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f7a82f6fc0 |
@@ -5,6 +5,7 @@ on:
|
||||
- master
|
||||
release:
|
||||
types: [released, prereleased]
|
||||
workflow_dispatch:
|
||||
jobs:
|
||||
deb:
|
||||
runs-on: ubuntu-18.04
|
||||
|
||||
@@ -13,6 +13,7 @@ env:
|
||||
|
||||
jobs:
|
||||
lint:
|
||||
timeout-minutes: 10
|
||||
runs-on: ubuntu-latest
|
||||
steps:
|
||||
- uses: actions/[email protected]
|
||||
@@ -32,6 +33,7 @@ jobs:
|
||||
run: python setup.py checkdocs
|
||||
- uses: pre-commit/[email protected]
|
||||
tests:
|
||||
timeout-minutes: 45
|
||||
runs-on: ${{ matrix.os }}
|
||||
strategy:
|
||||
fail-fast: false
|
||||
@@ -97,6 +99,7 @@ jobs:
|
||||
run: |
|
||||
echo "extra_test_args=--disable-gdrive" >> $GITHUB_ENV
|
||||
- name: run tests
|
||||
timeout-minutes: 30
|
||||
env:
|
||||
GDRIVE_CREDENTIALS_DATA: ${{ secrets.GDRIVE_CREDENTIALS_DATA }}
|
||||
AWS_ACCESS_KEY_ID: ${{ secrets.AWS_ACCESS_KEY_ID }}
|
||||
@@ -109,7 +112,7 @@ jobs:
|
||||
--cov-report=xml --cov-report=term
|
||||
--all ${{ env.extra_test_args }}
|
||||
- name: upload coverage report
|
||||
uses: codecov/codecov-action@v2.0.3
|
||||
uses: codecov/codecov-action@v2.1.0
|
||||
with:
|
||||
file: ./coverage.xml
|
||||
fail_ci_if_error: false
|
||||
|
||||
+1
-1
@@ -1,3 +1,3 @@
|
||||
include fastentrypoints.py
|
||||
include LICENSE
|
||||
include test_requirements.txt
|
||||
recursive-include requirements *.txt
|
||||
|
||||
+7
-1
@@ -222,7 +222,9 @@ Contributing
|
||||
|Maintainability| |Donate|
|
||||
|
||||
Contributions are welcome! Please see our `Contributing Guide <https://dvc.org/doc/user-guide/contributing/core>`_ for more
|
||||
details.
|
||||
details. Thanks to all our contributors!
|
||||
|
||||
|Contribs|
|
||||
|
||||
Mailing List
|
||||
============
|
||||
@@ -299,3 +301,7 @@ Barrak, A., Eghan, E.E. and Adams, B. `On the Co-evolution of ML Pipelines and S
|
||||
.. |Flowchart| image:: https://dvc.org/img/flow.gif
|
||||
:target: https://dvc.org/img/flow.gif
|
||||
:alt: how_dvc_works
|
||||
|
||||
.. |Contribs| image:: https://contrib.rocks/image?repo=iterative/dvc
|
||||
:target: https://github.com/iterative/dvc/graphs/contributors
|
||||
:alt: Contributors
|
||||
|
||||
+17
-4
@@ -66,7 +66,8 @@ class CmdConfig(CmdBaseNoRepo):
|
||||
)
|
||||
return 1
|
||||
|
||||
levels = [self.args.level] if self.args.level else self.config.LEVELS
|
||||
levels = self._get_appropriate_levels(self.args.level)
|
||||
|
||||
for level in levels:
|
||||
conf = self.config.read(level)
|
||||
prefix = self._config_file_prefix(
|
||||
@@ -81,9 +82,7 @@ class CmdConfig(CmdBaseNoRepo):
|
||||
def _get(self, remote, section, opt):
|
||||
from dvc.config import ConfigError
|
||||
|
||||
levels = (
|
||||
[self.args.level] if self.args.level else self.config.LEVELS[::-1]
|
||||
)
|
||||
levels = self._get_appropriate_levels(self.args.level)[::-1]
|
||||
|
||||
for level in levels:
|
||||
conf = self.config.read(level)
|
||||
@@ -136,6 +135,20 @@ class CmdConfig(CmdBaseNoRepo):
|
||||
f"option '{opt}' doesn't exist in {name} '{section}'"
|
||||
)
|
||||
|
||||
def _get_appropriate_levels(self, levels):
|
||||
if levels:
|
||||
self._validate_level_for_non_repo_operation(levels)
|
||||
return [levels]
|
||||
if self.config.dvc_dir is None:
|
||||
return self.config.SYSTEM_LEVELS
|
||||
return self.config.LEVELS
|
||||
|
||||
def _validate_level_for_non_repo_operation(self, level):
|
||||
from dvc.config import ConfigError
|
||||
|
||||
if self.config.dvc_dir is None and level in self.config.REPO_LEVELS:
|
||||
raise ConfigError("Not inside a DVC repo")
|
||||
|
||||
@staticmethod
|
||||
def _format_config(config, prefix=""):
|
||||
from dvc.utils.flatten import flatten
|
||||
|
||||
+191
-33
@@ -1,5 +1,6 @@
|
||||
import argparse
|
||||
import logging
|
||||
import os
|
||||
from collections import Counter, OrderedDict, defaultdict
|
||||
from datetime import date, datetime
|
||||
from fnmatch import fnmatch
|
||||
@@ -141,6 +142,8 @@ def _collect_rows(
|
||||
precision=DEFAULT_PRECISION,
|
||||
sort_by=None,
|
||||
sort_order=None,
|
||||
fill_value=FILL_VALUE,
|
||||
iso=False,
|
||||
):
|
||||
from dvc.scm.git import Git
|
||||
|
||||
@@ -161,8 +164,8 @@ def _collect_rows(
|
||||
elif exp.get("queued"):
|
||||
state = "Queued"
|
||||
else:
|
||||
state = FILL_VALUE
|
||||
executor = exp.get("executor", FILL_VALUE)
|
||||
state = fill_value
|
||||
executor = exp.get("executor", fill_value)
|
||||
is_baseline = rev == "baseline"
|
||||
|
||||
if is_baseline:
|
||||
@@ -202,12 +205,12 @@ def _collect_rows(
|
||||
exp_name,
|
||||
name_rev,
|
||||
typ,
|
||||
_format_time(exp.get("timestamp")),
|
||||
_format_time(exp.get("timestamp"), fill_value, iso),
|
||||
parent,
|
||||
state,
|
||||
executor,
|
||||
]
|
||||
fill_value = FILL_VALUE_ERRORED if results.get("error") else FILL_VALUE
|
||||
fill_value = FILL_VALUE_ERRORED if results.get("error") else fill_value
|
||||
_extend_row(
|
||||
row,
|
||||
metric_names,
|
||||
@@ -274,14 +277,18 @@ def _sort_exp(experiments, sort_path, sort_name, typ, reverse):
|
||||
return ret
|
||||
|
||||
|
||||
def _format_time(timestamp):
|
||||
if timestamp is None:
|
||||
return FILL_VALUE
|
||||
if timestamp.date() == date.today():
|
||||
def _format_time(datetime_obj, fill_value=FILL_VALUE, iso=False):
|
||||
if datetime_obj is None:
|
||||
return fill_value
|
||||
|
||||
if iso:
|
||||
return datetime_obj.isoformat()
|
||||
|
||||
if datetime_obj.date() == date.today():
|
||||
fmt = "%I:%M %p"
|
||||
else:
|
||||
fmt = "%b %d, %Y"
|
||||
return timestamp.strftime(fmt)
|
||||
return datetime_obj.strftime(fmt)
|
||||
|
||||
|
||||
def _extend_row(row, names, items, precision, fill_value=FILL_VALUE):
|
||||
@@ -320,6 +327,7 @@ def _parse_filter_list(param_list):
|
||||
|
||||
def experiments_table(
|
||||
all_experiments,
|
||||
headers,
|
||||
metric_headers,
|
||||
metric_names,
|
||||
param_headers,
|
||||
@@ -327,22 +335,15 @@ def experiments_table(
|
||||
sort_by=None,
|
||||
sort_order=None,
|
||||
precision=DEFAULT_PRECISION,
|
||||
fill_value=FILL_VALUE,
|
||||
iso=False,
|
||||
) -> "TabularData":
|
||||
from funcy import lconcat
|
||||
|
||||
from dvc.compare import TabularData
|
||||
|
||||
headers = [
|
||||
"Experiment",
|
||||
"rev",
|
||||
"typ",
|
||||
"Created",
|
||||
"parent",
|
||||
"State",
|
||||
"Executor",
|
||||
]
|
||||
td = TabularData(
|
||||
lconcat(headers, metric_headers, param_headers), fill_value=FILL_VALUE
|
||||
lconcat(headers, metric_headers, param_headers), fill_value=fill_value
|
||||
)
|
||||
for base_rev, experiments in all_experiments.items():
|
||||
rows = _collect_rows(
|
||||
@@ -353,6 +354,8 @@ def experiments_table(
|
||||
sort_by=sort_by,
|
||||
sort_order=sort_order,
|
||||
precision=precision,
|
||||
fill_value=fill_value,
|
||||
iso=iso,
|
||||
)
|
||||
td.extend(rows)
|
||||
|
||||
@@ -385,8 +388,10 @@ def baseline_styler(typ):
|
||||
|
||||
|
||||
def show_experiments(
|
||||
all_experiments, pager=True, no_timestamp=False, **kwargs
|
||||
all_experiments, pager=True, no_timestamp=False, show_csv=False, **kwargs
|
||||
):
|
||||
from funcy.seqs import flatten as flatten_list
|
||||
|
||||
include_metrics = _parse_filter_list(kwargs.pop("include_metrics", []))
|
||||
exclude_metrics = _parse_filter_list(kwargs.pop("exclude_metrics", []))
|
||||
include_params = _parse_filter_list(kwargs.pop("include_params", []))
|
||||
@@ -399,11 +404,26 @@ def show_experiments(
|
||||
include_params=include_params,
|
||||
exclude_params=exclude_params,
|
||||
)
|
||||
metric_headers = _normalize_headers(metric_names)
|
||||
param_headers = _normalize_headers(param_names)
|
||||
|
||||
headers = [
|
||||
"Experiment",
|
||||
"rev",
|
||||
"typ",
|
||||
"Created",
|
||||
"parent",
|
||||
"State",
|
||||
"Executor",
|
||||
]
|
||||
|
||||
names = {**metric_names, **param_names}
|
||||
counter = Counter(flatten_list([list(a.keys()) for a in names.values()]))
|
||||
counter.update(headers)
|
||||
metric_headers = _normalize_headers(metric_names, counter)
|
||||
param_headers = _normalize_headers(param_names, counter)
|
||||
|
||||
td = experiments_table(
|
||||
all_experiments,
|
||||
headers,
|
||||
metric_headers,
|
||||
metric_names,
|
||||
param_headers,
|
||||
@@ -411,6 +431,8 @@ def show_experiments(
|
||||
kwargs.get("sort_by"),
|
||||
kwargs.get("sort_order"),
|
||||
kwargs.get("precision"),
|
||||
kwargs.get("fill_value"),
|
||||
kwargs.get("iso"),
|
||||
)
|
||||
|
||||
if no_timestamp:
|
||||
@@ -422,9 +444,12 @@ def show_experiments(
|
||||
|
||||
row_styles = lmap(baseline_styler, td.column("typ"))
|
||||
|
||||
merge_headers = ["Experiment", "rev", "typ", "parent"]
|
||||
td.column("Experiment")[:] = map(prepare_exp_id, td.as_dict(merge_headers))
|
||||
td.drop(*merge_headers[1:])
|
||||
if not show_csv:
|
||||
merge_headers = ["Experiment", "rev", "typ", "parent"]
|
||||
td.column("Experiment")[:] = map(
|
||||
prepare_exp_id, td.as_dict(merge_headers)
|
||||
)
|
||||
td.drop(*merge_headers[1:])
|
||||
|
||||
headers = {"metrics": metric_headers, "params": param_headers}
|
||||
styles = {
|
||||
@@ -453,13 +478,11 @@ def show_experiments(
|
||||
rich_table=True,
|
||||
header_styles=styles,
|
||||
row_styles=row_styles,
|
||||
show_csv=show_csv,
|
||||
)
|
||||
|
||||
|
||||
def _normalize_headers(names):
|
||||
count = Counter(
|
||||
name for path in names for name in names[path] for path in names
|
||||
)
|
||||
def _normalize_headers(names, count):
|
||||
return [
|
||||
name if count[name] == 1 else f"{path}:{name}"
|
||||
for path in names
|
||||
@@ -493,6 +516,14 @@ class CmdExperimentsShow(CmdBase):
|
||||
|
||||
ui.write(json.dumps(all_experiments, default=_format_json))
|
||||
else:
|
||||
precision = (
|
||||
self.args.precision or None
|
||||
if self.args.show_csv
|
||||
else DEFAULT_PRECISION
|
||||
)
|
||||
fill_value = "" if self.args.show_csv else FILL_VALUE
|
||||
iso = True if self.args.show_csv else False
|
||||
|
||||
show_experiments(
|
||||
all_experiments,
|
||||
include_metrics=self.args.include_metrics,
|
||||
@@ -502,8 +533,11 @@ class CmdExperimentsShow(CmdBase):
|
||||
no_timestamp=self.args.no_timestamp,
|
||||
sort_by=self.args.sort_by,
|
||||
sort_order=self.args.sort_order,
|
||||
precision=self.args.precision or DEFAULT_PRECISION,
|
||||
precision=precision,
|
||||
fill_value=fill_value,
|
||||
iso=iso,
|
||||
pager=not self.args.no_pager,
|
||||
show_csv=self.args.show_csv,
|
||||
)
|
||||
return 0
|
||||
|
||||
@@ -756,6 +790,62 @@ class CmdExperimentsRemove(CmdBase):
|
||||
return 0
|
||||
|
||||
|
||||
class CmdExperimentsInit(CmdBase):
|
||||
CODE = "src"
|
||||
DATA = "data"
|
||||
MODELS = "models"
|
||||
DEFAULT_METRICS = "metrics.json"
|
||||
DEFAULT_PARAMS = "params.yaml"
|
||||
PLOTS = "plots"
|
||||
DVCLIVE = "dvclive"
|
||||
DEFAULT_NAME = "default"
|
||||
|
||||
def run(self):
|
||||
from dvc.command.stage import parse_cmd
|
||||
|
||||
cmd = parse_cmd(self.args.cmd)
|
||||
if not cmd:
|
||||
raise InvalidArgumentError("command is not specified")
|
||||
if self.args.interactive:
|
||||
raise NotImplementedError(
|
||||
"'-i/--interactive' is not implemented yet."
|
||||
)
|
||||
if self.args.explicit:
|
||||
raise NotImplementedError("'--explicit' is not implemented yet.")
|
||||
if self.args.template:
|
||||
raise NotImplementedError("template is not supported yet.")
|
||||
|
||||
from dvc.utils.serialize import LOADERS
|
||||
|
||||
code = self.args.code or self.CODE
|
||||
data = self.args.data or self.DATA
|
||||
models = self.args.models or self.MODELS
|
||||
metrics = self.args.metrics or self.DEFAULT_METRICS
|
||||
params_path = self.args.params or self.DEFAULT_PARAMS
|
||||
plots = self.args.plots or self.PLOTS
|
||||
dvclive = self.args.live or self.DVCLIVE
|
||||
|
||||
_, ext = os.path.splitext(params_path)
|
||||
params = list(LOADERS[ext](params_path))
|
||||
|
||||
name = self.args.name or self.DEFAULT_NAME
|
||||
stage = self.repo.stage.add(
|
||||
name=name,
|
||||
cmd=cmd,
|
||||
deps=[code, data],
|
||||
outs=[models],
|
||||
params=[{params_path: params}],
|
||||
metrics_no_cache=[metrics],
|
||||
plots_no_cache=[plots],
|
||||
live=dvclive,
|
||||
force=True,
|
||||
)
|
||||
|
||||
if self.args.run:
|
||||
return self.repo.experiments.run(targets=[stage.addressing])
|
||||
return 0
|
||||
|
||||
|
||||
def add_parser(subparsers, parent_parser):
|
||||
EXPERIMENTS_HELP = "Commands to run and compare experiments."
|
||||
|
||||
@@ -883,6 +973,12 @@ def add_parser(subparsers, parent_parser):
|
||||
default=False,
|
||||
help="Print output in JSON format instead of a human-readable table.",
|
||||
)
|
||||
experiments_show_parser.add_argument(
|
||||
"--show-csv",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Print output in csv format instead of a human-readable table.",
|
||||
)
|
||||
experiments_show_parser.add_argument(
|
||||
"--precision",
|
||||
type=int,
|
||||
@@ -1112,9 +1208,9 @@ def add_parser(subparsers, parent_parser):
|
||||
nargs="?",
|
||||
default=None,
|
||||
help=(
|
||||
"Optional Git remote name or Git URL. If provided, experiments "
|
||||
"from the specified Git repository will be listed instead of "
|
||||
"local experiments."
|
||||
"Optional Git remote name or Git URL. "
|
||||
"If provided, experiments from the specified Git repository "
|
||||
" will be listed instead of local ones."
|
||||
),
|
||||
metavar="[<git_remote>]",
|
||||
)
|
||||
@@ -1264,6 +1360,68 @@ def add_parser(subparsers, parent_parser):
|
||||
)
|
||||
experiments_remove_parser.set_defaults(func=CmdExperimentsRemove)
|
||||
|
||||
EXPERIMENTS_INIT_HELP = "Initialize experiments."
|
||||
experiments_init_parser = experiments_subparsers.add_parser(
|
||||
"init",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(EXPERIMENTS_INIT_HELP, "exp/init"),
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
experiments_init_parser.add_argument(
|
||||
"cmd",
|
||||
nargs=argparse.REMAINDER,
|
||||
help="Command to execute.",
|
||||
metavar="command",
|
||||
)
|
||||
experiments_init_parser.add_argument(
|
||||
"--run",
|
||||
action="store_true",
|
||||
help="Run the experiment after initializing it",
|
||||
)
|
||||
experiments_init_parser.add_argument(
|
||||
"--interactive",
|
||||
"-i",
|
||||
action="store_true",
|
||||
help="Prompt for values that are not provided",
|
||||
)
|
||||
experiments_init_parser.add_argument(
|
||||
"--template", help="Stage template to use to fill with provided values"
|
||||
)
|
||||
experiments_init_parser.add_argument(
|
||||
"--explicit", help="Only use the path values explicitly provided"
|
||||
)
|
||||
experiments_init_parser.add_argument(
|
||||
"--name", "-n", help="Name of the stage to create"
|
||||
)
|
||||
experiments_init_parser.add_argument(
|
||||
"--code",
|
||||
help="Path to the source file or directory "
|
||||
"which your experiments depend",
|
||||
)
|
||||
experiments_init_parser.add_argument(
|
||||
"--data",
|
||||
help="Path to the data file or directory "
|
||||
"which your experiments depend",
|
||||
)
|
||||
experiments_init_parser.add_argument(
|
||||
"--models",
|
||||
help="Path to the model file or directory for your experiments",
|
||||
)
|
||||
experiments_init_parser.add_argument(
|
||||
"--params", help="Path to the parameters file for your experiments"
|
||||
)
|
||||
experiments_init_parser.add_argument(
|
||||
"--metrics", help="Path to the metrics file for your experiments"
|
||||
)
|
||||
experiments_init_parser.add_argument(
|
||||
"--plots",
|
||||
help="Path to the plots file or directory for your experiments",
|
||||
)
|
||||
experiments_init_parser.add_argument(
|
||||
"--live", help="Path to log dvclive outputs for your experiments"
|
||||
)
|
||||
experiments_init_parser.set_defaults(func=CmdExperimentsInit)
|
||||
|
||||
|
||||
def _add_run_common(parser):
|
||||
"""Add common args for 'exp run' and 'exp resume'."""
|
||||
|
||||
@@ -69,6 +69,22 @@ class CmdMachineRemove(CmdMachineConfig):
|
||||
return 0
|
||||
|
||||
|
||||
class CmdMachineList(CmdMachineConfig):
|
||||
def run(self):
|
||||
levels = [self.args.level] if self.args.level else self.config.LEVELS
|
||||
for level in levels:
|
||||
conf = self.config.read(level)["machine"]
|
||||
if self.args.name:
|
||||
conf = conf.get(self.args.name, {})
|
||||
prefix = self._config_file_prefix(
|
||||
self.args.show_origin, self.config, level
|
||||
)
|
||||
configs = list(self._format_config(conf, prefix))
|
||||
if configs:
|
||||
ui.write("\n".join(configs))
|
||||
return 0
|
||||
|
||||
|
||||
class CmdMachineModify(CmdMachineConfig):
|
||||
def run(self):
|
||||
from dvc.config import merge
|
||||
@@ -219,6 +235,27 @@ def add_parser(subparsers, parent_parser):
|
||||
)
|
||||
machine_default_parser.set_defaults(func=CmdMachineDefault)
|
||||
|
||||
machine_LIST_HELP = "List the configuration of one/all machines."
|
||||
machine_list_parser = machine_subparsers.add_parser(
|
||||
"list",
|
||||
parents=[parent_config_parser, parent_parser],
|
||||
description=append_doc_link(machine_LIST_HELP, "machine/list"),
|
||||
help=machine_LIST_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
machine_list_parser.add_argument(
|
||||
"--show-origin",
|
||||
default=False,
|
||||
action="store_true",
|
||||
help="Show the source file containing each config value.",
|
||||
)
|
||||
machine_list_parser.add_argument(
|
||||
"name",
|
||||
nargs="?",
|
||||
type=str,
|
||||
help="name of machine to specify",
|
||||
)
|
||||
machine_list_parser.set_defaults(func=CmdMachineList)
|
||||
machine_MODIFY_HELP = "Modify the configuration of an machine."
|
||||
machine_modify_parser = machine_subparsers.add_parser(
|
||||
"modify",
|
||||
|
||||
+4
-1
@@ -168,7 +168,10 @@ class TabularData(MutableSequence[Sequence["CellT"]]):
|
||||
def render(self, **kwargs: Any):
|
||||
from dvc.ui import ui
|
||||
|
||||
ui.table(self, headers=self.keys(), **kwargs)
|
||||
if kwargs.pop("show_csv", False):
|
||||
ui.write(self.to_csv(), end="")
|
||||
else:
|
||||
ui.table(self, headers=self.keys(), **kwargs)
|
||||
|
||||
def as_dict(
|
||||
self, cols: Iterable[str] = None
|
||||
|
||||
+5
-2
@@ -76,8 +76,10 @@ class Config(dict):
|
||||
APPNAME = "dvc"
|
||||
APPAUTHOR = "iterative"
|
||||
|
||||
SYSTEM_LEVELS = ("system", "global")
|
||||
REPO_LEVELS = ("repo", "local")
|
||||
# In the order they shadow each other
|
||||
LEVELS = ("system", "global", "repo", "local")
|
||||
LEVELS = SYSTEM_LEVELS + REPO_LEVELS
|
||||
|
||||
CONFIG = "config"
|
||||
CONFIG_LOCAL = "config.local"
|
||||
@@ -263,6 +265,7 @@ class Config(dict):
|
||||
"key_path": func,
|
||||
}
|
||||
},
|
||||
"machine": {str: {"startup_script": func}},
|
||||
}
|
||||
return Schema(dirs_schema, extra=ALLOW_EXTRA)(conf)
|
||||
|
||||
@@ -285,7 +288,7 @@ class Config(dict):
|
||||
def edit(self, level=None, validate=True):
|
||||
# NOTE: we write to repo config by default, same as git config
|
||||
level = level or "repo"
|
||||
if level in {"repo", "local"} and self.dvc_dir is None:
|
||||
if self.dvc_dir is None and level in self.REPO_LEVELS:
|
||||
raise ConfigError("Not inside a DVC repo")
|
||||
|
||||
conf = self.load_one(level)
|
||||
|
||||
@@ -229,6 +229,18 @@ SCHEMA = {
|
||||
"machine": {
|
||||
str: {
|
||||
"cloud": All(Lower, Choices("aws", "azure")),
|
||||
"region": All(
|
||||
Lower, Choices("us-west", "us-east", "eu-west", "eu-north")
|
||||
),
|
||||
"image": str,
|
||||
"name": str,
|
||||
"spot": Bool,
|
||||
"spot_price": Coerce(float),
|
||||
"instance_hdd_size": Coerce(int),
|
||||
"instance_type": Lower,
|
||||
"instance_gpu": Lower,
|
||||
"ssh_private": str,
|
||||
"startup_script": str,
|
||||
},
|
||||
},
|
||||
# section for experimental features
|
||||
|
||||
+2
-2
@@ -11,7 +11,7 @@ from dvc.path_info import CloudURLInfo
|
||||
from dvc.scheme import Schemes
|
||||
from dvc.utils import format_link
|
||||
|
||||
from .fsspec_wrapper import ObjectFSWrapper
|
||||
from .fsspec_wrapper import CallbackMixin, ObjectFSWrapper
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
_DEFAULT_CREDS_STEPS = (
|
||||
@@ -39,7 +39,7 @@ def _az_config():
|
||||
|
||||
|
||||
# pylint:disable=abstract-method
|
||||
class AzureFileSystem(ObjectFSWrapper):
|
||||
class AzureFileSystem(CallbackMixin, ObjectFSWrapper):
|
||||
scheme = Schemes.AZURE
|
||||
PATH_CLS = CloudURLInfo
|
||||
PARAM_CHECKSUM = "etag"
|
||||
|
||||
+127
-79
@@ -1,12 +1,18 @@
|
||||
import contextlib
|
||||
import logging
|
||||
import os
|
||||
from concurrent.futures import ThreadPoolExecutor, as_completed
|
||||
from functools import partial, partialmethod
|
||||
from functools import partialmethod
|
||||
from multiprocessing import cpu_count
|
||||
from typing import Any, ClassVar, Dict, FrozenSet, Optional
|
||||
|
||||
from funcy import cached_property
|
||||
from tqdm.utils import CallbackIOWrapper
|
||||
|
||||
from dvc.exceptions import DvcException
|
||||
from dvc.path_info import URLInfo
|
||||
from dvc.progress import Tqdm
|
||||
from dvc.progress import DEFAULT_CALLBACK, FsspecCallback
|
||||
from dvc.ui import ui
|
||||
from dvc.utils import tmp_fname
|
||||
from dvc.utils.fs import makedirs, move
|
||||
|
||||
@@ -217,43 +223,64 @@ class BaseFileSystem:
|
||||
return False
|
||||
return hash_.endswith(cls.CHECKSUM_DIR_SUFFIX)
|
||||
|
||||
def upload(self, from_info, to_info, name=None, no_progress_bar=False):
|
||||
if not hasattr(self, "_upload"):
|
||||
raise RemoteActionNotImplemented("upload", self.scheme)
|
||||
@cached_property
|
||||
def _local_fs(self):
|
||||
from dvc.fs import LocalFileSystem
|
||||
|
||||
return LocalFileSystem()
|
||||
|
||||
def upload(
|
||||
self,
|
||||
from_info,
|
||||
to_info,
|
||||
total=None,
|
||||
desc=None,
|
||||
callback=None,
|
||||
no_progress_bar=False,
|
||||
**pbar_args,
|
||||
):
|
||||
is_file_obj = hasattr(from_info, "read")
|
||||
method = "upload_fobj" if is_file_obj else "put_file"
|
||||
if not hasattr(self, method):
|
||||
raise RemoteActionNotImplemented(method, self.scheme)
|
||||
|
||||
if to_info.scheme != self.scheme:
|
||||
raise NotImplementedError
|
||||
|
||||
if from_info.scheme != "local":
|
||||
raise NotImplementedError
|
||||
if not is_file_obj:
|
||||
desc = desc or from_info.name
|
||||
|
||||
logger.debug("Uploading '%s' to '%s'", from_info, to_info)
|
||||
stack = contextlib.ExitStack()
|
||||
if not callback:
|
||||
pbar = ui.progress(
|
||||
desc=desc,
|
||||
disable=no_progress_bar,
|
||||
bytes=True,
|
||||
total=total or -1,
|
||||
**pbar_args,
|
||||
)
|
||||
stack.enter_context(pbar)
|
||||
callback = pbar.as_callback(self._local_fs, from_info)
|
||||
if total:
|
||||
callback.set_size(total)
|
||||
|
||||
name = name or from_info.name
|
||||
with stack:
|
||||
if is_file_obj:
|
||||
wrapped = CallbackIOWrapper(
|
||||
callback.relative_update, from_info
|
||||
)
