[key]
|
||||
|
||||
temp_dict = {self.pair.value: value}
|
||||
with self.context.set_temporarily(temp_dict, reserve=True):
|
||||
# optimization: item and key can be removed on __exit__() as they
|
||||
# are top-level values, and are not merged recursively.
|
||||
# This helps us avoid cloning context, which is slower
|
||||
# (increasing the size of the context might increase
|
||||
# the no. of items to be generated which means more cloning,
|
||||
# i.e. quadratic complexity).
|
||||
generated = self._generate_name(key)
|
||||
entry = EntryDefinition(
|
||||
self.resolver, self.context, generated, self.template
|
||||
)
|
||||
try:
|
||||
# optimization: skip checking for syntax errors on each matrix
|
||||
# generated stages. We do it once when accessing template.
|
||||
return entry.resolve_stage(skip_checks=True)
|
||||
except ContextError as exc:
|
||||
format_and_raise(exc, f"stage '{generated}'", self.relpath)
|
||||
|
||||
@@ -8,7 +8,7 @@ from pathspec.util import normalize_file
|
||||
|
||||
from dvc.utils import relpath
|
||||
|
||||
PatternInfo = namedtuple("PatternInfo", ["patterns", "file_info"])
|
||||
PatternInfo = namedtuple("PatternInfo", ["patterns", "file_info"]) # noqa: PYI024
|
||||
|
||||
|
||||
def _not_ignore(rule):
|
||||
|
||||
+33
-20
@@ -15,8 +15,6 @@ from typing import (
|
||||
|
||||
from dvc.exceptions import NotDvcRepoError, OutputNotFoundError
|
||||
from dvc.ignore import DvcIgnoreFilter
|
||||
from dvc.utils import env2bool
|
||||
from dvc.utils.fs import path_isin
|
||||
from dvc.utils.objects import cached_property
|
||||
|
||||
if TYPE_CHECKING:
|
||||
@@ -24,7 +22,6 @@ if TYPE_CHECKING:
|
||||
from dvc.fs.data import DataFileSystem
|
||||
from dvc.fs.dvc import DVCFileSystem
|
||||
from dvc.lock import LockBase
|
||||
from dvc.machine import MachineManager
|
||||
from dvc.scm import Git, NoSCM
|
||||
from dvc.stage import Stage
|
||||
from dvc.types import DictStrAny
|
||||
@@ -93,6 +90,7 @@ class Repo:
|
||||
from dvc.repo.status import status # type: ignore[misc]
|
||||
from dvc.repo.update import update # type: ignore[misc]
|
||||
|
||||
from .cache import check_missing as cache_check_missing # type: ignore[misc]
|
||||
from .data import status as data_status # type: ignore[misc]
|
||||
|
||||
ls = staticmethod(_ls)
|
||||
@@ -133,7 +131,7 @@ class Repo:
|
||||
assert root_dir
|
||||
return root_dir, dvc_dir
|
||||
|
||||
def __init__( # noqa: PLR0915
|
||||
def __init__( # noqa: PLR0915, PLR0913
|
||||
self,
|
||||
root_dir: Optional[str] = None,
|
||||
fs: Optional["FileSystem"] = None,
|
||||
@@ -144,9 +142,10 @@ class Repo:
|
||||
url: Optional[str] = None,
|
||||
repo_factory: Optional[Callable] = None,
|
||||
scm: Optional[Union["Git", "NoSCM"]] = None,
|
||||
remote: Optional[str] = None,
|
||||
remote_config: Optional["DictStrAny"] = None,
|
||||
):
|
||||
from dvc.cachemgr import CacheManager
|
||||
from dvc.config import Config
|
||||
from dvc.data_cloud import DataCloud
|
||||
from dvc.fs import GitFileSystem, LocalFileSystem, localfs
|
||||
from dvc.lock import LockNoop, make_lock
|
||||
@@ -163,6 +162,9 @@ class Repo:
|
||||
self._fs_conf = {"repo_factory": repo_factory}
|
||||
self._fs = fs or localfs
|
||||
self._scm = scm
|
||||
self._config = config
|
||||
self._remote = remote
|
||||
self._remote_config = remote_config
|
||||
self._data_index = None
|
||||
|
||||
if rev and not fs:
|
||||
@@ -182,7 +184,6 @@ class Repo:
|
||||
scm=scm,
|
||||
)
|
||||
|
||||
self.config: Config = Config(self.dvc_dir, fs=self.fs, config=config)
|
||||
self._uninitialized = uninitialized
|
||||
|
||||
# used by DVCFileSystem to determine if it should traverse subrepos
|
||||
@@ -234,6 +235,19 @@ class Repo:
|
||||
def __str__(self):
|
||||
return self.url or self.root_dir
|
||||
|
||||
@cached_property
|
||||
def config(self):
|
||||
from dvc.config import Config
|
||||
|
||||
return Config(
|
||||
self.dvc_dir,
|
||||
local_dvc_dir=self.local_dvc_dir,
|
||||
fs=self.fs,
|
||||
config=self._config,
|
||||
remote=self._remote,
|
||||
remote_config=self._remote_config,
|
||||
)
|
||||
|
||||
@cached_property
|
||||
def local_dvc_dir(self):
|
||||
from dvc.fs import GitFileSystem, LocalFileSystem
|
||||
@@ -335,16 +349,6 @@ class Repo:
|
||||
|
||||
return Experiments(self)
|
||||
|
||||
@cached_property
|
||||
def machine(self) -> Optional["MachineManager"]:
|
||||
from dvc.machine import MachineManager
|
||||
|
||||
if self.tmp_dir and (
|
||||
self.config["feature"].get("machine", False) or env2bool("DVC_TEST")
|
||||
):
|
||||
return MachineManager(self)
|
||||
return None
|
||||
|
||||
@property
|
||||
def fs(self) -> "FileSystem":
|
||||
return self._fs
|
||||
@@ -406,7 +410,7 @@ class Repo:
|
||||
|
||||
fs = fs or localfs
|
||||
root = root or os.curdir
|
||||
root_dir = fs.path.realpath(root)
|
||||
root_dir = fs.path.abspath(root)
|
||||
|
||||
if not fs.isdir(root_dir):
|
||||
raise NotDvcRepoError(f"directory '{root}' does not exist")
|
||||
@@ -450,8 +454,9 @@ class Repo:
|
||||
flist = [self.config.files["local"]]
|
||||
if tmp_dir := self.tmp_dir:
|
||||
flist.append(tmp_dir)
|
||||
if path_isin(self.cache.legacy.path, self.root_dir):
|
||||
flist.append(self.cache.legacy.path)
|
||||
|
||||
if cache_dir := self.cache.default_local_cache_dir:
|
||||
flist.append(cache_dir)
|
||||
|
||||
for file in flist:
|
||||
self.scm_context.ignore(file)
|
||||
@@ -482,7 +487,7 @@ class Repo:
|
||||
used_run_cache=None,
|
||||
revs=None,
|
||||
num=1,
|
||||
push: bool = False, # noqa: F811
|
||||
push: bool = False,
|
||||
):
|
||||
"""Get the stages related to the given target and collect
|
||||
the `info` of its outputs.
|
||||
@@ -600,12 +605,19 @@ class Repo:
|
||||
finally:
|
||||
os.umask(umask)
|
||||
|
||||
# NOTE: Some number to change the generated token if none of the
|
||||
# components were changed (useful to prevent newer dvc versions from
|
||||
# using older broken cache). Please reset this back to 0 if other parts
|
||||
# of the token components are changed.
|
||||
salt = 0
|
||||
|
||||
md5 = hashlib.md5( # noqa: S324 # nosec B324, B303
|
||||
str(
|
||||
(
|
||||
root_dir,
|
||||
getpass.getuser(),
|
||||
version_tuple[0],
|
||||
salt,
|
||||
)
|
||||
).encode()
|
||||
)
|
||||
@@ -629,6 +641,7 @@ class Repo:
|
||||
self.__dict__.pop("dvcignore", None)
|
||||
self.__dict__.pop("dvcfs", None)
|
||||
self.__dict__.pop("datafs", None)
|
||||
self.__dict__.pop("config", None)
|
||||
|
||||
def __enter__(self):
|
||||
return self
|
||||
|
||||
+1
-1
@@ -120,7 +120,7 @@ def translate_graph_error(stages: List["Stage"]) -> Iterator[None]:
|
||||
)
|
||||
except OutputDuplicationError as exc:
|
||||
raise OutputDuplicationError( # noqa: B904
|
||||
exc.output, list(set(exc.stages) - set(stages))
|
||||
exc.output, set(exc.stages) - set(stages)
|
||||
)
|
||||
|
||||
|
||||
|
||||
+12
-4
@@ -57,16 +57,17 @@ def brancher( # noqa: E302
|
||||
|
||||
from dvc.fs import LocalFileSystem
|
||||
|
||||
repo_root_parts = ()
|
||||
repo_root_parts: Tuple[str, ...] = ()
|
||||
if self.fs.path.isin(self.root_dir, self.scm.root_dir):
|
||||
repo_root_parts = self.fs.path.relparts(self.root_dir, self.scm.root_dir)
|
||||
|
||||
cwd_parts = ()
|
||||
cwd_parts: Tuple[str, ...] = ()
|
||||
if self.fs.path.isin(self.fs.path.getcwd(), self.scm.root_dir):
|
||||
cwd_parts = self.fs.path.relparts(self.fs.path.getcwd(), self.scm.root_dir)
|
||||
|
||||
saved_fs = self.fs
|
||||
saved_root = self.root_dir
|
||||
saved_dvc_dir = self.dvc_dir
|
||||
|
||||
scm = self.scm
|
||||
|
||||
@@ -101,6 +102,8 @@ def brancher( # noqa: E302
|
||||
finally:
|
||||
self.fs = saved_fs
|
||||
self.root_dir = saved_root
|
||||
self.dvc_dir = saved_dvc_dir
|
||||
self._reset() # pylint: disable=protected-access
|
||||
|
||||
|
||||
def _switch_fs(
|
||||
@@ -125,6 +128,8 @@ def _switch_fs(
|
||||
|
||||
repo.fs = fs
|
||||
repo.root_dir = root_dir
|
||||
repo.dvc_dir = fs.path.join(root_dir, repo.DVC_DIR)
|
||||
repo._reset() # pylint: disable=protected-access
|
||||
|
||||
if cwd_parts:
|
||||
cwd = repo.fs.path.join("/", *cwd_parts)
|
||||
@@ -139,19 +144,22 @@ def switch(repo: "Repo", rev: str) -> Iterator[str]:
|
||||
if rev != "workspace":
|
||||
rev = resolve_rev(repo.scm, rev)
|
||||
|
||||
repo_root_parts = ()
|
||||
repo_root_parts: Tuple[str, ...] = ()
|
||||
if repo.fs.path.isin(repo.root_dir, repo.scm.root_dir):
|
||||
repo_root_parts = repo.fs.path.relparts(repo.root_dir, repo.scm.root_dir)
|
||||
|
||||
cwd_parts = ()
|
||||
cwd_parts: Tuple[str, ...] = ()
|
||||
if repo.fs.path.isin(repo.fs.path.getcwd(), repo.scm.root_dir):
|
||||
cwd_parts = repo.fs.path.relparts(repo.fs.path.getcwd(), repo.scm.root_dir)
|
||||
|
||||
saved_fs = repo.fs
|
||||
saved_root = repo.root_dir
|
||||
saved_dvc_dir = repo.dvc_dir
|
||||
try:
|
||||
_switch_fs(repo, rev, repo_root_parts, cwd_parts)
|
||||
yield rev
|
||||
finally:
|
||||
repo.fs = saved_fs
|
||||
repo.root_dir = saved_root
|
||||
repo.dvc_dir = saved_dvc_dir
|
||||
repo._reset() # pylint: disable=protected-access
|
||||
|
||||
@@ -0,0 +1,39 @@
|
||||
import os
|
||||
|
||||
|
||||
def check_missing(repo, rev=None, max_size=None, types=None):
|
||||
from dvc_data.index import StorageKeyError
|
||||
|
||||
with repo.switch(rev or "workspace"):
|
||||
idx = repo.index.targets_view(
|
||||
None,
|
||||
max_size=max_size,
|
||||
types=types,
|
||||
)
|
||||
|
||||
index = idx.data["repo"]
|
||||
|
||||
def onerror(_entry, _exc):
|
||||
pass
|
||||
|
||||
index.onerror = onerror
|
||||
|
||||
ret = []
|
||||
for _, entry in index.iteritems():
|
||||
try:
|
||||
fs, path = index.storage_map.get_cache(entry)
|
||||
except (StorageKeyError, ValueError):
|
||||
continue
|
||||
|
||||
if not fs.exists(path):
|
||||
typ = "directory" if (entry.meta and entry.meta.isdir) else "file"
|
||||
ret.append(
|
||||
(
|
||||
typ,
|
||||
entry.hash_info.name,
|
||||
entry.hash_info.value,
|
||||
os.path.join(*entry.key),
|
||||
)
|
||||
)
|
||||
|
||||
return ret
|
||||
+10
-14
@@ -51,20 +51,16 @@ def _build_out_changes(index, changes):
|
||||
out_keys.append(key)
|
||||
|
||||
out_changes = {}
|
||||
for objects in changes.values():
|
||||
for change in objects:
|
||||
for out_key in out_keys:
|
||||
if (
|
||||
len(out_key) > len(change.key)
|
||||
or change.key[: len(out_key)] != out_key
|
||||
):
|
||||
continue
|
||||
for key, change in changes.items():
|
||||
for out_key in out_keys:
|
||||
if len(out_key) > len(key) or key[: len(out_key)] != out_key:
|
||||
continue
|
||||
|
||||
if change.key == out_key:
|
||||
out_changes[out_key] = change.typ
|
||||
elif not out_changes.get(out_key):
|
||||
out_changes[out_key] = MODIFY
|
||||
break
|
||||
if key == out_key:
|
||||
out_changes[out_key] = change.typ
|
||||
elif not out_changes.get(out_key):
|
||||
out_changes[out_key] = MODIFY
|
||||
break
|
||||
|
||||
return out_changes
|
||||
|
||||
@@ -85,7 +81,7 @@ def _check_can_delete(
|
||||
if cache_fs.exists(cache_path):
|
||||
continue
|
||||
|
||||
entry_paths.append(fs.path.join(path, *entry.key))
|
||||
entry_paths.append(fs.path.join(path, *(entry.key or ())))
|
||||
|
||||
if not entry_paths:
|
||||
return
|
||||
|
||||
@@ -136,10 +136,6 @@ class Experiments:
|
||||
**kwargs,
|
||||
) -> "QueueEntry":
|
||||
"""Queue a single experiment."""
