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4b9a4114fe |
@@ -5,6 +5,7 @@ on:
|
||||
- master
|
||||
release:
|
||||
types: [released, prereleased]
|
||||
workflow_dispatch:
|
||||
jobs:
|
||||
deb:
|
||||
runs-on: ubuntu-18.04
|
||||
|
||||
@@ -1,12 +1,8 @@
|
||||
name: Tests
|
||||
|
||||
on:
|
||||
pull_request:
|
||||
branches:
|
||||
- master
|
||||
push:
|
||||
branches:
|
||||
- master
|
||||
pull_request: {}
|
||||
push: {}
|
||||
schedule:
|
||||
- cron: '5 1 * * *' # every day at 01:05
|
||||
|
||||
@@ -17,6 +13,7 @@ env:
|
||||
|
||||
jobs:
|
||||
lint:
|
||||
timeout-minutes: 10
|
||||
runs-on: ubuntu-latest
|
||||
steps:
|
||||
- uses: actions/[email protected]
|
||||
@@ -27,7 +24,7 @@ jobs:
|
||||
- name: Install requirements
|
||||
run: |
|
||||
pip install wheel
|
||||
pip install ".[all,tests]" Pygments collective.checkdocs pre-commit
|
||||
pip install ".[all,tests,terraform]" Pygments collective.checkdocs pre-commit
|
||||
- name: install temporary dependencies
|
||||
run: |
|
||||
pip install git+https://github.com/isidentical/gdrivefs@service-account
|
||||
@@ -36,6 +33,7 @@ jobs:
|
||||
run: python setup.py checkdocs
|
||||
- uses: pre-commit/[email protected]
|
||||
tests:
|
||||
timeout-minutes: 45
|
||||
runs-on: ${{ matrix.os }}
|
||||
strategy:
|
||||
fail-fast: false
|
||||
@@ -77,7 +75,7 @@ jobs:
|
||||
if: steps.cache.pip-cache-dir.cache-hit != 'true'
|
||||
run: |
|
||||
pip install --upgrade pip setuptools wheel
|
||||
pip install -e ".[all,tests]"
|
||||
pip install -e ".[all,tests,terraform]"
|
||||
- name: install temporary dependencies
|
||||
run: |
|
||||
pip install git+https://github.com/isidentical/gdrivefs@service-account
|
||||
@@ -101,6 +99,7 @@ jobs:
|
||||
run: |
|
||||
echo "extra_test_args=--disable-gdrive" >> $GITHUB_ENV
|
||||
- name: run tests
|
||||
timeout-minutes: 30
|
||||
env:
|
||||
GDRIVE_CREDENTIALS_DATA: ${{ secrets.GDRIVE_CREDENTIALS_DATA }}
|
||||
AWS_ACCESS_KEY_ID: ${{ secrets.AWS_ACCESS_KEY_ID }}
|
||||
@@ -113,7 +112,7 @@ jobs:
|
||||
--cov-report=xml --cov-report=term
|
||||
--all ${{ env.extra_test_args }}
|
||||
- name: upload coverage report
|
||||
uses: codecov/codecov-action@v2.0.2
|
||||
uses: codecov/codecov-action@v2.1.0
|
||||
with:
|
||||
file: ./coverage.xml
|
||||
fail_ci_if_error: false
|
||||
|
||||
@@ -6,7 +6,7 @@ repos:
|
||||
- id: black
|
||||
language_version: python3
|
||||
repo: https://github.com/ambv/black
|
||||
rev: 21.7b0
|
||||
rev: 21.8b0
|
||||
- hooks:
|
||||
- id: codespell
|
||||
args:
|
||||
|
||||
+1
-1
@@ -1,3 +1,3 @@
|
||||
include fastentrypoints.py
|
||||
include LICENSE
|
||||
include test_requirements.txt
|
||||
recursive-include requirements *.txt
|
||||
|
||||
+50
-40
@@ -8,7 +8,7 @@
|
||||
• `Tutorial <https://dvc.org/doc/get-started>`_
|
||||
• `Mailing List <https://sweedom.us10.list-manage.com/subscribe/post?u=a08bf93caae4063c4e6a351f6&id=24c0ecc49a>`_
|
||||
|
||||
|Release| |CI| |Maintainability| |Coverage| |Donate| |DOI|
|
||||
|CI| |Maintainability| |Coverage| |Donate| |DOI|
|
||||
|
||||
|PyPI| |Packages| |Brew| |Conda| |Choco| |Snap|
|
||||
|
||||
@@ -20,8 +20,9 @@ learning projects. Key features:
|
||||
#. Simple **command line** Git-like experience. Does not require installing and maintaining
|
||||
any databases. Does not depend on any proprietary online services.
|
||||
|
||||
#. Management and versioning of **datasets** and **machine learning models**. Data is saved in
|
||||
S3, Google cloud, Azure, Alibaba cloud, SSH server, HDFS, or even local HDD RAID.
|
||||
#. Management and versioning of **datasets** and **machine learning
|
||||
models**. Data can be saved in S3, Google cloud, Azure, Alibaba
|
||||
cloud, SSH server, HDFS, or even local HDD RAID.
|
||||
|
||||
#. Makes projects **reproducible** and **shareable**; helping to answer questions about how
|
||||
a model was built.
|
||||
@@ -65,25 +66,25 @@ Quick start
|
||||
|
||||
Please read `Get Started <https://dvc.org/doc/get-started>`_ guide for a full version. Common workflow commands include:
|
||||
|
||||
+-----------------------------------+-------------------------------------------------------------------+
|
||||
| Step | Command |
|
||||
+===================================+===================================================================+
|
||||
| Track data | | ``$ git add train.py`` |
|
||||
| | | ``$ dvc add images.zip`` |
|
||||
+-----------------------------------+-------------------------------------------------------------------+
|
||||
| Connect code and data by commands | | ``$ dvc run -d images.zip -o images/ unzip -q images.zip`` |
|
||||
| | | ``$ dvc run -d images/ -d train.py -o model.p python train.py`` |
|
||||
+-----------------------------------+-------------------------------------------------------------------+
|
||||
| Make changes and reproduce | | ``$ vi train.py`` |
|
||||
| | | ``$ dvc repro model.p.dvc`` |
|
||||
+-----------------------------------+-------------------------------------------------------------------+
|
||||
| Share code | | ``$ git add .`` |
|
||||
| | | ``$ git commit -m 'The baseline model'`` |
|
||||
| | | ``$ git push`` |
|
||||
+-----------------------------------+-------------------------------------------------------------------+
|
||||
| Share data and ML models | | ``$ dvc remote add myremote -d s3://mybucket/image_cnn`` |
|
||||
| | | ``$ dvc push`` |
|
||||
+-----------------------------------+-------------------------------------------------------------------+
|
||||
+-----------------------------------+----------------------------------------------------------------------------+
|
||||
| Step | Command |
|
||||
+===================================+============================================================================+
|
||||
| Track data | | ``$ git add train.py`` |
|
||||
| | | ``$ dvc add images.zip`` |
|
||||
+-----------------------------------+----------------------------------------------------------------------------+
|
||||
| Connect code and data by commands | | ``$ dvc run -n prepare -d images.zip -o images/ unzip -q images.zip`` |
|
||||
| | | ``$ dvc run -n train -d images/ -d train.py -o model.p python train.py`` |
|
||||
+-----------------------------------+----------------------------------------------------------------------------+
|
||||
| Make changes and reproduce | | ``$ vi train.py`` |
|
||||
| | | ``$ dvc repro model.p.dvc`` |
|
||||
+-----------------------------------+----------------------------------------------------------------------------+
|
||||
| Share code | | ``$ git add .`` |
|
||||
| | | ``$ git commit -m 'The baseline model'`` |
|
||||
| | | ``$ git push`` |
|
||||
+-----------------------------------+----------------------------------------------------------------------------+
|
||||
| Share data and ML models | | ``$ dvc remote add myremote -d s3://mybucket/image_cnn`` |
|
||||
| | | ``$ dvc push`` |
|
||||
+-----------------------------------+----------------------------------------------------------------------------+
|
||||
|
||||
Installation
|
||||
============
|
||||
@@ -182,30 +183,37 @@ Fedora / CentOS (rpm)
|
||||
Comparison to related technologies
|
||||
==================================
|
||||
|
||||
#. *Data Engineering* tools such as `AirFlow <https://airflow.apache.org/>`_, `Luigi <https://github.com/spotify/luigi>`_ and
|
||||
others - in DVC data, model and ML pipelines represent a single ML project and focuses on data scientist' experience while
|
||||
data engineering pipeline orchestrates multiple data projects and focuses on efficient execution. DVC project can be used
|
||||
from data pipeline as a single execution step. `AirFlow DVC <https://github.com/covid-genomics/airflow-dvc>`_ is an example
|
||||
of such integration.