|
||||
# `size` is used to provide hints to the WebdavFileSystem
|
||||
# for legacy servers.
|
||||
# pylint: disable=no-member
|
||||
return self.upload_fobj(wrapped, to_info, size=total)
|
||||
|
||||
self._upload( # noqa, pylint: disable=no-member
|
||||
from_info.fspath,
|
||||
to_info,
|
||||
name=name,
|
||||
no_progress_bar=no_progress_bar,
|
||||
)
|
||||
if from_info.scheme != "local":
|
||||
raise NotImplementedError
|
||||
|
||||
def upload_fobj(
|
||||
self, fobj, to_info, no_progress_bar=False, size=None, **pbar_args
|
||||
):
|
||||
if not hasattr(self, "_upload_fobj"):
|
||||
raise RemoteActionNotImplemented("upload_fobj", self.scheme)
|
||||
|
||||
with Tqdm.wrapattr(
|
||||
fobj,
|
||||
"read",
|
||||
disable=no_progress_bar,
|
||||
bytes=True,
|
||||
total=size,
|
||||
**pbar_args,
|
||||
) as wrapped:
|
||||
self._upload_fobj( # pylint: disable=no-member
|
||||
wrapped, to_info, size=size
|
||||
logger.debug("Uploading '%s' to '%s'", from_info, to_info)
|
||||
# pylint: disable=no-member
|
||||
return self.put_file(
|
||||
os.fspath(from_info), to_info, callback=callback
|
||||
)
|
||||
|
||||
def download(
|
||||
@@ -261,84 +288,105 @@ class BaseFileSystem:
|
||||
from_info,
|
||||
to_info,
|
||||
name=None,
|
||||
callback=None,
|
||||
no_progress_bar=False,
|
||||
jobs=None,
|
||||
_only_file=False,
|
||||
**kwargs,
|
||||
):
|
||||
if not hasattr(self, "_download"):
|
||||
raise RemoteActionNotImplemented("download", self.scheme)
|
||||
if not hasattr(self, "get_file"):
|
||||
raise RemoteActionNotImplemented("get_file", self.scheme)
|
||||
|
||||
if from_info.scheme != self.scheme:
|
||||
raise NotImplementedError
|
||||
|
||||
if to_info.scheme == self.scheme != "local":
|
||||
self.copy(from_info, to_info)
|
||||
return 0
|
||||
|
||||
if to_info.scheme != "local":
|
||||
raise NotImplementedError
|
||||
|
||||
if not _only_file and self.isdir(from_info):
|
||||
return self._download_dir(
|
||||
from_info, to_info, name, no_progress_bar, jobs, **kwargs
|
||||
download_dir = not _only_file and self.isdir(from_info)
|
||||
|
||||
desc = name or to_info.name
|
||||
stack = contextlib.ExitStack()
|
||||
if not callback:
|
||||
pbar_kwargs = {"unit": "Files"} if download_dir else {}
|
||||
pbar = ui.progress(
|
||||
total=-1,
|
||||
desc="Downloading directory" if download_dir else desc,
|
||||
bytes=not download_dir,
|
||||
disable=no_progress_bar,
|
||||
**pbar_kwargs,
|
||||
)
|
||||
return self._download_file(from_info, to_info, name, no_progress_bar)
|
||||
stack.enter_context(pbar)
|
||||
callback = pbar.as_callback(self, from_info)
|
||||
|
||||
with stack:
|
||||
if download_dir:
|
||||
return self._download_dir(
|
||||
from_info, to_info, callback=callback, jobs=jobs, **kwargs
|
||||
)
|
||||
return self._download_file(from_info, to_info, callback=callback)
|
||||
|
||||
download_file = partialmethod(download, _only_file=True)
|
||||
|
||||
def _download_dir(
|
||||
self, from_info, to_info, name, no_progress_bar, jobs, **kwargs
|
||||
self,
|
||||
from_info,
|
||||
to_info,
|
||||
callback=DEFAULT_CALLBACK,
|
||||
jobs=None,
|
||||
**kwargs,
|
||||
):
|
||||
from_infos = list(self.walk_files(from_info, **kwargs))
|
||||
if not from_infos:
|
||||
makedirs(to_info, exist_ok=True)
|
||||
return None
|
||||
|
||||
to_infos = (
|
||||
to_info / info.relative_to(from_info) for info in from_infos
|
||||
)
|
||||
callback.set_size(len(from_infos))
|
||||
|
||||
with Tqdm(
|
||||
total=len(from_infos),
|
||||
desc="Downloading directory",
|
||||
unit="Files",
|
||||
disable=no_progress_bar,
|
||||
) as pbar:
|
||||
download_files = pbar.wrap_fn(
|
||||
partial(self._download_file, name=name, no_progress_bar=True)
|
||||
)
|
||||
max_workers = jobs or self.jobs
|
||||
with ThreadPoolExecutor(max_workers=max_workers) as executor:
|
||||
futures = [
|
||||
executor.submit(download_files, from_info, to_info)
|
||||
for from_info, to_info in zip(from_infos, to_infos)
|
||||
]
|
||||
download_files = FsspecCallback.wrap_fn(callback, self._download_file)
|
||||
max_workers = jobs or self.jobs
|
||||
with ThreadPoolExecutor(max_workers=max_workers) as executor:
|
||||
futures = [
|
||||
executor.submit(download_files, from_info, to_info)
|
||||
for from_info, to_info in zip(from_infos, to_infos)
|
||||
]
|
||||
|
||||
# NOTE: unlike pulling/fetching cache, where we need to
|
||||
# download everything we can, not raising an error here might
|
||||
# turn very ugly, as the user might think that he has
|
||||
# downloaded a complete directory, while having a partial one,
|
||||
# which might cause unexpected results in his pipeline.
|
||||
for future in as_completed(futures):
|
||||
# NOTE: executor won't let us raise until all futures that
|
||||
# it has are finished, so we need to cancel them ourselves
|
||||
# before re-raising.
|
||||
exc = future.exception()
|
||||
if exc:
|
||||
for entry in futures:
|
||||
entry.cancel()
|
||||
raise exc
|
||||
# NOTE: unlike pulling/fetching cache, where we need to
|
||||
# download everything we can, not raising an error here might
|
||||
# turn very ugly, as the user might think that he has
|
||||
# downloaded a complete directory, while having a partial one,
|
||||
# which might cause unexpected results in his pipeline.
|
||||
for future in as_completed(futures):
|
||||
# NOTE: executor won't let us raise until all futures that
|
||||
# it has are finished, so we need to cancel them ourselves
|
||||
# before re-raising.
|
||||
exc = future.exception()
|
||||
if exc:
|
||||
for entry in futures:
|
||||
entry.cancel()
|
||||
raise exc
|
||||
|
||||
def _download_file(self, from_info, to_info, name, no_progress_bar):
|
||||
def _download_file(
|
||||
self,
|
||||
from_info,
|
||||
to_info,
|
||||
callback=DEFAULT_CALLBACK,
|
||||
):
|
||||
makedirs(to_info.parent, exist_ok=True)
|
||||
|
||||
logger.debug("Downloading '%s' to '%s'", from_info, to_info)
|
||||
name = name or to_info.name
|
||||
|
||||
tmp_file = tmp_fname(to_info)
|
||||
|
||||
self._download( # noqa, pylint: disable=no-member
|
||||
from_info, tmp_file, name=name, no_progress_bar=no_progress_bar
|
||||
)
|
||||
logger.debug("Downloading '%s' to '%s'", from_info, to_info)
|
||||
try:
|
||||
# noqa, pylint: disable=no-member
|
||||
self.get_file(from_info, tmp_file, callback=callback)
|
||||
except Exception: # pylint: disable=broad-except
|
||||
# do we need to rollback makedirs for previously not-existing
|
||||
# directories?
|
||||
with contextlib.suppress(FileNotFoundError):
|
||||
os.unlink(tmp_file)
|
||||
raise
|
||||
|
||||
move(tmp_file, to_info)
|
||||
|
||||
+6
-3
@@ -6,6 +6,7 @@ from dvc.exceptions import OutputNotFoundError
|
||||
from dvc.path_info import PathInfo
|
||||
from dvc.utils import relpath
|
||||
|
||||
from ..progress import DEFAULT_CALLBACK
|
||||
from ._metadata import Metadata
|
||||
from .base import BaseFileSystem
|
||||
|
||||
@@ -256,10 +257,12 @@ class DvcFileSystem(BaseFileSystem): # pylint:disable=abstract-method
|
||||
|
||||
return ret
|
||||
|
||||
def _download(self, from_info, to_file, **kwargs):
|
||||
def get_file(
|
||||
self, from_info, to_file, callback=DEFAULT_CALLBACK, **kwargs
|
||||
):
|
||||
fs, path = self._get_fs_path(from_info)
|
||||
fs._download( # pylint: disable=protected-access
|
||||
path, to_file, **kwargs
|
||||
fs.get_file( # pylint: disable=protected-access
|
||||
path, to_file, callback=callback, **kwargs
|
||||
)
|
||||
|
||||
def checksum(self, path_info):
|
||||
|
||||
+69
-65
@@ -3,8 +3,9 @@ import shutil
|
||||
from functools import lru_cache
|
||||
|
||||
from funcy import cached_property
|
||||
from tqdm.utils import CallbackIOWrapper
|
||||
|
||||
from dvc.progress import Tqdm
|
||||
from dvc.progress import DEFAULT_CALLBACK
|
||||
|
||||
from .base import BaseFileSystem
|
||||
from .local import LocalFileSystem
|
||||
@@ -130,43 +131,26 @@ class FSSpecWrapper(BaseFileSystem):
|
||||
self._with_bucket(path_info), exist_ok=kwargs.pop("exist_ok", True)
|
||||
)
|
||||
|
||||
def _upload_fobj(self, fobj, to_info, size=None):
|
||||
def put_file(
|
||||
self, from_file, to_info, callback=DEFAULT_CALLBACK, **kwargs
|
||||
):
|
||||
self.fs.put_file(
|
||||
from_file, self._with_bucket(to_info), callback=callback, **kwargs
|
||||
)
|
||||
self.fs.invalidate_cache(self._with_bucket(to_info.parent))
|
||||
|
||||
def get_file(
|
||||
self, from_info, to_info, callback=DEFAULT_CALLBACK, **kwargs
|
||||
):
|
||||
self.fs.get_file(
|
||||
self._with_bucket(from_info), to_info, callback=callback, **kwargs
|
||||
)
|
||||
|
||||
def upload_fobj(self, fobj, to_info, **kwargs):
|
||||
self.makedirs(to_info.parent)
|
||||
with self.open(to_info, "wb") as fdest:
|
||||
shutil.copyfileobj(fobj, fdest, length=fdest.blocksize)
|
||||
|
||||
def _upload(
|
||||
self, from_file, to_info, name=None, no_progress_bar=False, **kwargs
|
||||
):
|
||||
self.makedirs(to_info.parent)
|
||||
size = os.path.getsize(from_file)
|
||||
with open(from_file, "rb") as fobj:
|
||||
self.upload_fobj(
|
||||
fobj,
|
||||
to_info,
|
||||
size=size,
|
||||
desc=name,
|
||||
no_progress_bar=no_progress_bar,
|
||||
)
|
||||
self.fs.invalidate_cache(self._with_bucket(to_info.parent))
|
||||
|
||||
def _download(
|
||||
self, from_info, to_file, name=None, no_progress_bar=False, **pbar_args
|
||||
):
|
||||
total = self.getsize(self._with_bucket(from_info))
|
||||
with self.open(from_info, "rb") as fobj:
|
||||
with Tqdm.wrapattr(
|
||||
fobj,
|
||||
"read",
|
||||
desc=name,
|
||||
disable=no_progress_bar,
|
||||
bytes=True,
|
||||
total=total,
|
||||
**pbar_args,
|
||||
) as wrapped:
|
||||
with open(to_file, "wb") as fdest:
|
||||
shutil.copyfileobj(wrapped, fdest, length=fobj.blocksize)
|
||||
|
||||
|
||||
# pylint: disable=abstract-method
|
||||
class ObjectFSWrapper(FSSpecWrapper):
|
||||
@@ -233,42 +217,62 @@ class ObjectFSWrapper(FSSpecWrapper):
|
||||
yield from self._strip_buckets(files, detail=detail)
|
||||
|
||||
|
||||
# pylint: disable=arguments-differ
|
||||
class NoDirectoriesMixin:
|
||||
def isdir(self, *args, **kwargs):
|
||||
return False
|
||||
|
||||
def isfile(self, *args, **kwargs):
|
||||
return True
|
||||
|
||||
def find(self, *args, **kwargs):
|
||||
raise NotImplementedError
|
||||
|
||||
def walk(self, *args, **kwargs):
|
||||
raise NotImplementedError
|
||||
|
||||
def walk_files(self, *args, **kwargs):
|
||||
raise NotImplementedError
|
||||
|
||||
def ls(self, *args, **kwargs):
|
||||
raise NotImplementedError
|
||||
|
||||
|
||||
_LOCAL_FS = LocalFileSystem()
|
||||
|
||||
|
||||
class CallbackMixin:
|
||||
"""Use the native ``get_file()``/``put_file()`` APIs
|
||||
if the target filesystem supports callbacks."""
|
||||
"""Provides callback support for the filesystem that don't support yet."""
|
||||
|
||||
def _upload(
|
||||
self, from_file, to_info, name=None, no_progress_bar=False, **pbar_args
|
||||
def put_file(
|
||||
self,
|
||||
from_file,
|
||||
to_info,
|
||||
callback=DEFAULT_CALLBACK,
|
||||
**kwargs,
|
||||
):
|
||||
with Tqdm(
|
||||
desc=name,
|
||||
disable=no_progress_bar,
|
||||
bytes=True,
|
||||
total=-1,
|
||||
**pbar_args,
|
||||
) as pbar:
|
||||
self.fs.put_file(
|
||||
os.fspath(from_file),
|
||||
self._with_bucket(to_info),
|
||||
callback=pbar.as_callback(_LOCAL_FS, from_file),
|
||||
)
|
||||
self.fs.invalidate_cache(self._with_bucket(to_info.parent))
|
||||
"""Add compatibility support for Callback."""
|
||||
# pylint: disable=protected-access
|
||||
self.makedirs(to_info.parent)
|
||||
size = os.path.getsize(from_file)
|
||||
with open(from_file, "rb") as fobj:
|
||||
callback.set_size(size)
|
||||
wrapped = CallbackIOWrapper(callback.relative_update, fobj)
|
||||
self.upload_fobj(wrapped, to_info)
|
||||
self.fs.invalidate_cache(self._with_bucket(to_info.parent))
|
||||
|
||||
def _download(
|
||||
self, from_info, to_file, name=None, no_progress_bar=False, **pbar_args
|
||||
def get_file(
|
||||
self,
|
||||
from_info,
|
||||
to_info,
|
||||
callback=DEFAULT_CALLBACK,
|
||||
**kwargs,
|
||||
):
|
||||
with Tqdm(
|
||||
desc=name,
|
||||
disable=no_progress_bar,
|
||||
bytes=True,
|
||||
total=-1,
|
||||
**pbar_args,
|
||||
) as pbar:
|
||||
self.fs.get_file(
|
||||
self._with_bucket(from_info),
|
||||
os.fspath(to_file),
|
||||
callback=pbar.as_callback(self, from_info),
|
||||
)
|
||||
# pylint: disable=protected-access
|
||||
total: int = self.getsize(from_info)
|
||||
if total:
|
||||
callback.set_size(total)
|
||||
|
||||
with self.open(from_info, "rb") as fobj, open(to_info, "wb") as fdest:
|
||||
wrapped = CallbackIOWrapper(callback.relative_update, fobj)
|
||||
shutil.copyfileobj(wrapped, fdest, length=fobj.blocksize)
|
||||
|
||||
+13
-6
@@ -12,7 +12,7 @@ from dvc.path_info import CloudURLInfo
|
||||
from dvc.scheme import Schemes
|
||||
from dvc.utils import format_link, tmp_fname
|
||||
|
||||
from .fsspec_wrapper import CallbackMixin, FSSpecWrapper
|
||||
from .fsspec_wrapper import FSSpecWrapper
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
FOLDER_MIME_TYPE = "application/vnd.google-apps.folder"
|
||||
@@ -79,9 +79,7 @@ class GDriveURLInfo(CloudURLInfo):
|
||||
self._spath = re.sub("/{2,}", "/", self._spath.rstrip("/"))
|
||||
|
||||
|
||||
class GDriveFileSystem(
|
||||
CallbackMixin, FSSpecWrapper
|
||||
): # pylint:disable=abstract-method
|
||||
class GDriveFileSystem(FSSpecWrapper): # pylint:disable=abstract-method
|
||||
scheme = Schemes.GDRIVE
|
||||
PATH_CLS = GDriveURLInfo
|
||||
PARAM_CHECKSUM = "checksum"
|
||||
@@ -298,7 +296,16 @@ class GDriveFileSystem(
|
||||
|
||||
return super()._with_bucket(path)
|
||||
|
||||
def _upload_fobj(self, fobj, to_info, size: int = None):
|
||||
def _strip_bucket(self, entry):
|
||||
try:
|
||||
bucket, path = entry.split("/", 1)
|
||||
except ValueError:
|
||||
# If there is no path attached, only returns
|
||||
# the bucket (top-level).
|
||||
bucket, path = entry, None
|
||||
return path or bucket
|
||||
|
||||
def upload_fobj(self, fobj, to_info, **kwargs):
|
||||
rpath = self._with_bucket(to_info)
|
||||
self.makedirs(os.path.dirname(rpath))
|
||||
return self.fs.upload_fobj(fobj, rpath, size=size)
|
||||
return self.fs.upload_fobj(fobj, rpath, **kwargs)
|
||||
|
||||
+14
-9
@@ -1,8 +1,11 @@
|
||||
import errno
|
||||
import os
|
||||
|
||||
from tqdm.utils import CallbackIOWrapper
|
||||
|
||||
from dvc.utils import is_exec, relpath
|
||||
|
||||
from ..progress import DEFAULT_CALLBACK
|
||||
from .base import BaseFileSystem
|
||||
|
||||
|
||||
@@ -116,16 +119,18 @@ class GitFileSystem(BaseFileSystem): # pylint:disable=abstract-method
|
||||
# NOTE: os.path.join is ~5.5 times slower
|
||||
yield f"{root}{os.sep}{file}"
|
||||
|
||||
def _download(
|
||||
self, from_info, to_file, name=None, no_progress_bar=False, **kwargs
|
||||
def get_file(
|
||||
self, from_info, to_file, callback=DEFAULT_CALLBACK, **kwargs
|
||||
):
|
||||
import shutil
|
||||
|
||||
from dvc.progress import Tqdm
|
||||
total = self.getsize(from_info)
|
||||
if total:
|
||||
callback.set_size(total)
|
||||
|
||||
with open(to_file, "wb+") as to_fobj:
|
||||
with Tqdm.wrapattr(
|
||||
to_fobj, "write", desc=name, disable=no_progress_bar
|
||||
) as wrapped:
|
||||
with self.open(from_info, "rb", **kwargs) as from_fobj:
|
||||
shutil.copyfileobj(from_fobj, wrapped)
|
||||
with self.open(from_info, "rb", **kwargs) as from_fobj:
|
||||
with open(to_file, "wb+") as to_fobj:
|
||||
wrapped = CallbackIOWrapper(
|
||||
callback.relative_update, from_fobj
|
||||
)
|
||||
shutil.copyfileobj(wrapped, to_fobj)
|
||||
|
||||
+4
-4
@@ -6,11 +6,11 @@ from funcy import cached_property, wrap_prop
|
||||
from dvc.path_info import CloudURLInfo
|
||||
from dvc.scheme import Schemes
|
||||
|
||||
from .fsspec_wrapper import ObjectFSWrapper
|
||||
|
||||
|
||||
# pylint:disable=abstract-method
|
||||
class GSFileSystem(ObjectFSWrapper):
|
||||
from .fsspec_wrapper import CallbackMixin, ObjectFSWrapper
|
||||
|
||||
|
||||
class GSFileSystem(CallbackMixin, ObjectFSWrapper):
|
||||
scheme = Schemes.GS
|
||||
PATH_CLS = CloudURLInfo
|
||||
REQUIRES = {"gcsfs": "gcsfs"}
|
||||
|
||||
+23
-26
@@ -8,8 +8,10 @@ import subprocess
|
||||
from collections import deque
|
||||
from contextlib import closing, contextmanager
|
||||
|
||||
from tqdm.utils import CallbackIOWrapper
|
||||
|
||||
from dvc.hash_info import HashInfo
|
||||
from dvc.progress import Tqdm
|
||||
from dvc.progress import DEFAULT_CALLBACK
|
||||
from dvc.scheme import Schemes
|
||||
from dvc.utils import fix_env, tmp_fname
|
||||
|
||||
@@ -244,42 +246,37 @@ class HDFSFileSystem(BaseFileSystem):
|
||||
size=self.getsize(path_info),
|
||||
)
|
||||
|
||||
def _upload_fobj(self, fobj, to_info, **kwargs):
|
||||
def upload_fobj(self, fobj, to_info, **kwargs):
|
||||
with self.hdfs(to_info) as hdfs:
|
||||
with hdfs.open_output_stream(to_info.path) as fdest:
|
||||
shutil.copyfileobj(fobj, fdest, self.BLOCK_SIZE)
|
||||
|
||||
def _upload(
|
||||
self, from_file, to_info, name=None, no_progress_bar=False, **_kwargs
|
||||
def put_file(
|
||||
self, from_file, to_info, callback=DEFAULT_CALLBACK, **kwargs
|
||||
):
|
||||
with self.hdfs(to_info) as hdfs:
|
||||
hdfs.create_dir(to_info.parent.path)
|
||||
|
||||
tmp_file = tmp_fname(to_info.path)
|
||||
total = os.path.getsize(from_file)
|
||||
total: int = os.path.getsize(from_file)
|
||||
callback.set_size(total)
|
||||
|
||||
with open(from_file, "rb") as fobj:
|
||||
with Tqdm.wrapattr(
|
||||
fobj,
|
||||
"read",
|
||||
desc=name,
|
||||
total=total,
|
||||
disable=no_progress_bar,
|
||||
) as wrapped:
|
||||
with hdfs.open_output_stream(tmp_file) as sobj:
|
||||
shutil.copyfileobj(wrapped, sobj, self.BLOCK_SIZE)
|
||||
wrapped = CallbackIOWrapper(callback.relative_update, fobj)
|
||||
with hdfs.open_output_stream(tmp_file) as sobj:
|
||||
shutil.copyfileobj(wrapped, sobj, self.BLOCK_SIZE)
|
||||
hdfs.move(tmp_file, to_info.path)
|
||||
|
||||
def _download(
|
||||
self, from_info, to_file, name=None, no_progress_bar=False, **_kwargs
|
||||
def get_file(
|
||||
self, from_info, to_file, callback=DEFAULT_CALLBACK, **kwargs
|
||||
):
|
||||
with self.hdfs(from_info) as hdfs:
|
||||
file_info = hdfs.get_file_info(from_info.path)
|
||||
total = file_info.size
|
||||
with open(to_file, "wb+") as fobj:
|
||||
with Tqdm.wrapattr(
|
||||
fobj,
|
||||
"write",
|
||||
desc=name,
|
||||
total=total,
|
||||
disable=no_progress_bar,
|
||||
) as wrapped:
|
||||
with hdfs.open_input_stream(from_info.path) as sobj:
|
||||
shutil.copyfileobj(sobj, wrapped, self.BLOCK_SIZE)
|
||||
if total:
|
||||
callback.set_size(total)
|
||||
|
||||
with hdfs.open_input_stream(from_info.path) as sobj:
|
||||
with open(to_file, "wb+") as fobj:
|
||||
wrapped = CallbackIOWrapper(callback.relative_update, sobj)
|
||||
shutil.copyfileobj(wrapped, fobj, self.BLOCK_SIZE)
|
||||
|
||||
+93
-169
@@ -1,20 +1,12 @@
|
||||
import logging
|
||||
import os.path
|
||||
import threading
|
||||
from typing import Optional
|
||||
from urllib.parse import urlparse
|
||||
|
||||
from funcy import cached_property, memoize, wrap_prop, wrap_with
|
||||
from funcy import cached_property, memoize, wrap_with
|
||||
|
||||
from dvc import prompt
|
||||
from dvc.exceptions import DvcException, HTTPError
|
||||
from dvc.path_info import HTTPURLInfo
|
||||
from dvc.progress import Tqdm
|
||||
from dvc.scheme import Schemes
|
||||
|
||||
from .base import BaseFileSystem
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
from .fsspec_wrapper import FSSpecWrapper, NoDirectoriesMixin
|
||||
|
||||
|
||||
@wrap_with(threading.Lock())
|
||||
@@ -26,179 +18,111 @@ def ask_password(host, user):
|
||||
)
|
||||
|
||||
|
||||
class HTTPFileSystem(BaseFileSystem): # pylint:disable=abstract-method
|
||||
def make_context(ssl_verify):
|
||||
if isinstance(ssl_verify, bool) or ssl_verify is None:
|
||||
return ssl_verify
|
||||
|
||||
# If this is a path, then we will create an
|
||||
# SSL context for it, and load the given certificate.
|
||||
import ssl
|
||||
|
||||
context = ssl.create_default_context()
|
||||
context.load_verify_locations(ssl_verify)
|
||||
return context
|
||||
|
||||
|
||||
# pylint: disable=abstract-method
|
||||
class HTTPFileSystem(NoDirectoriesMixin, FSSpecWrapper):
|
||||
scheme = Schemes.HTTP
|
||||
PATH_CLS = HTTPURLInfo
|
||||
PARAM_CHECKSUM = "etag"
|
||||
PARAM_CHECKSUM = "checksum"
|
||||
REQUIRES = {"aiohttp": "aiohttp", "aiohttp-retry": "aiohttp_retry"}
|
||||
CAN_TRAVERSE = False
|
||||
REQUIRES = {"requests": "requests"}
|
||||
|
||||
SESSION_RETRIES = 5
|
||||
SESSION_BACKOFF_FACTOR = 0.1
|
||||
REQUEST_TIMEOUT = 60
|
||||
CHUNK_SIZE = 2 ** 16
|
||||
|
||||
def __init__(self, **config):
|
||||
super().__init__(**config)
|
||||
def _prepare_credentials(self, **config):
|
||||
import aiohttp
|
||||
from fsspec.asyn import fsspec_loop
|
||||
|
||||
self.user = config.get("user", None)
|
||||
from dvc.config import ConfigError
|
||||
|
||||
self.auth = config.get("auth", None)
|
||||
self.custom_auth_header = config.get("custom_auth_header", None)
|
||||
self.password = config.get("password", None)
|
||||
self.ask_password = config.get("ask_password", False)
|
||||
self.headers = {}
|
||||
self.ssl_verify = config.get("ssl_verify", True)
|
||||
self.method = config.get("method", "POST")
|
||||
credentials = {}
|
||||
client_kwargs = credentials.setdefault("client_kwargs", {})
|
||||
|
||||
def _auth_method(self, url):
|
||||
from requests.auth import HTTPBasicAuth, HTTPDigestAuth
|
||||
if config.get("auth"):
|
||||
user = config.get("user")
|
||||
password = config.get("password")
|
||||
custom_auth_header = config.get("custom_auth_header")
|
||||
|
||||
if self.auth:
|
||||
if self.ask_password and self.password is None:
|
||||
self.password = ask_password(urlparse(url).hostname, self.user)
|
||||
if self.auth == "basic":
|
||||
return HTTPBasicAuth(self.user, self.password)
|
||||
if self.auth == "digest":
|
||||
return HTTPDigestAuth(self.user, self.password)
|
||||
if self.auth == "custom" and self.custom_auth_header:
|
||||
self.headers.update({self.custom_auth_header: self.password})
|
||||
return None
|
||||
if password is None and config.get("ask_password"):
|
||||
password = ask_password(config.get("url"), user or "custom")
|
||||
|
||||
auth_method = config["auth"]
|
||||
if auth_method == "basic":
|
||||
if user is None or password is None:
|
||||
raise ConfigError(
|
||||
"HTTP 'basic' authentication require both "
|
||||
"'user' and 'password'"
|
||||
)
|
||||
|
||||
client_kwargs["auth"] = aiohttp.BasicAuth(user, password)
|
||||
elif auth_method == "custom":
|
||||
if custom_auth_header is None or password is None:
|
||||
raise ConfigError(
|
||||
"HTTP 'custom' authentication require both "
|
||||
"'custom_auth_header' and 'password'"
|
||||
)
|
||||
credentials["headers"] = {custom_auth_header: password}
|
||||
else:
|
||||
raise NotImplementedError(
|
||||
f"Auth method {auth_method!r} is not supported."