|
||||
if kwargs.pop("machine", None) is not None:
|
||||
# TODO: decide how to handle queued remote execution
|
||||
raise NotImplementedError
|
||||
|
||||
return self.new(
|
||||
queue,
|
||||
**kwargs,
|
||||
@@ -214,10 +210,6 @@ class Experiments:
|
||||
)
|
||||
else:
|
||||
ui.write("Experiment results have been applied to your workspace.")
|
||||
ui.write(
|
||||
"\nTo promote an experiment to a Git branch run:\n\n"
|
||||
"\tdvc exp branch <exp> <branch>\n"
|
||||
)
|
||||
|
||||
def new(
|
||||
self,
|
||||
|
||||
@@ -1,6 +1,7 @@
|
||||
import itertools
|
||||
import logging
|
||||
import os
|
||||
from dataclasses import fields
|
||||
from datetime import datetime
|
||||
from typing import (
|
||||
TYPE_CHECKING,
|
||||
@@ -22,6 +23,7 @@ from dvc.scm import Git, SCMError, iter_revs
|
||||
from .exceptions import InvalidExpRefError
|
||||
from .refs import EXEC_BRANCH, ExpRefInfo
|
||||
from .serialize import ExpRange, ExpState, SerializableError, SerializableExp
|
||||
from .utils import describe
|
||||
|
||||
if TYPE_CHECKING:
|
||||
from dvc.repo import Repo
|
||||
@@ -152,7 +154,23 @@ def collect_queued(
|
||||
"""
|
||||
if not baseline_revs:
|
||||
return {}
|
||||
return repo.experiments.celery_queue.collect_queued_data(baseline_revs, **kwargs)
|
||||
queued_data = {}
|
||||
for rev, ranges in repo.experiments.celery_queue.collect_queued_data(
|
||||
baseline_revs, **kwargs
|
||||
).items():
|
||||
for exp_range in ranges:
|
||||
for exp_state in exp_range.revs:
|
||||
if exp_state.data:
|
||||
attrs = [f.name for f in fields(SerializableExp)]
|
||||
exp_state.data = SerializableExp(
|
||||
**{
|
||||
attr: getattr(exp_state.data, attr)
|
||||
for attr in attrs
|
||||
if attr != "metrics"
|
||||
}
|
||||
)
|
||||
queued_data[rev] = ranges
|
||||
return queued_data
|
||||
|
||||
|
||||
def collect_active(
|
||||
@@ -291,7 +309,9 @@ def collect(
|
||||
if sha_only:
|
||||
baseline_names: Dict[str, Optional[str]] = {}
|
||||
else:
|
||||
baseline_names = _describe(repo.scm, baseline_revs, refs=cached_refs)
|
||||
baseline_names = describe(
|
||||
repo.scm, baseline_revs, refs=cached_refs, logger=logger
|
||||
)
|
||||
|
||||
workspace_data = collect_rev(repo, "workspace", **kwargs)
|
||||
result: List["ExpState"] = [workspace_data]
|
||||
@@ -320,55 +340,6 @@ def collect(
|
||||
return result
|
||||
|
||||
|
||||
def _describe(
|
||||
scm: "Git",
|
||||
revs: Iterable[str],
|
||||
refs: Optional[Iterable[str]] = None,
|
||||
) -> Dict[str, Optional[str]]:
|
||||
"""Describe revisions using a tag, branch.
|
||||
|
||||
The first matching name will be returned for each rev. Names are preferred in this
|
||||
order:
|
||||
- current branch (if rev matches HEAD and HEAD is a branch)
|
||||
- tags
|
||||
- branches
|
||||
|
||||
Returns:
|
||||
Dict mapping revisions from revs to a name.
|
||||
"""
|
||||
|
||||
head_rev = scm.get_rev()
|
||||
head_ref = scm.get_ref("HEAD", follow=False)
|
||||
if head_ref and head_ref.startswith("refs/heads/"):
|
||||
head_branch = head_ref[len("refs/heads/") :]
|
||||
else:
|
||||
head_branch = None
|
||||
|
||||
tags = {}
|
||||
branches = {}
|
||||
ref_it = iter(refs) if refs else scm.iter_refs()
|
||||
for ref in ref_it:
|
||||
is_tag = ref.startswith("refs/tags/")
|
||||
is_branch = ref.startswith("refs/heads/")
|
||||
if not (is_tag or is_branch):
|
||||
continue
|
||||
rev = scm.get_ref(ref)
|
||||
if not rev:
|
||||
logger.debug("unresolved ref %s", ref)
|
||||
continue
|
||||
if is_tag and rev not in tags:
|
||||
tags[rev] = ref[len("refs/tags/") :]
|
||||
if is_branch and rev not in branches:
|
||||
branches[rev] = ref[len("refs/heads/") :]
|
||||
names: Dict[str, Optional[str]] = {}
|
||||
for rev in revs:
|
||||
if rev == head_rev and head_branch:
|
||||
names[rev] = head_branch
|
||||
else:
|
||||
names[rev] = tags.get(rev) or branches.get(rev)
|
||||
return names
|
||||
|
||||
|
||||
def _sorted_ranges(exp_ranges: Iterable["ExpRange"]) -> List["ExpRange"]:
|
||||
"""Return list of ExpRange sorted by (timestamp, rev)."""
|
||||
|
||||
|
||||
@@ -129,7 +129,6 @@ class BaseExecutor(ABC):
|
||||
|
||||
PACKED_ARGS_FILE = "repro.dat"
|
||||
WARN_UNTRACKED = False
|
||||
QUIET = False
|
||||
INFOFILE_EXT = ".run"
|
||||
DEFAULT_LOCATION: str = "workspace"
|
||||
|
||||
@@ -255,15 +254,6 @@ class BaseExecutor(ABC):
|
||||
**kwargs,
|
||||
)
|
||||
|
||||
@classmethod
|
||||
def _get_stage_files(cls, stages: List["Stage"]) -> List[str]:
|
||||
from dvc.stage.utils import _get_stage_files
|
||||
|
||||
ret: List[str] = []
|
||||
for stage in stages:
|
||||
ret.extend(_get_stage_files(stage))
|
||||
return ret
|
||||
|
||||
@classmethod
|
||||
def _get_top_level_paths(cls, repo: "Repo") -> List["str"]:
|
||||
return list(
|
||||
@@ -519,10 +509,8 @@ class BaseExecutor(ABC):
|
||||
recursive=kwargs.get("recursive", False),
|
||||
)
|
||||
|
||||
kwargs["repro_fn"] = cls._repro_and_track
|
||||
stages = dvc.reproduce(*args, **kwargs)
|
||||
if paths := cls._get_stage_files(stages):
|
||||
logger.debug("Staging stage-related files: %s", paths)
|
||||
dvc.scm_context.add(paths)
|
||||
if paths := cls._get_top_level_paths(dvc):
|
||||
logger.debug("Staging top-level files: %s", paths)
|
||||
dvc.scm_context.add(paths)
|
||||
@@ -547,6 +535,17 @@ class BaseExecutor(ABC):
|
||||
# multiprocessing calls
|
||||
return ExecutorResult(exp_hash, exp_ref, repro_force)
|
||||
|
||||
@staticmethod
|
||||
def _repro_and_track(stage: "Stage", **kwargs) -> Optional["Stage"]:
|
||||
from dvc.repo.reproduce import _reproduce_stage
|
||||
from dvc.stage.utils import _get_stage_files
|
||||
|
||||
ret = _reproduce_stage(stage, **kwargs)
|
||||
if not kwargs.get("dry") and (paths := _get_stage_files(stage)):
|
||||
logger.debug("Staging stage-related files: %s", paths)
|
||||
stage.repo.scm_context.add(paths)
|
||||
return ret
|
||||
|
||||
@classmethod
|
||||
def _repro_commit(
|
||||
cls,
|
||||
@@ -602,12 +601,11 @@ class BaseExecutor(ABC):
|
||||
info.status = TaskStatus.RUNNING
|
||||
if infofile is not None:
|
||||
info.dump_json(infofile)
|
||||
if cls.QUIET:
|
||||
dvc.scm_context.quiet = cls.QUIET
|
||||
dvc.scm_context.quiet = True
|
||||
old_cwd = os.getcwd()
|
||||
|
||||
for path in copy_paths or []:
|
||||
cls._copy_path(os.path.realpath(path), os.path.join(dvc.root_dir, path))
|
||||
cls._copy_path(os.path.abspath(path), os.path.join(dvc.root_dir, path))
|
||||
|
||||
if info.wdir:
|
||||
os.chdir(os.path.join(dvc.scm.root_dir, info.wdir))
|
||||
|
||||
@@ -65,7 +65,6 @@ class TempDirExecutor(BaseLocalExecutor):
|
||||
# debugging user code), and suppress other DVC hints (like `git add`
|
||||
# suggestions) that are not applicable outside of workspace runs
|
||||
WARN_UNTRACKED = True
|
||||
QUIET = True
|
||||
DEFAULT_LOCATION = "tempdir"
|
||||
|
||||
@retry(180, errors=LockError, timeout=1)
|
||||
|
||||
@@ -1,292 +0,0 @@
|
||||
import logging
|
||||
import os
|
||||
import posixpath
|
||||
import sys
|
||||
from contextlib import contextmanager
|
||||
from typing import TYPE_CHECKING, Callable, Iterable, List, Optional
|
||||
|
||||
from dvc_ssh import SSHFileSystem
|
||||
from funcy import first
|
||||
|
||||
from dvc.repo.experiments.refs import (
|
||||
EXEC_BASELINE,
|
||||
EXEC_BRANCH,
|
||||
EXEC_HEAD,
|
||||
EXEC_MERGE,
|
||||
EXEC_NAMESPACE,
|
||||
)
|
||||
|
||||
from .base import BaseExecutor, ExecutorInfo, ExecutorResult, TaskStatus
|
||||
|
||||
if TYPE_CHECKING:
|
||||
from queue import Queue
|
||||
|
||||
from dvc.repo import Repo
|
||||
from dvc.repo.experiments.refs import ExpRefInfo
|
||||
from dvc.repo.experiments.stash import ExpStashEntry
|
||||
from dvc.scm import Git
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
@contextmanager
|
||||
def _sshfs(fs_factory, **kwargs):
|
||||
if fs_factory:
|
||||
with fs_factory() as fs:
|
||||
yield fs
|
||||
return
|
||||
yield SSHFileSystem(**kwargs)
|
||||
|
||||
|
||||
class SSHExecutor(BaseExecutor):
|
||||
"""SSH experiment executor."""