|
||||
#. Data Engineering tools such as `AirFlow <https://airflow.apache.org/>`,
|
||||
`Luigi <https://github.com/spotify/luigi>`, and others - in DVC data,
|
||||
model and ML pipelines represent a single ML project focused on data
|
||||
scientists' experience. Data engineering tools orchestrate multiple data
|
||||
projects and focus on efficient execution. A DVC project can be used from
|
||||
existing data pipelines as a single execution step.
|
||||
|
||||
#. `Git-annex <https://git-annex.branchable.com/>`_ - DVC uses the idea of storing the content of large files (which should
|
||||
not be in a Git repository) in a local key-value store, and uses file hardlinks/symlinks instead of
|
||||
copying/duplicating files.
|
||||
|
||||
#. `Git-LFS <https://git-lfs.github.com/>`_ - DVC is compatible with any remote storage (S3, Google Cloud, Azure, SSH,
|
||||
etc). DVC also uses reflinks or hardlinks to avoid copy operations on checkouts; thus handling large data files
|
||||
much more efficiently.
|
||||
#. `Git-LFS <https://git-lfs.github.com/>`_ - DVC is compatible with many
|
||||
remote storage services (S3, Google Cloud, Azure, SSH, etc). DVC also
|
||||
uses reflinks or hardlinks to avoid copy operations on checkouts; thus
|
||||
handling large data files much more efficiently.
|
||||
|
||||
#. *Makefile* (and analogues including ad-hoc scripts) - DVC tracks dependencies (in a directed acyclic graph).
|
||||
#. Makefile (and analogues including ad-hoc scripts) - DVC tracks
|
||||
dependencies (in a directed acyclic graph).
|
||||
|
||||
#. `Workflow Management Systems <https://en.wikipedia.org/wiki/Workflow_management_system>`_ - DVC is a workflow
|
||||
management system designed specifically to manage machine learning experiments. DVC is built on top of Git.
|
||||
|
||||
#. `DAGsHub <https://dagshub.com/>`_ - online service of Git+DVC repositories with pipeline and metrics visualization and
|
||||
DVC-specific cloud storage.
|
||||
#. `DAGsHub <https://dagshub.com/>`_ - online service to host DVC
|
||||
projects. It provides a useful UI around DVC repositories and integrates
|
||||
other tools.
|
||||
|
||||
#. `DVC Studio <https://studio.iterative.ai/>`_ - online service of DVC repositories visualisation from DVC team. Also,
|
||||
integrated with `CML (CI/CD for ML) <https://cml.dev/>`_ for training models in clouds and Kubernetes.
|
||||
#. `DVC Studio <https://studio.iterative.ai/>`_ - official online
|
||||
platform for DVC projects. It can be used to manage data and models, run
|
||||
and track experiments, and visualize and share results. Also, it
|
||||
integrates with `CML (CI/CD for ML) <https://cml.dev/>` for training
|
||||
models in the cloud or Kubernetes.
|
||||
|
||||
|
||||
Contributing
|
||||
@@ -214,7 +222,9 @@ Contributing
|
||||
|Maintainability| |Donate|
|
||||
|
||||
Contributions are welcome! Please see our `Contributing Guide <https://dvc.org/doc/user-guide/contributing/core>`_ for more
|
||||
details.
|
||||
details. Thanks to all our contributors!
|
||||
|
||||
|Contribs|
|
||||
|
||||
Mailing List
|
||||
============
|
||||
@@ -244,10 +254,6 @@ Barrak, A., Eghan, E.E. and Adams, B. `On the Co-evolution of ML Pipelines and S
|
||||
:target: https://dvc.org
|
||||
:alt: DVC logo
|
||||
|
||||
.. |Release| image:: https://img.shields.io/badge/release-ok-brightgreen
|
||||
:target: https://travis-ci.com/iterative/dvc/branches
|
||||
:alt: Release
|
||||
|
||||
.. |CI| image:: https://github.com/iterative/dvc/workflows/Tests/badge.svg?branch=master
|
||||
:target: https://github.com/iterative/dvc/actions
|
||||
:alt: GHA Tests
|
||||
@@ -295,3 +301,7 @@ Barrak, A., Eghan, E.E. and Adams, B. `On the Co-evolution of ML Pipelines and S
|
||||
.. |Flowchart| image:: https://dvc.org/img/flow.gif
|
||||
:target: https://dvc.org/img/flow.gif
|
||||
:alt: how_dvc_works
|
||||
|
||||
.. |Contribs| image:: https://contrib.rocks/image?repo=iterative/dvc
|
||||
:target: https://github.com/iterative/dvc/graphs/contributors
|
||||
:alt: Contributors
|
||||
|
||||
@@ -30,6 +30,7 @@ from .command import (
|
||||
install,
|
||||
live,
|
||||
ls,
|
||||
machine,
|
||||
metrics,
|
||||
move,
|
||||
params,
|
||||
@@ -87,6 +88,7 @@ COMMANDS = [
|
||||
experiments,
|
||||
check_ignore,
|
||||
live,
|
||||
machine,
|
||||
]
|
||||
|
||||
|
||||
|
||||
+17
-4
@@ -66,7 +66,8 @@ class CmdConfig(CmdBaseNoRepo):
|
||||
)
|
||||
return 1
|
||||
|
||||
levels = [self.args.level] if self.args.level else self.config.LEVELS
|
||||
levels = self._get_appropriate_levels(self.args.level)
|
||||
|
||||
for level in levels:
|
||||
conf = self.config.read(level)
|
||||
prefix = self._config_file_prefix(
|
||||
@@ -81,9 +82,7 @@ class CmdConfig(CmdBaseNoRepo):
|
||||
def _get(self, remote, section, opt):
|
||||
from dvc.config import ConfigError
|
||||
|
||||
levels = (
|
||||
[self.args.level] if self.args.level else self.config.LEVELS[::-1]
|
||||
)
|
||||
levels = self._get_appropriate_levels(self.args.level)[::-1]
|
||||
|
||||
for level in levels:
|
||||
conf = self.config.read(level)
|
||||
@@ -136,6 +135,20 @@ class CmdConfig(CmdBaseNoRepo):
|
||||
f"option '{opt}' doesn't exist in {name} '{section}'"
|
||||
)
|
||||
|
||||
def _get_appropriate_levels(self, levels):
|
||||
if levels:
|
||||
self._validate_level_for_non_repo_operation(levels)
|
||||
return [levels]
|
||||
if self.config.dvc_dir is None:
|
||||
return self.config.SYSTEM_LEVELS
|
||||
return self.config.LEVELS
|
||||
|
||||
def _validate_level_for_non_repo_operation(self, level):
|
||||
from dvc.config import ConfigError
|
||||
|
||||
if self.config.dvc_dir is None and level in self.config.REPO_LEVELS:
|
||||
raise ConfigError("Not inside a DVC repo")
|
||||
|
||||
@staticmethod
|
||||
def _format_config(config, prefix=""):
|
||||
from dvc.utils.flatten import flatten
|
||||
|
||||
+210
-36
@@ -1,5 +1,6 @@
|
||||
import argparse
|
||||
import logging
|
||||
import os
|
||||
from collections import Counter, OrderedDict, defaultdict
|
||||
from datetime import date, datetime
|
||||
from fnmatch import fnmatch
|
||||
@@ -141,6 +142,8 @@ def _collect_rows(
|
||||
precision=DEFAULT_PRECISION,
|
||||
sort_by=None,
|
||||
sort_order=None,
|
||||
fill_value=FILL_VALUE,
|
||||
iso=False,
|
||||
):
|
||||
from dvc.scm.git import Git
|
||||
|
||||
@@ -161,8 +164,8 @@ def _collect_rows(
|
||||
elif exp.get("queued"):
|
||||
state = "Queued"
|
||||
else:
|
||||
state = FILL_VALUE
|
||||
executor = exp.get("executor", FILL_VALUE)
|
||||
state = fill_value
|
||||
executor = exp.get("executor", fill_value)
|
||||
is_baseline = rev == "baseline"
|
||||
|
||||
if is_baseline:
|
||||
@@ -202,12 +205,12 @@ def _collect_rows(
|
||||
exp_name,
|
||||
name_rev,
|
||||
typ,
|
||||
_format_time(exp.get("timestamp")),
|
||||