|
||||
)
|
||||
|
||||
if "ssl_verify" in config:
|
||||
with fsspec_loop():
|
||||
client_kwargs["connector"] = aiohttp.TCPConnector(
|
||||
ssl=make_context(config["ssl_verify"])
|
||||
)
|
||||
|
||||
credentials["get_client"] = self.get_client
|
||||
self.upload_method = config.get("method", "POST")
|
||||
return credentials
|
||||
|
||||
async def get_client(self, **kwargs):
|
||||
import aiohttp
|
||||
from aiohttp_retry import ExponentialRetry, RetryClient
|
||||
|
||||
kwargs["retry_options"] = ExponentialRetry(
|
||||
attempts=self.SESSION_RETRIES,
|
||||
factor=self.SESSION_BACKOFF_FACTOR,
|
||||
max_timeout=self.REQUEST_TIMEOUT,
|
||||
)
|
||||
|
||||
# The default timeout for the aiohttp is 300 seconds
|
||||
# which is too low for DVC's interactions (especially
|
||||
# on the read) when dealing with large data blobs. We
|
||||
# unlimit the total time to read, and only limit the
|
||||
# time that is spent when connecting to the remote server.
|
||||
kwargs["timeout"] = aiohttp.ClientTimeout(
|
||||
total=None,
|
||||
connect=self.REQUEST_TIMEOUT,
|
||||
sock_connect=self.REQUEST_TIMEOUT,
|
||||
sock_read=None,
|
||||
)
|
||||
|
||||
return RetryClient(**kwargs)
|
||||
|
||||
@wrap_prop(threading.Lock())
|
||||
@cached_property
|
||||
def _session(self):
|
||||
import requests
|
||||
from requests.adapters import HTTPAdapter
|
||||
from urllib3.util.retry import Retry
|
||||
|
||||
session = requests.Session()
|
||||
|
||||
session.verify = self.ssl_verify
|
||||
|
||||
retries = Retry(
|
||||
total=self.SESSION_RETRIES,
|
||||
backoff_factor=self.SESSION_BACKOFF_FACTOR,
|
||||
def fs(self):
|
||||
from fsspec.implementations.http import (
|
||||
HTTPFileSystem as _HTTPFileSystem,
|
||||
)
|
||||
|
||||
session.mount("http://", HTTPAdapter(max_retries=retries))
|
||||
session.mount("https://", HTTPAdapter(max_retries=retries))
|
||||
return _HTTPFileSystem(**self.fs_args)
|
||||
|
||||
return session
|
||||
|
||||
def request(self, method, url, **kwargs):
|
||||
import requests
|
||||
|
||||
kwargs.setdefault("allow_redirects", True)
|
||||
kwargs.setdefault("timeout", self.REQUEST_TIMEOUT)
|
||||
|
||||
try:
|
||||
res = self._session.request(
|
||||
method,
|
||||
url,
|
||||
auth=self._auth_method(url),
|
||||
headers=self.headers,
|
||||
**kwargs,
|
||||
)
|
||||
|
||||
redirect_no_location = (
|
||||
kwargs["allow_redirects"]
|
||||
and res.status_code in (301, 302)
|
||||
and "location" not in res.headers
|
||||
)
|
||||
|
||||
if redirect_no_location:
|
||||
# AWS s3 doesn't like to add a location header to its redirects
|
||||
# from https://s3.amazonaws.com/<bucket name>/* type URLs.
|
||||
# This should be treated as an error
|
||||
raise requests.exceptions.RequestException
|
||||
|
||||
return res
|
||||
|
||||
except requests.exceptions.RequestException:
|
||||
raise DvcException(f"could not perform a {method} request")
|
||||
|
||||
def _head(self, url):
|
||||
response = self.request("HEAD", url)
|
||||
if response.ok:
|
||||
return response
|
||||
|
||||
# Sometimes servers are configured to forbid HEAD requests
|
||||
# Context: https://github.com/iterative/dvc/issues/4131
|
||||
with self.request("GET", url, stream=True) as r:
|
||||
if r.ok:
|
||||
return r
|
||||
|
||||
return response
|
||||
|
||||
def exists(self, path_info) -> bool:
|
||||
res = self._head(path_info.url)
|
||||
if res.status_code == 404:
|
||||
return False
|
||||
if bool(res):
|
||||
return True
|
||||
raise HTTPError(res.status_code, res.reason)
|
||||
|
||||
def info(self, path_info):
|
||||
resp = self._head(path_info.url)
|
||||
etag = resp.headers.get("ETag") or resp.headers.get("Content-MD5")
|
||||
size = self._content_length(resp)
|
||||
return {"etag": etag, "size": size, "type": "file"}
|
||||
|
||||
def _upload_fobj(self, fobj, to_info, **kwargs):
|
||||
def chunks(fobj):
|
||||
while True:
|
||||
chunk = fobj.read(self.CHUNK_SIZE)
|
||||
if not chunk:
|
||||
break
|
||||
yield chunk
|
||||
|
||||
response = self.request(self.method, to_info.url, data=chunks(fobj))
|
||||
if response.status_code not in (200, 201):
|
||||
raise HTTPError(response.status_code, response.reason)
|
||||
|
||||
def _download(self, from_info, to_file, name=None, no_progress_bar=False):
|
||||
response = self.request("GET", from_info.url, stream=True)
|
||||
if response.status_code != 200:
|
||||
raise HTTPError(response.status_code, response.reason)
|
||||
with open(to_file, "wb") as fd:
|
||||
with Tqdm.wrapattr(
|
||||
fd,
|
||||
"write",
|
||||
total=None
|
||||
if no_progress_bar
|
||||
else self._content_length(response),
|
||||
leave=False,
|
||||
desc=from_info.url if name is None else name,
|
||||
disable=no_progress_bar,
|
||||
) as fd_wrapped:
|
||||
for chunk in response.iter_content(chunk_size=self.CHUNK_SIZE):
|
||||
fd_wrapped.write(chunk)
|
||||
|
||||
def _upload(
|
||||
self, from_file, to_info, name=None, no_progress_bar=False, **_kwargs
|
||||
):
|
||||
with open(from_file, "rb") as fobj:
|
||||
self.upload_fobj(
|
||||
fobj,
|
||||
to_info,
|
||||
size=None if no_progress_bar else os.path.getsize(from_file),
|
||||
no_progress_bar=no_progress_bar,
|
||||
desc=name or to_info.url,
|
||||
)
|
||||
|
||||
def open(self, path_info, mode: str = "r", encoding: str = None, **kwargs):
|
||||
from dvc.utils.http import open_url
|
||||
|
||||
return open_url(
|
||||
path_info.url,
|
||||
mode=mode,
|
||||
encoding=encoding,
|
||||
auth=self._auth_method(path_info),
|
||||
**kwargs,
|
||||
)
|
||||
|
||||
@staticmethod
|
||||
def _content_length(response) -> Optional[int]:
|
||||
res = response.headers.get("Content-Length")
|
||||
return int(res) if res else None
|
||||
def _entry_hook(self, entry):
|
||||
entry["checksum"] = entry.get("ETag") or entry.get("Content-MD5")
|
||||
return entry
|
||||
|
||||
+8
-13
@@ -7,6 +7,7 @@ from dvc.system import System
|
||||
from dvc.utils import is_exec, tmp_fname
|
||||
from dvc.utils.fs import copy_fobj_to_file, copyfile, makedirs, move, remove
|
||||
|
||||
from ..progress import DEFAULT_CALLBACK
|
||||
from .base import BaseFileSystem
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
@@ -108,7 +109,7 @@ class LocalFileSystem(BaseFileSystem):
|
||||
self.remove(tmp_info)
|
||||
raise
|
||||
|
||||
def _upload_fobj(self, fobj, to_info, **kwargs):
|
||||
def upload_fobj(self, fobj, to_info, **kwargs):
|
||||
self.makedirs(to_info.parent)
|
||||
tmp_info = to_info.parent / tmp_fname("")
|
||||
try:
|
||||
@@ -158,21 +159,15 @@ class LocalFileSystem(BaseFileSystem):
|
||||
def info(self, path_info):
|
||||
return self.fs.info(path_info)
|
||||
|
||||
def _upload(
|
||||
self, from_file, to_info, name=None, no_progress_bar=False, **_kwargs
|
||||
def put_file(
|
||||
self, from_file, to_info, callback=DEFAULT_CALLBACK, **kwargs
|
||||
):
|
||||
makedirs(to_info.parent, exist_ok=True)
|
||||
|
||||
tmp_file = tmp_fname(to_info)
|
||||
copyfile(
|
||||
from_file, tmp_file, name=name, no_progress_bar=no_progress_bar
|
||||
)
|
||||
copyfile(from_file, tmp_file, callback=callback)
|
||||
os.replace(tmp_file, to_info)
|
||||
|
||||
@staticmethod
|
||||
def _download(
|
||||
from_info, to_file, name=None, no_progress_bar=False, **_kwargs
|
||||
def get_file(
|
||||
self, from_info, to_file, callback=DEFAULT_CALLBACK, **kwargs
|
||||
):
|
||||
copyfile(
|
||||
from_info, to_file, no_progress_bar=no_progress_bar, name=name
|
||||
)
|
||||
copyfile(from_info, to_file, callback=callback)
|
||||
|
||||
+2
-2
@@ -7,13 +7,13 @@ from funcy import cached_property, wrap_prop
|
||||
from dvc.path_info import CloudURLInfo
|
||||
from dvc.scheme import Schemes
|
||||
|
||||
from .fsspec_wrapper import CallbackMixin, ObjectFSWrapper
|
||||
from .fsspec_wrapper import ObjectFSWrapper
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
# pylint:disable=abstract-method
|
||||
class OSSFileSystem(CallbackMixin, ObjectFSWrapper):
|
||||
class OSSFileSystem(ObjectFSWrapper):
|
||||
scheme = Schemes.OSS
|
||||
PATH_CLS = CloudURLInfo
|
||||
REQUIRES = {"ossfs": "ossfs"}
|
||||
|
||||
+8
-5
@@ -9,6 +9,7 @@ from funcy import lfilter, wrap_with
|
||||
|
||||
from dvc.path_info import PathInfo
|
||||
|
||||
from ..progress import DEFAULT_CALLBACK
|
||||
from .base import BaseFileSystem
|
||||
from .dvc import DvcFileSystem
|
||||
|
||||
@@ -448,19 +449,21 @@ class RepoFileSystem(BaseFileSystem): # pylint:disable=abstract-method
|
||||
for fname in files:
|
||||
yield PathInfo(root) / fname
|
||||
|
||||
def _download(self, from_info, to_file, **kwargs):
|
||||
def get_file(
|
||||
self, from_info, to_file, callback=DEFAULT_CALLBACK, **kwargs
|
||||
):
|
||||
fs, dvc_fs = self._get_fs_pair(from_info)
|
||||
try:
|
||||
fs._download( # pylint: disable=protected-access
|
||||
from_info, to_file, **kwargs
|
||||
fs.get_file( # pylint: disable=protected-access
|
||||
from_info, to_file, callback=callback, **kwargs
|
||||
)
|
||||
return
|
||||
except FileNotFoundError:
|
||||
if not dvc_fs:
|
||||
raise
|
||||
|
||||
dvc_fs._download( # pylint: disable=protected-access
|
||||
from_info, to_file, **kwargs
|
||||
dvc_fs.get_file( # pylint: disable=protected-access
|
||||
from_info, to_file, callback=callback, **kwargs
|
||||
)
|
||||
|
||||
def metadata(self, path):
|
||||
|
||||
+15
-28
@@ -6,7 +6,7 @@ from collections import defaultdict
|
||||
from funcy import cached_property, wrap_prop
|
||||
|
||||
from dvc.path_info import CloudURLInfo
|
||||
from dvc.progress import Tqdm
|
||||
from dvc.progress import DEFAULT_CALLBACK
|
||||
from dvc.scheme import Schemes
|
||||
|
||||
from .fsspec_wrapper import ObjectFSWrapper
|
||||
@@ -204,36 +204,23 @@ class S3FileSystem(BaseS3FileSystem): # pylint:disable=abstract-method
|
||||
return bucket.Object(path_info.path)
|
||||
|
||||
@_translate_exceptions
|
||||
def _upload(
|
||||
self, from_file, to_info, name=None, no_progress_bar=False, **pbar_args
|
||||
def put_file(
|
||||
self, from_file, to_info, callback=DEFAULT_CALLBACK, **kwargs
|
||||
):
|
||||
total = os.path.getsize(from_file)
|
||||
with Tqdm(
|
||||
disable=no_progress_bar,
|
||||
total=total,
|
||||
bytes=True,
|
||||
desc=name,
|
||||
**pbar_args,
|
||||
) as pbar:
|
||||
obj = self._get_obj(to_info)
|
||||
obj.upload_file(
|
||||
from_file,
|
||||
Callback=pbar.update,
|
||||
ExtraArgs=self.fs_args.get("s3_additional_kwargs"),
|
||||
Config=self._transfer_config,
|
||||
)
|
||||
callback.set_size(os.path.getsize(from_file))
|
||||
obj = self._get_obj(to_info)
|
||||
obj.upload_file(
|
||||
from_file,
|
||||
Callback=callback.relative_update,
|
||||
ExtraArgs=self.fs_args.get("s3_additional_kwargs"),
|
||||
Config=self._transfer_config,
|
||||
)
|
||||
self.fs.invalidate_cache(self._with_bucket(to_info.parent))
|
||||
|
||||
@_translate_exceptions
|
||||
def _download(
|
||||
self, from_info, to_file, name=None, no_progress_bar=False, **pbar_args
|
||||
def get_file(
|
||||
self, from_info, to_info, callback=DEFAULT_CALLBACK, **kwargs
|
||||
):
|
||||
obj = self._get_obj(from_info)
|
||||
with Tqdm(
|
||||
disable=no_progress_bar,
|
||||
total=obj.content_length,
|
||||
bytes=True,
|
||||
desc=name,
|
||||
**pbar_args,
|
||||
) as pbar:
|
||||
obj.download_file(to_file, Callback=pbar.update)
|
||||
callback.set_size(obj.content_length)
|
||||
obj.download_file(to_info, Callback=callback.relative_update)
|
||||
|
||||
+15
-11
@@ -8,7 +8,8 @@ from dvc import prompt
|
||||
from dvc.scheme import Schemes
|
||||
from dvc.utils.fs import as_atomic
|
||||
|
||||
from .fsspec_wrapper import CallbackMixin, FSSpecWrapper
|
||||
from ..progress import DEFAULT_CALLBACK
|
||||
from .fsspec_wrapper import FSSpecWrapper
|
||||
|
||||
_SSH_TIMEOUT = 60 * 30
|
||||
_SSH_CONFIG_FILE = os.path.expanduser(os.path.join("~", ".ssh", "config"))
|
||||
@@ -26,7 +27,7 @@ def ask_password(host, user, port):
|
||||
|
||||
|
||||
# pylint:disable=abstract-method
|
||||
class SSHFileSystem(CallbackMixin, FSSpecWrapper):
|
||||
class SSHFileSystem(FSSpecWrapper):
|
||||
scheme = Schemes.SSH
|
||||
REQUIRES = {"sshfs": "sshfs"}
|
||||
|
||||
@@ -66,7 +67,13 @@ class SSHFileSystem(CallbackMixin, FSSpecWrapper):
|
||||
or self.DEFAULT_PORT
|
||||
)
|
||||
|
||||
if config.get("ask_password") and config.get("password") is None:
|
||||
config["password"] = ask_password(
|
||||
login_info["host"], login_info["username"], login_info["port"]
|
||||
)
|
||||
|
||||
login_info["password"] = config.get("password")
|
||||
login_info["passphrase"] = config.get("password")
|
||||
|
||||
raw_keys = []
|
||||
if config.get("keyfile"):
|
||||
@@ -99,11 +106,6 @@ class SSHFileSystem(CallbackMixin, FSSpecWrapper):
|
||||
login_info["agent_forwarding"] = config.get("agent_forwarding", True)
|
||||
login_info["proxy_command"] = user_ssh_config.get("ProxyCommand")
|
||||
|
||||
if config.get("ask_password") and login_info["password"] is None:
|
||||
login_info["password"] = ask_password(
|
||||
login_info["host"], login_info["username"], login_info["port"]
|
||||
)
|
||||
|
||||
# We are going to automatically add stuff to known_hosts
|
||||
# something like paramiko's AutoAddPolicy()
|
||||
login_info["known_hosts"] = None
|
||||
@@ -119,10 +121,12 @@ class SSHFileSystem(CallbackMixin, FSSpecWrapper):
|
||||
# Ensure that if an interrupt happens during the transfer, we don't
|
||||
# pollute the cache.
|
||||
|
||||
def _upload_fobj(self, fobj, to_info, *args, **kwargs):
|
||||
def upload_fobj(self, fobj, to_info, **kwargs):
|
||||
with as_atomic(self, to_info) as tmp_file:
|
||||
super()._upload_fobj(fobj, tmp_file, *args, **kwargs)
|
||||
super().upload_fobj(fobj, tmp_file, **kwargs)
|
||||
|
||||
def _upload(self, from_file, to_info, *args, **kwargs):
|
||||
def put_file(
|
||||
self, from_file, to_info, callback=DEFAULT_CALLBACK, **kwargs
|
||||
):
|
||||
with as_atomic(self, to_info) as tmp_file:
|
||||
super()._upload(from_file, tmp_file, *args, **kwargs)
|
||||
super().put_file(from_file, tmp_file, callback=callback, **kwargs)
|
||||
|
||||
+2
-1
@@ -33,7 +33,8 @@ def transfer(
|
||||
return from_fs.download_file(from_info, to_info)
|
||||
|
||||
with from_fs.open(from_info, mode="rb") as fobj:
|
||||
return to_fs.upload_fobj(fobj, to_info)
|
||||
size = from_fs.getsize(from_info)
|
||||
return to_fs.upload(fobj, to_info, total=size)
|
||||
except OSError as exc:
|
||||
# If the target file already exists, we are going to simply
|
||||
# ignore the exception (#4992).
|
||||
|
||||
+3
-6
@@ -1,5 +1,4 @@
|
||||
import logging
|
||||
import os
|
||||
import threading
|
||||
from functools import lru_cache
|
||||
|
||||
@@ -71,15 +70,13 @@ class WebDAVFileSystem(FSSpecWrapper): # pylint:disable=abstract-method
|
||||
|
||||
return WebdavFileSystem(**self.fs_args)
|
||||
|
||||
def _upload_fobj(self, fobj, to_info, size: int = None):
|
||||
def upload_fobj(self, fobj, to_info, **kwargs):
|
||||
rpath = self.translate_path_info(to_info)
|
||||
self.makedirs(os.path.dirname(rpath))
|
||||
size = kwargs.get("size")
|
||||
# using upload_fileobj to directly upload fileobj rather than buffering
|
||||
# and using overwrite=True to avoid check for an extra exists call,
|
||||
# as caller should ensure that the file does not exist beforehand.
|
||||
return self.fs.client.upload_fileobj(
|
||||
fobj, rpath, overwrite=True, size=size
|
||||
)
|
||||
return self.fs.upload_fileobj(fobj, rpath, overwrite=True, size=size)
|
||||
|
||||
@lru_cache(512)
|
||||
def translate_path_info(self, path):
|
||||
|
||||
+30
-21
@@ -9,7 +9,7 @@ from funcy import cached_property, wrap_prop
|
||||
|
||||
from dvc.hash_info import HashInfo
|
||||
from dvc.path_info import CloudURLInfo
|
||||
from dvc.progress import Tqdm
|
||||
from dvc.progress import DEFAULT_CALLBACK
|
||||
from dvc.scheme import Schemes
|
||||
|
||||
from .base import BaseFileSystem
|
||||
@@ -29,6 +29,15 @@ def update_pbar(pbar, total):
|
||||
return update
|
||||
|
||||
|
||||
def update_callback(callback, total):
|
||||
def update(_, bytes_transfered):
|
||||
if bytes_transfered == -1:
|
||||
return callback.absolute_update(total)
|
||||
return callback.relative_update(bytes_transfered)
|
||||
|
||||
return update
|
||||
|
||||
|
||||
class WebHDFSFileSystem(BaseFileSystem): # pylint:disable=abstract-method
|
||||
scheme = Schemes.WEBHDFS
|
||||
PATH_CLS = CloudURLInfo
|
||||
@@ -141,31 +150,31 @@ class WebHDFSFileSystem(BaseFileSystem): # pylint:disable=abstract-method
|
||||
self.hdfs_client.makedirs(to_info.parent.path)
|
||||
self.hdfs_client.rename(from_info.path, to_info.path)
|
||||
|
||||
def _upload_fobj(self, fobj, to_info, **kwargs):
|
||||
def upload_fobj(self, fobj, to_info, **kwargs):
|
||||
with self.hdfs_client.write(to_info.path) as fdest:
|
||||
shutil.copyfileobj(fobj, fdest)
|
||||
|
||||
def _upload(
|
||||
self, from_file, to_info, name=None, no_progress_bar=False, **_kwargs
|
||||
def put_file(
|
||||
self, from_file, to_info, callback=DEFAULT_CALLBACK, **kwargs
|
||||
):
|
||||
total = os.path.getsize(from_file)
|
||||
with Tqdm(
|
||||
desc=name, total=total, disable=no_progress_bar, bytes=True
|
||||
) as pbar:
|
||||
self.hdfs_client.upload(
|
||||
to_info.path,
|
||||
from_file,
|
||||
overwrite=True,
|
||||
progress=update_pbar(pbar, total),
|
||||
)
|
||||
callback.set_size(total)
|
||||
|
||||
def _download(
|
||||
self, from_info, to_file, name=None, no_progress_bar=False, **_kwargs
|
||||
self.hdfs_client.makedirs(to_info.parent.path)
|
||||
return self.hdfs_client.upload(
|
||||
to_info.path,
|
||||
from_file,
|
||||
overwrite=True,
|
||||
progress=update_callback(callback, total),
|
||||
)
|
||||
|
||||
def get_file(
|
||||
self, from_info, to_file, callback=DEFAULT_CALLBACK, **kwargs
|
||||
):
|
||||
total = self.getsize(from_info)
|
||||
with Tqdm(
|
||||
desc=name, total=total, disable=no_progress_bar, bytes=True
|
||||
) as pbar:
|
||||
self.hdfs_client.download(
|
||||
from_info.path, to_file, progress=update_pbar(pbar, total)
|
||||
)
|
||||
if total:
|
||||
callback.set_size(total)
|
||||
|
||||
self.hdfs_client.download(
|
||||
from_info.path, to_file, progress=update_callback(callback, total)
|
||||
)
|
||||
|
||||
@@ -25,6 +25,18 @@ logger = logging.getLogger(__name__)
|
||||
|
||||
RESERVED_NAMES = {"local", "localhost"}
|
||||
|
||||
DEFAULT_STARTUP_SCRIPT = """#!/bin/bash
|
||||
sudo apt-get update
|
||||
sudo apt-get install --yes python3 python3-pip
|
||||
python3 -m pip install --upgrade pip
|
||||
|
||||
pushd /etc/apt/sources.list.d
|
||||
sudo wget https://dvc.org/deb/dvc.list
|
||||
sudo apt-get update
|
||||
sudo apt-get install --yes dvc
|
||||
popd
|
||||
"""
|
||||
|
||||
|
||||
def validate_name(name: str):
|
||||
from dvc.exceptions import InvalidArgumentError
|
||||
@@ -168,6 +180,12 @@ class MachineManager:
|
||||
def create(self, name: Optional[str]):
|
||||
"""Create and start the specified machine instance."""
|
||||
config, backend = self.get_config_and_backend(name)
|
||||
if "startup_script" in config:
|
||||
with open(config["startup_script"]) as fobj:
|
||||
startup_script = fobj.read()
|
||||
else:
|
||||
startup_script = DEFAULT_STARTUP_SCRIPT
|
||||
config["startup_script"] = startup_script
|
||||
return backend.create(**config)
|
||||
|
||||
def destroy(self, name: Optional[str]):
|
||||
|
||||
@@ -1,15 +1,38 @@
|
||||
from abc import abstractmethod
|
||||
from abc import ABC, abstractmethod
|
||||
from contextlib import contextmanager
|
||||
from typing import TYPE_CHECKING, Iterator, Optional
|
||||
|
||||
from tpi import base
|
||||
|
||||
if TYPE_CHECKING:
|
||||
from dvc.fs.ssh import SSHFileSystem
|
||||
from dvc.repo.experiments.executor.base import BaseExecutor
|
||||
from dvc.types import StrPath
|
||||
|
||||
|
||||
class BaseMachineBackend(base.BaseMachineBackend):
|
||||
class BaseMachineBackend(ABC):
|
||||
def __init__(self, tmp_dir: "StrPath", **kwargs):
|
||||
raise NotImplementedError
|
||||
|
||||
@abstractmethod
|
||||
def create(self, name: Optional[str] = None, **config):
|
||||
"""Create and start an instance of the specified machine."""
|
||||
|
||||
@abstractmethod
|
||||
def destroy(self, name: Optional[str] = None, **config):
|
||||
"""Stop and destroy all instances of the specified machine."""
|
||||
|
||||
@abstractmethod
|
||||
def instances(
|
||||
self, name: Optional[str] = None, **config
|
||||
) -> Iterator[dict]:
|
||||
"""Iterate over status of all instances of the specified machine."""
|
||||
|
||||
def close(self):
|
||||
pass
|
||||
|
||||
@abstractmethod
|
||||
def run_shell(self, name: Optional[str] = None, **config):
|
||||
"""Spawn an interactive SSH shell for the specified machine."""