|
||||
|
||||
WARN_UNTRACKED = True
|
||||
QUIET = True
|
||||
SETUP_SCRIPT_FILENAME = "exec-setup.sh"
|
||||
|
||||
def __init__(
|
||||
self,
|
||||
*args,
|
||||
host: Optional[str] = None,
|
||||
port: Optional[int] = None,
|
||||
username: Optional[str] = None,
|
||||
fs_factory: Optional[Callable] = None,
|
||||
setup_script: Optional[str] = None,
|
||||
**kwargs,
|
||||
):
|
||||
assert host
|
||||
|
||||
super().__init__(*args, **kwargs)
|
||||
self.host: str = host
|
||||
self.port = port
|
||||
self.username = username
|
||||
self._fs_factory = fs_factory
|
||||
self._repo_abspath = ""
|
||||
self._setup_script = setup_script
|
||||
|
||||
@classmethod
|
||||
def gen_dirname(cls, name: Optional[str] = None):
|
||||
from shortuuid import uuid
|
||||
|
||||
return "-".join([name or "dvc-exp", "executor", uuid()])
|
||||
|
||||
@classmethod
|
||||
def from_stash_entry(
|
||||
cls,
|
||||
repo: "Repo",
|
||||
entry: "ExpStashEntry",
|
||||
**kwargs,
|
||||
):
|
||||
machine_name: Optional[str] = kwargs.pop("machine_name", None)
|
||||
assert repo.machine
|
||||
executor = cls._from_stash_entry(
|
||||
repo,
|
||||
entry,
|
||||
cls.gen_dirname(entry.name),
|
||||
location=machine_name,
|
||||
**repo.machine.get_executor_kwargs(machine_name),
|
||||
setup_script=repo.machine.get_setup_script(machine_name),
|
||||
)
|
||||
logger.debug("Init SSH executor for host '%s'", executor.host)
|
||||
return executor
|
||||
|
||||
def sshfs(self):
|
||||
return _sshfs(self._fs_factory, host=self.host, port=self.port)
|
||||
|
||||
@property
|
||||
def git_url(self) -> str:
|
||||
user = f"{self.username}@" if self.username else ""
|
||||
port = f":{self.port}" if self.port is not None else ""
|
||||
path = f"{self.root_dir}" if self.root_dir else ""
|
||||
if path and not posixpath.isabs(path):
|
||||
path = f"/~/{path}"
|
||||
return f"ssh://{user}{self.host}{port}{path}"
|
||||
|
||||
@property
|
||||
def abs_url(self) -> str:
|
||||
assert self._repo_abspath
|
||||
user = f"{self.username}@" if self.username else ""
|
||||
port = f":{self.port}" if self.port is not None else ""
|
||||
return f"ssh://{user}{self.host}{port}{self._repo_abspath}"
|
||||
|
||||
@staticmethod
|
||||
def _git_client_args(fs):
|
||||
return {
|
||||
"password": fs.fs_args.get("password"),
|
||||
"key_filename": first(fs.fs_args.get("client_keys", [])),
|
||||
}
|
||||
|
||||
def init_git(
|
||||
self,
|
||||
repo: "Repo", # noqa: ARG002
|
||||
scm: "Git",
|
||||
stash_rev: str,
|
||||
entry: "ExpStashEntry",
|
||||
infofile: Optional[str],
|
||||
branch: Optional[str] = None,
|
||||
):
|
||||
from dvc.repo.experiments.utils import push_refspec
|
||||
|
||||
self.status = TaskStatus.PREPARING
|
||||
if infofile:
|
||||
self.info.dump_json(infofile)
|
||||
|
||||
with self.sshfs() as fs:
|
||||
fs.makedirs(self.root_dir)
|
||||
self._ssh_cmd(fs, "git init .")
|
||||
self._ssh_cmd(fs, "git config user.name dvc-exp")
|
||||
self._ssh_cmd(fs, "git config user.email [email protected]")
|
||||
|
||||
result = self._ssh_cmd(fs, "pwd")
|
||||
path = result.stdout.strip()
|
||||
self._repo_abspath = path
|
||||
|
||||
# TODO: support multiple client key retries in git backends
|
||||
# (see https://github.com/iterative/dvc/issues/6508)
|
||||
kwargs = self._git_client_args(fs)
|
||||
|
||||
ref_dict = {
|
||||
EXEC_HEAD: entry.head_rev,
|
||||
EXEC_MERGE: stash_rev,
|
||||
EXEC_BASELINE: entry.baseline_rev,
|
||||
}
|
||||
with self.set_temp_refs(scm, ref_dict):
|
||||
exec_namespace = f"{EXEC_NAMESPACE}/"
|
||||
refspec = [(exec_namespace, exec_namespace)]
|
||||
push_refspec(scm, self.git_url, refspec, **kwargs)
|
||||
|
||||
if branch:
|
||||
push_refspec(scm, self.git_url, [(branch, branch)], **kwargs)
|
||||
self._ssh_cmd(fs, f"git symbolic-ref {EXEC_BRANCH} {branch}")
|
||||
else:
|
||||
self._ssh_cmd(fs, f"git symbolic-ref -d {EXEC_BRANCH}", check=False)
|
||||
|
||||
# checkout EXEC_HEAD and apply EXEC_MERGE on top of it without
|
||||
# committing
|
||||
head = EXEC_BRANCH if branch else EXEC_HEAD
|
||||
self._ssh_cmd(fs, f"git checkout {head}")
|
||||
merge_rev = scm.get_ref(EXEC_MERGE)
|
||||
self._ssh_cmd(fs, f"git stash apply {merge_rev}")
|
||||
|
||||
if self._setup_script:
|
||||
self._init_setup_script(fs)
|
||||
|
||||
@classmethod
|
||||
def _setup_script_path(cls, dvc_dir: str):
|
||||
return posixpath.join(
|
||||
dvc_dir,
|
||||
"tmp",
|
||||
cls.SETUP_SCRIPT_FILENAME,
|
||||
)
|
||||
|
||||
def _init_setup_script(self, fs: "SSHFileSystem"):
|
||||
assert self._repo_abspath
|
||||
script_path = self._setup_script_path(
|
||||
posixpath.join(self._repo_abspath, self.dvc_dir)
|
||||
)
|
||||
assert self._setup_script
|
||||
fs.put_file(self._setup_script, script_path)
|
||||
|
||||
def _ssh_cmd(self, sshfs, cmd, chdir=None, **kwargs):
|
||||
working_dir = chdir or self.root_dir
|
||||
return sshfs.fs.execute(f"cd {working_dir};{cmd}", **kwargs)
|
||||
|
||||
def init_cache(self, repo: "Repo", rev: str, run_cache: bool = True):
|
||||
from dvc.repo.push import push
|
||||
|
||||
with self.get_odb() as odb:
|
||||
push(
|
||||
repo,
|
||||
revs=[rev],
|
||||
run_cache=run_cache,
|
||||
odb=odb,
|
||||
include_imports=True,
|
||||
)
|
||||
|
||||
def collect_cache(
|
||||
self, repo: "Repo", exp_ref: "ExpRefInfo", run_cache: bool = True
|
||||
):
|
||||
"""Collect DVC cache."""
|
||||
from dvc.repo.experiments.pull import _pull_cache
|
||||
|
||||
_pull_cache(repo, exp_ref, run_cache=run_cache)
|
||||
|
||||
@contextmanager
|
||||
def get_odb(self):
|
||||
from dvc.cachemgr import CacheManager, get_odb
|
||||
|
||||
cache_path = posixpath.join(
|
||||
self._repo_abspath,
|
||||
self.dvc_dir,
|
||||
CacheManager.CACHE_DIR,
|
||||
)
|
||||
|
||||
with self.sshfs() as fs:
|
||||
yield get_odb(fs, cache_path, **fs.config)
|
||||
|
||||
def fetch_exps(self, *args, **kwargs) -> Iterable[str]:
|
||||
with self.sshfs() as fs:
|
||||
kwargs.update(self._git_client_args(fs))
|
||||
return super().fetch_exps(*args, **kwargs)
|
||||
|
||||
@classmethod
|
||||
def reproduce(
|
||||
cls,
|
||||
info: "ExecutorInfo",
|
||||
rev: str, # noqa: ARG003
|
||||
queue: Optional["Queue"] = None, # noqa: ARG003
|
||||
infofile: Optional[str] = None,
|
||||
log_errors: bool = True,
|
||||
log_level: Optional[int] = None,
|
||||
copy_paths: Optional[List[str]] = None, # noqa: ARG003
|
||||
message: Optional[str] = None, # noqa: ARG003
|
||||
**kwargs,
|
||||
) -> "ExecutorResult":
|
||||
"""Reproduce an experiment on a remote machine over SSH.
|
||||
|
||||
Internally uses 'dvc exp exec-run' over SSH.
|
||||
"""
|
||||
import json
|
||||
import time
|
||||
from tempfile import TemporaryFile
|
||||
|
||||
from asyncssh import ProcessError
|
||||
|
||||
fs_factory: Optional[Callable] = kwargs.pop("fs_factory", None)
|
||||
if log_errors and log_level is not None:
|
||||
cls._set_log_level(log_level)
|
||||
|
||||
with _sshfs(fs_factory) as fs:
|
||||
while not fs.exists("/var/log/dvc-machine-init.log"):
|
||||
logger.info("Waiting for dvc-machine startup script to complete...")