_format_time(exp.get("timestamp"), fill_value, iso),
|
||||
parent,
|
||||
state,
|
||||
executor,
|
||||
]
|
||||
fill_value = FILL_VALUE_ERRORED if results.get("error") else FILL_VALUE
|
||||
fill_value = FILL_VALUE_ERRORED if results.get("error") else fill_value
|
||||
_extend_row(
|
||||
row,
|
||||
metric_names,
|
||||
@@ -274,14 +277,18 @@ def _sort_exp(experiments, sort_path, sort_name, typ, reverse):
|
||||
return ret
|
||||
|
||||
|
||||
def _format_time(timestamp):
|
||||
if timestamp is None:
|
||||
return FILL_VALUE
|
||||
if timestamp.date() == date.today():
|
||||
def _format_time(datetime_obj, fill_value=FILL_VALUE, iso=False):
|
||||
if datetime_obj is None:
|
||||
return fill_value
|
||||
|
||||
if iso:
|
||||
return datetime_obj.isoformat()
|
||||
|
||||
if datetime_obj.date() == date.today():
|
||||
fmt = "%I:%M %p"
|
||||
else:
|
||||
fmt = "%b %d, %Y"
|
||||
return timestamp.strftime(fmt)
|
||||
return datetime_obj.strftime(fmt)
|
||||
|
||||
|
||||
def _extend_row(row, names, items, precision, fill_value=FILL_VALUE):
|
||||
@@ -320,6 +327,7 @@ def _parse_filter_list(param_list):
|
||||
|
||||
def experiments_table(
|
||||
all_experiments,
|
||||
headers,
|
||||
metric_headers,
|
||||
metric_names,
|
||||
param_headers,
|
||||
@@ -327,22 +335,15 @@ def experiments_table(
|
||||
sort_by=None,
|
||||
sort_order=None,
|
||||
precision=DEFAULT_PRECISION,
|
||||
fill_value=FILL_VALUE,
|
||||
iso=False,
|
||||
) -> "TabularData":
|
||||
from funcy import lconcat
|
||||
|
||||
from dvc.compare import TabularData
|
||||
|
||||
headers = [
|
||||
"Experiment",
|
||||
"rev",
|
||||
"typ",
|
||||
"Created",
|
||||
"parent",
|
||||
"State",
|
||||
"Executor",
|
||||
]
|
||||
td = TabularData(
|
||||
lconcat(headers, metric_headers, param_headers), fill_value=FILL_VALUE
|
||||
lconcat(headers, metric_headers, param_headers), fill_value=fill_value
|
||||
)
|
||||
for base_rev, experiments in all_experiments.items():
|
||||
rows = _collect_rows(
|
||||
@@ -353,6 +354,8 @@ def experiments_table(
|
||||
sort_by=sort_by,
|
||||
sort_order=sort_order,
|
||||
precision=precision,
|
||||
fill_value=fill_value,
|
||||
iso=iso,
|
||||
)
|
||||
td.extend(rows)
|
||||
|
||||
@@ -385,8 +388,10 @@ def baseline_styler(typ):
|
||||
|
||||
|
||||
def show_experiments(
|
||||
all_experiments, pager=True, no_timestamp=False, **kwargs
|
||||
all_experiments, pager=True, no_timestamp=False, show_csv=False, **kwargs
|
||||
):
|
||||
from funcy.seqs import flatten as flatten_list
|
||||
|
||||
include_metrics = _parse_filter_list(kwargs.pop("include_metrics", []))
|
||||
exclude_metrics = _parse_filter_list(kwargs.pop("exclude_metrics", []))
|
||||
include_params = _parse_filter_list(kwargs.pop("include_params", []))
|
||||
@@ -399,11 +404,26 @@ def show_experiments(
|
||||
include_params=include_params,
|
||||
exclude_params=exclude_params,
|
||||
)
|
||||
metric_headers = _normalize_headers(metric_names)
|
||||
param_headers = _normalize_headers(param_names)
|
||||
|
||||
headers = [
|
||||
"Experiment",
|
||||
"rev",
|
||||
"typ",
|
||||
"Created",
|
||||
"parent",
|
||||
"State",
|
||||
"Executor",
|
||||
]
|
||||
|
||||
names = {**metric_names, **param_names}
|
||||
counter = Counter(flatten_list([list(a.keys()) for a in names.values()]))
|
||||
counter.update(headers)
|
||||
metric_headers = _normalize_headers(metric_names, counter)
|
||||
param_headers = _normalize_headers(param_names, counter)
|
||||
|
||||
td = experiments_table(
|
||||
all_experiments,
|
||||
headers,
|
||||
metric_headers,
|
||||
metric_names,
|
||||
param_headers,
|
||||
@@ -411,6 +431,8 @@ def show_experiments(
|
||||
kwargs.get("sort_by"),
|
||||
kwargs.get("sort_order"),
|
||||
kwargs.get("precision"),
|
||||
kwargs.get("fill_value"),
|
||||
kwargs.get("iso"),
|
||||
)
|
||||
|
||||
if no_timestamp:
|
||||
@@ -422,9 +444,12 @@ def show_experiments(
|
||||
|
||||
row_styles = lmap(baseline_styler, td.column("typ"))
|
||||
|
||||
merge_headers = ["Experiment", "rev", "typ", "parent"]
|
||||
td.column("Experiment")[:] = map(prepare_exp_id, td.as_dict(merge_headers))
|
||||
td.drop(*merge_headers[1:])
|
||||
if not show_csv:
|
||||
merge_headers = ["Experiment", "rev", "typ", "parent"]
|
||||
td.column("Experiment")[:] = map(
|
||||
prepare_exp_id, td.as_dict(merge_headers)
|
||||
)
|
||||
td.drop(*merge_headers[1:])
|
||||
|
||||
headers = {"metrics": metric_headers, "params": param_headers}
|
||||
styles = {
|
||||
@@ -453,13 +478,11 @@ def show_experiments(
|
||||
rich_table=True,
|
||||
header_styles=styles,
|
||||
row_styles=row_styles,
|
||||
show_csv=show_csv,
|
||||
)
|
||||
|
||||
|
||||
def _normalize_headers(names):
|
||||
count = Counter(
|
||||
name for path in names for name in names[path] for path in names
|
||||
)
|
||||
def _normalize_headers(names, count):
|
||||
return [
|
||||
name if count[name] == 1 else f"{path}:{name}"
|
||||
for path in names
|
||||
@@ -493,6 +516,14 @@ class CmdExperimentsShow(CmdBase):
|
||||
|
||||
ui.write(json.dumps(all_experiments, default=_format_json))
|
||||
else:
|
||||
precision = (
|
||||
self.args.precision or None
|
||||
if self.args.show_csv
|
||||
else DEFAULT_PRECISION
|
||||
)
|
||||
fill_value = "" if self.args.show_csv else FILL_VALUE
|
||||
iso = True if self.args.show_csv else False
|
||||
|
||||
show_experiments(
|
||||
all_experiments,
|
||||
include_metrics=self.args.include_metrics,
|
||||
@@ -502,8 +533,11 @@ class CmdExperimentsShow(CmdBase):
|
||||
no_timestamp=self.args.no_timestamp,
|
||||
sort_by=self.args.sort_by,
|
||||
sort_order=self.args.sort_order,
|
||||
precision=self.args.precision or DEFAULT_PRECISION,
|
||||
precision=precision,
|
||||
fill_value=fill_value,
|
||||
iso=iso,
|
||||
pager=not self.args.no_pager,
|
||||
show_csv=self.args.show_csv,
|
||||
)
|
||||
return 0
|
||||
|
||||
@@ -747,12 +781,71 @@ class CmdExperimentsRemove(CmdBase):
|
||||
def run(self):
|
||||
|
||||
self.repo.experiments.remove(
|
||||
exp_names=self.args.experiment, queue=self.args.queue
|
||||
exp_names=self.args.experiment,
|
||||
queue=self.args.queue,
|
||||
clear_all=self.args.all,
|
||||
remote=self.args.git_remote,
|
||||
)
|
||||
|
||||
return 0
|
||||
|
||||
|
||||
class CmdExperimentsInit(CmdBase):
|
||||
CODE = "src"
|
||||
DATA = "data"
|
||||
MODELS = "models"
|
||||
DEFAULT_METRICS = "metrics.json"
|
||||
DEFAULT_PARAMS = "params.yaml"
|
||||
PLOTS = "plots"
|
||||
DVCLIVE = "dvclive"
|
||||
DEFAULT_NAME = "default"
|
||||
|
||||
def run(self):
|
||||
from dvc.command.stage import parse_cmd
|
||||
|
||||
cmd = parse_cmd(self.args.cmd)
|
||||
if not cmd:
|
||||
raise InvalidArgumentError("command is not specified")
|
||||
if self.args.interactive:
|
||||
raise NotImplementedError(
|
||||
"'-i/--interactive' is not implemented yet."