|
||||
|
||||
@abstractmethod
|
||||
def get_executor(
|
||||
self, name: Optional[str] = None, **config
|
||||
|
||||
@@ -5,11 +5,17 @@ from tpi import TerraformProviderIterative, terraform
|
||||
|
||||
from dvc.fs.ssh import SSHFileSystem
|
||||
|
||||
from .base import BaseMachineBackend
|
||||
|
||||
if TYPE_CHECKING:
|
||||
from dvc.repo.experiments.executor.base import BaseExecutor
|
||||
from dvc.types import StrPath
|
||||
|
||||
|
||||
class TerraformBackend(terraform.TerraformBackend):
|
||||
class TerraformBackend(terraform.TerraformBackend, BaseMachineBackend):
|
||||
def __init__(self, tmp_dir: "StrPath", **kwargs):
|
||||
super().__init__(tmp_dir)
|
||||
|
||||
def get_executor(
|
||||
self, name: Optional[str] = None, **config
|
||||
) -> "BaseExecutor":
|
||||
|
||||
@@ -97,7 +97,6 @@ class ObjectDB:
|
||||
hash_info: "HashInfo",
|
||||
move: bool = True,
|
||||
verify: Optional[bool] = None,
|
||||
**kwargs,
|
||||
):
|
||||
if self.read_only:
|
||||
raise ObjectDBPermissionError("Cannot add to read-only ODB")
|
||||
@@ -121,10 +120,6 @@ class ObjectDB:
|
||||
except (ObjectFormatError, FileNotFoundError):
|
||||
pass
|
||||
|
||||
callback = kwargs.get("download_callback")
|
||||
if callback:
|
||||
callback(1)
|
||||
|
||||
def hash_to_path_info(self, hash_) -> "DvcPath":
|
||||
return self.path_info / hash_[0:2] / hash_[2:]
|
||||
|
||||
|
||||
@@ -70,7 +70,7 @@ class ReferenceObjectDB(ObjectDB):
|
||||
ref_fobj = io.BytesIO(ref_file.to_bytes())
|
||||
ref_fobj.seek(0)
|
||||
try:
|
||||
self.fs.upload_fobj(ref_fobj, to_info)
|
||||
self.fs.upload(ref_fobj, to_info)
|
||||
except OSError as exc:
|
||||
if isinstance(exc, FileExistsError) or (
|
||||
os.name == "nt"
|
||||
|
||||
@@ -34,9 +34,8 @@ def _upload_file(path_info, fs, odb, upload_odb):
|
||||
tmp_info = upload_odb.path_info / tmp_fname()
|
||||
with fs.open(path_info, mode="rb", chunk_size=fs.CHUNK_SIZE) as stream:
|
||||
stream = HashedStreamReader(stream)
|
||||
upload_odb.fs.upload_fobj(
|
||||
stream, tmp_info, desc=path_info.name, size=fs.getsize(path_info)
|
||||
)
|
||||
size = fs.getsize(path_info)
|
||||
upload_odb.fs.upload(stream, tmp_info, desc=path_info.name, total=size)
|
||||
|
||||
odb.add(tmp_info, upload_odb.fs, stream.hash_info)
|
||||
return path_info, odb.get(stream.hash_info)
|
||||
|
||||
+40
-107
@@ -1,20 +1,19 @@
|
||||
import errno
|
||||
import itertools
|
||||
import logging
|
||||
from concurrent import futures
|
||||
from concurrent.futures import ThreadPoolExecutor
|
||||
from functools import partial, wraps
|
||||
from typing import TYPE_CHECKING, Callable, Iterable, Optional
|
||||
from typing import TYPE_CHECKING, Any, Callable, Iterable, Optional
|
||||
|
||||
from funcy import split
|
||||
|
||||
from dvc.progress import Tqdm
|
||||
from dvc.utils.threadpool import ThreadPoolExecutor
|
||||
|
||||
if TYPE_CHECKING:
|
||||
from dvc.hash_info import HashInfo
|
||||
|
||||
from .db.base import ObjectDB
|
||||
from .db.index import ObjectDBIndexBase
|
||||
from .tree import Tree
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
@@ -38,109 +37,48 @@ def _log_exceptions(func):
|
||||
return wrapper
|
||||
|
||||
|
||||
def _transfer(
|
||||
src, dest, dir_ids, file_ids, missing_ids, jobs, verify, move, **kwargs
|
||||
):
|
||||
func = _log_exceptions(dest.add)
|
||||
total = len(dir_ids) + len(file_ids)
|
||||
if total == 0:
|
||||
return 0
|
||||
with Tqdm(total=total, unit="file", desc="Transferring") as pbar:
|
||||
func = pbar.wrap_fn(func)
|
||||
with ThreadPoolExecutor(max_workers=jobs) as executor:
|
||||
processor = partial(
|
||||
_create_tasks,
|
||||
executor,
|
||||
jobs,
|
||||
func,
|
||||
src,
|
||||
verify,
|
||||
move,
|
||||
)
|
||||
processor.add_func = func
|
||||
_do_transfer(
|
||||
src,
|
||||
dest,
|
||||
dir_ids,
|
||||
file_ids,
|
||||
missing_ids,
|
||||
processor,
|
||||
verify=verify,
|
||||
move=move,
|
||||
**kwargs,
|
||||
)
|
||||
return total
|
||||
def find_tree_by_obj_id(
|
||||
odbs: Iterable[Optional["ObjectDB"]], obj_id: "HashInfo"
|
||||
) -> Optional["Tree"]:
|
||||
from .errors import ObjectFormatError
|
||||
from .tree import Tree
|
||||
|
||||
|
||||
def _create_tasks(executor, jobs, func, src, verify, move, obj_ids):
|
||||
fails = 0
|
||||
hash_iter = iter(obj_ids)
|
||||
|
||||
def submit(hash_info):
|
||||
obj = src.get(hash_info)
|
||||
return executor.submit(
|
||||
func,
|
||||
obj.path_info,
|
||||
obj.fs,
|
||||
obj.hash_info,
|
||||
verify=verify,
|
||||
move=move,
|
||||
)
|
||||
|
||||
def create_taskset(amount):
|
||||
return {
|
||||
submit(hash_info)
|
||||
for hash_info in itertools.islice(hash_iter, amount)
|
||||
}
|
||||
|
||||
tasks = create_taskset(jobs * 5)
|
||||
while tasks:
|
||||
done, tasks = futures.wait(tasks, return_when=futures.FIRST_COMPLETED)
|
||||
fails += sum(task.result() for task in done)
|
||||
tasks.update(create_taskset(len(done)))
|
||||
return fails
|
||||
for odb in odbs:
|
||||
if odb is not None:
|
||||
try:
|
||||
return Tree.load(odb, obj_id)
|
||||
except (FileNotFoundError, ObjectFormatError):
|
||||
pass
|
||||
return None
|
||||
|
||||
|
||||
def _do_transfer(
|
||||
src: "ObjectDB",
|
||||
dest: "ObjectDB",
|
||||
dir_ids: Iterable["HashInfo"],
|
||||
file_ids: Iterable["HashInfo"],
|
||||
obj_ids: Iterable["HashInfo"],
|
||||
missing_ids: Iterable["HashInfo"],
|
||||
processor: Callable,
|
||||
src_index: Optional["ObjectDBIndexBase"] = None,
|
||||
dest_index: Optional["ObjectDBIndexBase"] = None,
|
||||
cache_odb: Optional["ObjectDB"] = None,
|
||||
**kwargs,
|
||||
**kwargs: Any,
|
||||
):
|
||||
from dvc.exceptions import FileTransferError
|
||||
from dvc.objects.errors import ObjectFormatError
|
||||
|
||||
dir_ids, file_ids = split(lambda hash_info: hash_info.isdir, obj_ids)
|
||||
total_fails = 0
|
||||
succeeded_dir_objs = []
|
||||
all_file_ids = set(file_ids)
|
||||
|
||||
for dir_hash in dir_ids:
|
||||
from .tree import Tree
|
||||
|
||||
bound_file_ids = set()
|
||||
dir_obj: Optional["Tree"] = None
|
||||
for odb in (cache_odb, src):
|
||||
if odb is not None:
|
||||
try:
|
||||
dir_obj = Tree.load(odb, dir_hash)
|
||||
break
|
||||
except (FileNotFoundError, ObjectFormatError):
|
||||
pass
|
||||
dir_obj = find_tree_by_obj_id([cache_odb, src], dir_hash)
|
||||
assert dir_obj
|
||||
|
||||
entry_ids = {entry.hash_info for _, entry in dir_obj}
|
||||
bound_file_ids = all_file_ids & entry_ids
|
||||
all_file_ids -= entry_ids
|
||||
|
||||
for file_hash in all_file_ids.copy():
|
||||
if file_hash in entry_ids:
|
||||
bound_file_ids.add(file_hash)
|
||||
all_file_ids.remove(file_hash)
|
||||
|
||||
dir_fails = processor(bound_file_ids)
|
||||
dir_fails = sum(processor(bound_file_ids))
|
||||
if dir_fails:
|
||||
logger.debug(
|
||||
"failed to upload full contents of '%s', "
|
||||
@@ -164,19 +102,13 @@ def _do_transfer(
|
||||
dir_obj.name,
|
||||
)
|
||||
else:
|
||||
raw_obj = src.get(dir_obj.hash_info)
|
||||
is_dir_failed = processor.add_func( # type: ignore[attr-defined]
|
||||
raw_obj.path_info,
|
||||
raw_obj.fs,
|
||||
raw_obj.hash_info,
|
||||
**kwargs,
|
||||
)
|
||||
is_dir_failed = sum(processor([dir_obj.hash_info]))
|
||||
total_fails += is_dir_failed
|
||||
if not is_dir_failed:
|
||||
succeeded_dir_objs.append(dir_obj)
|
||||
|
||||
# insert the rest
|
||||
total_fails += processor(all_file_ids)
|
||||
total_fails += sum(processor(all_file_ids))
|
||||
if total_fails:
|
||||
if src_index:
|
||||
src_index.clear()
|
||||
@@ -222,18 +154,19 @@ def transfer(
|
||||
if not status.new:
|
||||
return 0
|
||||
|
||||
dir_ids, file_ids = split(lambda hash_info: hash_info.isdir, status.new)
|
||||
if jobs is None:
|
||||
jobs = dest.fs.jobs
|
||||
def func(hash_info: "HashInfo") -> None:
|
||||
obj = src.get(hash_info)
|
||||
return dest.add(
|
||||
obj.path_info, obj.fs, obj.hash_info, verify=verify, move=move
|
||||
)
|
||||
|
||||
return _transfer(
|
||||
src,
|
||||
dest,
|
||||
set(dir_ids),
|
||||
set(file_ids),
|
||||
status.missing,
|
||||
jobs,
|
||||
verify,
|
||||
move,
|
||||
**kwargs,
|
||||
)
|
||||
total = len(status.new)
|
||||
jobs = jobs or dest.fs.jobs
|
||||
with Tqdm(total=total, unit="file", desc="Transferring") as pbar:
|
||||
with ThreadPoolExecutor(max_workers=jobs) as executor:
|
||||
wrapped_func = pbar.wrap_fn(_log_exceptions(func))
|
||||
processor = partial(executor.imap_unordered, wrapped_func)
|
||||
_do_transfer(
|
||||
src, dest, status.new, status.missing, processor, **kwargs
|
||||
)
|
||||
return total
|
||||
|
||||
+3
-2
@@ -849,8 +849,9 @@ class Output:
|
||||
try:
|
||||
objects.check(self.odb, obj)
|
||||
except FileNotFoundError:
|
||||
remote = self.repo.cloud.get_remote_odb(self.remote)
|
||||
self.repo.cloud.pull([obj.hash_info], odb=remote, **kwargs)
|
||||
if self.remote:
|
||||
kwargs["remote"] = self.remote
|
||||
self.repo.cloud.pull([obj.hash_info], **kwargs)
|
||||
|
||||
if self.obj:
|
||||
return self.obj
|
||||
|
||||
+29
-1
@@ -1,5 +1,4 @@
|
||||
"""Manages progress bars for DVC repo."""
|
||||
|
||||
import logging
|
||||
import sys
|
||||
from threading import RLock
|
||||
@@ -182,9 +181,38 @@ class FsspecCallback(fsspec.Callback):
|
||||
size = self.fs.info(self.path_info)["size"]
|
||||
self.progress_bar.total = size
|
||||
self.progress_bar.refresh()
|
||||
super().set_size(size)
|
||||
|
||||
def relative_update(self, inc=1):
|
||||
self.progress_bar.update(inc)
|
||||
super().relative_update(inc)
|
||||
|
||||
def absolute_update(self, value):
|
||||
self.progress_bar.update_to(value)
|
||||
super().absolute_update(value)
|
||||
|
||||
@staticmethod
|
||||
def wrap_fn(cb, fn):
|
||||
def wrapped(*args, **kwargs):
|
||||
res = fn(*args, **kwargs)
|
||||
cb.relative_update()
|
||||
return res
|
||||
|
||||
return wrapped
|
||||
|
||||
|
||||
def tdqm_or_callback_wrapped(
|
||||
fobj, method, total, callback=None, **pbar_kwargs
|
||||
):
|
||||
if callback:
|
||||
from funcy import nullcontext
|
||||
from tqdm.utils import CallbackIOWrapper
|
||||
|
||||
callback.set_size(total)
|
||||
wrapper = CallbackIOWrapper(callback.relative_update, fobj, method)
|
||||
return nullcontext(wrapper)
|
||||
|
||||
return Tqdm.wrapattr(fobj, method, total=total, bytes=True, **pbar_kwargs)
|
||||
|
||||
|
||||
DEFAULT_CALLBACK = fsspec.callbacks.NoOpCallback()
|
||||
|
||||
+8
-28
@@ -1,48 +1,28 @@
|
||||
import os.path
|
||||
from typing import Dict, List, Set
|
||||
from typing import Dict, List
|
||||
|
||||
import dpath
|
||||
|
||||
|
||||
def get_files(data: Dict) -> Set:
|
||||
def get_files(data: Dict) -> List:
|
||||
files = set()
|
||||
for rev in data.keys():
|
||||
for file in data[rev].get("data", {}).keys():
|
||||
files.add(file)
|
||||
return files
|
||||
sorted_files = sorted(files)
|
||||
return sorted_files
|
||||
|
||||
|
||||
def group_by_filename(plots_data: Dict) -> List[Dict]:
|
||||
# TODO use dpath.util.search once
|
||||
# https://github.com/dpath-maintainers/dpath-python/issues/147 is released
|
||||
# now cannot search when errors are present in data
|
||||
files = get_files(plots_data)
|
||||
grouped = []
|
||||
|
||||
for file in files:
|
||||
tmp: Dict = {}
|
||||
for revision, revision_data in plots_data.items():
|
||||
if file in revision_data.get("data", {}):
|
||||
if "data" not in tmp:
|
||||
tmp[revision] = {"data": {}}
|
||||
tmp[revision]["data"].update(
|
||||
{file: revision_data["data"][file]}
|
||||
)
|
||||
grouped.append(tmp)
|
||||
|
||||
grouped.append(dpath.util.search(plots_data, ["*", "*", file]))
|
||||
return grouped
|
||||
|
||||
|
||||
def find_vega(repo, plots_data, target):
|
||||
# TODO same as group_by_filename
|
||||
grouped = group_by_filename(plots_data)
|
||||
found = None
|
||||
for plot_group in grouped:
|
||||
files = get_files(plot_group)
|
||||
assert len(files) == 1
|
||||
file = files.pop()
|
||||
if file == target:
|
||||
found = plot_group
|
||||
break
|
||||
|
||||
found = dpath.util.search(plots_data, ["*", "*", target])
|
||||
from dvc.render.vega import VegaRenderer
|
||||
|
||||
if found and VegaRenderer.matches(found):
|
||||
|
||||
+31
-30
@@ -4,7 +4,6 @@ from collections import defaultdict
|
||||
from typing import Dict, List
|
||||
|
||||
from dvc.exceptions import PathMissingError
|
||||
from dvc.objects.stage import get_file_hash
|
||||
from dvc.repo import locked
|
||||
from dvc.repo.experiments.utils import fix_exp_head
|
||||
|
||||
@@ -45,7 +44,7 @@ def diff(self, a_rev="HEAD", b_rev=None, targets=None):
|
||||
repo_fs, targets
|
||||
)
|
||||
|
||||
results[rev] = _paths_checksums(self, repo_fs, targets_path_infos)
|
||||
results[rev] = _paths_checksums(self, targets_path_infos)
|
||||
|
||||
if targets is not None:
|
||||
# check for overlapping missing targets between a_rev and b_rev
|
||||
@@ -98,7 +97,7 @@ def diff(self, a_rev="HEAD", b_rev=None, targets=None):
|
||||
return ret if any(ret.values()) else {}
|
||||
|
||||
|
||||
def _paths_checksums(repo, repo_fs, targets):
|
||||
def _paths_checksums(repo, targets):
|
||||
"""
|
||||
A dictionary of checksums addressed by relpaths collected from
|
||||
the current fs outputs.
|
||||
@@ -110,10 +109,10 @@ def _paths_checksums(repo, repo_fs, targets):
|
||||
file: "data"
|
||||
"""
|
||||
|
||||
return dict(_output_paths(repo, repo_fs, targets))
|
||||
return dict(_output_paths(repo, targets))
|
||||
|
||||
|
||||
def _output_paths(repo, repo_fs, targets):
|
||||
def _output_paths(repo, targets):
|
||||
from dvc.fs.local import LocalFileSystem
|
||||
from dvc.objects.stage import stage as ostage
|
||||
|
||||
@@ -131,45 +130,47 @@ def _output_paths(repo, repo_fs, targets):
|
||||
else os.path.join(str(output), "")
|
||||
)
|
||||
|
||||
def _to_checksum(output):
|
||||
if on_working_fs:
|
||||
return ostage(
|
||||
repo.odb.local,
|
||||
output.path_info,
|
||||
repo.odb.local.fs,
|
||||
"md5",
|
||||
dry_run=True,
|
||||
)[1].hash_info.value
|
||||
return output.hash_info.value
|
||||
|
||||
for output in repo.index.outs:
|
||||
if _exists(output):
|
||||
yield_output = targets is None or any(
|
||||
output.path_info.isin_or_eq(target) for target in targets
|
||||
)
|
||||
|
||||
if on_working_fs:
|
||||
_, obj = ostage(
|
||||
repo.odb.local,
|
||||
output.path_info,
|
||||
repo.odb.local.fs,
|
||||
"md5",
|
||||
dry_run=True,
|
||||
dvcignore=output.dvcignore,
|
||||
)
|
||||
hash_info = obj.hash_info
|
||||
else:
|
||||
hash_info = output.hash_info
|
||||
obj = output.get_obj()
|
||||
|
||||
if yield_output:
|
||||
yield _to_path(output), _to_checksum(output)
|
||||
yield _to_path(output), hash_info.value
|
||||
|
||||
if not obj:
|
||||
continue
|
||||
|
||||
if output.is_dir_checksum and (
|
||||
yield_output
|
||||
or any(target.isin(output.path_info) for target in targets)
|
||||
):
|
||||
yield from _dir_output_paths(repo_fs, output, targets)
|
||||
yield from _dir_output_paths(output.path_info, obj, targets)
|
||||
|
||||
|
||||
def _dir_output_paths(repo_fs, output, targets=None):
|
||||
from dvc.config import NoRemoteError
|
||||
|
||||
try:
|
||||
for fname in repo_fs.walk_files(output.path_info):
|
||||
if targets is None or any(
|
||||
fname.isin_or_eq(target) for target in targets
|
||||
):
|
||||
# pylint: disable=no-member
|
||||
yield str(fname), get_file_hash(fname, repo_fs, "md5").value
|
||||
except NoRemoteError:
|
||||
logger.warning("dir cache entry for '%s' is missing", output)
|
||||
def _dir_output_paths(path_info, obj, targets=None):
|
||||
for key, entry_obj in obj:
|
||||
fname = path_info.joinpath(*key)
|
||||
if targets is None or any(
|
||||
fname.isin_or_eq(target) for target in targets
|
||||
):
|
||||
# pylint: disable=no-member
|
||||
yield str(fname), entry_obj.hash_info.value
|
||||
|
||||
|
||||
def _filter_missing(repo_fs, paths):
|
||||
|
||||
@@ -47,6 +47,15 @@ class InvalidRemoteSCMRepo(SCMError):
|
||||
super().__init__(msg)
|
||||
|
||||
|
||||
class GitAuthError(SCMError):
|
||||
def __init__(self, url: str):
|
||||
super().__init__(
|
||||
f"HTTP Git authentication is not supported: '{url}'"
|
||||
"\nSee https://dvc.org/doc//user-guide/"
|
||||
"troubleshooting#git-auth"
|
||||
)
|
||||
|
||||
|
||||
class Base:
|
||||
"""Base class for source control management driver implementations."""
|
||||
|
||||
|
||||
@@ -20,7 +20,7 @@ from funcy import cached_property
|
||||
|
||||
from dvc.path_info import PathInfo
|
||||
from dvc.progress import Tqdm
|
||||
from dvc.scm.base import InvalidRemoteSCMRepo, SCMError
|
||||
from dvc.scm.base import GitAuthError, InvalidRemoteSCMRepo, SCMError
|
||||
from dvc.utils import relpath
|
||||
|
||||
from ..objects import GitObject
|
||||
@@ -355,7 +355,7 @@ class DulwichBackend(BaseGitBackend): # pylint:disable=abstract-method
|
||||
yield os.fsdecode(key)
|
||||
|
||||
def iter_remote_refs(self, url: str, base: Optional[str] = None):
|
||||
from dulwich.client import get_transport_and_path
|
||||
from dulwich.client import HTTPUnauthorized, get_transport_and_path
|
||||
from dulwich.errors import NotGitRepository
|
||||
from dulwich.porcelain import get_remote_repo
|
||||
|
||||
@@ -376,6 +376,8 @@ class DulwichBackend(BaseGitBackend): # pylint:disable=abstract-method
|
||||
yield from (os.fsdecode(ref) for ref in client.get_refs(path))
|
||||
except NotGitRepository as exc:
|
||||
raise InvalidRemoteSCMRepo(url) from exc
|
||||
except HTTPUnauthorized:
|
||||
raise GitAuthError(url)
|
||||
|
||||
def get_refs_containing(self, rev: str, pattern: Optional[str] = None):
|
||||
raise NotImplementedError
|
||||
@@ -388,7 +390,7 @@ class DulwichBackend(BaseGitBackend): # pylint:disable=abstract-method
|
||||
force: bool = False,
|
||||
on_diverged: Optional[Callable[[str, str], bool]] = None,
|
||||
):
|
||||
from dulwich.client import get_transport_and_path
|
||||
from dulwich.client import HTTPUnauthorized, get_transport_and_path
|
||||
from dulwich.errors import NotGitRepository, SendPackError
|
||||
from dulwich.porcelain import (
|
||||
DivergedBranches,
|
||||
@@ -447,6 +449,8 @@ class DulwichBackend(BaseGitBackend): # pylint:disable=abstract-method
|
||||
)
|
||||
except (NotGitRepository, SendPackError) as exc:
|
||||
raise SCMError("Git failed to push '{src}' to '{url}'") from exc
|
||||
except HTTPUnauthorized:
|
||||
raise GitAuthError(url)
|
||||
|
||||
def _push_dest_refs(
|
||||
self, src: Optional[str], dest: str
|
||||
|
||||
+6
-7
@@ -53,7 +53,6 @@ class State(StateBase): # pylint: disable=too-many-instance-attributes
|
||||
self.tmp_dir = tmp_dir
|
||||
self.root_dir = root_dir
|
||||
self.dvcignore = dvcignore
|
||||
self.fs = LocalFileSystem()
|
||||
|
||||
if not tmp_dir:
|
||||
return
|
||||
@@ -85,7 +84,7 @@ class State(StateBase): # pylint: disable=too-many-instance-attributes
|
||||
assert isinstance(hash_info, HashInfo)
|
||||
assert os.path.exists(path_info)
|
||||
|
||||
mtime, size = get_mtime_and_size(path_info, self.fs, self.dvcignore)
|
||||
mtime, size = get_mtime_and_size(path_info, fs, self.dvcignore)
|
||||
inode = get_inode(path_info)
|
||||
|
||||
logger.debug(
|
||||
@@ -121,7 +120,7 @@ class State(StateBase): # pylint: disable=too-many-instance-attributes
|
||||
if not os.path.exists(path):
|
||||
return None
|
||||
|
||||
mtime, size = get_mtime_and_size(path, self.fs, self.dvcignore)
|
||||
mtime, size = get_mtime_and_size(path, fs, self.dvcignore)
|
||||
inode = get_inode(path)
|
||||
|
||||
value = self.md5s.get(inode)
|
||||
@@ -143,10 +142,10 @@ class State(StateBase): # pylint: disable=too-many-instance-attributes
|
||||
|
||||
assert isinstance(path_info, str) or path_info.scheme == "local"
|
||||
|
||||
if not self.fs.exists(path_info):
|
||||
if not fs.exists(path_info):
|
||||
return
|
||||
|
||||
mtime, _ = get_mtime_and_size(path_info, self.fs, self.dvcignore)
|
||||
mtime, _ = get_mtime_and_size(path_info, fs, self.dvcignore)
|
||||
inode = get_inode(path_info)
|
||||
relative_path = relpath(path_info, self.root_dir)
|
||||
|
||||
@@ -168,11 +167,11 @@ class State(StateBase): # pylint: disable=too-many-instance-attributes
|
||||
for relative_path in ref:
|
||||
path = os.path.join(self.root_dir, relative_path)
|
||||
|
||||
if path in used or not self.fs.exists(path):
|
||||
if path in used or not fs.exists(path):
|
||||
continue
|
||||
|
||||
inode = get_inode(path)
|
||||
mtime, _ = get_mtime_and_size(path, self.fs, self.dvcignore)
|
||||
mtime, _ = get_mtime_and_size(path, fs, self.dvcignore)
|
||||
|
||||
if ref[relative_path] == (inode, mtime):
|
||||
logger.debug("Removing '%s' as unused link.", path)
|
||||
|
||||
+15
-9
@@ -193,33 +193,39 @@ def makedirs(path, exist_ok=False, mode=None):
|
||||
logger.trace("failed to chmod '%o' '%s'", mode, path, exc_info=True)
|
||||
|
||||
|
||||
def copyfile(src, dest, no_progress_bar=False, name=None):
|
||||
def copyfile(src, dest, callback=None, no_progress_bar=False, name=None):
|
||||
"""Copy file with progress bar"""
|
||||
from dvc.progress import Tqdm
|
||||
|
||||
name = name if name else os.path.basename(dest)
|
||||
total = os.stat(src).st_size
|
||||
|
||||
if os.path.isdir(dest):
|
||||
dest = os.path.join(dest, os.path.basename(src))
|
||||
|
||||
if callback:
|
||||
callback.set_size(total)
|
||||
|
||||
try:
|
||||
System.reflink(src, dest)
|
||||
except DvcException:
|
||||
from dvc.progress import tdqm_or_callback_wrapped
|
||||
|
||||
with open(src, "rb") as fsrc, open(dest, "wb+") as fdest:
|
||||
with Tqdm.wrapattr(
|
||||
with tdqm_or_callback_wrapped(
|
||||
fdest,
|
||||
"write",
|
||||
desc=name,
|
||||
total,
|
||||
callback=callback,
|
||||
disable=no_progress_bar,
|
||||
total=total,
|
||||
bytes=True,
|
||||
) as fdest_wrapped:
|
||||
desc=name,
|
||||
) as wrapped:
|
||||
while True:
|
||||
buf = fsrc.read(LOCAL_CHUNK_SIZE)
|
||||
if not buf:
|
||||
break
|
||||
fdest_wrapped.write(buf)
|
||||
wrapped.write(buf)
|
||||
|
||||
if callback:
|
||||
callback.absolute_update(total)
|
||||
|
||||
|
||||
def copy_fobj_to_file(fsrc, dest):
|
||||
|
||||
@@ -14,6 +14,13 @@ LOADERS.update(
|
||||
{".toml": load_toml, ".json": load_json, ".py": load_py} # noqa: F405
|
||||
)
|
||||
|
||||
DUMPERS: DefaultDict[str, DumperFn] = defaultdict( # noqa: F405
|
||||
lambda: dump_yaml # noqa: F405
|
||||
)
|
||||
DUMPERS.update(
|
||||
{".toml": dump_toml, ".json": dump_json, ".py": dump_py} # noqa: F405
|
||||
)
|
||||
|
||||
MODIFIERS: DefaultDict[str, ModifierFn] = defaultdict( # noqa: F405
|
||||
lambda: modify_yaml # noqa: F405
|
||||
)
|
||||
|
||||
@@ -63,10 +63,16 @@ def _load_data(path: "AnyPath", parser: ParserFn, fs: "BaseFileSystem" = None):
|
||||
return parser(fd.read(), path)
|
||||
|
||||
|
||||
def _dump_data(path, data: Any, dumper: DumperFn, fs: "BaseFileSystem" = None):
|
||||
def _dump_data(
|
||||
path,
|
||||
data: Any,
|
||||
dumper: DumperFn,
|
||||
fs: "BaseFileSystem" = None,
|
||||
**dumper_args,
|
||||
):
|
||||
open_fn = fs.open if fs else open
|
||||
with open_fn(path, "w+", encoding="utf-8") as fd: # type: ignore
|
||||
dumper(data, fd)
|
||||
dumper(data, fd, **dumper_args)
|
||||
|
||||
|
||||
@contextmanager
|
||||
|
||||
@@ -19,8 +19,8 @@ def parse_json(text, path, **kwargs):
|
||||
return json.loads(text, **kwargs) or {}
|
||||
|
||||
|
||||
def dump_json(path, data, fs=None):
|
||||
return _dump_data(path, data, dumper=json.dump, fs=fs)
|
||||
def dump_json(path, data, fs=None, **kwargs):
|
||||
return _dump_data(path, data, dumper=json.dump, fs=fs, **kwargs)
|
||||
|
||||
|
||||
@contextmanager
|
||||
|
||||
@@ -40,8 +40,8 @@ def _dump(data, stream):
|
||||
return toml.dump(data, stream, encoder=toml.TomlPreserveCommentEncoder())
|
||||
|
||||
|
||||
def dump_toml(path, data, fs=None):
|
||||
return _dump_data(path, data, dumper=_dump, fs=fs)
|
||||
def dump_toml(path, data, fs=None, **kwargs):
|
||||
return _dump_data(path, data, dumper=_dump, fs=fs, **kwargs)
|
||||
|
||||
|
||||
@contextmanager
|
||||
|
||||
@@ -58,8 +58,8 @@ def _dump(data, stream):
|
||||
return yaml.dump(data, stream)
|
||||
|
||||
|
||||
def dump_yaml(path, data, fs=None):
|
||||
return _dump_data(path, data, dumper=_dump, fs=fs)
|
||||
def dump_yaml(path, data, fs=None, **kwargs):
|
||||
return _dump_data(path, data, dumper=_dump, fs=fs, **kwargs)
|
||||
|
||||
|
||||
def loads_yaml(s, typ="safe"):
|
||||
|
||||
@@ -0,0 +1,34 @@
|
||||
from concurrent import futures
|
||||
from itertools import islice
|
||||
from typing import Any, Callable, Iterable, Iterator, Set, TypeVar
|
||||
|
||||
_T = TypeVar("_T")
|
||||
|
||||
|
||||
class ThreadPoolExecutor(futures.ThreadPoolExecutor):
|
||||
_max_workers: int
|
||||
|
||||
@property
|
||||
def max_workers(self) -> int:
|
||||
return self._max_workers
|
||||
|
||||
def imap_unordered(
|
||||
self, fn: Callable[..., _T], *iterables: Iterable[Any]
|
||||
) -> Iterator[_T]:
|
||||
"""Lazier version of map that does not preserve ordering of results.