|
||||
time.sleep(5)
|
||||
logger.info("Reproducing experiment on '%s'", fs.fs_args.get("host"))
|
||||
with TemporaryFile(mode="w+", encoding="utf-8") as fobj:
|
||||
json.dump(info.asdict(), fobj)
|
||||
fobj.seek(0)
|
||||
fs.put_file(fobj, infofile)
|
||||
cmd = ["source ~/.profile"]
|
||||
script_path = cls._setup_script_path(info.dvc_dir)
|
||||
if fs.exists(posixpath.join(info.root_dir, script_path)):
|
||||
cmd.extend([f"pushd {info.root_dir}", f"source {script_path}", "popd"])
|
||||
exec_cmd = f"dvc exp exec-run --infofile {infofile}"
|
||||
if log_level is not None:
|
||||
if log_level <= logging.TRACE: # type: ignore[attr-defined]
|
||||
exec_cmd += " -vv"
|
||||
elif log_level <= logging.DEBUG:
|
||||
exec_cmd += " -v"
|
||||
cmd.append(exec_cmd)
|
||||
try:
|
||||
sys.stdout.flush()
|
||||
sys.stderr.flush()
|
||||
stdout = os.dup(sys.stdout.fileno())
|
||||
stderr = os.dup(sys.stderr.fileno())
|
||||
fs.fs.execute("; ".join(cmd), stdout=stdout, stderr=stderr)
|
||||
with fs.open(infofile) as fobj:
|
||||
result_info = ExecutorInfo.from_dict(json.load(fobj))
|
||||
if result_info.result_hash:
|
||||
return result_info.result
|
||||
except ProcessError:
|
||||
pass
|
||||
return ExecutorResult(None, None, False)
|
||||
@@ -31,23 +31,15 @@ def ls(
|
||||
rev = [rev]
|
||||
revs = iter_revs(repo.scm, rev, num)
|
||||
rev_set = set(revs.keys())
|
||||
|
||||
ref_info_dict = exp_refs_by_baseline(repo.scm, rev_set, git_remote)
|
||||
|
||||
tags = repo.scm.describe(ref_info_dict.keys())
|
||||
remained = {baseline for baseline, tag in tags.items() if tag is None}
|
||||
base = "refs/heads"
|
||||
ref_heads = repo.scm.describe(remained, base=base)
|
||||
|
||||
results = defaultdict(list)
|
||||
for baseline in ref_info_dict:
|
||||
name = baseline
|
||||
if tags[baseline] or ref_heads[baseline]:
|
||||
name = tags[baseline] or ref_heads[baseline]
|
||||
for info in ref_info_dict[baseline]:
|
||||
if git_remote:
|
||||
exp_rev = None
|
||||
else:
|
||||
exp_rev = repo.scm.get_ref(str(info))
|
||||
results[name].append((info.name, exp_rev))
|
||||
results[baseline].append((info.name, exp_rev))
|
||||
|
||||
return results
|
||||
|
||||
@@ -21,7 +21,7 @@ from dvc_studio_client.post_live_metrics import get_studio_config
|
||||
from funcy import retry
|
||||
|
||||
from dvc.dependency import ParamsDependency
|
||||
from dvc.env import DVC_EXP_BASELINE_REV, DVC_EXP_NAME
|
||||
from dvc.env import DVC_EXP_BASELINE_REV, DVC_EXP_NAME, DVC_ROOT
|
||||
from dvc.lock import LockError
|
||||
from dvc.repo.experiments.exceptions import ExperimentExistsError
|
||||
from dvc.repo.experiments.executor.base import BaseExecutor
|
||||
@@ -348,6 +348,9 @@ class BaseStashQueue(ABC):
|
||||
if not name:
|
||||
name = get_random_exp_name(self.scm, baseline_rev)
|
||||
run_env[DVC_EXP_NAME] = name
|
||||
# Override DVC_ROOT env var to point to the parent DVC repo
|
||||
# root (and not an executor tempdir root)
|
||||
run_env[DVC_ROOT] = self.repo.root_dir
|
||||
|
||||
# save studio config to read later by dvc and dvclive
|
||||
studio_config = get_studio_config(
|
||||
@@ -476,13 +479,17 @@ class BaseStashQueue(ABC):
|
||||
hydra_output_file = ParamsDependency.DEFAULT_PARAMS_FILE
|
||||
for path, overrides in params.items():
|
||||
if hydra_enabled and path == hydra_output_file:
|
||||
config_dir = os.path.join(
|
||||
self.repo.root_dir, hydra_config.get("config_dir", "conf")
|
||||
)
|
||||
if (config_module := hydra_config.get("config_module")) is None:
|
||||
config_dir = os.path.join(
|
||||
self.repo.root_dir, hydra_config.get("config_dir", "conf")
|
||||
)
|
||||
else:
|
||||
config_dir = None
|
||||
config_name = hydra_config.get("config_name", "config")
|
||||
compose_and_dump(
|
||||
path,
|
||||
config_dir,
|
||||
config_module,
|
||||
config_name,
|
||||
overrides,
|
||||
)
|
||||
|
||||
@@ -177,26 +177,31 @@ def _build_rows(
|
||||
)
|
||||
|
||||
|
||||
def _sort_column(
|
||||
def _sort_column( # noqa: C901
|
||||
sort_by: str,
|
||||
metric_names: Mapping[str, Iterable[str]],
|
||||
param_names: Mapping[str, Iterable[str]],
|
||||
) -> Tuple[str, str, str]:
|
||||
path, _, sort_name = sort_by.rpartition(":")
|
||||
sep = ":"
|
||||
parts = sort_by.split(sep)
|
||||
matches: Set[Tuple[str, str, str]] = set()
|
||||
|
||||
if path:
|
||||
for split_num in range(len(parts)):
|
||||
path = sep.join(parts[:split_num])
|
||||
sort_name = sep.join(parts[split_num:])
|
||||
if not path: # handles ':metric_name' case
|
||||
sort_by = sort_name
|
||||
if path in metric_names and sort_name in metric_names[path]:
|
||||
matches.add((path, sort_name, "metrics"))
|
||||
if path in param_names and sort_name in param_names[path]:
|
||||
matches.add((path, sort_name, "params"))
|
||||
else:
|
||||
if not matches:
|
||||
for path in metric_names:
|
||||
if sort_name in metric_names[path]:
|
||||
matches.add((path, sort_name, "metrics"))
|
||||
if sort_by in metric_names[path]:
|
||||
matches.add((path, sort_by, "metrics"))
|
||||
for path in param_names:
|
||||
if sort_name in param_names[path]:
|
||||
matches.add((path, sort_name, "params"))
|
||||
if sort_by in param_names[path]:
|
||||
matches.add((path, sort_by, "params"))
|
||||
|
||||
if len(matches) == 1:
|
||||
return matches.pop()
|
||||
@@ -238,19 +243,16 @@ def _exp_range_rows(
|
||||
is_base: bool = False,
|
||||
**kwargs,
|
||||
) -> Iterator[Tuple["CellT", ...]]:
|
||||
for i, exp in enumerate(exp_range.revs):
|
||||
from funcy import first
|
||||
|
||||
if len(exp_range.revs) > 1:
|
||||
logger.debug("Returning tip commit for legacy checkpoint exp")
|
||||
exp = first(exp_range.revs)
|
||||
if exp:
|
||||
row: Dict[str, "CellT"] = {k: fill_value for k in all_headers}
|
||||
row["Experiment"] = exp.name or ""
|
||||
row["rev"] = exp.rev[:7] if Git.is_sha(exp.rev) else exp.rev
|
||||
if len(exp_range.revs) > 1:
|
||||
if i == 0:
|
||||
row["typ"] = "checkpoint_tip"
|
||||
elif i == len(exp_range.revs) - 1:
|
||||
row["typ"] = "checkpoint_base"
|
||||
else:
|
||||
row["typ"] = "checkpoint_commit"
|
||||
else:
|
||||
row["typ"] = "branch_base" if is_base else "branch_commit"
|
||||
row["typ"] = "branch_base" if is_base else "branch_commit"
|
||||
row["parent"] = ""
|
||||
if exp_range.executor:
|
||||
row["State"] = exp_range.executor.state.capitalize()
|
||||
|
||||
File diff suppressed because one or more lines are too long
+29
-7
@@ -9,6 +9,14 @@ from . import locked
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
def _make_index_onerror(onerror, rev):
|
||||
def _onerror(entry, exc):
|
||||
if onerror:
|
||||
return onerror(rev, entry, exc)
|
||||
|
||||
return _onerror
|
||||
|
||||
|
||||
def _collect_indexes( # noqa: PLR0913
|
||||
repo,
|
||||
targets=None,
|
||||
@@ -21,19 +29,26 @@ def _collect_indexes( # noqa: PLR0913
|
||||
revs=None,
|
||||
max_size=None,
|
||||
types=None,
|
||||
config=None,
|
||||
onerror=None,
|
||||
):
|
||||
indexes = {}
|
||||
collection_exc = None
|
||||
|
||||
config = config or {}
|
||||
if remote:
|
||||
core = config.get("core") or {}
|
||||
core["remote"] = remote
|
||||
config["core"] = core
|
||||
|
||||
for rev in repo.brancher(
|
||||
revs=revs,
|
||||
all_branches=all_branches,
|
||||
all_tags=all_tags,
|
||||
all_commits=all_commits,
|
||||
):
|
||||
saved_remote = repo.config["core"].get("remote")
|
||||
try:
|
||||
if remote:
|
||||
repo.config["core"]["remote"] = remote
|
||||
repo.config.merge(config)
|
||||
|
||||
idx = repo.index.targets_view(
|
||||
targets,
|
||||
@@ -42,13 +57,16 @@ def _collect_indexes( # noqa: PLR0913
|
||||
max_size=max_size,
|
||||
types=types,
|
||||
)
|
||||
indexes[idx.data_tree.hash_info.value] = idx.data["repo"]
|
||||
|
||||
data = idx.data["repo"]
|
||||
data.onerror = _make_index_onerror(onerror, rev)
|
||||
|
||||
indexes[idx.data_tree.hash_info.value] = data
|
||||
except Exception as exc: # pylint: disable=broad-except
|
||||
if onerror:
|
||||
onerror(rev, None, exc)
|
||||
collection_exc = exc
|
||||
logger.exception("failed to collect '%s'", rev or "workspace")
|
||||
finally:
|
||||
if remote:
|
||||
repo.config["core"]["remote"] = saved_remote
|
||||
|
||||
if not indexes and collection_exc:
|
||||
raise collection_exc
|
||||
@@ -71,6 +89,8 @@ def fetch( # noqa: C901, PLR0913
|
||||
revs=None,
|
||||
max_size=None,
|
||||
types=None,
|
||||
config=None,
|
||||
onerror=None,
|
||||
) -> int:
|
||||
"""Download data items from a cloud and imported repositories
|
||||
|
||||
@@ -114,6 +134,8 @@ def fetch( # noqa: C901, PLR0913
|
||||
revs=revs,
|
||||
max_size=max_size,
|
||||
types=types,
|
||||
config=config,
|
||||
onerror=onerror,
|
||||
)
|
||||
|
||||
cache_key = ("fetch", tokenize(sorted(indexes.keys())))
|
||||
|
||||
+20
-13
@@ -19,10 +19,19 @@ class GetDVCFileError(DvcException):
|
||||
)
|
||||
|
||||
|
||||
def get(url, path, out=None, rev=None, jobs=None, force=False, config=None):
|
||||
def get(
|
||||
url,
|
||||
path,
|
||||
out=None,
|
||||
rev=None,
|
||||
jobs=None,
|
||||
force=False,
|
||||
config=None,
|
||||
remote=None,
|
||||
remote_config=None,
|
||||
):
|
||||
from dvc.config import Config
|
||||
from dvc.dvcfile import is_valid_filename
|
||||
from dvc.fs.callbacks import Callback
|
||||
from dvc.repo import Repo
|
||||
|
||||
out = resolve_output(path, out, force=force)
|
||||
@@ -39,7 +48,10 @@ def get(url, path, out=None, rev=None, jobs=None, force=False, config=None):
|
||||
subrepos=True,
|
||||
uninitialized=True,
|
||||
config=config,
|
||||
remote=remote,
|
||||
remote_config=remote_config,
|
||||
) as repo:
|
||||
from dvc.fs import download
|
||||
from dvc.fs.data import DataFileSystem
|
||||
|
||||
fs: Union[DataFileSystem, "DVCFileSystem"]
|
||||
@@ -49,14 +61,9 @@ def get(url, path, out=None, rev=None, jobs=None, force=False, config=None):
|
||||
else:
|
||||
fs = repo.dvcfs
|
||||
fs_path = fs.from_os_path(path)
|
||||
|
||||
with Callback.as_tqdm_callback(
|
||||
desc=f"Downloading {fs.path.name(path)}",
|
||||
unit="files",
|
||||
) as cb:
|
||||
fs.get(
|
||||
fs_path,
|
||||
os.path.abspath(out),
|
||||
batch_size=jobs,
|
||||
callback=cb,
|
||||
)
|
||||
download(
|
||||
fs,
|
||||
fs_path,
|
||||
os.path.abspath(out),
|
||||
jobs=jobs,
|
||||
)
|
||||
|
||||
+3
-3
@@ -6,12 +6,12 @@ from dvc.fs import download, parse_external_url
|
||||
from dvc.utils import resolve_output
|
||||
|
||||
|
||||
def get_url(url, out=None, *, config=None, jobs=None, force=False):
|
||||
def get_url(url, out=None, *, fs_config=None, jobs=None, force=False):
|
||||
out = resolve_output(url, out, force=force)
|
||||
out = os.path.abspath(out)
|
||||
(out,) = output.loads_from(None, [out], use_cache=False)
|
||||
|
||||
src_fs, src_path = parse_external_url(url, config)
|
||||
src_fs, src_path = parse_external_url(url, fs_config)
|
||||
if not src_fs.exists(src_path):
|
||||
raise URLMissingError(url)
|
||||
download(src_fs, src_path, out, jobs=jobs)
|
||||
download(src_fs, src_path, out.fs_path, jobs=jobs)
|
||||
|
||||
@@ -31,6 +31,9 @@ def check_acyclic(graph: "DiGraph") -> None:
|
||||
|
||||
def get_pipeline(pipelines, node):
|
||||
found = [i for i in pipelines if i.has_node(node)]
|
||||
if not found:
|
||||
return None
|
||||
|
||||
assert len(found) == 1
|
||||
return found[0]
|
||||
|
||||
@@ -60,6 +63,9 @@ def collect_pipeline(stage: "Stage", graph: "DiGraph") -> Iterator["Stage"]:
|
||||
import networkx as nx
|
||||
|
||||
pipeline = get_pipeline(get_pipelines(graph), stage)
|
||||
if not pipeline:
|
||||
return iter([])
|
||||
|
||||
return nx.dfs_postorder_nodes(pipeline, stage)
|
||||
|
||||
|
||||
|
||||
+36
-1
@@ -1,9 +1,44 @@
|
||||
def imp(self, url, path, out=None, rev=None, config=None, **kwargs):
|
||||
def imp(
|
||||
self,
|
||||
url,
|
||||
path,
|
||||
out=None,
|
||||
rev=None,
|
||||
config=None,
|
||||
remote=None,
|
||||
remote_config=None,
|
||||
**kwargs,
|
||||
):
|
||||
erepo = {"url": url}
|
||||
if rev is not None:
|
||||
erepo["rev"] = rev
|
||||
|
||||
if remote and remote_config and isinstance(config, str):
|
||||
raise ValueError(
|
||||
"Can't specify config path together with both remote and remote_config"
|
||||
)
|
||||
|
||||
if config is not None:
|
||||
erepo["config"] = config
|
||||
|
||||
if remote is not None and remote_config is not None:
|
||||
conf = erepo.get("config") or {}
|
||||
|
||||
core = conf.get("core") or {}
|
||||
core["remote"] = remote
|
||||
|
||||
remotes = conf.get("remote") or {}
|
||||
remote_conf = remotes.get(remote) or {}
|
||||
remote_conf.update(remote_config)
|
||||
remotes[remote] = remote_conf
|
||||
|
||||
conf["core"] = core
|
||||
conf["remote"] = remotes
|
||||
|
||||
erepo["config"] = conf
|
||||
elif remote is not None:
|
||||
erepo["remote"] = remote
|
||||
elif remote_config is not None:
|
||||
erepo["remote"] = remote_config
|
||||
|
||||
return self.imp_url(path, out=out, erepo=erepo, frozen=True, **kwargs)
|
||||
|
||||
+1
-1
@@ -413,7 +413,7 @@ class Index:
|
||||
by_workspace[workspace].add(key)
|
||||
|
||||
for path in self._plot_sources:
|
||||
key = self.repo.fs.path.relparts(path, self.repo.root_dir)
|
||||
key = self.repo.fs.path.parts(path)
|
||||
by_workspace["repo"].add(key)
|
||||
|
||||
return dict(by_workspace)
|
||||
|
||||
+1
-1
@@ -37,7 +37,7 @@ def init(root_dir=os.curdir, no_scm=False, force=False, subdir=False): # noqa:
|
||||
"Cannot initialize repo with `--no-scm` and `--subdir`"
|
||||
)
|
||||
|
||||
root_dir = os.path.realpath(root_dir)
|
||||
root_dir = os.path.abspath(root_dir)
|
||||
dvc_dir = os.path.join(root_dir, Repo.DVC_DIR)
|
||||
|
||||
try:
|
||||
|
||||
+13
-2
@@ -14,6 +14,8 @@ def ls(
|
||||
recursive: Optional[bool] = None,
|
||||
dvc_only: bool = False,
|
||||
config: Optional[str] = None,
|
||||
remote: Optional[str] = None,
|
||||
remote_config: Optional[dict] = None,
|
||||
):
|
||||
"""Methods for getting files and outputs for the repo.