|
||||
)
|
||||
if self.args.explicit:
|
||||
raise NotImplementedError("'--explicit' is not implemented yet.")
|
||||
if self.args.template:
|
||||
raise NotImplementedError("template is not supported yet.")
|
||||
|
||||
from dvc.utils.serialize import LOADERS
|
||||
|
||||
code = self.args.code or self.CODE
|
||||
data = self.args.data or self.DATA
|
||||
models = self.args.models or self.MODELS
|
||||
metrics = self.args.metrics or self.DEFAULT_METRICS
|
||||
params_path = self.args.params or self.DEFAULT_PARAMS
|
||||
plots = self.args.plots or self.PLOTS
|
||||
dvclive = self.args.live or self.DVCLIVE
|
||||
|
||||
_, ext = os.path.splitext(params_path)
|
||||
params = list(LOADERS[ext](params_path))
|
||||
|
||||
name = self.args.name or self.DEFAULT_NAME
|
||||
stage = self.repo.stage.add(
|
||||
name=name,
|
||||
cmd=cmd,
|
||||
deps=[code, data],
|
||||
outs=[models],
|
||||
params=[{params_path: params}],
|
||||
metrics_no_cache=[metrics],
|
||||
plots_no_cache=[plots],
|
||||
live=dvclive,
|
||||
force=True,
|
||||
)
|
||||
|
||||
if self.args.run:
|
||||
return self.repo.experiments.run(targets=[stage.addressing])
|
||||
return 0
|
||||
|
||||
|
||||
def add_parser(subparsers, parent_parser):
|
||||
EXPERIMENTS_HELP = "Commands to run and compare experiments."
|
||||
|
||||
@@ -880,6 +973,12 @@ def add_parser(subparsers, parent_parser):
|
||||
default=False,
|
||||
help="Print output in JSON format instead of a human-readable table.",
|
||||
)
|
||||
experiments_show_parser.add_argument(
|
||||
"--show-csv",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Print output in csv format instead of a human-readable table.",
|
||||
)
|
||||
experiments_show_parser.add_argument(
|
||||
"--precision",
|
||||
type=int,
|
||||
@@ -1109,9 +1208,9 @@ def add_parser(subparsers, parent_parser):
|
||||
nargs="?",
|
||||
default=None,
|
||||
help=(
|
||||
"Optional Git remote name or Git URL. If provided, experiments "
|
||||
"from the specified Git repository will be listed instead of "
|
||||
"local experiments."
|
||||
"Optional Git remote name or Git URL. "
|
||||
"If provided, experiments from the specified Git repository "
|
||||
" will be listed instead of local ones."
|
||||
),
|
||||
metavar="[<git_remote>]",
|
||||
)
|
||||
@@ -1229,7 +1328,7 @@ def add_parser(subparsers, parent_parser):
|
||||
)
|
||||
experiments_pull_parser.set_defaults(func=CmdExperimentsPull)
|
||||
|
||||
EXPERIMENTS_REMOVE_HELP = "Remove local experiments."
|
||||
EXPERIMENTS_REMOVE_HELP = "Remove experiments."
|
||||
experiments_remove_parser = experiments_subparsers.add_parser(
|
||||
"remove",
|
||||
parents=[parent_parser],
|
||||
@@ -1237,9 +1336,22 @@ def add_parser(subparsers, parent_parser):
|
||||
help=EXPERIMENTS_REMOVE_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
experiments_remove_parser.add_argument(
|
||||
remove_group = experiments_remove_parser.add_mutually_exclusive_group()
|
||||
remove_group.add_argument(
|
||||
"--queue", action="store_true", help="Remove all queued experiments."
|
||||
)
|
||||
remove_group.add_argument(
|
||||
"-A",
|
||||
"--all",
|
||||
action="store_true",
|
||||
help="Remove all committed experiments.",
|
||||
)
|
||||
remove_group.add_argument(
|
||||
"-g",
|
||||
"--git-remote",
|
||||
metavar="<git_remote>",
|
||||
help="Name or URL of the Git remote to remove the experiment from",
|
||||
)
|
||||
experiments_remove_parser.add_argument(
|
||||
"experiment",
|
||||
nargs="*",
|
||||
@@ -1248,6 +1360,68 @@ def add_parser(subparsers, parent_parser):
|
||||
)
|
||||
experiments_remove_parser.set_defaults(func=CmdExperimentsRemove)
|
||||
|
||||
EXPERIMENTS_INIT_HELP = "Initialize experiments."