|
||||
|
||||
It does not create all the futures at once to reduce memory usage.
|
||||
"""
|
||||
|
||||
def create_taskset(n: int) -> Set[futures.Future]:
|
||||
return {self.submit(fn, *args) for args in islice(it, n)}
|
||||
|
||||
it = zip(*iterables)
|
||||
tasks = create_taskset(self.max_workers * 5)
|
||||
while tasks:
|
||||
done, tasks = futures.wait(
|
||||
tasks, return_when=futures.FIRST_COMPLETED
|
||||
)
|
||||
for fut in done:
|
||||
yield fut.result()
|
||||
tasks.update(create_taskset(len(done)))
|
||||
+1
-1
@@ -6,7 +6,7 @@
|
||||
import os
|
||||
import subprocess
|
||||
|
||||
_BASE_VERSION = "2.7.0"
|
||||
_BASE_VERSION = "2.7.4"
|
||||
|
||||
|
||||
def _generate_version(base_version):
|
||||
|
||||
@@ -0,0 +1,3 @@
|
||||
adlfs==2021.9.1
|
||||
azure-identity>=1.4.0
|
||||
knack
|
||||
@@ -0,0 +1,46 @@
|
||||
# See https://github.com/pyinstaller/pyinstaller/issues/1945
|
||||
ply>=3.9
|
||||
colorama>=0.3.9
|
||||
configobj>=5.0.6
|
||||
gitpython>3
|
||||
dulwich>=0.20.23
|
||||
pygit2>=1.5.0
|
||||
setuptools>=34.0.0
|
||||
nanotime>=0.5.2
|
||||
pyasn1>=0.4.1
|
||||
voluptuous>=0.11.7
|
||||
requests>=2.22.0
|
||||
# See https://github.com/bdcht/grandalf/issues/26
|
||||
grandalf==0.6
|
||||
distro>=1.3.0
|
||||
appdirs>=1.4.3
|
||||
ruamel.yaml>=0.17.11
|
||||
toml>=0.10.1
|
||||
funcy>=1.14
|
||||
pathspec>=0.6.0,<0.9.0
|
||||
shortuuid>=0.5.0
|
||||
tqdm>=4.45.0,<5
|
||||
packaging>=19.0
|
||||
zc.lockfile>=1.2.1
|
||||
flufl.lock>=3.2,<4
|
||||
win-unicode-console>=0.5; sys_platform == 'win32'
|
||||
pywin32>=225; sys_platform == 'win32' and python_version < '3.10'
|
||||
networkx>=2.5
|
||||
psutil>=5.8.0
|
||||
pydot>=1.2.4
|
||||
speedcopy>=2.0.1; python_version < '3.8' and sys_platform == 'win32'
|
||||
dataclasses==0.7; python_version < '3.7'
|
||||
importlib-metadata>=1.4; python_version < '3.8'
|
||||
flatten_dict>=0.4.1,<1
|
||||
tabulate>=0.8.7
|
||||
pygtrie>=2.3.2
|
||||
dpath>=2.0.2,<3
|
||||
shtab>=1.3.4,<2
|
||||
rich>=10.0.0
|
||||
dictdiffer>=0.8.1
|
||||
python-benedict>=0.21.1
|
||||
pyparsing==2.4.7
|
||||
typing_extensions>=3.10.0.2
|
||||
fsspec[http]>=2021.8.1
|
||||
aiohttp-retry==2.4.5
|
||||
diskcache>=5.2.1
|
||||
@@ -0,0 +1 @@
|
||||
pydrive2[fsspec]>=1.9.4
|
||||
@@ -0,0 +1 @@
|
||||
gcsfs==2021.8.1
|
||||
@@ -0,0 +1 @@
|
||||
pyarrow>=2.0.0; python_version < '3.10'
|
||||
@@ -0,0 +1 @@
|
||||
ossfs==2021.8.0
|
||||
@@ -0,0 +1,2 @@
|
||||
s3fs==2021.8.1
|
||||
aiobotocore[boto3]>1.0.1
|
||||
@@ -0,0 +1 @@
|
||||
sshfs>=2021.8.1
|
||||
@@ -0,0 +1 @@
|
||||
sshfs[gssapi]>=2021.8.1
|
||||
@@ -0,0 +1 @@
|
||||
tpi[ssh]>=0.0.0
|
||||
@@ -6,21 +6,19 @@ pytest-cov==2.12.1
|
||||
pytest-xdist==2.3.0
|
||||
pytest-mock==3.6.1
|
||||
pytest-lazy-fixture==0.6.3
|
||||
pytest-timeout==1.4.2
|
||||
pytest-docker==0.10.3
|
||||
|
||||
flaky==3.7.0
|
||||
mock==4.0.3
|
||||
rangehttpserver==1.2.0
|
||||
mock-ssh-server==0.9.0
|
||||
beautifulsoup4==4.9.3
|
||||
mock-ssh-server==0.9.1
|
||||
wget==3.2
|
||||
filelock==3.0.12
|
||||
wsgidav==3.1.1
|
||||
crc32c==2.2.post0
|
||||
xmltodict==0.12.0
|
||||
google-compute-engine==2.8.13
|
||||
google-cloud-storage==1.42.0
|
||||
google-cloud-storage==1.42.1
|
||||
urllib3==1.26.6
|
||||
dvclive>=0.2.1
|
||||
|
||||
@@ -0,0 +1 @@
|
||||
webdav4>=0.9.1
|
||||
@@ -0,0 +1 @@
|
||||
hdfs==2.6.0
|
||||
@@ -14,6 +14,8 @@ datas += copy_metadata("boto3")
|
||||
datas += copy_metadata("ossfs")
|
||||
datas += copy_metadata("sshfs")
|
||||
datas += copy_metadata("webdav4")
|
||||
datas += copy_metadata("aiohttp")
|
||||
datas += copy_metadata("aiohttp_retry")
|
||||
|
||||
# https://github.com/pypa/setuptools/issues/1963
|
||||
hiddenimports = ["pkg_resources.py2_warn"]
|
||||
|
||||
@@ -17,8 +17,6 @@ known_first_party=dvc,tests
|
||||
line_length=79
|
||||
|
||||
[tool:pytest]
|
||||
timeout = 600
|
||||
timeout_method = thread
|
||||
log_level = debug
|
||||
addopts = -ra
|
||||
markers =
|
||||
|
||||
@@ -46,79 +46,25 @@ class build_py(_build_py):
|
||||
_build_py.run(self)
|
||||
|
||||
|
||||
install_requires = [
|
||||
"ply>=3.9", # See https://github.com/pyinstaller/pyinstaller/issues/1945
|
||||
"colorama>=0.3.9",
|
||||
"configobj>=5.0.6",
|
||||
"gitpython>3",
|
||||
"dulwich>=0.20.23",
|
||||
"pygit2>=1.5.0",
|
||||
"setuptools>=34.0.0",
|
||||
"nanotime>=0.5.2",
|
||||
"pyasn1>=0.4.1",
|
||||
"voluptuous>=0.11.7",
|
||||
"requests>=2.22.0",
|
||||
"grandalf==0.6",
|
||||
"distro>=1.3.0",
|
||||
"appdirs>=1.4.3",
|
||||
"ruamel.yaml>=0.17.11",
|
||||
"toml>=0.10.1",
|
||||
"funcy>=1.14",
|
||||
"pathspec>=0.6.0,<0.9.0",
|
||||
"shortuuid>=0.5.0",
|
||||
"tqdm>=4.45.0,<5",
|
||||
"packaging>=19.0",
|
||||
"zc.lockfile>=1.2.1",
|
||||
"flufl.lock>=3.2,<4",
|
||||
"win-unicode-console>=0.5; sys_platform == 'win32'",
|
||||
"pywin32>=225; sys_platform == 'win32' and python_version < '3.10'",
|
||||
"networkx>=2.5",
|
||||
"psutil>=5.8.0",
|
||||
"pydot>=1.2.4",
|
||||
"speedcopy>=2.0.1; python_version < '3.8' and sys_platform == 'win32'",
|
||||
"dataclasses==0.7; python_version < '3.7'",
|
||||
"importlib-metadata>=1.4; python_version < '3.8'",
|
||||
"flatten_dict>=0.4.1,<1",
|
||||
"tabulate>=0.8.7",
|
||||
"pygtrie>=2.3.2",
|
||||
"dpath>=2.0.1,<3",
|
||||
"shtab>=1.3.4,<2",
|
||||
"rich>=10.0.0",
|
||||
"dictdiffer>=0.8.1",
|
||||
"python-benedict>=0.21.1",
|
||||
"pyparsing==2.4.7",
|
||||
"typing_extensions>=3.7.4; python_version < '3.10'",
|
||||
# until https://github.com/python/typing/issues/865 is fixed for python3.10
|
||||
"typing_extensions==3.10.0.0; python_version >= '3.10'",
|
||||
"fsspec>=2021.8.1",
|
||||
"diskcache>=5.2.1",
|
||||
]
|
||||
|
||||
|
||||
# Extra dependencies for remote integrations
|
||||
requirements = {
|
||||
path.stem: path.read_text().strip().splitlines()
|
||||
for path in Path("requirements").glob("*.txt")
|
||||
}
|
||||
|
||||
gs = ["gcsfs==2021.8.1"]
|
||||
gdrive = ["pydrive2[fsspec]>=1.9.2"]
|
||||
s3 = ["s3fs==2021.8.1", "aiobotocore[boto3]>1.0.1"]
|
||||
azure = ["adlfs==2021.8.2", "azure-identity>=1.4.0", "knack"]
|
||||
oss = ["ossfs==2021.8.0"]
|
||||
ssh = ["sshfs>=2021.8.1"]
|
||||
|
||||
hdfs = ["pyarrow>=2.0.0; python_version < '3.10'"]
|
||||
webhdfs = ["hdfs==2.5.8"]
|
||||
webdav = ["webdav4>=0.9.0"]
|
||||
# gssapi should not be included in all_remotes, because it doesn't have wheels
|
||||
# for linux and mac, so it will fail to compile if user doesn't have all the
|
||||
# requirements, including kerberos itself. Once all the wheels are available,
|
||||
# we can start shipping it by default.
|
||||
ssh_gssapi = ["sshfs[gssapi]>=2021.8.1"]
|
||||
all_remotes = gs + s3 + azure + ssh + oss + gdrive + hdfs + webhdfs + webdav
|
||||
|
||||
terraform = ["tpi[ssh]>=0.0.0"]
|
||||
|
||||
tests_requirements = (
|
||||
Path("test_requirements.txt").read_text().strip().splitlines()
|
||||
) + terraform
|
||||
install_requires = requirements.pop("default")
|
||||
requirements["all"] = [
|
||||
requirements
|
||||
for key, requirements in requirements.items()
|
||||
if key not in ("tests", "ssh_gssapi", "terraform")
|
||||
]
|
||||
requirements["tests"] += requirements["terraform"]
|
||||
requirements["dev"] = requirements["all"] + requirements["tests"]
|
||||
|
||||
setup(
|
||||
name="dvc",
|
||||
@@ -132,21 +78,7 @@ setup(
|
||||
download_url="https://github.com/iterative/dvc",
|
||||
license="Apache License 2.0",
|
||||
install_requires=install_requires,
|
||||
extras_require={
|
||||
"all": all_remotes,
|
||||
"gs": gs,
|
||||
"gdrive": gdrive,
|
||||
"s3": s3,
|
||||
"azure": azure,
|
||||
"oss": oss,
|
||||
"ssh": ssh,
|
||||
"ssh_gssapi": ssh_gssapi,
|
||||
"hdfs": hdfs,
|
||||
"webhdfs": webhdfs,
|
||||
"webdav": webdav,
|
||||
"terraform": terraform,
|
||||
"tests": tests_requirements,
|
||||
},
|
||||
extras_require=requirements,
|
||||
keywords="data-science data-version-control machine-learning git"
|
||||
" developer-tools reproducibility collaboration ai",
|
||||
python_requires=">=3.6",
|
||||
|
||||
@@ -5,6 +5,7 @@ import pytest
|
||||
|
||||
from .dir_helpers import * # noqa, pylint: disable=wildcard-import
|
||||
from .remotes import * # noqa, pylint: disable=wildcard-import
|
||||
from .utils.scriptify import scriptify
|
||||
|
||||
# Prevent updater and analytics from running their processes
|
||||
os.environ["DVC_TEST"] = "true"
|
||||
@@ -164,3 +165,6 @@ def custom_template(tmp_dir, dvc):
|
||||
template = tmp_dir / "custom_template.json"
|
||||
shutil.copy(tmp_dir / ".dvc" / "plots" / "default.json", template)
|
||||
return template
|
||||
|
||||
|
||||
scriptify_fixture = pytest.fixture(lambda: scriptify, name="scriptify")
|
||||
|
||||
@@ -49,12 +49,14 @@ import os
|
||||
import pathlib
|
||||
import sys
|
||||
from contextlib import contextmanager
|
||||
from functools import partialmethod
|
||||
from textwrap import dedent
|
||||
|
||||
import pytest
|
||||
from funcy import lmap, retry
|
||||
|
||||
from dvc.logger import disable_other_loggers
|
||||
from dvc.utils import serialize
|
||||
from dvc.utils.fs import makedirs
|
||||
|
||||
__all__ = [
|
||||
@@ -250,6 +252,22 @@ class TmpDir(pathlib.Path):
|
||||
def hash_to_path_info(self, hash_):
|
||||
return self / hash_[0:2] / hash_[2:]
|
||||
|
||||
def dump(self, *args, **kwargs):
|
||||
return serialize.DUMPERS[self.suffix](self, *args, **kwargs)
|
||||
|
||||
def parse(self, *args, **kwargs):
|
||||
return serialize.LOADERS[self.suffix](self, *args, **kwargs)
|
||||
|
||||
def modify(self, *args, **kwargs):
|
||||
return serialize.MODIFIERS[self.suffix](self, *args, **kwargs)
|
||||
|
||||
load_yaml = partialmethod(serialize.load_yaml)
|
||||
dump_yaml = partialmethod(serialize.dump_yaml)
|
||||
load_json = partialmethod(serialize.load_json)
|
||||
dump_json = partialmethod(serialize.dump_json)
|
||||
load_toml = partialmethod(serialize.load_toml)
|
||||
dump_toml = partialmethod(serialize.dump_toml)
|
||||
|
||||
|
||||
def _coerce_filenames(filenames):
|
||||
if isinstance(filenames, (str, bytes, pathlib.PurePath)):
|
||||
|
||||
@@ -88,3 +88,17 @@ def checkpoint_stage(tmp_dir, scm, dvc, mocker):
|
||||
scm.commit("init")
|
||||
stage.iterations = DEFAULT_ITERATIONS
|
||||
return stage
|
||||
|
||||
|
||||
@pytest.fixture
|
||||
def http_auth_patch(mocker):
|
||||
from dulwich.client import HTTPUnauthorized
|
||||
|
||||
url = "https://0.0.0.0"
|
||||
client = mocker.MagicMock()
|
||||
client.get_refs.side_effect = HTTPUnauthorized("", url)
|
||||
client.send_pack.side_effect = HTTPUnauthorized("", url)
|
||||
|
||||
patch = mocker.patch("dulwich.client.get_transport_and_path")
|
||||
patch.return_value = (client, url)
|
||||
return url
|
||||
|
||||
@@ -8,7 +8,7 @@ from funcy import first
|
||||
|
||||
from dvc.dvcfile import PIPELINE_FILE
|
||||
from dvc.repo.experiments.utils import exp_refs_by_rev
|
||||
from dvc.utils.serialize import PythonFileCorruptedError, load_yaml
|
||||
from dvc.utils.serialize import PythonFileCorruptedError
|
||||
from tests.func.test_repro_multistage import COPY_SCRIPT
|
||||
|
||||
|
||||
@@ -660,9 +660,9 @@ def test_modified_data_dep(tmp_dir, scm, dvc, workspace, params, target):
|
||||
|
||||
|
||||
def test_exp_run_recursive(tmp_dir, scm, dvc, run_copy_metrics):
|
||||
tmp_dir.dvc_gen("metric_t.json", "foo: 1")
|
||||
tmp_dir.dvc_gen("metric_t.json", '{"foo": 1}')
|
||||
run_copy_metrics(
|
||||
"metric_t.json", "metric.json", metrics=["metric.json"], no_exec=True
|
||||
)
|
||||
assert dvc.experiments.run(".", recursive=True)
|
||||
assert load_yaml(tmp_dir / "metric.json") == {"foo": 1}
|
||||
assert (tmp_dir / "metric.json").parse() == {"foo": 1}
|
||||
|
||||
@@ -0,0 +1,34 @@
|
||||
import os
|
||||
|
||||
from dvc.command.experiments import CmdExperimentsInit
|
||||
from dvc.main import main
|
||||
from dvc.utils.serialize import load_yaml
|
||||
|
||||
|
||||
def test_init(tmp_dir, dvc):
|
||||
tmp_dir.gen(
|
||||
{
|
||||
CmdExperimentsInit.CODE: {"copy.py": ""},
|
||||
"data": "data",
|
||||
"params.yaml": '{"foo": 1}',
|
||||
"dvclive": {},
|
||||
"plots": {},
|
||||
}
|
||||
)
|
||||
code_path = os.path.join(CmdExperimentsInit.CODE, "copy.py")
|
||||
script = f"python {code_path}"
|
||||
|
||||
assert main(["exp", "init", script]) == 0
|
||||
assert load_yaml(tmp_dir / "dvc.yaml") == {
|
||||
"stages": {
|
||||
"default": {
|
||||
"cmd": script,
|
||||
"deps": ["data", "src"],
|
||||
"live": {"dvclive": {"html": True, "summary": True}},
|
||||
"metrics": [{"metrics.json": {"cache": False}}],
|
||||
"outs": ["models"],
|
||||
"params": ["foo"],
|
||||
"plots": [{"plots": {"cache": False}}],
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -252,3 +252,37 @@ def test_push_pull_cache(
|
||||
path = os.path.join(dvc.odb.local.cache_dir, hash_[:2], hash_[2:])
|
||||
assert os.path.exists(path)
|
||||
assert open(path).read() == str(x)
|
||||
|
||||
|
||||
def test_auth_error_list(tmp_dir, scm, dvc, http_auth_patch):
|
||||
from dvc.scm.base import GitAuthError
|
||||
|
||||
with pytest.raises(
|
||||
GitAuthError,
|
||||
match=f"HTTP Git authentication is not supported: '{http_auth_patch}'",
|
||||
):
|
||||
dvc.experiments.ls(git_remote=http_auth_patch)
|
||||
|
||||
|
||||
def test_auth_error_pull(tmp_dir, scm, dvc, http_auth_patch):
|
||||
from dvc.scm.base import GitAuthError
|
||||
|
||||
with pytest.raises(
|
||||
GitAuthError,
|
||||
match=f"HTTP Git authentication is not supported: '{http_auth_patch}'",
|
||||
):
|
||||
dvc.experiments.pull(http_auth_patch, "foo")
|
||||
|
||||
|
||||
def test_auth_error_push(tmp_dir, scm, dvc, exp_stage, http_auth_patch):
|
||||
from dvc.scm.base import GitAuthError
|
||||
|
||||
results = dvc.experiments.run(exp_stage.addressing, params=["foo=2"])
|
||||
exp = first(results)
|
||||
ref_info = first(exp_refs_by_rev(scm, exp))
|
||||
|
||||
with pytest.raises(
|
||||
GitAuthError,
|
||||
match=f"HTTP Git authentication is not supported: '{http_auth_patch}'",
|
||||
):
|
||||
dvc.experiments.push(http_auth_patch, ref_info.name)
|
||||
|
||||
@@ -9,8 +9,9 @@ from dvc.exceptions import InvalidArgumentError
|
||||
from dvc.main import main
|
||||
from dvc.repo.experiments.base import EXPS_STASH, ExpRefInfo
|
||||
from dvc.repo.experiments.executor.base import BaseExecutor, ExecutorInfo
|
||||
from dvc.repo.experiments.utils import exp_refs_by_rev
|
||||
from dvc.utils.fs import makedirs
|
||||
from dvc.utils.serialize import YAMLFileCorruptedError, dump_yaml
|
||||
from dvc.utils.serialize import YAMLFileCorruptedError
|
||||
from tests.func.test_repro_multistage import COPY_SCRIPT
|
||||
|
||||
|
||||
@@ -269,6 +270,10 @@ def test_show_filter(
|
||||
included,
|
||||
excluded,
|
||||
):
|
||||
from contextlib import contextmanager
|
||||
|
||||
from dvc.ui import ui
|
||||
|
||||
capsys.readouterr()
|
||||
div = "│" if os.name == "nt" else "┃"
|
||||
|
||||
@@ -281,7 +286,7 @@ def test_show_filter(
|
||||
"train/bar": 1,
|
||||
"nested": {"foo": 1, "bar": 1},
|
||||
}
|
||||
dump_yaml(params_file, params_data)
|
||||
(tmp_dir / params_file).dump(params_data)
|
||||
|
||||
dvc.run(
|
||||
cmd="python copy.py params.yaml metrics.yaml",
|
||||
@@ -312,13 +317,30 @@ def test_show_filter(
|
||||
if e_params is not None:
|
||||
command.append(f"--exclude-params={e_params}")
|
||||
|
||||
assert main(command) == 0
|
||||
@contextmanager
|
||||
def console_with(console, width):
|
||||
console_options = console.options
|
||||
original = console_options.max_width
|
||||
con_width = console._width
|
||||
|
||||
try:
|
||||
console_options.max_width = width
|
||||
console._width = width
|
||||
yield
|
||||
finally:
|
||||
console_options.max_width = original
|
||||
console._width = con_width
|
||||
|
||||
with console_with(ui.rich_console, 255):
|
||||
assert main(command) == 0
|
||||
cap = capsys.readouterr()
|
||||
|
||||
for i in included:
|
||||
assert f"{div} {i} {div}" in cap.out
|
||||
assert f"{div} params.yaml:{i} {div}" in cap.out
|
||||
assert f"{div} metrics.yaml:{i} {div}" in cap.out
|
||||
for e in excluded:
|
||||
assert f"{div} {e} {div}" not in cap.out
|
||||
assert f"{div} params.yaml:{e} {div}" not in cap.out
|
||||
assert f"{div} metrics.yaml:{e} {div}" not in cap.out
|
||||
|
||||
|
||||
def test_show_multiple_commits(tmp_dir, scm, dvc, exp_stage):
|
||||
@@ -364,7 +386,7 @@ def test_show_running_workspace(tmp_dir, scm, dvc, exp_stage, capsys):
|
||||
makedirs(pid_dir, True)
|
||||
info = ExecutorInfo(None, None, None, BaseExecutor.DEFAULT_LOCATION)
|
||||
pidfile = os.path.join(pid_dir, f"workspace{BaseExecutor.PIDFILE_EXT}")
|
||||
dump_yaml(pidfile, info.to_dict())
|
||||
(tmp_dir / pidfile).dump(info.to_dict())
|
||||
|
||||
assert dvc.experiments.show()["workspace"] == {
|
||||
"baseline": {
|
||||
@@ -395,7 +417,7 @@ def test_show_running_executor(tmp_dir, scm, dvc, exp_stage):
|
||||
makedirs(pid_dir, True)
|
||||
info = ExecutorInfo(None, None, None, BaseExecutor.DEFAULT_LOCATION)
|
||||
pidfile = os.path.join(pid_dir, f"{exp_rev}{BaseExecutor.PIDFILE_EXT}")
|
||||
dump_yaml(pidfile, info.to_dict())
|
||||
(tmp_dir / pidfile).dump(info.to_dict())
|
||||
|
||||
results = dvc.experiments.show()
|
||||
exp_data = get_in(results, [baseline_rev, exp_rev, "data"])
|
||||
@@ -412,7 +434,6 @@ def test_show_running_checkpoint(
|
||||
):
|
||||
from dvc.repo.experiments.base import EXEC_BRANCH
|
||||
from dvc.repo.experiments.executor.local import TempDirExecutor
|
||||
from dvc.repo.experiments.utils import exp_refs_by_rev