|
||||
|
||||
@@ -23,7 +25,9 @@ def ls(
|
||||
rev (str, optional): SHA commit, branch or tag name
|
||||
recursive (bool, optional): recursively walk the repo
|
||||
dvc_only (bool, optional): show only DVC-artifacts
|
||||
config (bool, optional): path to config file
|
||||
config (str, optional): path to config file
|
||||
remote (str, optional): remote name to set as a default remote in the repo
|
||||
remote_config (str, dict): remote config to merge with a remote in the repo
|
||||
|
||||
Returns:
|
||||
list of `entry`
|
||||
@@ -47,7 +51,13 @@ def ls(
|
||||
config_dict = None
|
||||
|
||||
with Repo.open(
|
||||
url, rev=rev, subrepos=True, uninitialized=True, config=config_dict
|
||||
url,
|
||||
rev=rev,
|
||||
subrepos=True,
|
||||
uninitialized=True,
|
||||
config=config_dict,
|
||||
remote=remote,
|
||||
remote_config=remote_config,
|
||||
) as repo:
|
||||
path = path or ""
|
||||
|
||||
@@ -99,6 +109,7 @@ def _ls(
|
||||
"isout": dvc_info.get("isout", False),
|
||||
"isdir": info["type"] == "directory",
|
||||
"isexec": info.get("isexec", False),
|
||||
"size": info.get("size"),
|
||||
}
|
||||
|
||||
return ret
|
||||
|
||||
+3
-2
@@ -2,8 +2,8 @@ from dvc.exceptions import URLMissingError
|
||||
from dvc.fs import parse_external_url
|
||||
|
||||
|
||||
def ls_url(url, *, config=None, recursive=False):
|
||||
fs, fs_path = parse_external_url(url, config=config)
|
||||
def ls_url(url, *, fs_config=None, recursive=False):
|
||||
fs, fs_path = parse_external_url(url, config=fs_config)
|
||||
try:
|
||||
info = fs.info(fs_path)
|
||||
except FileNotFoundError as exc:
|
||||
@@ -20,6 +20,7 @@ def ls_url(url, *, config=None, recursive=False):
|
||||
ls_info = {
|
||||
"path": fs.path.relpath(info["name"], fs_path),
|
||||
"isdir": info["type"] == "directory",
|
||||
"size": info.get("size"),
|
||||
}
|
||||
ret.append(ls_info)
|
||||
|
||||
|
||||
@@ -46,8 +46,8 @@ SUPPORTED_IMAGE_EXTENSIONS = ImageRenderer.EXTENSIONS
|
||||
class PlotMetricTypeError(DvcException):
|
||||
def __init__(self, file):
|
||||
super().__init__(
|
||||
"'{}' - file type error\n"
|
||||
"Only JSON, YAML, CSV and TSV formats are supported.".format(file)
|
||||
f"'{file}' - file type error\n"
|
||||
"Only JSON, YAML, CSV and TSV formats are supported."
|
||||
)
|
||||
|
||||
|
||||
@@ -212,7 +212,7 @@ class Plots:
|
||||
short_rev = "workspace"
|
||||
if rev := getattr(self.repo.fs, "rev", None):
|
||||
short_rev = rev[:7]
|
||||
_resolve_data_sources(data, short_rev, cache_remote_stream=True)
|
||||
_resolve_data_sources(data, short_rev, cache=True)
|
||||
result.update(data)
|
||||
|
||||
errored = errored_revisions(result)
|
||||
@@ -281,9 +281,7 @@ def _is_plot(out: "Output") -> bool:
|
||||
return bool(out.plot)
|
||||
|
||||
|
||||
def _resolve_data_sources(
|
||||
plots_data: Dict, rev: str, cache_remote_stream: bool = False
|
||||
):
|
||||
def _resolve_data_sources(plots_data: Dict, rev: str, cache: bool = False):
|
||||
from dvc.progress import Tqdm
|
||||
|
||||
values = list(plots_data.values())
|
||||
@@ -298,7 +296,7 @@ def _resolve_data_sources(
|
||||
def resolve(value):
|
||||
data_source = value.pop("data_source")
|
||||
assert callable(data_source)
|
||||
value.update(data_source(cache_remote_stream=cache_remote_stream))
|
||||
value.update(data_source(cache=cache))
|
||||
|
||||
if not to_resolve:
|
||||
return
|
||||
@@ -448,6 +446,7 @@ def _resolve_definitions(
|
||||
definitions: "DictStrAny",
|
||||
onerror: Optional[Callable[[Any], Any]] = None,
|
||||
):
|
||||
config_path = os.fspath(config_path)
|
||||
config_dir = fs.path.dirname(config_path)
|
||||
result: Dict[str, Dict] = {}
|
||||
for plot_id, plot_props in definitions.items():
|
||||
@@ -483,7 +482,7 @@ def _collect_pipeline_files(repo, targets: List[str], props, onerror=None):
|
||||
if isinstance(elem, str):
|
||||
dvcfile_defs_dict[elem] = None
|
||||
else:
|
||||
k, v = list(elem.items())[0]
|
||||
k, v = next(iter(elem.items()))
|
||||
dvcfile_defs_dict[k] = v
|
||||
|
||||
resolved = _resolve_definitions(
|
||||
|
||||
+11
-3
@@ -37,11 +37,19 @@ StageSet = Set["Stage"]
|
||||
|
||||
|
||||
def _collect_with_deps(stages: StageList, graph: "DiGraph") -> StageSet:
|
||||
from dvc.exceptions import StageNotFoundError
|
||||
from dvc.repo.graph import collect_pipeline
|
||||
|
||||
res: StageSet = set()
|
||||
for stage in stages:
|
||||
res.update(collect_pipeline(stage, graph=graph))
|
||||
pl = list(collect_pipeline(stage, graph=graph))
|
||||
if not pl:
|
||||
raise StageNotFoundError(
|
||||
f"Stage {stage} is not found in the project. "
|
||||
"Check that there are no symlinks in the parents "
|
||||
"leading up to it within the project."
|
||||
)
|
||||
res.update(pl)
|
||||
return res
|
||||
|
||||
|
||||
@@ -211,7 +219,7 @@ class StageLoad:
|
||||
self, path: Optional[str] = None, name: Optional[str] = None
|
||||
) -> str:
|
||||
if path:
|
||||
return self.repo.fs.path.realpath(path)
|
||||
return self.repo.fs.path.abspath(path)
|
||||
|
||||
path = PROJECT_FILE
|
||||
logger.debug("Assuming '%s' to be a stage inside '%s'", name, path)
|
||||
@@ -235,7 +243,7 @@ class StageLoad:
|
||||
) -> Iterable[str]:
|
||||
if not name:
|
||||
return stages.keys()
|
||||
if accept_group and stages.is_foreach_generated(name):
|
||||
if accept_group and stages.is_foreach_or_matrix_generated(name):
|
||||
return self._get_group_keys(stages, name)
|
||||
if glob:
|
||||
return fnmatch.filter(stages.keys(), name)
|
||||
|
||||
+1
-1
@@ -14,7 +14,7 @@ def build_outs_trie(stages):
|
||||
# Check for dup outs
|
||||
if out_key in outs:
|
||||
dup_stages = [stage, outs[out_key].stage]
|
||||
raise OutputDuplicationError(str(out), dup_stages)
|
||||
raise OutputDuplicationError(str(out), set(dup_stages))
|
||||
|
||||
# Check for overlapping outs
|
||||
if outs.has_subtrie(out_key):
|
||||
|
||||
@@ -166,7 +166,7 @@ def push_worktree(
|
||||
latest_only=remote_obj.worktree,
|
||||
jobs=jobs,
|
||||
)
|
||||
pushed += sum(len(changes) for changes in diff.changes.values())
|
||||
pushed += len(diff.files_create)
|
||||
except VersioningNotSupported:
|
||||
logger.exception("")
|
||||
raise DvcException(
|
||||
@@ -427,7 +427,7 @@ def _get_update_diff_index(
|
||||
meta_cmp_key=partial(_meta_checksum, remote.fs),
|
||||
with_unchanged=True,
|
||||
):
|
||||
if change.typ == ADD or change.typ == MODIFY:
|
||||
if change.typ in (ADD, MODIFY):
|
||||
entry = change.new
|
||||
# preserve md5's which were calculated in out.save() after
|
||||
# downloading
|
||||
|
||||
+1
-1
@@ -104,7 +104,7 @@ def _check_blockers(tmp_dir, lock, info, *, mode, waiters): # noqa: C901, PLR09
|
||||
logger.warning(
|
||||
(
|
||||
"Process '%s' with (Pid %s), in RWLock-file '%s'"
|
||||
" had been killed. Auto remove it from the lock file."
|
||||
" had been killed. Auto removed it from the lock file."
|
||||
),
|
||||
cmd,
|
||||
pid,
|
||||
|
||||
+2
-1
@@ -11,7 +11,7 @@ from dvc.output import (
|
||||
META_SCHEMA,
|
||||
Output,
|
||||
)
|
||||
from dvc.parsing import DO_KWD, FOREACH_KWD, VARS_KWD
|
||||
from dvc.parsing import DO_KWD, FOREACH_KWD, MATRIX_KWD, VARS_KWD
|
||||
from dvc.stage.params import StageParams
|
||||
|
||||
STAGES = "stages"
|
||||
@@ -77,6 +77,7 @@ PARAM_PSTAGE_NON_DEFAULT_SCHEMA = {str: [str]}
|
||||
VARS_SCHEMA = [str, dict]
|
||||
|
||||
STAGE_DEFINITION = {
|
||||
MATRIX_KWD: {str: Any(str, list)},
|
||||
Required(StageParams.PARAM_CMD): Any(str, list),
|
||||
Optional(StageParams.PARAM_WDIR): str,
|
||||
Optional(StageParams.PARAM_DEPS): [str],
|
||||
|
||||
+1
-1
@@ -67,7 +67,7 @@ def map_scm_exception(with_cause: bool = False) -> Iterator[None]:
|
||||
into = SCMError(str(exc))
|
||||
if with_cause:
|
||||
raise into from exc
|
||||
raise into
|
||||
raise into # noqa: B904
|
||||
|
||||
|
||||
@overload
|
||||
|
||||
@@ -285,15 +285,6 @@ class Stage(params.StageParams):
|
||||
return line.strip()
|
||||
return desc
|
||||
|
||||
def env(self) -> Env:
|
||||
from dvc.env import DVC_ROOT
|
||||
|
||||
env: Env = {}
|
||||
if self.repo:
|
||||
env.update({DVC_ROOT: self.repo.root_dir})
|
||||
|
||||
return env
|
||||
|
||||
def changed_deps(
|
||||
self, allow_missing: bool = False, upstream: Optional[List] = None
|
||||
) -> bool:
|
||||
|
||||
@@ -98,7 +98,7 @@ class StageNameUnspecified(DvcException):
|
||||
def __init__(self, file):
|
||||
super().__init__(
|
||||
"Stage name not provided."