|
||||
experiments_init_parser = experiments_subparsers.add_parser(
|
||||
"init",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(EXPERIMENTS_INIT_HELP, "exp/init"),
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
experiments_init_parser.add_argument(
|
||||
"cmd",
|
||||
nargs=argparse.REMAINDER,
|
||||
help="Command to execute.",
|
||||
metavar="command",
|
||||
)
|
||||
experiments_init_parser.add_argument(
|
||||
"--run",
|
||||
action="store_true",
|
||||
help="Run the experiment after initializing it",
|
||||
)
|
||||
experiments_init_parser.add_argument(
|
||||
"--interactive",
|
||||
"-i",
|
||||
action="store_true",
|
||||
help="Prompt for values that are not provided",
|
||||
)
|
||||
experiments_init_parser.add_argument(
|
||||
"--template", help="Stage template to use to fill with provided values"
|
||||
)
|
||||
experiments_init_parser.add_argument(
|
||||
"--explicit", help="Only use the path values explicitly provided"
|
||||
)
|
||||
experiments_init_parser.add_argument(
|
||||
"--name", "-n", help="Name of the stage to create"
|
||||
)
|
||||
experiments_init_parser.add_argument(
|
||||
"--code",
|
||||
help="Path to the source file or directory "
|
||||
"which your experiments depend",
|
||||
)
|
||||
experiments_init_parser.add_argument(
|
||||
"--data",
|
||||
help="Path to the data file or directory "
|
||||
"which your experiments depend",
|
||||
)
|
||||
experiments_init_parser.add_argument(
|
||||
"--models",
|
||||
help="Path to the model file or directory for your experiments",
|
||||
)
|
||||
experiments_init_parser.add_argument(
|
||||
"--params", help="Path to the parameters file for your experiments"
|
||||
)
|
||||
experiments_init_parser.add_argument(
|
||||
"--metrics", help="Path to the metrics file for your experiments"
|
||||
)
|
||||
experiments_init_parser.add_argument(
|
||||
"--plots",
|
||||
help="Path to the plots file or directory for your experiments",
|
||||
)
|
||||
experiments_init_parser.add_argument(
|
||||
"--live", help="Path to log dvclive outputs for your experiments"
|
||||
)
|
||||
experiments_init_parser.set_defaults(func=CmdExperimentsInit)
|
||||
|
||||
|
||||
def _add_run_common(parser):
|
||||
"""Add common args for 'exp run' and 'exp resume'."""
|
||||
|
||||
+5
-4
@@ -1,5 +1,5 @@
|
||||
import argparse
|
||||
import os
|
||||
from pathlib import Path
|
||||
|
||||
from dvc.command import completion
|
||||
from dvc.command.base import CmdBase, fix_subparsers
|
||||
@@ -13,10 +13,11 @@ class CmdLive(CmdBase):
|
||||
metrics, plots = self.repo.live.show(target=target, revs=revs)
|
||||
|
||||
if plots:
|
||||
html_path = self.args.target + ".html"
|
||||
self.repo.plots.write_html(html_path, plots, metrics)
|
||||
html_path = Path.cwd() / (self.args.target + "_html")
|
||||
from dvc.render.utils import render
|
||||
|
||||
ui.write("\nfile://", os.path.abspath(html_path), sep="")
|
||||
index_path = render(self.repo, plots, metrics, html_path)
|
||||
ui.write(index_path.as_uri())
|
||||
return 0
|
||||
return 1
|
||||
|
||||
|
||||
@@ -0,0 +1,333 @@
|
||||
import argparse
|
||||
|
||||
from dvc.command.base import CmdBase, append_doc_link, fix_subparsers
|
||||
from dvc.command.config import CmdConfig
|
||||
from dvc.config import ConfigError
|
||||
from dvc.ui import ui
|
||||
from dvc.utils import format_link
|
||||
|
||||
|
||||
class MachineDisabledError(ConfigError):
|
||||
def __init__(self):
|
||||
super().__init__("Machine feature is disabled")
|
||||
|
||||
|
||||
class CmdMachineConfig(CmdConfig):
|
||||
def __init__(self, args):
|
||||
|
||||
super().__init__(args)
|
||||
if not self.config["feature"].get("machine", False):
|
||||
raise MachineDisabledError
|
||||
|
||||
if getattr(self.args, "name", None):
|
||||
self.args.name = self.args.name.lower()
|
||||
|
||||
def _check_exists(self, conf):
|
||||
if self.args.name not in conf["machine"]:
|
||||
raise ConfigError(f"machine '{self.args.name}' doesn't exist.")
|
||||
|
||||
|
||||
class CmdMachineAdd(CmdMachineConfig):
|
||||
def run(self):
|
||||
from dvc.machine import validate_name
|
||||
|
||||
validate_name(self.args.name)
|
||||
|
||||
if self.args.default:
|
||||
ui.write(f"Setting '{self.args.name}' as a default machine.")
|
||||
|
||||
with self.config.edit(self.args.level) as conf:
|
||||
if self.args.name in conf["machine"] and not self.args.force:
|
||||
raise ConfigError(
|
||||
"machine '{}' already exists. Use `-f|--force` to "
|
||||
"overwrite it.".format(self.args.name)
|
||||
)
|
||||
|
||||
conf["machine"][self.args.name] = {"cloud": self.args.cloud}
|
||||
if self.args.default:
|
||||
conf["core"]["machine"] = self.args.name
|
||||
|
||||
return 0
|
||||
|
||||
|
||||
class CmdMachineRemove(CmdMachineConfig):
|
||||
def run(self):
|
||||
with self.config.edit(self.args.level) as conf:
|
||||
self._check_exists(conf)
|
||||
del conf["machine"][self.args.name]
|
||||
|
||||
up_to_level = self.args.level or "repo"
|
||||
# Remove core.machine refs to this machine in any shadowing configs
|
||||
for level in reversed(self.config.LEVELS):
|
||||
with self.config.edit(level) as conf:
|
||||
if conf["core"].get("machine") == self.args.name:
|
||||
del conf["core"]["machine"]
|
||||
|
||||
if level == up_to_level:
|
||||
break
|
||||
|
||||
return 0
|
||||
|
||||
|
||||
class CmdMachineList(CmdMachineConfig):
|
||||
def run(self):
|
||||
levels = [self.args.level] if self.args.level else self.config.LEVELS
|
||||
for level in levels:
|
||||
conf = self.config.read(level)["machine"]
|
||||
if self.args.name:
|
||||
conf = conf.get(self.args.name, {})
|
||||
prefix = self._config_file_prefix(
|
||||
self.args.show_origin, self.config, level
|
||||
)
|
||||
configs = list(self._format_config(conf, prefix))
|
||||
if configs:
|
||||
ui.write("\n".join(configs))
|
||||
return 0
|
||||
|
||||
|
||||
class CmdMachineModify(CmdMachineConfig):
|
||||
def run(self):
|
||||
from dvc.config import merge
|
||||
|
||||
with self.config.edit(self.args.level) as conf:
|
||||
merged = self.config.load_config_to_level(self.args.level)
|
||||
merge(merged, conf)
|
||||
self._check_exists(merged)
|
||||
|
||||
if self.args.name not in conf["machine"]:
|
||||
conf["machine"][self.args.name] = {}
|
||||
section = conf["machine"][self.args.name]
|
||||
if self.args.unset:
|
||||
section.pop(self.args.option, None)
|
||||
else:
|
||||
section[self.args.option] = self.args.value
|
||||
return 0
|
||||
|
||||
|
||||
class CmdMachineDefault(CmdMachineConfig):
|
||||
def run(self):
|
||||
if self.args.name is None and not self.args.unset:
|
||||
conf = self.config.read(self.args.level)
|
||||
try:
|
||||
print(conf["core"]["machine"])
|
||||
except KeyError:
|
||||
ui.write("No default machine set")
|
||||
return 1
|
||||
else:
|
||||
with self.config.edit(self.args.level) as conf:
|
||||
if self.args.unset:
|
||||
conf["core"].pop("machine", None)
|
||||
else:
|
||||
merged_conf = self.config.load_config_to_level(
|
||||
self.args.level
|
||||
)
|
||||
if (
|
||||
self.args.name in conf["machine"]
|
||||
or self.args.name in merged_conf["machine"]
|
||||
):
|
||||
conf["core"]["machine"] = self.args.name
|
||||
else:
|
||||
raise ConfigError(
|
||||
"default machine must be present in machine "
|
||||
"list."
|
||||
)
|
||||
return 0
|
||||
|
||||
|
||||
class CmdMachineCreate(CmdBase):
|
||||
def run(self):
|
||||
if self.repo.machine is None:
|
||||
raise MachineDisabledError
|
||||
|
||||
self.repo.machine.create(self.args.name)
|
||||
return 0
|
||||
|
||||
|
||||
class CmdMachineDestroy(CmdBase):
|
||||
def run(self):
|
||||
if self.repo.machine is None:
|
||||
raise MachineDisabledError
|
||||
|
||||
self.repo.machine.destroy(self.args.name)
|
||||
return 0
|
||||
|
||||
|
||||
class CmdMachineSsh(CmdBase):
|
||||
def run(self):
|
||||
if self.repo.machine is None:
|
||||
raise MachineDisabledError
|
||||
|
||||
self.repo.machine.run_shell(self.args.name)
|
||||
return 0
|
||||
|
||||
|
||||
def add_parser(subparsers, parent_parser):
|
||||
from dvc.command.config import parent_config_parser
|
||||
|
||||
machine_HELP = "Set up and manage cloud machines."