|
||||
|
||||
baseline_rev = scm.get_rev()
|
||||
dvc.experiments.run(
|
||||
@@ -434,7 +455,7 @@ def test_show_running_checkpoint(
|
||||
info = ExecutorInfo(123, "foo.git", baseline_rev, executor)
|
||||
rev = "workspace" if workspace else stash_rev
|
||||
pidfile = os.path.join(pid_dir, f"{rev}{BaseExecutor.PIDFILE_EXT}")
|
||||
dump_yaml(pidfile, info.to_dict())
|
||||
(tmp_dir / pidfile).dump(info.to_dict())
|
||||
|
||||
mocker.patch.object(
|
||||
BaseExecutor, "fetch_exps", return_value=[str(exp_ref)]
|
||||
@@ -471,3 +492,49 @@ def test_show_with_broken_repo(tmp_dir, scm, dvc, exp_stage, caplog):
|
||||
|
||||
paths = ["workspace", "baseline", "error"]
|
||||
assert isinstance(get_in(result, paths), YAMLFileCorruptedError)
|
||||
|
||||
|
||||
def test_show_csv(tmp_dir, scm, dvc, exp_stage, capsys):
|
||||
import time
|
||||
|
||||
baseline_rev = scm.get_rev()
|
||||
|
||||
def _get_rev_isotimestamp(rev):
|
||||
return datetime.fromtimestamp(
|
||||
scm.gitpython.repo.rev_parse(rev).committed_date
|
||||
).isoformat()
|
||||
|
||||
result1 = dvc.experiments.run(exp_stage.addressing, params=["foo=2"])
|
||||
rev1 = first(result1)
|
||||
ref_info1 = first(exp_refs_by_rev(scm, rev1))
|
||||
time.sleep(1)
|
||||
result2 = dvc.experiments.run(exp_stage.addressing, params=["foo=3"])
|
||||
rev2 = first(result2)
|
||||
ref_info2 = first(exp_refs_by_rev(scm, rev2))
|
||||
|
||||
capsys.readouterr()
|
||||
assert main(["exp", "show", "--show-csv"]) == 0
|
||||
cap = capsys.readouterr()
|
||||
assert (
|
||||
"Experiment,rev,typ,Created,parent,metrics.yaml:foo,params.yaml:foo"
|
||||
in cap.out
|
||||
)
|
||||
assert ",workspace,baseline,,,3,3" in cap.out
|
||||
assert (
|
||||
"master,{},baseline,{},,1,1".format(
|
||||
baseline_rev[:7], _get_rev_isotimestamp(baseline_rev)
|
||||
)
|
||||
in cap.out
|
||||
)
|
||||
assert (
|
||||
"{},{},branch_base,{},,2,2".format(
|
||||
ref_info1.name, rev1[:7], _get_rev_isotimestamp(rev1)
|
||||
)
|
||||
in cap.out
|
||||
)
|
||||
assert (
|
||||
"{},{},branch_commit,{},,3,3".format(
|
||||
ref_info2.name, rev2[:7], _get_rev_isotimestamp(rev2)
|
||||
)
|
||||
in cap.out
|
||||
)
|
||||
|
||||
@@ -0,0 +1,123 @@
|
||||
import os
|
||||
import textwrap
|
||||
|
||||
import pytest
|
||||
|
||||
from dvc.main import main
|
||||
|
||||
CONFIG_TEXT = textwrap.dedent(
|
||||
"""\
|
||||
[feature]
|
||||
machine = true
|
||||
['machine \"foo\"']
|
||||
cloud = aws
|
||||
"""
|
||||
)
|
||||
|
||||
|
||||
@pytest.mark.parametrize(
|
||||
"slot,value",
|
||||
[
|
||||
("region", "us-west"),
|
||||
("image", "iterative-cml"),
|
||||
("name", "iterative_test"),
|
||||
("spot", "True"),
|
||||
("spot_price", "1.2345"),
|
||||
("spot_price", "12345"),
|
||||
("instance_hdd_size", "10"),
|
||||
("instance_type", "l"),
|
||||
("instance_gpu", "tesla"),
|
||||
("ssh_private", "secret"),
|
||||
],
|
||||
)
|
||||
def test_machine_modify_susccess(tmp_dir, dvc, slot, value):
|
||||
(tmp_dir / ".dvc" / "config").write_text(CONFIG_TEXT)
|
||||
assert main(["machine", "modify", "foo", slot, value]) == 0
|
||||
assert (
|
||||
tmp_dir / ".dvc" / "config"
|
||||
).read_text() == CONFIG_TEXT + f" {slot} = {value}\n"
|
||||
assert main(["machine", "modify", "--unset", "foo", slot]) == 0
|
||||
assert (tmp_dir / ".dvc" / "config").read_text() == CONFIG_TEXT
|
||||
|
||||
|
||||
def test_machine_modify_startup_script(tmp_dir, dvc):
|
||||
slot, value = "startup_script", "start.sh"
|
||||
(tmp_dir / ".dvc" / "config").write_text(CONFIG_TEXT)
|
||||
assert main(["machine", "modify", "foo", slot, value]) == 0
|
||||
assert (
|
||||
tmp_dir / ".dvc" / "config"
|
||||
).read_text() == CONFIG_TEXT + f" {slot} = ../{value}\n"
|
||||
assert main(["machine", "modify", "--unset", "foo", slot]) == 0
|
||||
assert (tmp_dir / ".dvc" / "config").read_text() == CONFIG_TEXT
|
||||
|
||||
|
||||
@pytest.mark.parametrize(
|
||||
"slot,value,msg",
|
||||
[
|
||||
(
|
||||
"region",
|
||||
"other-west",
|
||||
"expected one of us-west, us-east, eu-west, eu-north",
|
||||
),
|
||||
("spot_price", "NUM", "expected float"),
|
||||
("instance_hdd_size", "BIG", "expected int"),
|
||||
],
|
||||
)
|
||||
def test_machine_modify_fail(tmp_dir, dvc, caplog, slot, value, msg):
|
||||
(tmp_dir / ".dvc" / "config").write_text(CONFIG_TEXT)
|
||||
|
||||
assert main(["machine", "modify", "foo", slot, value]) == 251
|
||||
assert (tmp_dir / ".dvc" / "config").read_text() == CONFIG_TEXT
|
||||
assert msg in caplog.text
|
||||
|
||||
|
||||
FULL_CONFIG_TEXT = textwrap.dedent(
|
||||
"""\
|
||||
[feature]
|
||||
machine = true
|
||||
['machine \"bar\"']
|
||||
cloud = azure
|
||||
['machine \"foo\"']
|
||||
cloud = aws
|
||||
region = us-west
|
||||
image = iterative-cml
|
||||
name = iterative_test
|
||||
spot = True
|
||||
spot_price = 1.2345
|
||||
instance_hdd_size = 10
|
||||
instance_type = l
|
||||
instance_gpu = tesla
|
||||
ssh_private = secret
|
||||
startup_script = {}
|
||||
""".format(
|
||||
os.path.join("..", "start.sh")
|
||||
)
|
||||
)
|
||||
|
||||
|
||||
def test_machine_list(tmp_dir, dvc, capsys):
|
||||
(tmp_dir / ".dvc" / "config").write_text(FULL_CONFIG_TEXT)
|
||||
|
||||
assert main(["machine", "list"]) == 0
|
||||
cap = capsys.readouterr()
|
||||
assert "cloud=azure" in cap.out
|
||||
|
||||
assert main(["machine", "list", "foo"]) == 0
|
||||
cap = capsys.readouterr()
|
||||
assert "cloud=azure" not in cap.out
|
||||
assert "cloud=aws" in cap.out
|
||||
assert "region=us-west" in cap.out
|
||||
assert "image=iterative-cml" in cap.out
|
||||
assert "name=iterative_test" in cap.out
|
||||
assert "spot=True" in cap.out
|
||||
assert "spot_price=1.2345" in cap.out
|
||||
assert "instance_hdd_size=10" in cap.out
|
||||
assert "instance_type=l" in cap.out
|
||||
assert "instance_gpu=tesla" in cap.out
|
||||
assert "ssh_private=secret" in cap.out
|
||||
assert (
|
||||
"startup_script={}".format(
|
||||
os.path.join(tmp_dir, ".dvc", "..", "start.sh")
|
||||
)
|
||||
in cap.out
|
||||
)
|
||||
@@ -1,7 +1,6 @@
|
||||
import json
|
||||
|
||||
from dvc.main import main
|
||||
from dvc.utils.serialize import dump_yaml
|
||||
|
||||
|
||||
def test_metrics_diff_simple(tmp_dir, scm, dvc, run_copy_metrics):
|
||||
@@ -22,7 +21,7 @@ def test_metrics_diff_simple(tmp_dir, scm, dvc, run_copy_metrics):
|
||||
def test_metrics_diff_yaml(tmp_dir, scm, dvc, run_copy_metrics):
|
||||
def _gen(val):
|
||||
metrics = {"a": {"b": {"c": val, "d": 1, "e": str(val)}}}
|
||||
dump_yaml("m_temp.yaml", metrics)
|
||||
(tmp_dir / "m_temp.yaml").dump(metrics)
|
||||
run_copy_metrics(
|
||||
"m_temp.yaml", "m.yaml", metrics=["m.yaml"], commit=str(val)
|
||||
)
|
||||
@@ -39,7 +38,7 @@ def test_metrics_diff_yaml(tmp_dir, scm, dvc, run_copy_metrics):
|
||||
def test_metrics_diff_json(tmp_dir, scm, dvc, run_copy_metrics):
|
||||
def _gen(val):
|
||||
metrics = {"a": {"b": {"c": val, "d": 1, "e": str(val)}}}
|
||||
tmp_dir.gen({"m_temp.json": json.dumps(metrics)})
|
||||
(tmp_dir / "m_temp.json").dump(metrics)
|
||||
run_copy_metrics(
|
||||
"m_temp.json", "m.json", metrics=["m.json"], commit=str(val)
|
||||
)
|
||||
@@ -55,7 +54,7 @@ def test_metrics_diff_json(tmp_dir, scm, dvc, run_copy_metrics):
|
||||
def test_metrics_diff_json_unchanged(tmp_dir, scm, dvc, run_copy_metrics):
|
||||
def _gen(val):
|
||||
metrics = {"a": {"b": {"c": val, "d": 1, "e": str(val)}}}
|
||||
tmp_dir.gen({"m_temp.json": json.dumps(metrics)})
|
||||
(tmp_dir / "m_temp.json").dump(metrics)
|
||||
run_copy_metrics(
|
||||
"m_temp.json", "m.json", metrics=["m.json"], commit=str(val)
|
||||
)
|
||||
@@ -69,7 +68,7 @@ def test_metrics_diff_json_unchanged(tmp_dir, scm, dvc, run_copy_metrics):
|
||||
|
||||
def test_metrics_diff_broken_json(tmp_dir, scm, dvc, run_copy_metrics):
|
||||
metrics = {"a": {"b": {"c": 1, "d": 1, "e": "3"}}}
|
||||
tmp_dir.gen({"m_temp.json": json.dumps(metrics)})
|
||||
(tmp_dir / "m_temp.json").dump(metrics)
|
||||
run_copy_metrics(
|
||||
"m_temp.json",
|
||||
"m.json",
|
||||
@@ -94,7 +93,7 @@ def test_metrics_diff_no_metrics(tmp_dir, scm, dvc):
|
||||
|
||||
def test_metrics_diff_new_metric(tmp_dir, scm, dvc, run_copy_metrics):
|
||||
metrics = {"a": {"b": {"c": 1, "d": 1, "e": "3"}}}
|
||||
tmp_dir.gen({"m_temp.json": json.dumps(metrics)})
|
||||
(tmp_dir / "m_temp.json").dump(metrics)
|
||||
run_copy_metrics("m_temp.json", "m.json", metrics_no_cache=["m.json"])
|
||||
|
||||
assert dvc.metrics.diff() == {
|
||||
@@ -107,7 +106,7 @@ def test_metrics_diff_new_metric(tmp_dir, scm, dvc, run_copy_metrics):
|
||||
|
||||
def test_metrics_diff_deleted_metric(tmp_dir, scm, dvc, run_copy_metrics):
|
||||
metrics = {"a": {"b": {"c": 1, "d": 1, "e": "3"}}}
|
||||
tmp_dir.gen({"m_temp.json": json.dumps(metrics)})
|
||||
(tmp_dir / "m_temp.json").dump(metrics)
|
||||
run_copy_metrics(
|
||||
"m_temp.json",
|
||||
"m.json",
|
||||
|
||||
@@ -6,10 +6,9 @@ from funcy import get_in
|
||||
|
||||
from dvc.dvcfile import PIPELINE_FILE
|
||||
from dvc.exceptions import OverlappingOutputPathsError
|
||||
from dvc.path_info import PathInfo
|
||||
from dvc.repo import Repo
|
||||
from dvc.utils.fs import remove
|
||||
from dvc.utils.serialize import YAMLFileCorruptedError, dump_yaml, modify_yaml
|
||||
from dvc.utils.serialize import YAMLFileCorruptedError
|
||||
|
||||
|
||||
def test_show_simple(tmp_dir, dvc, run_copy_metrics):
|
||||
@@ -227,10 +226,10 @@ def test_show_no_metrics_files(tmp_dir, dvc, caplog):
|
||||
def test_metrics_show_overlap(
|
||||
tmp_dir, dvc, run_copy_metrics, clear_before_run
|
||||
):
|
||||
data_dir = PathInfo("data")
|
||||
(tmp_dir / data_dir).mkdir()
|
||||
data_dir = tmp_dir / "data"
|
||||
data_dir.mkdir()
|
||||
|
||||
dump_yaml(data_dir / "m1_temp.yaml", {"a": {"b": {"c": 2, "d": 1}}})
|
||||
(data_dir / "m1_temp.yaml").dump({"a": {"b": {"c": 2, "d": 1}}})
|
||||
run_copy_metrics(
|
||||
str(data_dir / "m1_temp.yaml"),
|
||||
str(data_dir / "m1.yaml"),
|
||||
@@ -239,7 +238,7 @@ def test_metrics_show_overlap(
|
||||
name="cp-m1",
|
||||
metrics=[str(data_dir / "m1.yaml")],
|
||||
)
|
||||
with modify_yaml("dvc.yaml") as d:
|
||||
with (tmp_dir / "dvc.yaml").modify() as d:
|
||||
# trying to make an output overlaps error
|
||||
d["stages"]["corrupted-stage"] = {
|
||||
"cmd": "mkdir data",
|
||||
|
||||
@@ -76,7 +76,7 @@ def test_partial_upload(tmp_dir, dvc, index, mocker):
|
||||
tmp_dir.dvc_gen({"foo": "foo content"})
|
||||
tmp_dir.dvc_gen({"bar": {"baz": "baz content"}})
|
||||
|
||||
original = LocalFileSystem._upload
|
||||
original = LocalFileSystem.upload
|
||||
|
||||
def unreliable_upload(self, from_file, to_info, name=None, **kwargs):
|
||||
if "baz" in name:
|
||||
|
||||
@@ -1,5 +1,4 @@
|
||||
from dvc.utils import relpath
|
||||
from dvc.utils.serialize import dump_yaml
|
||||
|
||||
|
||||
def test_diff_no_params(tmp_dir, scm, dvc):
|
||||
@@ -140,7 +139,7 @@ def test_no_commits(tmp_dir):
|
||||
def test_vars_shows_on_params_diff(tmp_dir, scm, dvc):
|
||||
params_file = tmp_dir / "test_params.yaml"
|
||||
param_data = {"vars": {"model1": {"epoch": 15}, "model2": {"epoch": 35}}}
|
||||
dump_yaml(params_file, param_data)
|
||||
(tmp_dir / params_file).dump(param_data)
|
||||
d = {
|
||||
"vars": ["test_params.yaml"],
|
||||
"stages": {
|
||||
@@ -150,7 +149,7 @@ def test_vars_shows_on_params_diff(tmp_dir, scm, dvc):
|
||||
}
|
||||
},
|
||||
}
|
||||
dump_yaml("dvc.yaml", d)
|
||||
(tmp_dir / "dvc.yaml").dump(d)
|
||||
assert dvc.params.diff() == {
|
||||
"test_params.yaml": {
|
||||
"vars.model1.epoch": {"new": 15, "old": None},
|
||||
@@ -161,7 +160,7 @@ def test_vars_shows_on_params_diff(tmp_dir, scm, dvc):
|
||||
scm.commit("added stages")
|
||||
|
||||
param_data["vars"]["model1"]["epoch"] = 20
|
||||
dump_yaml(params_file, param_data)
|
||||
(tmp_dir / params_file).dump(param_data)
|
||||
assert dvc.params.diff() == {
|
||||
"test_params.yaml": {
|
||||
"vars.model1.epoch": {"new": 20, "old": 15, "diff": 5}
|
||||
|
||||
@@ -10,7 +10,6 @@ from dvc.parsing import ResolveError
|
||||
from dvc.parsing.context import Context
|
||||
from dvc.parsing.interpolate import embrace
|
||||
from dvc.utils.humanize import join
|
||||
from dvc.utils.serialize import dump_yaml
|
||||
|
||||
from . import make_entry_definition, make_foreach_def
|
||||
|
||||
@@ -133,7 +132,7 @@ def test_interpolate_non_string(tmp_dir, dvc):
|
||||
|
||||
|
||||
def test_partial_vars_doesnot_exist(tmp_dir, dvc):
|
||||
dump_yaml("test_params.yaml", {"sub1": "sub1", "sub2": "sub2"})
|
||||
(tmp_dir / "test_params.yaml").dump({"sub1": "sub1", "sub2": "sub2"})
|
||||
|
||||
definition = make_entry_definition(
|
||||
tmp_dir,
|
||||
@@ -281,7 +280,7 @@ def test_item_key_in_generated_stage_vars(tmp_dir, dvc, redefine, from_file):
|
||||
context = Context(foo="bar")
|
||||
vars_ = [redefine]
|
||||
if from_file:
|
||||
dump_yaml("test_params.yaml", redefine)
|
||||
(tmp_dir / "test_params.yaml").dump(redefine)
|
||||
vars_ = ["test_params.yaml"]
|
||||
|
||||
definition = make_foreach_def(
|
||||
|
||||
@@ -5,7 +5,6 @@ import pytest
|
||||
|
||||
from dvc.parsing import DEFAULT_PARAMS_FILE, DataResolver, ForeachDefinition
|
||||
from dvc.parsing.context import Context
|
||||
from dvc.utils.serialize import dump_yaml
|
||||
|
||||
|
||||
def test_with_simple_list_data(tmp_dir, dvc):
|
||||
@@ -111,7 +110,7 @@ def test_foreach_interpolate_with_composite_data(
|
||||
def test_params_file_with_dict_tracked(tmp_dir, dvc):
|
||||
foreach_data = {"model1": {"thresh": "foo"}, "model2": {"thresh": "bar"}}
|
||||
params = {"models": foreach_data}
|
||||
dump_yaml("params.yaml", params)
|
||||
(tmp_dir / "params.yaml").dump(params)
|
||||
|
||||
resolver = DataResolver(dvc, tmp_dir, {})
|
||||
data = {"foreach": "${models}", "do": {"cmd": "echo ${item.thresh}"}}
|
||||
@@ -132,7 +131,7 @@ def test_params_file_with_dict_tracked(tmp_dir, dvc):
|
||||
def test_params_file_tracked_for_composite_list(tmp_dir, dvc):
|
||||
foreach_data = [{"thresh": "foo"}, {"thresh": "bar"}]
|
||||
params = {"models": foreach_data}
|
||||
dump_yaml("params.yaml", params)
|
||||
(tmp_dir / "params.yaml").dump(params)
|
||||
|
||||
resolver = DataResolver(dvc, tmp_dir, {})
|
||||
data = {"foreach": "${models}", "do": {"cmd": "echo ${item.thresh}"}}
|
||||
@@ -178,8 +177,8 @@ def test_foreach_partial_interpolations(tmp_dir, dvc):
|
||||
|
||||
|
||||
def test_mixed_vars_for_foreach_data(tmp_dir, dvc):
|
||||
dump_yaml("params.yaml", {"models": {"model1": "foo"}})
|
||||
dump_yaml("test_params.yaml", {"models": {"model2": "bar"}})
|
||||
(tmp_dir / "params.yaml").dump({"models": {"model1": "foo"}})
|
||||
(tmp_dir / "test_params.yaml").dump({"models": {"model2": "bar"}})
|
||||
|
||||
resolver = DataResolver(dvc, tmp_dir, {"vars": ["test_params.yaml"]})
|
||||
data = {"foreach": "${models}", "do": {"cmd": "echo ${item}"}}
|
||||
@@ -197,12 +196,10 @@ def test_mixed_vars_for_foreach_data(tmp_dir, dvc):
|
||||
|
||||
|
||||
def test_mixed_vars_for_foreach_data_2(tmp_dir, dvc):
|
||||
dump_yaml(
|
||||
"params.yaml",
|
||||
(tmp_dir / "params.yaml").dump(
|
||||
{"models": {"model1": {"thresh": 10}, "model2": {"thresh": 15}}},
|
||||
)
|
||||
dump_yaml(
|
||||
"test_params.yaml",
|
||||
(tmp_dir / "test_params.yaml").dump(
|
||||
{"models": {"model1": {"epochs": 5}, "model2": {"epochs": 10}}},
|
||||
)
|
||||
|
||||
@@ -288,9 +285,9 @@ def test_foreach_with_local_vars(tmp_dir, dvc):
|
||||
],
|
||||
)
|
||||
def test_foreach_with_imported_vars(tmp_dir, dvc, local_import):
|
||||
dump_yaml("params.yaml", {"models": {"model1": {"thresh": "foo"}}})
|
||||
dump_yaml(
|
||||
"test_params.yaml", {"train": {"epochs": 10}, "prepare": {"nums": 25}}
|
||||
(tmp_dir / "params.yaml").dump({"models": {"model1": {"thresh": "foo"}}})
|
||||
(tmp_dir / "test_params.yaml").dump(
|
||||
{"train": {"epochs": 10}, "prepare": {"nums": 25}}
|
||||
)
|
||||
resolver = DataResolver(dvc, tmp_dir, {})
|
||||
foreach_data = ["foo", "bar"]
|
||||
@@ -321,13 +318,12 @@ def test_foreach_with_imported_vars(tmp_dir, dvc, local_import):
|
||||
def test_foreach_with_interpolated_wdir_and_local_vars(
|
||||
tmp_dir, dvc, local_import
|
||||
):
|
||||
dump_yaml("params.yaml", {"models": {"model1": {"thresh": "foo"}}})
|
||||
(tmp_dir / "params.yaml").dump({"models": {"model1": {"thresh": "foo"}}})
|
||||
|
||||
for i in range(5):
|
||||
build_dir = tmp_dir / ("model-" + str(i))
|
||||
build_dir.mkdir()
|
||||
dump_yaml(
|
||||
build_dir / "params.yaml",
|
||||
(build_dir / "params.yaml").dump(
|
||||
{"train": {"epochs": 1 + i}, "prepare": {"nums": 10 * i}},
|
||||
)
|
||||
|
||||
|
||||
@@ -6,7 +6,6 @@ from dvc.dependency import _merge_params
|
||||
from dvc.parsing import DEFAULT_PARAMS_FILE, DataResolver
|
||||
from dvc.parsing.context import recurse_not_a_node
|
||||
from dvc.path_info import PathInfo
|
||||
from dvc.utils.serialize import dump_json, dump_yaml
|
||||
|
||||
from . import (
|
||||
CONTEXT_DATA,
|
||||
@@ -30,7 +29,7 @@ def assert_stage_equal(d1, d2):
|
||||
|
||||
|
||||
def test_simple(tmp_dir, dvc):
|
||||
dump_yaml(tmp_dir / DEFAULT_PARAMS_FILE, CONTEXT_DATA)
|
||||
(tmp_dir / DEFAULT_PARAMS_FILE).dump(CONTEXT_DATA)
|
||||
resolver = DataResolver(
|
||||
dvc, PathInfo(str(tmp_dir)), deepcopy(TEMPLATED_DVC_YAML_DATA)
|
||||
)
|
||||
@@ -46,7 +45,7 @@ def test_vars_import(tmp_dir, dvc):
|
||||
Test that different file can be loaded using `vars`
|
||||
instead of default params.yaml.