|
||||
"Please specify the name as: `{}:stage_name`".format(file.relpath)
|
||||
f"Please specify the name as: `{file.relpath}:stage_name`"
|
||||
)
|
||||
|
||||
|
||||
|
||||
+6
-3
@@ -7,7 +7,7 @@ from typing import TYPE_CHECKING, Any, Dict, Iterable, Optional, Tuple
|
||||
from funcy import get_in, lcat, once, project
|
||||
|
||||
from dvc import dependency, output
|
||||
from dvc.parsing import FOREACH_KWD, JOIN, EntryNotFound
|
||||
from dvc.parsing import FOREACH_KWD, JOIN, MATRIX_KWD, EntryNotFound
|
||||
from dvc.utils.objects import cached_property
|
||||
from dvc_data.hashfile.meta import Meta
|
||||
|
||||
@@ -167,8 +167,11 @@ class StageLoader(Mapping):
|
||||
def __contains__(self, name):
|
||||
return self.resolver.has_key(name) # noqa: W601
|
||||
|
||||
def is_foreach_generated(self, name: str):
|
||||
return name in self.stages_data and FOREACH_KWD in self.stages_data[name]
|
||||
def is_foreach_or_matrix_generated(self, name: str) -> bool:
|
||||
return (
|
||||
name in self.stages_data
|
||||
and {FOREACH_KWD, MATRIX_KWD} & self.stages_data[name].keys()
|
||||
)
|
||||
|
||||
|
||||
class SingleStageLoader(Mapping):
|
||||
|
||||
@@ -39,10 +39,14 @@ def _enforce_cmd_list(cmd):
|
||||
|
||||
|
||||
def prepare_kwargs(stage, run_env=None):
|
||||
from dvc.env import DVC_ROOT
|
||||
|
||||
kwargs = {"cwd": stage.wdir, "env": fix_env(None), "close_fds": True}
|
||||
|
||||
if run_env:
|
||||
kwargs["env"].update(run_env)
|
||||
if DVC_ROOT not in kwargs["env"]:
|
||||
kwargs["env"][DVC_ROOT] = stage.repo.root_dir
|
||||
|
||||
# NOTE: when you specify `shell=True`, `Popen` [1] will default to
|
||||
# `/bin/sh` on *nix and will add ["/bin/sh", "-c"] to your command.
|
||||
|
||||
+2
-2
@@ -32,14 +32,14 @@ def check_stage_path(repo, path, is_wdir=False):
|
||||
wdir_or_path="stage working dir" if is_wdir else "file path", path=path
|
||||
)
|
||||
|
||||
real_path = os.path.realpath(path)
|
||||
real_path = os.path.abspath(path)
|
||||
if not os.path.exists(real_path):
|
||||
raise StagePathNotFoundError(error_msg.format("does not exist"))
|
||||
|
||||
if not os.path.isdir(real_path):
|
||||
raise StagePathNotDirectoryError(error_msg.format("is not directory"))
|
||||
|
||||
proj_dir = os.path.realpath(repo.root_dir)
|
||||
proj_dir = os.path.abspath(repo.root_dir)
|
||||
if real_path != proj_dir and not path_isin(real_path, proj_dir):
|
||||
raise StagePathOutsideError(error_msg.format("is outside of DVC repo"))
|
||||
|
||||
|
||||
@@ -117,10 +117,10 @@ class TestAPI:
|
||||
assert fobj.read() == b"script1"
|
||||
|
||||
tmp = make_tmp_dir("temp-download")
|
||||
fs.get_file("data/foo", tmp / "foo")
|
||||
fs.get_file("data/foo", (tmp / "foo").fs_path)
|
||||
assert (tmp / "foo").read_text() == "foo"
|
||||
|
||||
fs.get_file("scripts/script1", tmp / "script1")
|
||||
fs.get_file("scripts/script1", (tmp / "script1").fs_path)
|
||||
assert (tmp / "script1").read_text() == "script1"
|
||||
|
||||
fs.get("/", (tmp / "all").fs_path, recursive=True)
|
||||
|
||||
@@ -29,8 +29,8 @@ def test_partial_add(bench_dvc, tmp_dir, dvc, dataset, remote):
|
||||
shutil.copytree("partial-copy", dataset, dirs_exist_ok=True)
|
||||
|
||||
# Benchmark operations for adding files to a dataset
|
||||
bench_dvc("add", dataset, name="partial-add")
|
||||
bench_dvc("push", name="partial-add")
|
||||
bench_dvc("add", dataset, name="partial")
|
||||
bench_dvc("push", name="partial")
|
||||
bench_dvc("gc", "-f", "-w", name="noop")
|
||||
bench_dvc("gc", "-f", "-w", "-c", name="cloud-noop")
|
||||
|
||||
@@ -51,7 +51,7 @@ def test_partial_remove(bench_dvc, tmp_dir, dvc, dataset, remote):
|
||||
shutil.rmtree(dataset / f)
|
||||
|
||||
# Benchmark operations for removing files from dataset
|
||||
bench_dvc("add", dataset)
|
||||
bench_dvc("push")
|
||||
bench_dvc("add", dataset, name="update")
|
||||
bench_dvc("push", name="update")
|
||||
bench_dvc("gc", "-f", "-w")
|
||||
bench_dvc("gc", "-f", "-w", "-c", name="cloud")
|
||||
|
||||
@@ -1 +1 @@
|
||||
from .fixtures import * # noqa, pylint: disable=wildcard-import
|
||||
from .fixtures import * # noqa: F403 # pylint: disable=wildcard-import
|
||||
|
||||
@@ -1 +1 @@
|
||||
from .fixtures import * # noqa, pylint: disable=wildcard-import
|
||||
from .fixtures import * # noqa: F403, pylint: disable=wildcard-import
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
from .benchmarks.fixtures import * # noqa, pylint: disable=wildcard-import
|
||||
from .fixtures import * # noqa, pylint: disable=wildcard-import
|
||||
from .benchmarks.fixtures import * # noqa: F403, pylint: disable=wildcard-import
|
||||
from .fixtures import * # noqa: F403, pylint: disable=wildcard-import
|
||||
|
||||
|
||||
def pytest_generate_tests(metafunc):
|
||||
|
||||
@@ -115,8 +115,8 @@ class TmpDir(pathlib.Path):
|
||||
def _require(self, name):
|
||||
if not hasattr(self, name):
|
||||
raise TypeError(
|
||||
"Can't use {name} for this temporary dir. "
|
||||
'Did you forget to use "{name}" fixture?'.format(name=name)
|
||||
f"Can't use {name} for this temporary dir. "
|
||||
f'Did you forget to use "{name}" fixture?'
|
||||
)
|
||||
|
||||
# Bootstrapping methods
|
||||
|
||||
@@ -95,6 +95,9 @@ class TestImportURLVersionAware:
|
||||
assert (tmp_dir / "file").read_text() == "file"
|
||||
assert dvc.status() == {}
|
||||
|
||||
orig_version_id = stage.deps[0].meta.version_id
|
||||
orig_def_path = stage.deps[0].def_path
|
||||
|
||||
dvc.cache.local.clear()
|
||||
remove(tmp_dir / "file")
|
||||
dvc.pull()
|
||||
@@ -108,6 +111,10 @@ class TestImportURLVersionAware:
|
||||
assert (tmp_dir / "file").read_text() == "modified"
|
||||
assert dvc.status() == {}
|
||||
|
||||
stage = first(dvc.index.stages)
|
||||
assert orig_version_id != stage.deps[0].meta.version_id
|
||||
assert orig_def_path == stage.deps[0].def_path
|
||||
|
||||
dvc.cache.local.clear()
|
||||
remove(tmp_dir / "file")
|
||||
dvc.pull()
|
||||
@@ -166,7 +173,7 @@ class TestLsUrl:
|
||||
def test_file(self, cloud, fname):
|
||||
cloud.gen({fname: "foo contents"})
|
||||
fs, fs_path = parse_external_url(cloud.url, cloud.config)
|
||||
result = ls_url(str(cloud / fname), config=cloud.config)
|
||||
result = ls_url(str(cloud / fname), fs_config=cloud.config)
|
||||
match_files(
|
||||
fs,
|
||||
result,
|
||||
@@ -178,7 +185,7 @@ class TestLsUrl:
|
||||
if not (cloud / "dir").is_dir():
|
||||
pytest.skip("Cannot create directories on this cloud")
|
||||
fs, _ = parse_external_url(cloud.url, cloud.config)
|
||||
result = ls_url(str(cloud / "dir"), config=cloud.config)
|
||||
result = ls_url(str(cloud / "dir"), fs_config=cloud.config)
|
||||
match_files(
|
||||
fs,
|
||||
result,
|
||||
@@ -193,7 +200,7 @@ class TestLsUrl:
|
||||
if not (cloud / "dir").is_dir():
|
||||
pytest.skip("Cannot create directories on this cloud")
|
||||
fs, _ = parse_external_url(cloud.url, cloud.config)
|
||||
result = ls_url(str(cloud / "dir"), config=cloud.config, recursive=True)
|
||||
result = ls_url(str(cloud / "dir"), fs_config=cloud.config, recursive=True)
|
||||
match_files(
|
||||
fs,
|
||||
result,
|
||||
@@ -205,14 +212,14 @@ class TestLsUrl:
|
||||
|
||||
def test_nonexistent(self, cloud):
|
||||
with pytest.raises(URLMissingError):
|
||||
ls_url(str(cloud / "dir"), config=cloud.config)
|
||||
ls_url(str(cloud / "dir"), fs_config=cloud.config)
|
||||
|
||||
|
||||
class TestGetUrl:
|
||||
def test_get_file(self, cloud, tmp_dir):
|
||||
cloud.gen({"foo": "foo contents"})
|
||||
|
||||
Repo.get_url(str(cloud / "foo"), "foo_imported", config=cloud.config)
|
||||
Repo.get_url(str(cloud / "foo"), "foo_imported", fs_config=cloud.config)
|
||||
|
||||
assert (tmp_dir / "foo_imported").is_file()
|
||||
assert (tmp_dir / "foo_imported").read_text() == "foo contents"
|
||||
@@ -222,7 +229,7 @@ class TestGetUrl:
|
||||
if not (cloud / "foo").is_dir():
|
||||
pytest.skip("Cannot create directories on this cloud")
|
||||
|
||||
Repo.get_url(str(cloud / "foo"), "foo_imported", config=cloud.config)
|
||||
Repo.get_url(str(cloud / "foo"), "foo_imported", fs_config=cloud.config)
|
||||
|
||||
assert (tmp_dir / "foo_imported").is_dir()
|
||||
assert (tmp_dir / "foo_imported" / "foo").is_file()
|
||||
@@ -235,14 +242,14 @@ class TestGetUrl:
|
||||
pytest.skip("Cannot create directories on this cloud")
|
||||
tmp_dir.gen({"dir": {"subdir": {}}})
|
||||
|
||||
Repo.get_url(str(cloud / "src" / "foo"), dname, config=cloud.config)
|
||||
Repo.get_url(str(cloud / "src" / "foo"), dname, fs_config=cloud.config)
|
||||
|
||||
assert (tmp_dir / dname).is_dir()
|
||||
assert (tmp_dir / dname / "foo").read_text() == "foo contents"
|
||||
|
||||
def test_get_url_nonexistent(self, cloud):
|
||||
with pytest.raises(URLMissingError):
|
||||
Repo.get_url(str(cloud / "nonexistent"), config=cloud.config)
|
||||
Repo.get_url(str(cloud / "nonexistent"), fs_config=cloud.config)
|
||||
|
||||
|
||||
class TestToRemote:
|
||||
|
||||
+3
-13
@@ -218,23 +218,13 @@ def _visual_center(line, width):
|
||||
|
||||
|
||||
def relpath(path, start=os.curdir):
|
||||
path = os.fspath(path)
|
||||
path = os.path.abspath(os.fspath(path))
|
||||
start = os.path.abspath(os.fspath(start))
|
||||
|
||||
# Windows path on different drive than curdir doesn't have relpath
|
||||
if os.name == "nt":
|
||||
# Since python 3.8 os.realpath resolves network shares to their UNC
|
||||
# path. So, to be certain that relative paths correctly captured,
|
||||
# we need to resolve to UNC path first. We resolve only the drive
|
||||
# name so that we don't follow any 'real' symlinks on the path
|
||||
def resolve_network_drive_windows(path_to_resolve):
|
||||
drive, tail = os.path.splitdrive(path_to_resolve)
|
||||
return os.path.join(os.path.realpath(drive), tail)
|
||||
if os.name == "nt" and not os.path.commonprefix([start, path]):
|
||||
return path
|
||||
|
||||
path = resolve_network_drive_windows(os.path.abspath(path))
|
||||
start = resolve_network_drive_windows(start)
|
||||
if not os.path.commonprefix([start, path]):
|
||||
return path
|
||||
return os.path.relpath(path, start)
|
||||
|
||||
|
||||
|
||||
@@ -31,3 +31,11 @@ def truncate_text(text: str, max_length: int, with_ellipsis: bool = True) -> str
|
||||
return text[: max_length - 1] + ELLIPSIS
|
||||
|
||||
return text[:max_length]
|
||||
|
||||
|
||||
def naturalsize(value: float, base: int = 1024) -> str:
|
||||
from tqdm import tqdm
|
||||
|
||||
if value < base:
|
||||
return f"{value:.0f}"
|
||||
return tqdm.format_sizeof(value, divisor=base)
|
||||
|
||||
+16
-4
@@ -1,6 +1,6 @@
|
||||
import logging
|
||||
from pathlib import Path
|
||||
from typing import TYPE_CHECKING, List
|
||||
from typing import TYPE_CHECKING, List, Optional
|
||||
|
||||
from dvc.exceptions import InvalidArgumentError
|
||||
|
||||
@@ -15,7 +15,8 @@ logger = logging.getLogger(__name__)
|
||||
|
||||
def compose_and_dump(
|
||||
output_file: "StrPath",
|
||||
config_dir: str,
|
||||
config_dir: Optional[str],
|
||||
config_module: Optional[str],
|
||||
config_name: str,
|
||||
overrides: List[str],
|
||||
) -> None:
|
||||
@@ -25,6 +26,8 @@ def compose_and_dump(
|
||||
output_file: File where the composed config will be dumped.