|
||||
machine_parser = subparsers.add_parser(
|
||||
"machine",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(machine_HELP, "machine"),
|
||||
# NOTE: suppress help during development to hide command
|
||||
# help=machine_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
|
||||
machine_subparsers = machine_parser.add_subparsers(
|
||||
dest="cmd",
|
||||
help="Use `dvc machine CMD --help` for " "command-specific help.",
|
||||
)
|
||||
|
||||
fix_subparsers(machine_subparsers)
|
||||
|
||||
machine_ADD_HELP = "Add a new data machine."
|
||||
machine_add_parser = machine_subparsers.add_parser(
|
||||
"add",
|
||||
parents=[parent_config_parser, parent_parser],
|
||||
description=append_doc_link(machine_ADD_HELP, "machine/add"),
|
||||
help=machine_ADD_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
machine_add_parser.add_argument("name", help="Name of the machine")
|
||||
machine_add_parser.add_argument(
|
||||
"cloud",
|
||||
help="Machine cloud. See full list of supported clouds at {}".format(
|
||||
format_link(
|
||||
"https://github.com/iterative/"
|
||||
"terraform-provider-iterative#machine"
|
||||
)
|
||||
),
|
||||
)
|
||||
machine_add_parser.add_argument(
|
||||
"-d",
|
||||
"--default",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Set as default machine.",
|
||||
)
|
||||
machine_add_parser.add_argument(
|
||||
"-f",
|
||||
"--force",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Force overwriting existing configs",
|
||||
)
|
||||
machine_add_parser.set_defaults(func=CmdMachineAdd)
|
||||
|
||||
machine_DEFAULT_HELP = "Set/unset the default machine."
|
||||
machine_default_parser = machine_subparsers.add_parser(
|
||||
"default",
|
||||
parents=[parent_config_parser, parent_parser],
|
||||
description=append_doc_link(machine_DEFAULT_HELP, "machine/default"),
|
||||
help=machine_DEFAULT_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
machine_default_parser.add_argument(
|
||||
"name", nargs="?", help="Name of the machine"
|
||||
)
|
||||
machine_default_parser.add_argument(
|
||||
"-u",
|
||||
"--unset",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Unset default machine.",
|
||||
)
|
||||
machine_default_parser.set_defaults(func=CmdMachineDefault)
|
||||
|
||||
machine_LIST_HELP = "List the configuration of one/all machines."
|
||||
machine_list_parser = machine_subparsers.add_parser(
|
||||
"list",
|
||||
parents=[parent_config_parser, parent_parser],
|
||||
description=append_doc_link(machine_LIST_HELP, "machine/list"),
|
||||
help=machine_LIST_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
machine_list_parser.add_argument(
|
||||
"--show-origin",
|
||||
default=False,
|
||||
action="store_true",
|
||||
help="Show the source file containing each config value.",
|
||||
)
|
||||
machine_list_parser.add_argument(
|
||||
"name",
|
||||
nargs="?",
|
||||
type=str,
|
||||
help="name of machine to specify",
|
||||
)
|
||||
machine_list_parser.set_defaults(func=CmdMachineList)
|
||||
machine_MODIFY_HELP = "Modify the configuration of an machine."
|
||||
machine_modify_parser = machine_subparsers.add_parser(
|
||||
"modify",
|
||||
parents=[parent_config_parser, parent_parser],
|
||||
description=append_doc_link(machine_MODIFY_HELP, "machine/modify"),
|
||||
help=machine_MODIFY_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
machine_modify_parser.add_argument("name", help="Name of the machine")
|
||||
machine_modify_parser.add_argument(
|
||||
"option", help="Name of the option to modify."
|
||||
)
|
||||
machine_modify_parser.add_argument(
|
||||
"value", nargs="?", help="(optional) Value of the option."
|
||||
)
|
||||
machine_modify_parser.add_argument(
|
||||
"-u",
|
||||
"--unset",
|
||||
default=False,
|
||||
action="store_true",
|
||||
help="Unset option.",
|
||||
)
|
||||
machine_modify_parser.set_defaults(func=CmdMachineModify)
|
||||
|
||||
machine_REMOVE_HELP = "Remove an machine."
|
||||
machine_remove_parser = machine_subparsers.add_parser(
|
||||
"remove",
|
||||
parents=[parent_config_parser, parent_parser],
|
||||
description=append_doc_link(machine_REMOVE_HELP, "machine/remove"),
|
||||
help=machine_REMOVE_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
machine_remove_parser.add_argument(
|
||||
"name", help="Name of the machine to remove."
|
||||
)
|
||||
machine_remove_parser.set_defaults(func=CmdMachineRemove)
|
||||
|
||||
machine_CREATE_HELP = "Create and start a machine instance."
|
||||
machine_create_parser = machine_subparsers.add_parser(
|
||||
"create",
|
||||
parents=[parent_config_parser, parent_parser],
|
||||
description=append_doc_link(machine_CREATE_HELP, "machine/create"),
|
||||
help=machine_CREATE_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
machine_create_parser.add_argument(
|
||||
"name", help="Name of the machine to create."
|
||||
)
|
||||
machine_create_parser.set_defaults(func=CmdMachineCreate)
|
||||
|
||||
machine_DESTROY_HELP = "Destroy an machine instance."
|
||||
machine_destroy_parser = machine_subparsers.add_parser(
|
||||
"destroy",
|
||||
parents=[parent_config_parser, parent_parser],
|
||||
description=append_doc_link(machine_DESTROY_HELP, "machine/destroy"),
|
||||
help=machine_DESTROY_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
machine_destroy_parser.add_argument(
|
||||
"name", help="Name of the machine instance to destroy."
|
||||
)
|
||||
machine_destroy_parser.set_defaults(func=CmdMachineDestroy)
|
||||
|
||||
machine_SSH_HELP = "Connect to a machine via SSH."
|
||||
machine_ssh_parser = machine_subparsers.add_parser(
|
||||
"ssh",
|
||||
parents=[parent_config_parser, parent_parser],
|
||||
description=append_doc_link(machine_SSH_HELP, "machine/ssh"),
|
||||
help=machine_SSH_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
machine_ssh_parser.add_argument(
|
||||
"name", help="Name of the machine instance to connect to."
|
||||
)
|
||||
machine_ssh_parser.set_defaults(func=CmdMachineSsh)
|
||||
+28
-20
@@ -4,6 +4,7 @@ import logging
|
||||
from dvc.command import completion
|
||||
from dvc.command.base import CmdBase, append_doc_link, fix_subparsers
|
||||
from dvc.exceptions import DvcException
|
||||
from dvc.render.utils import find_vega, render
|
||||
from dvc.ui import ui
|
||||
from dvc.utils import format_link
|
||||
|
||||
@@ -35,43 +36,50 @@ class CmdPlots(CmdBase):
|
||||
return 1
|
||||
|
||||
try:
|
||||
plots = self._func(targets=self.args.targets, props=self._props())
|
||||
plots_data = self._func(
|
||||
targets=self.args.targets, props=self._props()
|
||||
)
|
||||
|
||||
if not plots_data:
|
||||
ui.error_write(
|
||||
"No plots were loaded, "
|
||||
"visualization file will not be created."