|
||||
"""
|
||||
dump_yaml(tmp_dir / "params2.yaml", CONTEXT_DATA)
|
||||
(tmp_dir / "params2.yaml").dump(CONTEXT_DATA)
|
||||
d = deepcopy(TEMPLATED_DVC_YAML_DATA)
|
||||
d["vars"] = ["params2.yaml"]
|
||||
resolver = DataResolver(dvc, PathInfo(str(tmp_dir)), d)
|
||||
@@ -68,7 +67,7 @@ def test_vars_and_params_import(tmp_dir, dvc):
|
||||
"vars": [DEFAULT_PARAMS_FILE, {"dict": {"foo": "foobar"}}],
|
||||
"stages": {"stage1": {"cmd": "echo ${dict.foo} ${dict.bar}"}},
|
||||
}
|
||||
dump_yaml(tmp_dir / DEFAULT_PARAMS_FILE, {"dict": {"bar": "bar"}})
|
||||
(tmp_dir / DEFAULT_PARAMS_FILE).dump({"dict": {"bar": "bar"}})
|
||||
resolver = DataResolver(dvc, PathInfo(str(tmp_dir)), d)
|
||||
|
||||
assert_stage_equal(
|
||||
@@ -96,8 +95,8 @@ def test_stage_with_wdir(tmp_dir, dvc):
|
||||
|
||||
data_dir = tmp_dir / "data"
|
||||
data_dir.mkdir()
|
||||
dump_yaml(tmp_dir / DEFAULT_PARAMS_FILE, {"dict": {"bar": "bar"}})
|
||||
dump_json(data_dir / DEFAULT_PARAMS_FILE, {"dict": {"foo": "foo"}})
|
||||
(tmp_dir / DEFAULT_PARAMS_FILE).dump({"dict": {"bar": "bar"}})
|
||||
(data_dir / DEFAULT_PARAMS_FILE).dump({"dict": {"foo": "foo"}})
|
||||
resolver = DataResolver(dvc, PathInfo(str(tmp_dir)), d)
|
||||
|
||||
assert_stage_equal(
|
||||
@@ -135,12 +134,12 @@ def test_with_templated_wdir(tmp_dir, dvc):
|
||||
}
|
||||
}
|
||||
}
|
||||
dump_yaml(
|
||||
tmp_dir / DEFAULT_PARAMS_FILE, {"dict": {"bar": "bar", "ws": "data"}}
|
||||
(tmp_dir / DEFAULT_PARAMS_FILE).dump(
|
||||
{"dict": {"bar": "bar", "ws": "data"}}
|
||||
)
|
||||
data_dir = tmp_dir / "data"
|
||||
data_dir.mkdir()
|
||||
dump_json(data_dir / DEFAULT_PARAMS_FILE, {"dict": {"foo": "foo"}})
|
||||
(data_dir / DEFAULT_PARAMS_FILE).dump({"dict": {"foo": "foo"}})
|
||||
resolver = DataResolver(dvc, PathInfo(str(tmp_dir)), d)
|
||||
|
||||
assert_stage_equal(
|
||||
@@ -167,7 +166,7 @@ def test_with_templated_wdir(tmp_dir, dvc):
|
||||
|
||||
def test_resolve_local_tries_to_load_globally_used_files(tmp_dir, dvc):
|
||||
iterable = {"bar": "bar", "foo": "foo"}
|
||||
dump_json(tmp_dir / "params.json", iterable)
|
||||
(tmp_dir / "params.json").dump(iterable)
|
||||
|
||||
d = {
|
||||
"vars": ["params.json"],
|
||||
@@ -196,7 +195,7 @@ def test_resolve_local_tries_to_load_globally_used_files(tmp_dir, dvc):
|
||||
|
||||
def test_resolve_local_tries_to_load_globally_used_params_yaml(tmp_dir, dvc):
|
||||
iterable = {"bar": "bar", "foo": "foo"}
|
||||
dump_yaml(tmp_dir / "params.yaml", iterable)
|
||||
(tmp_dir / "params.yaml").dump(iterable)
|
||||
|
||||
d = {
|
||||
"stages": {
|
||||
@@ -224,7 +223,7 @@ def test_resolve_local_tries_to_load_globally_used_params_yaml(tmp_dir, dvc):
|
||||
|
||||
def test_vars_relpath_overwrite(tmp_dir, dvc):
|
||||
iterable = {"bar": "bar", "foo": "foo"}
|
||||
dump_yaml(tmp_dir / "params.yaml", iterable)
|
||||
(tmp_dir / "params.yaml").dump(iterable)
|
||||
d = {
|
||||
"vars": ["params.yaml"],
|
||||
"stages": {
|
||||
@@ -252,7 +251,7 @@ def test_vars_relpath_overwrite(tmp_dir, dvc):
|
||||
)
|
||||
def test_vars_load_partial(tmp_dir, dvc, local, vars_):
|
||||
iterable = {"bar": "bar", "foo": "foo"}
|
||||
dump_yaml(tmp_dir / "test_params.yaml", iterable)
|
||||
(tmp_dir / "test_params.yaml").dump(iterable)
|
||||
d = {"stages": {"build": {"cmd": "echo ${bar}"}}}
|
||||
if local:
|
||||
d["stages"]["build"]["vars"] = vars_
|
||||
|
||||
@@ -5,7 +5,7 @@ import pytest
|
||||
|
||||
from dvc.parsing import DEFAULT_PARAMS_FILE, DataResolver, ResolveError
|
||||
from dvc.parsing.context import Context
|
||||
from dvc.utils.serialize import dump_json, dump_yaml, dumps_yaml
|
||||
from dvc.utils.serialize import dumps_yaml
|
||||
|
||||
from . import CONTEXT_DATA, RESOLVED_DVC_YAML_DATA, TEMPLATED_DVC_YAML_DATA
|
||||
|
||||
@@ -50,16 +50,16 @@ def test_vars_interpolation_errors(tmp_dir, dvc, vars_):
|
||||
"vars_", [{}, {"vars": []}, {"vars": [DEFAULT_PARAMS_FILE]}]
|
||||
)
|
||||
def test_default_params_file(tmp_dir, dvc, vars_):
|
||||
dump_yaml(DEFAULT_PARAMS_FILE, DATA)
|
||||
(tmp_dir / DEFAULT_PARAMS_FILE).dump(DATA)
|
||||
resolver = DataResolver(dvc, tmp_dir, vars_)
|
||||
assert resolver.context == DATA
|
||||
|
||||
|
||||
def test_load_vars_from_file(tmp_dir, dvc):
|
||||
dump_yaml(DEFAULT_PARAMS_FILE, DATA)
|
||||
(tmp_dir / DEFAULT_PARAMS_FILE).dump(DATA)
|
||||
|
||||
datasets = {"datasets": ["foo", "bar"]}
|
||||
dump_json("params.json", datasets)
|
||||
(tmp_dir / "params.json").dump(datasets)
|
||||
d = {"vars": [DEFAULT_PARAMS_FILE, "params.json"]}
|
||||
resolver = DataResolver(dvc, tmp_dir, d)
|
||||
|
||||
@@ -82,7 +82,7 @@ def test_load_vars_with_relpath(tmp_dir, scm, dvc):
|
||||
|
||||
|
||||
def test_partial_vars_doesnot_exist(tmp_dir, dvc):
|
||||
dump_yaml("test_params.yaml", {"sub1": "sub1"})
|
||||
(tmp_dir / "test_params.yaml").dump({"sub1": "sub1"})
|
||||
|
||||
with pytest.raises(ResolveError) as exc_info:
|
||||
DataResolver(dvc, tmp_dir, {"vars": ["test_params.yaml:sub2"]})
|
||||
@@ -94,8 +94,8 @@ def test_partial_vars_doesnot_exist(tmp_dir, dvc):
|
||||
|
||||
|
||||
def test_global_overwrite_error_on_imports(tmp_dir, dvc):
|
||||
dump_yaml(DEFAULT_PARAMS_FILE, DATA)
|
||||
dump_json("params.json", DATA)
|
||||
(tmp_dir / DEFAULT_PARAMS_FILE).dump(DATA)
|
||||
(tmp_dir / "params.json").dump(DATA)
|
||||
|
||||
d = {"vars": [DEFAULT_PARAMS_FILE, "params.json"]}
|
||||
with pytest.raises(ResolveError) as exc_info:
|
||||
@@ -109,7 +109,7 @@ def test_global_overwrite_error_on_imports(tmp_dir, dvc):
|
||||
|
||||
|
||||
def test_global_overwrite_vars(tmp_dir, dvc):
|
||||
dump_yaml(DEFAULT_PARAMS_FILE, DATA)
|
||||
(tmp_dir / DEFAULT_PARAMS_FILE).dump(DATA)
|
||||
d = {"vars": [DATA]}
|
||||
|
||||
with pytest.raises(ResolveError) as exc_info:
|
||||
@@ -123,7 +123,7 @@ def test_global_overwrite_vars(tmp_dir, dvc):
|
||||
|
||||
|
||||
def test_local_declared_vars_overwrite(tmp_dir, dvc):
|
||||
dump_yaml(DEFAULT_PARAMS_FILE, DATA)
|
||||
(tmp_dir / DEFAULT_PARAMS_FILE).dump(DATA)
|
||||
|
||||
d = {"vars": [DATA["models"], DATA["models"]]}
|
||||
with pytest.raises(ResolveError) as exc_info:
|
||||
@@ -158,7 +158,7 @@ def test_specified_params_file_not_exist(tmp_dir, dvc):
|
||||
)
|
||||
def test_vars_already_loaded_message(tmp_dir, dvc, local, vars_):
|
||||
d = {"stages": {"build": {"cmd": "echo ${sub1} ${sub2}"}}}
|
||||
dump_yaml("test_params.yaml", {"sub1": "sub1", "sub2": "sub2"})
|
||||
(tmp_dir / "test_params.yaml").dump({"sub1": "sub1", "sub2": "sub2"})
|
||||
if not local:
|
||||
d["vars"] = vars_
|
||||
else:
|
||||
@@ -175,8 +175,8 @@ def test_vars_already_loaded_message(tmp_dir, dvc, local, vars_):
|
||||
"vars_, loc", [(DATA, "build.vars[0]"), ("params.json", "params.json")]
|
||||
)
|
||||
def test_local_overwrite_error(tmp_dir, dvc, vars_, loc):
|
||||
dump_yaml(DEFAULT_PARAMS_FILE, DATA)
|
||||
dump_json("params.json", DATA)
|
||||
(tmp_dir / DEFAULT_PARAMS_FILE).dump(DATA)
|
||||
(tmp_dir / "params.json").dump(DATA)
|
||||
|
||||
d = {"stages": {"build": {"cmd": "echo ${models.foo}", "vars": [vars_]}}}
|
||||
|
||||
|
||||
@@ -1,8 +1,5 @@
|
||||
from tests.func.plots.utils import _write_json
|
||||
|
||||
|
||||
def test_diff_dirty(tmp_dir, scm, dvc, run_copy_metrics):
|
||||
_write_json(tmp_dir, [{"y": 2}, {"y": 3}], "metric_t.json")
|
||||
(tmp_dir / "metric_t.json").dump([{"y": 2}, {"y": 3}], sort_keys=True)
|
||||
run_copy_metrics(
|
||||
"metric_t.json",
|
||||
"metric.json",
|
||||
@@ -11,7 +8,7 @@ def test_diff_dirty(tmp_dir, scm, dvc, run_copy_metrics):
|
||||
)
|
||||
|
||||
metric_head = [{"y": 3}, {"y": 5}]
|
||||
_write_json(tmp_dir, metric_head, "metric_t.json")
|
||||
(tmp_dir / "metric_t.json").dump_json(metric_head, sort_keys=True)
|
||||
run_copy_metrics(
|
||||
"metric_t.json",
|
||||
"metric.json",
|
||||
@@ -20,7 +17,7 @@ def test_diff_dirty(tmp_dir, scm, dvc, run_copy_metrics):
|
||||
)
|
||||
|
||||
metric_1 = [{"y": 5}, {"y": 6}]
|
||||
_write_json(tmp_dir, metric_1, "metric_t.json")
|
||||
(tmp_dir / "metric_t.json").dump_json(metric_1, sort_keys=True)
|
||||
run_copy_metrics(
|
||||
"metric_t.json", "metric.json", plots_no_cache=["metric.json"]
|
||||
)
|
||||
@@ -35,7 +32,7 @@ def test_diff_dirty(tmp_dir, scm, dvc, run_copy_metrics):
|
||||
},
|
||||
}
|
||||
metric_2 = [{"y": 7}, {"y": 8}]
|
||||
_write_json(tmp_dir, metric_2, "metric.json")
|
||||
(tmp_dir / "metric.json").dump_json(metric_2, sort_keys=True)
|
||||
|
||||
diff_result = dvc.plots.diff(props=props)
|
||||
assert diff_result == {
|
||||
|
||||
@@ -6,14 +6,13 @@ from dvc.dvcfile import PIPELINE_LOCK
|
||||
from dvc.repo.plots import PropsNotFoundError
|
||||
from dvc.repo.plots.template import TemplateNotFoundError
|
||||
from dvc.utils import relpath
|
||||
from tests.func.plots.utils import _write_json
|
||||
|
||||
|
||||
def test_plots_modify_existing_template(
|
||||
tmp_dir, dvc, run_copy_metrics, custom_template
|
||||
):
|
||||
metric = [{"a": 1, "b": 2}, {"a": 2, "b": 3}]
|
||||
_write_json(tmp_dir, metric, "metric_t.json")
|
||||
(tmp_dir / "metric_t.json").dump_json(metric, sort_keys=True)
|
||||
stage = run_copy_metrics(
|
||||
"metric_t.json",
|
||||
"metric.json",
|
||||
@@ -31,7 +30,7 @@ def test_plots_modify_existing_template(
|
||||
def test_plots_modify_should_not_change_lockfile(
|
||||
tmp_dir, dvc, run_copy_metrics, custom_template
|
||||
):
|
||||
_write_json(tmp_dir, [{"a": 1, "b": 2}], "metric_t.json")
|
||||
(tmp_dir / "metric_t.json").dump_json([{"a": 1, "b": 2}], sort_keys=True)
|
||||
run_copy_metrics(
|
||||
"metric_t.json",
|
||||
"metric.json",
|
||||
@@ -56,7 +55,7 @@ def test_plots_modify_not_existing_template(dvc):
|
||||
|
||||
def test_unset_nonexistent(tmp_dir, dvc, run_copy_metrics, custom_template):
|
||||
metric = [{"a": 1, "b": 2}, {"a": 2, "b": 3}]
|
||||
_write_json(tmp_dir, metric, "metric_t.json")
|
||||
(tmp_dir / "metric_t.json").dump_json(metric, sort_keys=True)
|
||||
run_copy_metrics(
|
||||
"metric_t.json",
|
||||
"metric.json",
|
||||
@@ -76,7 +75,7 @@ def test_dir_plots(tmp_dir, dvc, run_copy_metrics):
|
||||
metric = [{"first_val": 100, "val": 2}, {"first_val": 200, "val": 3}]
|
||||
|
||||
fname = "file.json"
|
||||
_write_json(tmp_dir, metric, fname)
|
||||
(tmp_dir / fname).dump_json(metric, sort_keys=True)
|
||||
|
||||
p1 = os.path.join("subdir", "p1.json")
|
||||
p2 = os.path.join("subdir", "p2.json")
|
||||
|
||||
@@ -6,23 +6,16 @@ from funcy import get_in
|
||||
from dvc.dvcfile import PIPELINE_FILE
|
||||
from dvc.exceptions import OverlappingOutputPathsError
|
||||
from dvc.main import main
|
||||
from dvc.path_info import PathInfo
|
||||
from dvc.render.vega import PlotMetricTypeError
|
||||
from dvc.repo import Repo
|
||||
from dvc.utils import onerror_collect
|
||||
from dvc.utils.fs import remove
|
||||
from dvc.utils.serialize import (
|
||||
EncodingError,
|
||||
YAMLFileCorruptedError,
|
||||
dump_yaml,
|
||||
modify_yaml,
|
||||
)
|
||||
from tests.func.plots.utils import _write_json
|
||||
from dvc.utils.serialize import EncodingError, YAMLFileCorruptedError
|
||||
|
||||
|
||||
def test_plot_cache_missing(tmp_dir, scm, dvc, caplog, run_copy_metrics):
|
||||
metric1 = [{"y": 2}, {"y": 3}]
|
||||
_write_json(tmp_dir, metric1, "metric_t.json")
|
||||
(tmp_dir / "metric_t.json").dump_json(metric1, sort_keys=True)
|
||||
run_copy_metrics(
|
||||
"metric_t.json",
|
||||
"metric.json",
|
||||
@@ -33,7 +26,7 @@ def test_plot_cache_missing(tmp_dir, scm, dvc, caplog, run_copy_metrics):
|
||||
|
||||
# Make a different plot and then remove its datafile
|
||||
metric2 = [{"y": 3}, {"y": 4}]
|
||||
_write_json(tmp_dir, metric2, "metric_t.json")
|
||||
(tmp_dir / "metric_t.json").dump_json(metric2, sort_keys=True)
|
||||
stage = run_copy_metrics(
|
||||
"metric_t.json",
|
||||
"metric.json",
|
||||
@@ -71,7 +64,7 @@ def test_plot_wrong_metric_type(tmp_dir, scm, dvc, run_copy_metrics):
|
||||
@pytest.mark.parametrize("use_dvc", [True, False])
|
||||
def test_show_non_plot(tmp_dir, scm, use_dvc):
|
||||
metric = [{"first_val": 100, "val": 2}, {"first_val": 200, "val": 3}]
|
||||
_write_json(tmp_dir, metric, "metric.json")
|
||||
(tmp_dir / "metric.json").dump_json(metric, sort_keys=True)
|
||||
|
||||
if use_dvc:
|
||||
dvc = Repo.init()
|
||||
@@ -87,7 +80,7 @@ def test_show_non_plot_and_plot_with_params(
|
||||
tmp_dir, scm, dvc, run_copy_metrics
|
||||
):
|
||||
metric = [{"first_val": 100, "val": 2}, {"first_val": 200, "val": 3}]
|
||||
_write_json(tmp_dir, metric, "metric.json")
|
||||
(tmp_dir / "metric.json").dump_json(metric, sort_keys=True)
|
||||
run_copy_metrics(
|
||||
"metric.json", "metric2.json", plots_no_cache=["metric2.json"]
|
||||
)
|
||||
@@ -105,7 +98,7 @@ def test_show_from_subdir(tmp_dir, dvc, capsys):
|
||||
|
||||
subdir.mkdir()
|
||||
metric = [{"first_val": 100, "val": 2}, {"first_val": 200, "val": 3}]
|
||||
_write_json(subdir, metric, "metric.json")
|
||||
(subdir / "metric.json").dump_json(metric, sort_keys=True)
|
||||
|
||||
with subdir.chdir():
|
||||
assert main(["plots", "show", "metric.json"]) == 0
|
||||
@@ -127,10 +120,10 @@ def test_plots_show_non_existing(tmp_dir, dvc, caplog):
|
||||
|
||||
@pytest.mark.parametrize("clear_before_run", [True, False])
|
||||
def test_plots_show_overlap(tmp_dir, dvc, run_copy_metrics, clear_before_run):
|
||||
data_dir = PathInfo("data")
|
||||
(tmp_dir / data_dir).mkdir()
|
||||
data_dir = tmp_dir / "data"
|
||||
data_dir.mkdir()
|
||||
|
||||
dump_yaml(data_dir / "m1_temp.yaml", {"a": {"b": {"c": 2, "d": 1}}})
|
||||
(data_dir / "m1_temp.yaml").dump({"a": {"b": {"c": 2, "d": 1}}})
|
||||
run_copy_metrics(
|
||||
str(data_dir / "m1_temp.yaml"),
|
||||
str(data_dir / "m1.yaml"),
|
||||
@@ -139,7 +132,7 @@ def test_plots_show_overlap(tmp_dir, dvc, run_copy_metrics, clear_before_run):
|
||||
name="cp-m1",
|
||||
plots=[str(data_dir / "m1.yaml")],
|
||||
)
|
||||
with modify_yaml("dvc.yaml") as d:
|
||||
with (tmp_dir / "dvc.yaml").modify() as d:
|
||||
# trying to make an output overlaps error
|
||||
d["stages"]["corrupted-stage"] = {
|
||||
"cmd": "mkdir data",
|
||||
@@ -167,7 +160,7 @@ def test_dir_plots(tmp_dir, dvc, run_copy_metrics):
|
||||
metric = [{"first_val": 100, "val": 2}, {"first_val": 200, "val": 3}]
|
||||
|
||||
fname = "file.json"
|
||||
_write_json(tmp_dir, metric, fname)
|
||||
(tmp_dir / fname).dump_json(metric, sort_keys=True)
|
||||
|
||||
p1 = os.path.join("subdir", "p1.json")
|
||||
p2 = os.path.join("subdir", "p2.json")
|
||||
@@ -213,7 +206,7 @@ def test_log_errors(
|
||||
tmp_dir, scm, dvc, run_copy_metrics, file, error_path, capsys
|
||||
):
|
||||
metric = [{"val": 2}, {"val": 3}]
|
||||
dump_yaml("metric_t.yaml", metric)
|
||||
(tmp_dir / "metric_t.yaml").dump(metric)
|
||||
run_copy_metrics(
|
||||
"metric_t.yaml",
|
||||
"plot.yaml",
|
||||
|
||||
@@ -1,12 +0,0 @@
|
||||
import json
|
||||
|
||||
from tests.utils import dump_sv
|
||||
|
||||
|
||||
def _write_csv(metric, filename, header=True):
|
||||
with open(filename, "w", newline="") as csvobj:
|
||||
dump_sv(csvobj, metric, delimiter=",", header=header)
|
||||
|
||||
|
||||
def _write_json(tmp_dir, metric, filename):
|
||||
tmp_dir.gen(filename, json.dumps(metric, sort_keys=True))
|
||||
@@ -55,7 +55,7 @@ def test_add(tmp_dir, dvc):
|
||||
assert stage.outs[0].hash_info == HashInfo("md5", md5)
|
||||
assert stage.md5 is None
|
||||
|
||||
assert load_yaml("foo.dvc") == {
|
||||
assert (tmp_dir / "foo.dvc").parse() == {
|
||||
"outs": [
|
||||
{
|
||||
"md5": "acbd18db4cc2f85cedef654fccc4a4d8",
|
||||
@@ -73,7 +73,7 @@ def test_add_executable(tmp_dir, dvc):
|
||||
os.chmod("foo", st.st_mode | stat.S_IEXEC)
|
||||
dvc.add("foo")
|
||||
|
||||
assert load_yaml("foo.dvc") == {
|
||||
assert (tmp_dir / "foo.dvc").parse() == {
|
||||
"outs": [
|
||||
{
|
||||
"md5": "acbd18db4cc2f85cedef654fccc4a4d8",
|
||||
|
||||
@@ -1,5 +1,4 @@
|
||||
import os
|
||||
from unittest import mock
|
||||
from unittest.mock import call
|
||||
|
||||
import pytest
|
||||
@@ -9,17 +8,17 @@ from dvc.main import main
|
||||
from dvc.repo import Repo
|
||||
|
||||
|
||||
@mock.patch("dvc.analytics.send")
|
||||
def test_daemon_analytics(mock_send, tmp_path):
|
||||
def test_daemon_analytics(mocker, tmp_path):
|
||||
mock_send = mocker.patch("dvc.analytics.send")
|
||||
report = os.fspath(tmp_path)
|
||||
assert 0 == main(["daemon", "analytics", report])
|
||||
|
||||
mock_send.assert_called_with(report)
|
||||
|
||||
|
||||
@mock.patch("dvc.analytics.collect_and_send_report")
|
||||
@mock.patch("dvc.analytics.is_enabled", return_value=True)
|
||||
def test_main_analytics(mock_is_enabled, mock_report, tmp_dir, dvc):
|
||||
def test_main_analytics(mocker, tmp_dir, dvc):
|
||||
mock_is_enabled = mocker.patch("dvc.analytics.collect_and_send_report")
|
||||
mock_report = mocker.patch("dvc.analytics.is_enabled", return_value=True)
|
||||
tmp_dir.gen("foo", "text")
|
||||
assert 0 == main(["add", "foo"])
|
||||
assert mock_is_enabled.called
|
||||
@@ -46,8 +45,8 @@ class ANY:
|
||||
return isinstance(other, self.expected_type)
|
||||
|
||||
|
||||
@mock.patch("requests.post")
|
||||
def test_collect_and_send_report(mock_post, dvc, mock_daemon):
|
||||
def test_collect_and_send_report(mocker, dvc, mock_daemon):
|
||||
mock_post = mocker.patch("requests.post")
|
||||
collect_and_send_report()
|
||||
|
||||
assert mock_daemon.call_count == 1
|
||||
|
||||
@@ -867,9 +867,9 @@ def test_checkout_external_modified_file(tmp_dir, dvc, scm, mocker, workspace):
|
||||
def test_checkout_executable(tmp_dir, dvc):
|
||||
tmp_dir.dvc_gen("foo", "foo")
|
||||
|
||||
contents = load_yaml("foo.dvc")
|
||||
contents = (tmp_dir / "foo.dvc").parse()
|
||||
contents["outs"][0]["isexec"] = True
|
||||
dump_yaml("foo.dvc", contents)
|
||||
(tmp_dir / "foo.dvc").dump(contents)
|
||||
|
||||
dvc.checkout("foo")
|
||||
|
||||
|
||||
@@ -6,7 +6,6 @@ from dvc.dependency.base import DependencyDoesNotExistError
|
||||
from dvc.dvcfile import PIPELINE_FILE
|
||||
from dvc.output import OutputDoesNotExistError
|
||||
from dvc.stage.exceptions import StageCommitError
|
||||
from dvc.utils.serialize import dump_yaml, load_yaml
|
||||
from tests.utils import clean_staging
|
||||
|
||||
|
||||
@@ -65,9 +64,9 @@ def test_commit_changed_md5(tmp_dir, dvc):
|
||||
tmp_dir.gen({"file": "file content"})
|
||||
(stage,) = dvc.add("file", no_commit=True)
|
||||
|
||||
stage_file_content = load_yaml(stage.path)
|
||||
stage_file_content = (tmp_dir / stage.path).parse()
|
||||
stage_file_content["md5"] = "1111111111"
|
||||
dump_yaml(stage.path, stage_file_content)
|
||||
(tmp_dir / stage.path).dump(stage_file_content)
|
||||
|
||||
clean_staging()
|
||||
|
||||
@@ -75,7 +74,7 @@ def test_commit_changed_md5(tmp_dir, dvc):
|
||||
dvc.commit(stage.path)
|
||||
|
||||
dvc.commit(stage.path, force=True)
|
||||
assert "md5" not in load_yaml(stage.path)
|
||||
assert "md5" not in (tmp_dir / stage.path).parse()
|
||||
|
||||
|
||||
def test_commit_no_exec(tmp_dir, dvc):
|
||||
|
||||
@@ -77,6 +77,12 @@ def test_config_set_local(tmp_dir, dvc):
|
||||
assert (tmp_dir / ".dvc" / "config.local").read_text() == "\n"
|
||||
|
||||
|
||||
def test_config_set_in_non_dvc_repo(tmp_dir, caplog):
|
||||
assert main(["config", "core.analytics", "true"]) != 0
|
||||
out = caplog.text
|
||||
assert "Not inside a DVC repo" in out
|
||||
|
||||
|
||||
@pytest.mark.parametrize(
|
||||
"args, ret, msg",
|
||||
[
|
||||
@@ -128,6 +134,21 @@ def test_config_get(tmp_dir, dvc, capsys, caplog, args, ret, msg):
|
||||
assert msg in text
|
||||
|
||||
|
||||
@pytest.mark.parametrize(
|
||||
"args, ret",
|
||||
[
|
||||
(["--local", "core.remote"], 251),
|
||||
(["--project", "core.remote"], 251),
|
||||
(["core.remote"], 0),
|
||||
],
|
||||
)
|
||||
def test_config_get_in_non_dvc_repo(tmp_dir, caplog, args, ret):
|
||||
assert main(["config"] + args) == ret
|
||||
if ret != 0:
|
||||
out = caplog.text
|
||||
assert "Not inside a DVC repo" in out
|
||||
|
||||
|
||||
def test_config_list(tmp_dir, dvc, capsys):
|
||||
(tmp_dir / ".dvc" / "config").write_text(
|
||||
textwrap.dedent(
|
||||
@@ -169,6 +190,21 @@ def test_config_list(tmp_dir, dvc, capsys):
|
||||
assert "core.remote=myremote" in out
|
||||
|
||||
|
||||
@pytest.mark.parametrize(
|
||||
"args, ret",
|
||||
[
|
||||
(["--list", "--local"], 251),
|
||||
(["--list", "--project"], 251),
|
||||
(["--list"], 0),
|
||||
],
|
||||
)
|
||||
def test_config_list_in_non_dvc_repo(tmp_dir, caplog, args, ret):
|
||||
assert main(["config"] + args) == ret
|
||||
if ret != 0:
|
||||
out = caplog.text
|
||||
assert "Not inside a DVC repo" in out
|
||||
|
||||
|
||||
@pytest.mark.parametrize(
|
||||
"args", [["core.analytics"], ["core.analytics", "false"], ["--unset"]]
|
||||
)
|
||||
|
||||
@@ -10,7 +10,6 @@ from dvc.external_repo import clean_repos
|
||||
from dvc.main import main
|
||||
from dvc.stage.exceptions import StageNotFound
|
||||
from dvc.utils.fs import move, remove
|
||||
from dvc.utils.serialize import dump_yaml, load_yaml
|
||||
|
||||
all_clouds = [
|
||||
pytest.lazy_fixture(cloud)
|
||||
@@ -204,9 +203,9 @@ def test_warn_on_outdated_stage(tmp_dir, dvc, local_remote, caplog):
|
||||
assert main(["push"]) == 0
|
||||
|
||||
stage_file_path = stage.relpath
|
||||
content = load_yaml(stage_file_path)
|
||||
content = (tmp_dir / stage_file_path).parse()
|
||||
del content["outs"][0]["md5"]
|
||||