|
||||
config_dir: Folder containing the Hydra config files.
|
||||
Must be absolute file system path.
|
||||
config_module: Module containing the Hydra config files.
|
||||
Ignored if `config_dir` is not `None`.
|
||||
config_name: Name of the config file containing defaults,
|
||||
without the .yaml extension.
|
||||
overrides: List of `Hydra Override`_ patterns.
|
||||
@@ -32,12 +35,21 @@ def compose_and_dump(
|
||||
.. _Hydra Override:
|
||||
https://hydra.cc/docs/advanced/override_grammar/basic/
|
||||
"""
|
||||
from hydra import compose, initialize_config_dir
|
||||
from hydra import compose, initialize_config_dir, initialize_config_module
|
||||
from omegaconf import OmegaConf
|
||||
|
||||
from .serialize import DUMPERS
|
||||
|
||||
with initialize_config_dir(config_dir, version_base=None):
|
||||
config_source = config_dir or config_module
|
||||
if not config_source:
|
||||
raise ValueError("Either `config_dir` or `config_module` should be provided.")
|
||||
initialize_config = (
|
||||
initialize_config_dir if config_dir else initialize_config_module
|
||||
)
|
||||
|
||||
with initialize_config( # type: ignore[attr-defined]
|
||||
config_source, version_base=None
|
||||
):
|
||||
cfg = compose(config_name=config_name, overrides=overrides)
|
||||
|
||||
OmegaConf.resolve(cfg)
|
||||
|
||||
@@ -1,11 +1,11 @@
|
||||
from collections import defaultdict
|
||||
from typing import DefaultDict
|
||||
|
||||
from ._common import * # noqa, pylint: disable=wildcard-import
|
||||
from ._json import * # noqa, pylint: disable=wildcard-import
|
||||
from ._py import * # noqa, pylint: disable=wildcard-import
|
||||
from ._toml import * # noqa, pylint: disable=wildcard-import
|
||||
from ._yaml import * # noqa, pylint: disable=wildcard-import
|
||||
from ._common import * # noqa: F403, pylint: disable=wildcard-import
|
||||
from ._json import * # noqa: F403, pylint: disable=wildcard-import
|
||||
from ._py import * # noqa: F403, pylint: disable=wildcard-import
|
||||
from ._toml import * # noqa: F403, pylint: disable=wildcard-import
|
||||
from ._yaml import * # noqa: F403, pylint: disable=wildcard-import
|
||||
|
||||
LOADERS: DefaultDict[str, LoaderFn] = defaultdict( # noqa: F405
|
||||
lambda: load_yaml # noqa: F405
|
||||
|
||||
+8
-9
@@ -34,7 +34,7 @@ dependencies = [
|
||||
"configobj>=5.0.6",
|
||||
"distro>=1.3",
|
||||
"dpath<3,>=2.1.0",
|
||||
"dvc-data>=2.6.0,<2.7.0",
|
||||
"dvc-data>=2.16.0,<2.17.0",
|
||||
"dvc-http>=2.29.0",
|
||||
"dvc-render>=0.3.1,<1",
|
||||
"dvc-studio-client>=0.9.2,<1",
|
||||
@@ -57,7 +57,7 @@ dependencies = [
|
||||
"requests>=2.22",
|
||||
"rich>=12",
|
||||
"ruamel.yaml>=0.17.11",
|
||||
"scmrepo>=1.0.4,<2",
|
||||
"scmrepo>=1.2.1,<2",
|
||||
"shortuuid>=0.5",
|
||||
"shtab<2,>=1.3.4",
|
||||
"tabulate>=0.8.7",
|
||||
@@ -70,13 +70,13 @@ dependencies = [
|
||||
[project.optional-dependencies]
|
||||
all = ["dvc[azure,gdrive,gs,hdfs,oss,s3,ssh,webdav,webhdfs]"]
|
||||
azure = ["dvc-azure>=2.21.2"]
|
||||
dev = ["dvc[azure,gdrive,gs,hdfs,lint,oss,s3,ssh,terraform,tests,webdav,webhdfs]"]
|
||||
dev = ["dvc[azure,gdrive,gs,hdfs,lint,oss,s3,ssh,tests,webdav,webhdfs]"]
|
||||
gdrive = ["dvc-gdrive==2.20"]
|
||||
gs = ["dvc-gs==2.22.1"]
|
||||
hdfs = ["dvc-hdfs==2.19"]
|
||||
lint = [
|
||||
"mypy==1.4.1",
|
||||
"pylint==2.17.4",
|
||||
"mypy==1.5.1",
|
||||
"pylint==2.17.5",
|
||||
"types-colorama",
|
||||
"types-psutil",
|
||||
"types-pyinstaller",
|
||||
@@ -85,11 +85,10 @@ lint = [
|
||||
"types-toml",
|
||||
"types-tqdm",
|
||||
]
|
||||
oss = ["dvc-oss==2.19"]
|
||||
oss = ["dvc-oss>=2.20.0"]
|
||||
s3 = ["dvc-s3==2.23.0"]
|
||||
ssh = ["dvc-ssh>=2.22.1,<3"]
|
||||
ssh_gssapi = ["dvc-ssh[gssapi]>=2.22.1,<3"]
|
||||
terraform = ["tpi[ssh]>=2.1"]
|
||||
testing = [
|
||||
"pytest-test-utils",
|
||||
"pytest-benchmark[histogram]",
|
||||
@@ -103,7 +102,7 @@ tests = [
|
||||
"flaky",
|
||||
"pytest<8,>=7",
|
||||
"pytest-cov>=4.1.0",
|
||||
"pytest-docker>=1,<2",
|
||||
"pytest-docker>=1,<3",
|
||||
"pytest-lazy-fixture",
|
||||
"pytest-mock",
|
||||
"pytest-test-utils",
|
||||
@@ -300,7 +299,7 @@ ignore-variadic-names = true
|
||||
known-first-party = ["dvc", "dvc_data", "dvc_objects", "dvc_render", "dvc_task", "tests"]
|
||||
|
||||
[tool.ruff.pep8-naming]
|
||||
ignore-names = ["M", "SCM"]
|
||||
extend-ignore-names = ["M", "SCM"]
|
||||
|
||||
[tool.ruff.per-file-ignores]
|
||||
"dvc/commands/**" = ["N806"]
|
||||
|
||||
+4
-4
@@ -7,11 +7,11 @@ import pytest
|
||||
|
||||
from dvc import env
|
||||
from dvc.stage import PipelineStage
|
||||
from dvc.testing.fixtures import * # noqa, pylint: disable=wildcard-import
|
||||
from dvc.testing.fixtures import * # noqa: F403, pylint: disable=wildcard-import
|
||||
|
||||
from .dir_helpers import * # noqa, pylint: disable=wildcard-import
|
||||
from .remotes import * # noqa, pylint: disable=wildcard-import
|
||||
from .scripts import * # noqa, pylint: disable=wildcard-import
|
||||
from .dir_helpers import * # noqa: F403 # pylint: disable=wildcard-import
|
||||
from .remotes import * # noqa: F403 # pylint: disable=wildcard-import
|
||||
from .scripts import * # noqa: F403, pylint: disable=wildcard-import
|
||||
|
||||
# Prevent updater and analytics from running their processes
|
||||
os.environ["DVC_TEST"] = "true"
|
||||
|
||||
@@ -5,7 +5,7 @@ from funcy import first, get_in
|
||||
|
||||
from dvc import api
|
||||
from dvc.exceptions import OutputNotFoundError, PathMissingError
|
||||
from dvc.testing.api_tests import TestAPI # noqa, pylint: disable=unused-import
|
||||
from dvc.testing.api_tests import TestAPI # noqa: F401, pylint: disable=unused-import
|
||||
from dvc.testing.tmp_dir import make_subrepo
|
||||
from dvc.utils.fs import remove
|
||||
|
||||
|
||||
@@ -1,6 +1,7 @@
|
||||
import pytest
|
||||
|
||||
from tests.unit.repo.experiments.conftest import ( # noqa, pylint disable=unused-argument
|
||||
# pylint: disable-next=unused-argument
|
||||
from tests.unit.repo.experiments.conftest import ( # noqa: F401
|
||||
exp_stage,
|
||||
failed_exp_stage,
|
||||
session_app,
|
||||
|
||||
@@ -1,160 +0,0 @@
|
||||
import posixpath
|
||||
from contextlib import contextmanager
|
||||
from functools import partial
|
||||
from urllib.parse import urlparse
|
||||
|
||||
import pytest
|
||||
from dvc_ssh import SSHFileSystem
|
||||
from dvc_ssh.tests.cloud import TEST_SSH_KEY_PATH, TEST_SSH_USER
|
||||
|
||||
from dvc.repo.experiments.executor.base import ExecutorInfo, ExecutorResult
|
||||
from dvc.repo.experiments.executor.ssh import SSHExecutor
|
||||
from dvc.repo.experiments.refs import EXEC_HEAD, EXEC_MERGE
|
||||
from tests.func.machine.conftest import * # noqa, pylint: disable=wildcard-import
|
||||
|
||||
|
||||
@contextmanager
|
||||
def _ssh_factory(cloud):
|
||||
yield SSHFileSystem(
|
||||
host=cloud.host,
|
||||
port=cloud.port,
|
||||
user=TEST_SSH_USER,
|
||||
keyfile=TEST_SSH_KEY_PATH,
|
||||
)
|
||||
|
||||
|
||||
def test_init_from_stash(tmp_dir, scm, dvc, machine_instance, mocker):
|
||||
mock = mocker.patch.object(SSHExecutor, "_from_stash_entry")
|
||||
mock_entry = mocker.Mock()
|
||||
mock_entry.name = ""
|
||||
SSHExecutor.from_stash_entry(
|
||||
dvc,
|
||||
mock_entry,
|
||||
machine_name="foo",
|
||||
)
|
||||
_args, kwargs = mock.call_args
|
||||
assert kwargs["host"] == machine_instance["instance_ip"]
|
||||
|
||||
|
||||
@pytest.mark.needs_internet
|
||||
@pytest.mark.parametrize("cloud", [pytest.lazy_fixture("git_ssh")])
|
||||
def test_init_git(tmp_dir, dvc, scm, cloud, mocker):
|
||||
tmp_dir.scm_gen({"foo": "foo", "dir": {"bar": "bar"}}, commit="init")
|
||||
baseline_rev = scm.get_rev()
|
||||
tmp_dir.gen("foo", "stashed")
|
||||
scm.gitpython.git.stash()
|
||||
rev = scm.resolve_rev("stash@{0}")
|
||||
|
||||
mock = mocker.Mock(baseline_rev=baseline_rev, head_rev=baseline_rev)
|
||||
|
||||
root_url = cloud / SSHExecutor.gen_dirname()
|
||||
|
||||
executor = SSHExecutor(
|
||||
root_dir=root_url.path,
|
||||
dvc_dir=".dvc",
|
||||
baseline_rev=baseline_rev,
|