|
||||
)
|
||||
|
||||
if self.args.show_vega:
|
||||
target = self.args.targets[0]
|
||||
ui.write(plots[target])
|
||||
plot_json = find_vega(self.repo, plots_data, target)
|
||||
if plot_json:
|
||||
ui.write(plot_json)
|
||||
return 0
|
||||
|
||||
except DvcException:
|
||||
logger.exception("")
|
||||
return 1
|
||||
|
||||
if plots:
|
||||
rel: str = self.args.out or "plots.html"
|
||||
rel: str = self.args.out or "dvc_plots"
|
||||
path: Path = (Path.cwd() / rel).resolve()
|
||||
self.repo.plots.write_html(
|
||||
path, plots=plots, html_template_path=self.args.html_template
|
||||
index_path = render(
|
||||
self.repo,
|
||||
plots_data,
|
||||
path=path,
|
||||
html_template_path=self.args.html_template,
|
||||
)
|
||||
|
||||
assert (
|
||||
path.is_absolute()
|
||||
) # as_uri throws ValueError if not absolute
|
||||
url = path.as_uri()
|
||||
assert index_path.is_absolute()
|
||||
url = index_path.as_uri()
|
||||
ui.write(url)
|
||||
|
||||
if self.args.open:
|
||||
import webbrowser
|
||||
|
||||
opened = webbrowser.open(rel)
|
||||
opened = webbrowser.open(index_path)
|
||||
if not opened:
|
||||
ui.error_write(
|
||||
"Failed to open. Please try opening it manually."
|
||||
)
|
||||
return 1
|
||||
else:
|
||||
ui.error_write(
|
||||
"No plots were loaded, visualization file will not be created."
|
||||
)
|
||||
return 0
|
||||
return 0
|
||||
|
||||
except DvcException:
|
||||
logger.exception("")
|
||||
return 1
|
||||
|
||||
|
||||
class CmdPlotsShow(CmdPlots):
|
||||
|
||||
+4
-1
@@ -168,7 +168,10 @@ class TabularData(MutableSequence[Sequence["CellT"]]):
|
||||
def render(self, **kwargs: Any):
|
||||
from dvc.ui import ui
|
||||
|
||||
ui.table(self, headers=self.keys(), **kwargs)
|
||||
if kwargs.pop("show_csv", False):
|
||||
ui.write(self.to_csv(), end="")
|
||||
else:
|
||||
ui.table(self, headers=self.keys(), **kwargs)
|
||||
|
||||
def as_dict(
|
||||
self, cols: Iterable[str] = None
|
||||
|
||||
+30
-13
@@ -32,6 +32,18 @@ class RemoteNotFoundError(RemoteConfigError):
|
||||
pass
|
||||
|
||||
|
||||
class MachineConfigError(ConfigError):
|
||||
pass
|
||||
|
||||
|
||||
class NoMachineError(MachineConfigError):
|
||||
pass
|
||||
|
||||
|
||||
class MachineNotFoundError(MachineConfigError):
|
||||
pass
|
||||
|
||||
|
||||
@memoize
|
||||
def get_compiled_schema():
|
||||
from voluptuous import Schema
|
||||
@@ -64,8 +76,10 @@ class Config(dict):
|
||||
APPNAME = "dvc"
|
||||
APPAUTHOR = "iterative"
|
||||
|
||||
SYSTEM_LEVELS = ("system", "global")
|
||||
REPO_LEVELS = ("repo", "local")
|
||||
# In the order they shadow each other
|
||||
LEVELS = ("system", "global", "repo", "local")
|
||||
LEVELS = SYSTEM_LEVELS + REPO_LEVELS
|
||||
|
||||
CONFIG = "config"
|
||||
CONFIG_LOCAL = "config.local"
|
||||
@@ -167,7 +181,7 @@ class Config(dict):
|
||||
conf_obj = ConfigObj(fobj)
|
||||
else:
|
||||
conf_obj = ConfigObj()
|
||||
return _parse_remotes(_lower_keys(conf_obj.dict()))
|
||||
return _parse_named(_lower_keys(conf_obj.dict()))
|
||||
|
||||
def _save_config(self, level, conf_dict):
|
||||
from configobj import ConfigObj
|
||||
@@ -179,7 +193,7 @@ class Config(dict):
|
||||
|
||||
fs.makedirs(os.path.dirname(filename))
|
||||
|
||||
config = ConfigObj(_pack_remotes(conf_dict))
|
||||
config = ConfigObj(_pack_named(conf_dict))
|
||||
with fs.open(filename, "wb") as fobj:
|
||||
config.write(fobj)
|
||||
config.filename = filename
|
||||
@@ -251,6 +265,7 @@ class Config(dict):
|
||||
"key_path": func,
|
||||
}
|
||||
},
|
||||
"machine": {str: {"startup_script": func}},
|
||||
}
|
||||
return Schema(dirs_schema, extra=ALLOW_EXTRA)(conf)
|
||||
|
||||
@@ -273,7 +288,7 @@ class Config(dict):
|
||||
def edit(self, level=None, validate=True):
|
||||
# NOTE: we write to repo config by default, same as git config
|
||||
level = level or "repo"
|
||||
if level in {"repo", "local"} and self.dvc_dir is None:
|
||||
if self.dvc_dir is None and level in self.REPO_LEVELS:
|
||||
raise ConfigError("Not inside a DVC repo")
|
||||
|
||||
conf = self.load_one(level)
|
||||
@@ -300,27 +315,29 @@ class Config(dict):
|
||||
raise ConfigError(str(exc)) from None
|
||||
|
||||
|
||||
def _parse_remotes(conf):
|
||||
result = {"remote": {}}
|
||||
def _parse_named(conf):
|
||||
result = {"remote": {}, "machine": {}}
|
||||
|
||||
for section, val in conf.items():
|
||||
name = re_find(r'^\s*remote\s*"(.*)"\s*$', section)
|
||||
if name:
|
||||
result["remote"][name] = val
|
||||
match = re_find(r'^\s*(remote|machine)\s*"(.*)"\s*$', section)
|
||||
if match:
|
||||
key, name = match
|
||||
result[key][name] = val
|
||||
else:
|
||||
result[section] = val
|
||||
|
||||
return result
|
||||
|
||||
|
||||
def _pack_remotes(conf):
|
||||
def _pack_named(conf):
|
||||
# Drop empty sections
|
||||
result = compact(conf)
|
||||
|
||||
# Transform remote.name -> 'remote "name"'
|
||||
for name, val in conf["remote"].items():
|
||||
result[f'remote "{name}"'] = val
|
||||
result.pop("remote", None)
|
||||
for key in ("remote", "machine"):
|
||||
for name, val in conf[key].items():
|
||||
result[f'{key} "{name}"'] = val
|
||||
result.pop(key, None)
|
||||
|
||||
return result
|
||||
|
||||
|
||||
+21
-1
@@ -118,6 +118,7 @@ SCHEMA = {
|
||||
Optional("autostage", default=False): Bool,
|
||||
Optional("experiments"): Bool, # obsoleted
|
||||
Optional("check_update", default=True): Bool,
|
||||
"machine": Lower,
|
||||
},
|
||||
"cache": {
|
||||
"local": str,
|
||||
@@ -154,6 +155,7 @@ SCHEMA = {
|
||||
"grant_read_acp": str,
|
||||
"grant_write_acp": str,
|
||||
"grant_full_control": str,
|
||||
"cache_regions": bool,
|
||||
**REMOTE_COMMON,
|
||||
},
|
||||
"gs": {
|
||||
@@ -224,10 +226,28 @@ SCHEMA = {
|
||||
"row_limit": All(Coerce(int), Range(1)), # obsoleted
|
||||
"row_cleanup_quota": All(Coerce(int), Range(0, 100)), # obsoleted
|
||||
},
|
||||
"machine": {
|
||||
str: {
|
||||
"cloud": All(Lower, Choices("aws", "azure")),
|
||||
"region": All(
|
||||
Lower, Choices("us-west", "us-east", "eu-west", "eu-north")
|
||||
),
|
||||
"image": str,
|
||||
"name": str,
|
||||
"spot": Bool,
|
||||
"spot_price": Coerce(float),
|
||||
"instance_hdd_size": Coerce(int),
|
||||
"instance_type": Lower,
|
||||
"instance_gpu": Lower,
|
||||
"ssh_private": str,
|
||||
"startup_script": str,
|
||||
},
|
||||
},
|
||||
# section for experimental features
|
||||
"feature": {
|
||||
Optional("machine", default=False): Bool,
|
||||
# enabled by default. It's of no use, kept for backward compatibility.
|
||||
Optional("parametrization", default=True): Bool
|
||||
Optional("parametrization", default=True): Bool,
|
||||
},
|
||||
"plots": {"html_template": str},
|
||||
}
|
||||
|
||||
+14
-9
@@ -12,29 +12,34 @@ from dvc.utils import fix_env, is_binary
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
CREATE_NEW_PROCESS_GROUP = 0x00000200
|
||||
DETACHED_PROCESS = 0x00000008
|
||||
CREATE_NO_WINDOW = 0x08000000 # only available since Python 3.7 in subprocess.