dump_yaml(stage_file_path, content)
|
||||
(tmp_dir / stage_file_path).dump(content)
|
||||
|
||||
with caplog.at_level(logging.WARNING, logger="dvc"):
|
||||
caplog.clear()
|
||||
@@ -612,8 +611,6 @@ def test_pull_no_00_prefix(tmp_dir, dvc, remote, monkeypatch):
|
||||
|
||||
|
||||
def test_output_remote(tmp_dir, dvc, make_remote):
|
||||
from dvc.utils.serialize import modify_yaml
|
||||
|
||||
make_remote("default", default=True)
|
||||
make_remote("for_foo", default=False)
|
||||
make_remote("for_data", default=False)
|
||||
@@ -622,10 +619,10 @@ def test_output_remote(tmp_dir, dvc, make_remote):
|
||||
tmp_dir.dvc_gen("bar", "bar")
|
||||
tmp_dir.dvc_gen("data", {"one": "one", "two": "two"})
|
||||
|
||||
with modify_yaml("foo.dvc") as d:
|
||||
with (tmp_dir / "foo.dvc").modify() as d:
|
||||
d["outs"][0]["remote"] = "for_foo"
|
||||
|
||||
with modify_yaml("data.dvc") as d:
|
||||
with (tmp_dir / "data.dvc").modify() as d:
|
||||
d["outs"][0]["remote"] = "for_data"
|
||||
|
||||
dvc.push()
|
||||
@@ -653,3 +650,35 @@ def test_output_remote(tmp_dir, dvc, make_remote):
|
||||
"6b18131dc289fd37006705affe961ef8.dir",
|
||||
"b8a9f715dbb64fd5c56e7783c6820a61",
|
||||
}
|
||||
|
||||
|
||||
def test_target_remote(tmp_dir, dvc, make_remote):
|
||||
make_remote("default", default=True)
|
||||
make_remote("myremote", default=False)
|
||||
|
||||
tmp_dir.dvc_gen("foo", "foo")
|
||||
tmp_dir.dvc_gen("data", {"one": "one", "two": "two"})
|
||||
|
||||
dvc.push(remote="myremote")
|
||||
|
||||
default = dvc.cloud.get_remote_odb("default")
|
||||
myremote = dvc.cloud.get_remote_odb("myremote")
|
||||
|
||||
assert set(default.all()) == set()
|
||||
assert set(myremote.all()) == {
|
||||
"acbd18db4cc2f85cedef654fccc4a4d8",
|
||||
"f97c5d29941bfb1b2fdab0874906ab82",
|
||||
"6b18131dc289fd37006705affe961ef8.dir",
|
||||
"b8a9f715dbb64fd5c56e7783c6820a61",
|
||||
}
|
||||
|
||||
clean(["foo", "data"], dvc)
|
||||
|
||||
dvc.pull(remote="myremote")
|
||||
|
||||
assert set(dvc.odb.local.all()) == {
|
||||
"acbd18db4cc2f85cedef654fccc4a4d8",
|
||||
"f97c5d29941bfb1b2fdab0874906ab82",
|
||||
"6b18131dc289fd37006705affe961ef8.dir",
|
||||
"b8a9f715dbb64fd5c56e7783c6820a61",
|
||||
}
|
||||
|
||||
@@ -15,7 +15,6 @@ from dvc.stage.exceptions import (
|
||||
StageFileFormatError,
|
||||
)
|
||||
from dvc.stage.loader import StageNotFound
|
||||
from dvc.utils.serialize import dump_yaml
|
||||
|
||||
|
||||
def test_run_load_one_for_multistage(tmp_dir, dvc):
|
||||
@@ -245,14 +244,14 @@ def test_remove_stage_on_lockfile_format_error(tmp_dir, dvc, run_copy):
|
||||
lock_data = lock_file.load()
|
||||
lock_data["gibberish"] = True
|
||||
data["gibberish"] = True
|
||||
dump_yaml(lock_file.relpath, lock_data)
|
||||
(tmp_dir / lock_file.relpath).dump(lock_data)
|
||||
with pytest.raises(StageFileFormatError):
|
||||
dvc_file.remove_stage(stage)
|
||||
|
||||
lock_file.remove()
|
||||
dvc_file.dump(stage, update_pipeline=False)
|
||||
|
||||
dump_yaml(dvc_file.relpath, data)
|
||||
(tmp_dir / dvc_file.relpath).dump(data)
|
||||
with pytest.raises(StageFileFormatError):
|
||||
dvc_file.remove_stage(stage)
|
||||
|
||||
@@ -335,7 +334,7 @@ def test_dvcfile_dump_preserves_desc(tmp_dir, dvc, run_copy):
|
||||
|
||||
data = dvcfile._load()[0]
|
||||
data["stages"]["run_copy"]["outs"][0] = {"bar": {"desc": out_desc}}
|
||||
dump_yaml(dvcfile.path, data)
|
||||
(tmp_dir / dvcfile.path).dump(data)
|
||||
|
||||
assert stage.desc == stage_desc
|
||||
stage.outs[0].desc = out_desc
|
||||
@@ -376,7 +375,7 @@ def test_dvcfile_dump_preserves_comments(tmp_dir, dvc):
|
||||
],
|
||||
)
|
||||
def test_dvcfile_try_dumping_parametrized_stage(tmp_dir, dvc, data, name):
|
||||
dump_yaml("dvc.yaml", {"stages": data, "vars": [{"foo": "foobar"}]})
|
||||
(tmp_dir / "dvc.yaml").dump({"stages": data, "vars": [{"foo": "foobar"}]})
|
||||
|
||||
stage = dvc.stage.load_one(name=name)
|
||||
dvcfile = stage.dvcfile
|
||||
|
||||
@@ -13,7 +13,7 @@ from tests.unit.fs.test_repo import make_subrepo
|
||||
from tests.utils import clean_staging
|
||||
|
||||
|
||||
def test_external_repo(erepo_dir):
|
||||
def test_external_repo(erepo_dir, mocker):
|
||||
with erepo_dir.chdir():
|
||||
with erepo_dir.branch("branch", new=True):
|
||||
erepo_dir.dvc_gen("file", "branch", commit="create file on branch")
|
||||
@@ -21,16 +21,17 @@ def test_external_repo(erepo_dir):
|
||||
|
||||
url = os.fspath(erepo_dir)
|
||||
|
||||
with patch.object(Git, "clone", wraps=Git.clone) as mock:
|
||||
with external_repo(url) as repo:
|
||||
with repo.open_by_relpath("file") as fd:
|
||||
assert fd.read() == "master"
|
||||
mock = mocker.patch.object(Git, "clone", wraps=Git.clone)
|
||||
|
||||
with external_repo(url, rev="branch") as repo:
|
||||
with repo.open_by_relpath("file") as fd:
|
||||
assert fd.read() == "branch"
|
||||
with external_repo(url) as repo:
|
||||
with repo.open_by_relpath("file") as fd:
|
||||
assert fd.read() == "master"
|
||||
|
||||
assert mock.call_count == 1
|
||||
with external_repo(url, rev="branch") as repo:
|
||||
with repo.open_by_relpath("file") as fd:
|
||||
assert fd.read() == "branch"
|
||||
|
||||
assert mock.call_count == 1
|
||||
|
||||
|
||||
def test_source_change(erepo_dir):
|
||||
|
||||
+153
-2
@@ -3,6 +3,7 @@ import os
|
||||
from operator import itemgetter
|
||||
from os.path import join
|
||||
|
||||
import fsspec
|
||||
import pytest
|
||||
|
||||
from dvc.fs import get_cloud_fs
|
||||
@@ -260,7 +261,6 @@ def test_fs_getsize(dvc, cloud):
|
||||
pytest.lazy_fixture("gs"),
|
||||
pytest.lazy_fixture("gdrive"),
|
||||
pytest.lazy_fixture("hdfs"),
|
||||
pytest.lazy_fixture("http"),
|
||||
pytest.lazy_fixture("local_cloud"),
|
||||
pytest.lazy_fixture("oss"),
|
||||
pytest.lazy_fixture("s3"),
|
||||
@@ -406,7 +406,7 @@ def test_fs_makedirs_on_upload_and_copy(dvc, cloud):
|
||||
fs = cls(**config)
|
||||
|
||||
with io.BytesIO(b"foo") as stream:
|
||||
fs.upload_fobj(stream, cloud / "dir" / "foo")
|
||||
fs.upload(stream, cloud / "dir" / "foo")
|
||||
|
||||
assert fs.isdir(cloud / "dir")
|
||||
assert fs.exists(cloud / "dir" / "foo")
|
||||
@@ -414,3 +414,154 @@ def test_fs_makedirs_on_upload_and_copy(dvc, cloud):
|
||||
fs.copy(cloud / "dir" / "foo", cloud / "dir2" / "foo")
|
||||
assert fs.isdir(cloud / "dir2")
|
||||
assert fs.exists(cloud / "dir2" / "foo")
|
||||
|
||||
|
||||
@pytest.mark.needs_internet
|
||||
@pytest.mark.parametrize(
|
||||
"cloud",
|
||||
[
|
||||
pytest.lazy_fixture("azure"),
|
||||
pytest.lazy_fixture("gs"),
|
||||
pytest.lazy_fixture("gdrive"),
|
||||
pytest.lazy_fixture("hdfs"),
|
||||
pytest.lazy_fixture("local_cloud"),
|
||||
pytest.lazy_fixture("oss"),
|
||||
pytest.lazy_fixture("s3"),
|
||||
pytest.lazy_fixture("ssh"),
|
||||
pytest.lazy_fixture("webhdfs"),
|
||||
pytest.lazy_fixture("webdav"),
|
||||
pytest.lazy_fixture("http"),
|
||||
],
|
||||
)
|
||||
def test_upload_callback(tmp_dir, dvc, cloud):
|
||||
tmp_dir.gen("foo", "foo")
|
||||
cls, config, _ = get_cloud_fs(dvc, **cloud.config)
|
||||
fs = cls(**config)
|
||||
expected_size = os.path.getsize(tmp_dir / "foo")
|
||||
|
||||
callback = fsspec.Callback()
|
||||
fs.upload(tmp_dir / "foo", cloud / "foo", callback=callback)
|
||||
|
||||
assert callback.size == expected_size
|
||||
assert callback.value == expected_size
|
||||
|
||||
|
||||
@pytest.mark.needs_internet
|
||||
@pytest.mark.parametrize(
|
||||
"cloud",
|
||||
[
|
||||
pytest.lazy_fixture("azure"),
|
||||
pytest.lazy_fixture("gs"),
|
||||
pytest.lazy_fixture("gdrive"),
|
||||
pytest.lazy_fixture("hdfs"),
|
||||
pytest.lazy_fixture("local_cloud"),
|
||||
pytest.lazy_fixture("oss"),
|
||||
pytest.lazy_fixture("s3"),
|
||||
pytest.lazy_fixture("ssh"),
|
||||
pytest.lazy_fixture("webhdfs"),
|
||||
pytest.lazy_fixture("webdav"),
|
||||
pytest.lazy_fixture("http"),
|
||||
],
|
||||
)
|
||||
def test_download_callback(tmp_dir, dvc, cloud, local_cloud):
|
||||
cls, config, _ = get_cloud_fs(dvc, **cloud.config)
|
||||
fs = cls(**config)
|
||||
|
||||
(tmp_dir / "to_upload").write_text("foo")
|
||||
fs.upload(tmp_dir / "to_upload", cloud / "foo")
|
||||
expected_size = fs.getsize(cloud / "foo")
|
||||
|
||||
callback = fsspec.Callback()
|
||||
fs.download_file(cloud / "foo", tmp_dir / "foo", callback=callback)
|
||||
|
||||
assert callback.size == expected_size
|
||||
assert callback.value == expected_size
|
||||
assert (tmp_dir / "foo").read_text() == "foo"
|
||||
|
||||
|
||||
@pytest.mark.needs_internet
|
||||
@pytest.mark.parametrize(
|
||||
"cloud",
|
||||
[
|
||||
pytest.lazy_fixture("azure"),
|
||||
pytest.lazy_fixture("gs"),
|
||||
pytest.lazy_fixture("hdfs"),
|
||||
pytest.lazy_fixture("local_cloud"),
|
||||
pytest.lazy_fixture("s3"),
|
||||
pytest.param(
|
||||
pytest.lazy_fixture("ssh"),
|
||||
marks=pytest.mark.skipif(
|
||||
os.name == "nt", reason="unsupported on Windows."
|
||||
),
|
||||
),
|
||||
pytest.lazy_fixture("gdrive"),
|
||||
pytest.lazy_fixture("webdav"),
|
||||
],
|
||||
)
|
||||
def test_download_dir_callback(tmp_dir, dvc, cloud):
|
||||
cls, config, _ = get_cloud_fs(dvc, **cloud.config)
|
||||
fs = cls(**config)
|
||||
cloud.gen({"dir": {"foo": "foo", "bar": "bar"}})
|
||||
|
||||
callback = fsspec.Callback()
|
||||
fs.download(cloud / "dir", tmp_dir / "dir", callback=callback)
|
||||
|
||||
assert callback.size == 2
|
||||
assert callback.value == 2
|
||||
assert (tmp_dir / "dir").read_text() == {"foo": "foo", "bar": "bar"}
|
||||
|
||||
|
||||
@pytest.mark.parametrize("fs_type", ["git", "dvc"])
|
||||
def test_download_callbacks_on_dvc_git_fs(tmp_dir, dvc, scm, fs_type):
|
||||
gen = tmp_dir.scm_gen if fs_type == "git" else tmp_dir.dvc_gen
|
||||
gen({"dir": {"foo": "foo", "bar": "bar"}, "file": "file"}, commit="gen")
|
||||
|
||||
fs = dvc.dvcfs if fs_type == "dvc" else scm.get_fs("HEAD")
|
||||
|
||||
callback = fsspec.Callback()
|
||||
fs.download(tmp_dir / "file", tmp_dir / "file2", callback=callback)
|
||||
|
||||
size = os.path.getsize(tmp_dir / "file")
|
||||
assert (tmp_dir / "file2").read_text() == "file"
|
||||
assert callback.size == size
|
||||
assert callback.value == size
|
||||
|
||||
if fs_type == "git":
|
||||
pytest.skip("gitfs does not support download_dir")
|
||||
|
||||
callback = fsspec.Callback()
|
||||
fs.download(tmp_dir / "dir", tmp_dir / "dir2", callback=callback)
|
||||
|
||||
assert (tmp_dir / "dir2").read_text() == {"foo": "foo", "bar": "bar"}
|
||||
assert callback.size == 2
|
||||
assert callback.value == 2
|
||||
|
||||
|
||||
def test_callback_on_repo_fs(tmp_dir, dvc, scm):
|
||||
tmp_dir.dvc_gen({"dir": {"bar": "bar"}}, commit="dvc")
|
||||
tmp_dir.scm_gen({"dir": {"foo": "foo"}}, commit="git")
|
||||
|
||||
fs = dvc.repo_fs
|
||||
|
||||
callback = fsspec.Callback()
|
||||
fs.download(tmp_dir / "dir", tmp_dir / "dir2", callback=callback)
|
||||
|
||||
assert (tmp_dir / "dir2").read_text() == {"foo": "foo", "bar": "bar"}
|
||||
assert callback.size == 2
|
||||
assert callback.value == 2
|
||||
|
||||
callback = fsspec.Callback()
|
||||
fs.download(tmp_dir / "dir" / "foo", tmp_dir / "foo", callback=callback)
|
||||
|
||||
size = os.path.getsize(tmp_dir / "dir" / "foo")
|
||||
assert (tmp_dir / "foo").read_text() == "foo"
|
||||
assert callback.size == size
|
||||
assert callback.value == size
|
||||
|
||||
callback = fsspec.Callback()
|
||||
fs.download(tmp_dir / "dir" / "bar", tmp_dir / "bar", callback=callback)
|
||||
|
||||
size = os.path.getsize(tmp_dir / "dir" / "bar")
|
||||
assert (tmp_dir / "bar").read_text() == "bar"
|
||||
assert callback.size == size
|
||||
assert callback.value == size
|
||||
|
||||
@@ -9,12 +9,7 @@ from dvc.dvcfile import PIPELINE_LOCK, Lockfile, LockfileCorruptedError
|
||||
from dvc.hash_info import HashInfo
|
||||
from dvc.stage.utils import split_params_deps
|
||||
from dvc.utils.fs import remove
|
||||
from dvc.utils.serialize import (
|
||||
dump_yaml,
|
||||
dumps_yaml,
|
||||
load_yaml,
|
||||
parse_yaml_for_update,
|
||||
)
|
||||
from dvc.utils.serialize import dumps_yaml, parse_yaml_for_update
|
||||
from tests.func.test_run_multistage import supported_params
|
||||
|
||||
FS_STRUCTURE = {
|
||||
@@ -183,7 +178,7 @@ def v1_repo_lock(tmp_dir, dvc):
|
||||
}
|
||||
dvc.run(cmd="echo foo", name="foo", no_exec=True)
|
||||
dvc.run(cmd="echo bar>bar.txt", outs=["bar.txt"], name="bar", no_exec=True)
|
||||
dump_yaml(tmp_dir / "dvc.lock", v1_lockdata)
|
||||
(tmp_dir / "dvc.lock").dump(v1_lockdata)
|
||||
yield v1_lockdata
|
||||
|
||||
|
||||
@@ -202,7 +197,7 @@ def test_migrates_v1_lockfile_to_v2_during_dump(
|
||||
assert dvc.reproduce()
|
||||
|
||||
assert "Migrating lock file 'dvc.lock' from v1 to v2" in caplog.messages
|
||||
d = load_yaml(tmp_dir / "dvc.lock")
|
||||
d = (tmp_dir / "dvc.lock").parse()
|
||||
assert d == {"stages": v1_repo_lock, "schema": "2.0"}
|
||||
|
||||
|
||||
@@ -211,7 +206,7 @@ def test_migrates_v1_lockfile_to_v2_during_dump(
|
||||
)
|
||||
def test_lockfile_invalid_versions(tmp_dir, dvc, version_info):
|
||||
lockdata = {**version_info, "stages": {"foo": {"cmd": "echo foo"}}}
|
||||
dump_yaml("dvc.lock", lockdata)
|
||||
(tmp_dir / "dvc.lock").dump(lockdata)
|
||||
with pytest.raises(LockfileCorruptedError) as exc_info:
|
||||
Lockfile(dvc, tmp_dir / "dvc.lock").load()
|
||||
|
||||
|
||||
@@ -6,7 +6,7 @@ import pytest
|
||||
from dvc.dvcfile import DVC_FILE_SUFFIX
|
||||
from dvc.exceptions import DvcException, MoveNotDataSourceError
|
||||
from dvc.main import main
|
||||
from dvc.utils.serialize import dump_yaml, load_yaml
|
||||
from dvc.utils.serialize import load_yaml
|
||||
from tests.basic_env import TestDvc, TestDvcGit
|
||||
from tests.func.test_repro import TestRepro
|
||||
from tests.utils import cd
|
||||
@@ -249,9 +249,9 @@ def test_move_output_overlap(tmp_dir, dvc):
|
||||
|
||||
def test_move_meta(tmp_dir, dvc):
|
||||
(stage,) = tmp_dir.dvc_gen("foo", "foo")
|
||||
data = load_yaml(stage.path)
|
||||
data = (tmp_dir / stage.path).parse()
|
||||
data["meta"] = {"custom_key": 42}
|
||||
dump_yaml(stage.path, data)
|
||||
(tmp_dir / stage.path).dump(data)
|
||||
|
||||
dvc.move("foo", "bar")
|
||||
res = (tmp_dir / "bar.dvc").read_text()
|
||||
|
||||
@@ -7,7 +7,6 @@ from pygtrie import Trie
|
||||
from dvc.repo.index import Index
|
||||
from dvc.stage import PipelineStage, Stage
|
||||
from dvc.utils import relpath
|
||||
from tests.func.plots.utils import _write_json
|
||||
|
||||
|
||||
def test_index(tmp_dir, scm, dvc, run_copy):
|
||||
@@ -103,7 +102,9 @@ def test_deps_outs_getters(tmp_dir, dvc, run_copy_metrics):
|
||||
params=["param"],
|
||||
name="copy-metrics",
|
||||
)
|
||||
_write_json(tmp_dir, [{"a": 1, "b": 2}, {"a": 2, "b": 3}], "metric_t.json")
|
||||
(tmp_dir / "metric_t.json").dump_json(
|
||||
[{"a": 1, "b": 2}, {"a": 2, "b": 3}], sort_keys=True
|
||||
)
|
||||
run_stage2 = run_copy_metrics(
|
||||
"metric_t.json",
|
||||
"metric.json",
|
||||
|
||||
@@ -1244,7 +1244,7 @@ def test_repro_when_cmd_changes(tmp_dir, dvc, run_copy, mocker):
|
||||
|
||||
data = SingleStageFile(dvc, stage.path)._load()[0]
|
||||
data["cmd"] = " ".join(stage.cmd.split()) # change cmd spacing by two
|
||||
dump_yaml(stage.path, data)
|
||||
(tmp_dir / stage.path).dump(data)
|
||||
|
||||
assert dvc.status([stage.addressing]) == {
|
||||
stage.addressing: ["changed checksum"]
|
||||
|
||||
@@ -9,17 +9,17 @@ from dvc.dvcfile import PIPELINE_FILE, PIPELINE_LOCK
|
||||
from dvc.exceptions import CyclicGraphError, ReproductionError
|
||||
from dvc.main import main
|
||||
from dvc.stage import PipelineStage
|
||||
from dvc.utils.serialize import dump_yaml, load_yaml
|
||||
from tests.func import test_repro
|
||||
from tests.utils.scriptify import scriptify
|
||||
|
||||
COPY_SCRIPT_FORMAT = dedent(
|
||||
"""\
|
||||
import sys
|
||||
|
||||
def copy_script(src, dest):
|
||||
import shutil
|
||||
shutil.copyfile({}, {})
|
||||
"""
|
||||
)
|
||||
COPY_SCRIPT = COPY_SCRIPT_FORMAT.format("sys.argv[1]", "sys.argv[2]")
|
||||
|
||||
shutil.copyfile(src, dest)
|
||||
|
||||
|
||||
COPY_SCRIPT, _ = scriptify(copy_script)
|
||||
|
||||
|
||||
class MultiStageRun:
|
||||
@@ -317,7 +317,7 @@ def test_repro_when_new_deps_is_added_in_dvcfile(tmp_dir, dvc, run_copy):
|
||||
dvcfile = Dvcfile(dvc, stage.path)
|
||||
data, _ = dvcfile._load()
|
||||
data["stages"]["copy-file"]["deps"] += ["copy.py"]
|
||||
dump_yaml(stage.path, data)
|
||||
(tmp_dir / stage.path).dump(data)
|
||||
|
||||
assert dvc.reproduce(target)[0] == stage
|
||||
|
||||
@@ -339,7 +339,7 @@ def test_repro_when_new_outs_is_added_in_dvcfile(tmp_dir, dvc):
|
||||
dvcfile = Dvcfile(dvc, stage.path)
|
||||
data, _ = dvcfile._load()
|
||||
data["stages"]["copy-file"]["outs"] = ["foobar"]
|
||||
dump_yaml(stage.path, data)
|
||||
(tmp_dir / stage.path).dump(data)
|
||||
|
||||
assert dvc.reproduce(target)[0] == stage
|
||||
|
||||
@@ -358,7 +358,10 @@ def test_repro_when_new_deps_is_moved(tmp_dir, dvc):
|
||||
target = ":copy-file"
|
||||
assert not dvc.reproduce(target)
|
||||
|
||||
tmp_dir.gen("copy.py", COPY_SCRIPT_FORMAT.format("'bar'", "'foobar'"))
|
||||
# hardcode values in source code, ignore sys.argv
|
||||
tmp_dir.gen(
|
||||
"copy.py", COPY_SCRIPT.replace("func(*argv)", 'func("bar", "foobar")')
|
||||
)
|
||||
from shutil import move
|
||||
|
||||
move("foo", "bar")
|
||||
@@ -366,7 +369,7 @@ def test_repro_when_new_deps_is_moved(tmp_dir, dvc):
|
||||
dvcfile = Dvcfile(dvc, stage.path)
|
||||
data, _ = dvcfile._load()
|
||||
data["stages"]["copy-file"]["deps"] = ["bar"]
|
||||
dump_yaml(stage.path, data)
|
||||
(tmp_dir / stage.path).dump(data)
|
||||
|
||||
assert dvc.reproduce(target)[0] == stage
|
||||
|
||||
@@ -376,8 +379,7 @@ def test_repro_when_new_out_overlaps_others_stage_outs(tmp_dir, dvc):
|
||||
|
||||
tmp_dir.gen({"dir": {"file1": "file1"}, "foo": "foo"})
|
||||
dvc.add("dir")
|
||||
dump_yaml(
|
||||
PIPELINE_FILE,
|
||||
(tmp_dir / PIPELINE_FILE).dump(
|
||||
{
|
||||
"stages": {
|
||||
"run-copy": {
|
||||
@@ -395,8 +397,7 @@ def test_repro_when_new_out_overlaps_others_stage_outs(tmp_dir, dvc):
|
||||
def test_repro_when_new_deps_added_does_not_exist(tmp_dir, dvc):
|
||||
tmp_dir.gen("copy.py", COPY_SCRIPT)
|
||||
tmp_dir.gen("foo", "foo")
|
||||
dump_yaml(
|
||||
PIPELINE_FILE,
|
||||
(tmp_dir / PIPELINE_FILE).dump(
|
||||
{
|
||||
"stages": {
|
||||
"run-copy": {
|
||||
@@ -414,8 +415,7 @@ def test_repro_when_new_deps_added_does_not_exist(tmp_dir, dvc):
|
||||
def test_repro_when_new_outs_added_does_not_exist(tmp_dir, dvc):
|
||||
tmp_dir.gen("copy.py", COPY_SCRIPT)
|
||||
tmp_dir.gen("foo", "foo")
|
||||
dump_yaml(
|
||||
PIPELINE_FILE,
|
||||
(tmp_dir / PIPELINE_FILE).dump(
|
||||
{
|
||||
"stages": {
|
||||
"run-copy": {
|
||||
@@ -433,8 +433,7 @@ def test_repro_when_new_outs_added_does_not_exist(tmp_dir, dvc):
|
||||
def test_repro_when_lockfile_gets_deleted(tmp_dir, dvc):
|
||||
tmp_dir.gen("copy.py", COPY_SCRIPT)
|
||||
tmp_dir.gen("foo", "foo")
|
||||
dump_yaml(
|
||||
PIPELINE_FILE,
|
||||
(tmp_dir / PIPELINE_FILE).dump(
|
||||
{
|
||||
"stages": {
|
||||
"run-copy": {
|
||||
@@ -464,13 +463,13 @@ def test_cyclic_graph_error(tmp_dir, dvc, run_copy):
|
||||
run_copy("bar", "baz", name="copy-bar-baz")
|
||||
run_copy("baz", "foobar", name="copy-baz-foobar")
|
||||
|
||||
data = load_yaml(PIPELINE_FILE)
|
||||
data = (tmp_dir / PIPELINE_FILE).parse()
|
||||
data["stages"]["copy-baz-foo"] = {
|
||||
"cmd": "echo baz > foo",
|
||||
"deps": ["baz"],
|
||||
"outs": ["foo"],
|
||||
}
|
||||
dump_yaml(PIPELINE_FILE, data)
|
||||
(tmp_dir / PIPELINE_FILE).dump(data)
|
||||
with pytest.raises(CyclicGraphError):
|
||||
dvc.reproduce(":copy-baz-foo")
|
||||
|
||||
@@ -479,8 +478,8 @@ def test_repro_multiple_params(tmp_dir, dvc):
|
||||
from dvc.stage.utils import split_params_deps
|
||||
from tests.func.test_run_multistage import supported_params
|
||||
|
||||
dump_yaml(tmp_dir / "params2.yaml", supported_params)
|
||||
dump_yaml(tmp_dir / "params.yaml", supported_params)
|
||||
(tmp_dir / "params2.yaml").dump(supported_params)
|
||||
(tmp_dir / "params.yaml").dump(supported_params)
|
||||
|
||||
(tmp_dir / "foo").write_text("foo")
|
||||
stage = dvc.run(
|
||||
@@ -522,7 +521,7 @@ def test_repro_multiple_params(tmp_dir, dvc):
|
||||
assert not dvc.reproduce(stage.addressing)
|
||||
params = deepcopy(supported_params)
|
||||
params["answer"] = 43
|
||||
dump_yaml(tmp_dir / "params.yaml", params)
|
||||
(tmp_dir / "params.yaml").dump(params)
|
||||
|
||||
assert dvc.reproduce(stage.addressing) == [stage]
|
||||
|
||||
@@ -533,7 +532,7 @@ def test_repro_list_of_commands_in_order(tmp_dir, dvc, multiline):
|
||||
if multiline:
|
||||
cmd = "\n".join(cmd)
|
||||
|
||||
dump_yaml("dvc.yaml", {"stages": {"multi": {"cmd": cmd}}})
|
||||
(tmp_dir / "dvc.yaml").dump({"stages": {"multi": {"cmd": cmd}}})
|
||||
|
||||
(tmp_dir / "dvc.yaml").write_text(
|
||||
dedent(
|
||||
@@ -559,7 +558,7 @@ def test_repro_list_of_commands_raise_and_stops_after_failure(
|
||||
if multiline:
|
||||
cmd = "\n".join(cmd)
|
||||
|
||||
dump_yaml("dvc.yaml", {"stages": {"multi": {"cmd": cmd}}})
|
||||
(tmp_dir / "dvc.yaml").dump({"stages": {"multi": {"cmd": cmd}}})
|
||||
|
||||
with pytest.raises(ReproductionError):
|
||||
dvc.reproduce(targets=["multi"])
|
||||
|
||||
Some files were not shown because too many files have changed in this diff Show More
Reference in New Issue
Block a user