||||
host=root_url.host,
|
||||
port=root_url.port,
|
||||
username=TEST_SSH_USER,
|
||||
fs_factory=partial(_ssh_factory, cloud),
|
||||
)
|
||||
infofile = str((root_url / "foo.run").path)
|
||||
executor.init_git(dvc, scm, rev, mock, infofile=infofile)
|
||||
assert root_url.path == executor._repo_abspath
|
||||
|
||||
fs = cloud._ssh
|
||||
assert fs.exists(posixpath.join(executor._repo_abspath, "foo"))
|
||||
assert fs.exists(posixpath.join(executor._repo_abspath, "dir"))
|
||||
assert fs.exists(posixpath.join(executor._repo_abspath, "dir", "bar"))
|
||||
|
||||
|
||||
@pytest.mark.needs_internet
|
||||
@pytest.mark.parametrize("cloud", [pytest.lazy_fixture("git_ssh")])
|
||||
def test_init_cache(tmp_dir, dvc, scm, cloud):
|
||||
foo = tmp_dir.dvc_gen("foo", "foo", commit="init")[0].outs[0]
|
||||
rev = scm.get_rev()
|
||||
scm.set_ref(EXEC_HEAD, rev)
|
||||
scm.set_ref(EXEC_MERGE, rev)
|
||||
root_url = cloud / SSHExecutor.gen_dirname()
|
||||
|
||||
executor = SSHExecutor(
|
||||
root_dir=root_url.path,
|
||||
dvc_dir=".dvc",
|
||||
baseline_rev=rev,
|
||||
host=root_url.host,
|
||||
port=root_url.port,
|
||||
username=TEST_SSH_USER,
|
||||
fs_factory=partial(_ssh_factory, cloud),
|
||||
)
|
||||
executor.init_cache(dvc, rev)
|
||||
|
||||
fs = cloud._ssh
|
||||
foo_hash = foo.hash_info.value
|
||||
assert fs.exists(
|
||||
posixpath.join(
|
||||
executor._repo_abspath, ".dvc", "cache", foo_hash[:2], foo_hash[2:]
|
||||
)
|
||||
)
|
||||
|
||||
|
||||
@pytest.mark.needs_internet
|
||||
@pytest.mark.parametrize("cloud", [pytest.lazy_fixture("git_ssh")])
|
||||
def test_reproduce(tmp_dir, scm, dvc, cloud, exp_stage, mocker):
|
||||
from sshfs import SSHFileSystem as _sshfs # noqa: N813
|
||||
|
||||
rev = scm.get_rev()
|
||||
root_url = cloud / SSHExecutor.gen_dirname()
|
||||
mocker.patch.object(SSHFileSystem, "exists", return_value=True)
|
||||
mock_execute = mocker.patch.object(_sshfs, "execute")
|
||||
info = ExecutorInfo(
|
||||
str(root_url),
|
||||
rev,
|
||||
"machine-foo",
|
||||
str(root_url.path),
|
||||
".dvc",
|
||||
)
|
||||
infofile = str((root_url / "foo.run").path)
|
||||
SSHExecutor.reproduce(
|
||||
info,
|
||||
rev,
|
||||
fs_factory=partial(_ssh_factory, cloud),
|
||||
)
|
||||
mock_execute.assert_called_once()
|
||||
_name, args, _kwargs = mock_execute.mock_calls[0]
|
||||
assert f"dvc exp exec-run --infofile {infofile}" in args[0]
|
||||
|
||||
|
||||
@pytest.mark.needs_internet
|
||||
@pytest.mark.parametrize("cloud", [pytest.lazy_fixture("git_ssh")])
|
||||
def test_run_machine(tmp_dir, scm, dvc, cloud, exp_stage, mocker):
|
||||
baseline = scm.get_rev()
|
||||
factory = partial(_ssh_factory, cloud)
|
||||
mocker.patch.object(
|
||||
dvc.machine,
|
||||
"get_executor_kwargs",
|
||||
return_value={
|
||||
"host": cloud.host,
|
||||
"port": cloud.port,
|
||||
"username": TEST_SSH_USER,
|
||||
"fs_factory": factory,
|
||||
},
|
||||
)
|
||||
mocker.patch.object(dvc.machine, "get_setup_script", return_value=None)
|
||||
mock_repro = mocker.patch.object(
|
||||
SSHExecutor,
|
||||
"reproduce",
|
||||
return_value=ExecutorResult("abc123", None, False),
|
||||
)
|
||||
|
||||
tmp_dir.gen("params.yaml", "foo: 2")
|
||||
dvc.experiments.run(exp_stage.addressing, machine="foo")
|
||||
mock_repro.assert_called_once()
|
||||
_name, _args, kwargs = mock_repro.mock_calls[0]
|
||||
info = kwargs["info"]
|
||||
url = urlparse(info.git_url)
|
||||
assert url.scheme == "ssh"
|
||||
assert url.hostname == cloud.host
|
||||
assert url.port == cloud.port
|
||||
assert info.baseline_rev == baseline
|
||||
assert kwargs["infofile"] is not None
|
||||
assert kwargs["fs_factory"] is not None
|
||||
@@ -12,6 +12,7 @@ from dvc.dvcfile import PROJECT_FILE
|
||||
from dvc.env import (
|
||||
DVC_EXP_BASELINE_REV,
|
||||
DVC_EXP_NAME,
|
||||
DVC_ROOT,
|
||||
DVC_STUDIO_OFFLINE,
|
||||
DVC_STUDIO_REPO_URL,
|
||||
DVC_STUDIO_TOKEN,
|
||||
@@ -348,7 +349,8 @@ def test_packed_args_exists(tmp_dir, scm, dvc, exp_stage, caplog):
|
||||
|
||||
|
||||
def test_list(tmp_dir, scm, dvc, exp_stage):
|
||||
baseline_a = scm.get_rev()
|
||||
baseline_old = scm.get_rev()
|
||||
|
||||
results = dvc.experiments.run(exp_stage.addressing, params=["foo=2"])
|
||||
exp_a = first(results)
|
||||
ref_info_a = first(exp_refs_by_rev(scm, exp_a))
|
||||
@@ -358,34 +360,36 @@ def test_list(tmp_dir, scm, dvc, exp_stage):
|
||||
ref_info_b = first(exp_refs_by_rev(scm, exp_b))
|
||||
|
||||
tmp_dir.scm_gen("new", "new", commit="new")
|
||||
baseline_new = scm.get_rev()
|
||||
|
||||
results = dvc.experiments.run(exp_stage.addressing, params=["foo=4"])
|
||||
exp_c = first(results)
|
||||
ref_info_c = first(exp_refs_by_rev(scm, exp_c))
|
||||
|
||||
assert dvc.experiments.ls() == {"refs/heads/master": [(ref_info_c.name, exp_c)]}
|
||||
assert dvc.experiments.ls() == {baseline_new: [(ref_info_c.name, exp_c)]}
|
||||
|
||||
exp_list = dvc.experiments.ls(rev=ref_info_a.baseline_sha)
|
||||
assert {key: set(val) for key, val in exp_list.items()} == {
|
||||
baseline_a: {(ref_info_a.name, exp_a), (ref_info_b.name, exp_b)}
|
||||
baseline_old: {(ref_info_a.name, exp_a), (ref_info_b.name, exp_b)}
|
||||
}
|
||||
|
||||
exp_list = dvc.experiments.ls(rev=[baseline_a, scm.get_rev()])
|
||||
exp_list = dvc.experiments.ls(rev=[baseline_old, baseline_new])
|
||||
assert {key: set(val) for key, val in exp_list.items()} == {
|
||||
baseline_a: {(ref_info_a.name, exp_a), (ref_info_b.name, exp_b)},
|
||||
"refs/heads/master": {(ref_info_c.name, exp_c)},
|
||||
baseline_old: {(ref_info_a.name, exp_a), (ref_info_b.name, exp_b)},
|
||||
baseline_new: {(ref_info_c.name, exp_c)},
|
||||
}
|
||||
|
||||
exp_list = dvc.experiments.ls(all_commits=True)
|
||||
assert {key: set(val) for key, val in exp_list.items()} == {
|
||||
baseline_a: {(ref_info_a.name, exp_a), (ref_info_b.name, exp_b)},
|
||||
"refs/heads/master": {(ref_info_c.name, exp_c)},
|
||||
baseline_old: {(ref_info_a.name, exp_a), (ref_info_b.name, exp_b)},
|
||||
baseline_new: {(ref_info_c.name, exp_c)},
|
||||
}
|
||||
|
||||
scm.checkout("branch", True)
|
||||
exp_list = dvc.experiments.ls(all_commits=True)
|
||||
assert {key: set(val) for key, val in exp_list.items()} == {
|
||||
baseline_a: {(ref_info_a.name, exp_a), (ref_info_b.name, exp_b)},
|
||||
"refs/heads/branch": {(ref_info_c.name, exp_c)},
|
||||
baseline_old: {(ref_info_a.name, exp_a), (ref_info_b.name, exp_b)},
|
||||
baseline_new: {(ref_info_c.name, exp_c)},
|
||||
}
|
||||
|
||||
|
||||
@@ -617,6 +621,7 @@ def test_run_env(tmp_dir, dvc, scm, mocker):
|
||||
from dvc.env import (
|
||||
DVC_EXP_BASELINE_REV,
|
||||
DVC_EXP_NAME,
|
||||
DVC_ROOT,
|
||||
DVC_STUDIO_OFFLINE,
|
||||
DVC_STUDIO_REPO_URL,
|
||||
DVC_STUDIO_TOKEN,
|
||||
@@ -625,6 +630,7 @@ def test_run_env(tmp_dir, dvc, scm, mocker):
|
||||
for v in (
|
||||
DVC_EXP_BASELINE_REV,
|
||||
DVC_EXP_NAME,
|
||||
DVC_ROOT,
|
||||
DVC_STUDIO_OFFLINE,
|
||||
DVC_STUDIO_REPO_URL,
|
||||
DVC_STUDIO_TOKEN,
|
||||
@@ -652,6 +658,7 @@ def test_run_env(tmp_dir, dvc, scm, mocker):
|
||||
dvc.experiments.run()
|
||||
assert (tmp_dir / DVC_EXP_BASELINE_REV).read_text().strip() == baseline
|
||||
assert (tmp_dir / DVC_EXP_NAME).read_text().strip()
|
||||
assert (tmp_dir / DVC_ROOT).read_text().strip() == dvc.root_dir
|
||||
assert (tmp_dir / DVC_STUDIO_TOKEN).read_text().strip() == "TOKEN"
|
||||
assert (tmp_dir / DVC_STUDIO_REPO_URL).read_text().strip() == "REPO_URL"
|
||||
assert (tmp_dir / DVC_STUDIO_URL).read_text().strip() == "BASE_URL"
|
||||
@@ -666,7 +673,7 @@ def test_experiment_unchanged(tmp_dir, scm, dvc, exp_stage):
|
||||
dvc.experiments.run(exp_stage.addressing)
|
||||
dvc.experiments.run(exp_stage.addressing)
|
||||
|
||||
assert len(dvc.experiments.ls()["refs/heads/master"]) == 2
|
||||
assert len(dvc.experiments.ls()[scm.get_rev()]) == 2
|
||||
|
||||
|
||||
def test_experiment_run_dry(tmp_dir, scm, dvc, exp_stage):
|
||||
|
||||
Some files were not shown because too many files have changed in this diff Show More
Reference in New Issue
Block a user