|
||||
|
||||
|
||||
def _popen(cmd, **kwargs):
|
||||
prefix = [sys.executable]
|
||||
if not is_binary():
|
||||
prefix += [sys.argv[0]]
|
||||
|
||||
main_entrypoint = os.path.join(
|
||||
os.path.abspath(os.path.dirname(__file__)), "__main__.py"
|
||||
)
|
||||
prefix += [main_entrypoint]
|
||||
return Popen(prefix + cmd, close_fds=True, shell=False, **kwargs)
|
||||
|
||||
|
||||
def _spawn_windows(cmd, env):
|
||||
from subprocess import STARTF_USESHOWWINDOW, STARTUPINFO
|
||||
from subprocess import (
|
||||
CREATE_NEW_PROCESS_GROUP,
|
||||
STARTF_USESHOWWINDOW,
|
||||
STARTUPINFO,
|
||||
)
|
||||
|
||||
creationflags = CREATE_NEW_PROCESS_GROUP | DETACHED_PROCESS
|
||||
# https://stackoverflow.com/a/7006424
|
||||
# https://bugs.python.org/issue41619
|
||||
creationflags = CREATE_NEW_PROCESS_GROUP | CREATE_NO_WINDOW
|
||||
|
||||
startupinfo = STARTUPINFO()
|
||||
startupinfo.dwFlags |= STARTF_USESHOWWINDOW
|
||||
|
||||
_popen(
|
||||
cmd, env=env, creationflags=creationflags, startupinfo=startupinfo
|
||||
).communicate()
|
||||
_popen(cmd, env=env, creationflags=creationflags, startupinfo=startupinfo)
|
||||
|
||||
|
||||
def _spawn_posix(cmd, env):
|
||||
|
||||
@@ -2,6 +2,7 @@ import posixpath
|
||||
from urllib.parse import urlparse
|
||||
|
||||
from ..scheme import Schemes
|
||||
from . import utils # noqa: F401
|
||||
from .azure import AzureFileSystem
|
||||
from .gdrive import GDriveFileSystem
|
||||
from .gs import GSFileSystem
|
||||
|
||||
+2
-2
@@ -11,7 +11,7 @@ from dvc.path_info import CloudURLInfo
|
||||
from dvc.scheme import Schemes
|
||||
from dvc.utils import format_link
|
||||
|
||||
from .fsspec_wrapper import ObjectFSWrapper
|
||||
from .fsspec_wrapper import CallbackMixin, ObjectFSWrapper
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
_DEFAULT_CREDS_STEPS = (
|
||||
@@ -39,7 +39,7 @@ def _az_config():
|
||||
|
||||
|
||||
# pylint:disable=abstract-method
|
||||
class AzureFileSystem(ObjectFSWrapper):
|
||||
class AzureFileSystem(CallbackMixin, ObjectFSWrapper):
|
||||
scheme = Schemes.AZURE
|
||||
PATH_CLS = CloudURLInfo
|
||||
PARAM_CHECKSUM = "etag"
|
||||
|
||||
+130
-86
@@ -1,15 +1,20 @@
|
||||
import contextlib
|
||||
import logging
|
||||
import os
|
||||
from concurrent.futures import ThreadPoolExecutor, as_completed
|
||||
from functools import partial, partialmethod
|
||||
from functools import partialmethod
|
||||
from multiprocessing import cpu_count
|
||||
from typing import Any, ClassVar, Dict, FrozenSet, Optional
|
||||
|
||||
from funcy import cached_property
|
||||
from tqdm.utils import CallbackIOWrapper
|
||||
|
||||
from dvc.exceptions import DvcException
|
||||
from dvc.path_info import URLInfo
|
||||
from dvc.progress import Tqdm
|
||||
from dvc.progress import DEFAULT_CALLBACK, FsspecCallback
|
||||
from dvc.ui import ui
|
||||
from dvc.utils import tmp_fname
|
||||
from dvc.utils.fs import makedirs, move
|
||||
from dvc.utils.http import open_url
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
@@ -125,13 +130,10 @@ class BaseFileSystem:
|
||||
f"dependencies: {missing}. {hint}"
|
||||
)
|
||||
|
||||
def open(self, path_info, mode: str = "r", encoding: str = None, **kwargs):
|
||||
if hasattr(self, "_generate_download_url"):
|
||||
# pylint:disable=no-member
|
||||
func = self._generate_download_url # type: ignore[attr-defined]
|
||||
get_url = partial(func, path_info)
|
||||
return open_url(get_url, mode=mode, encoding=encoding, **kwargs)
|
||||
def checksum(self, path_info) -> str:
|
||||
raise NotImplementedError
|
||||
|
||||
def open(self, path_info, mode: str = "r", encoding: str = None, **kwargs):
|
||||
raise RemoteActionNotImplemented("open", self.scheme)
|
||||
|
||||
def exists(self, path_info) -> bool:
|
||||
@@ -221,43 +223,64 @@ class BaseFileSystem:
|
||||
return False
|
||||
return hash_.endswith(cls.CHECKSUM_DIR_SUFFIX)
|
||||
|
||||
def upload(self, from_info, to_info, name=None, no_progress_bar=False):
|
||||
if not hasattr(self, "_upload"):
|
||||
raise RemoteActionNotImplemented("upload", self.scheme)
|
||||
@cached_property
|
||||
def _local_fs(self):
|
||||
from dvc.fs import LocalFileSystem
|
||||
|
||||
return LocalFileSystem()
|
||||
|
||||
def upload(
|
||||
self,
|
||||
from_info,
|
||||
to_info,
|
||||
total=None,
|
||||
desc=None,
|
||||
callback=None,
|
||||
no_progress_bar=False,
|
||||
**pbar_args,
|
||||
):
|
||||
is_file_obj = hasattr(from_info, "read")
|
||||
method = "upload_fobj" if is_file_obj else "put_file"
|
||||
if not hasattr(self, method):
|
||||
raise RemoteActionNotImplemented(method, self.scheme)
|
||||
|
||||
if to_info.scheme != self.scheme:
|
||||
raise NotImplementedError
|
||||
|
||||
if from_info.scheme != "local":
|
||||
raise NotImplementedError
|
||||
if not is_file_obj:
|
||||
desc = desc or from_info.name
|
||||
|
||||
logger.debug("Uploading '%s' to '%s'", from_info, to_info)
|
||||
stack = contextlib.ExitStack()
|
||||
if not callback:
|
||||
pbar = ui.progress(
|
||||
desc=desc,
|
||||
disable=no_progress_bar,
|
||||
bytes=True,
|
||||
total=total or -1,
|
||||
**pbar_args,
|
||||
)
|
||||
stack.enter_context(pbar)
|
||||
callback = pbar.as_callback(self._local_fs, from_info)
|
||||
if total:
|
||||
callback.set_size(total)
|
||||
|
||||
name = name or from_info.name
|
||||
with stack:
|
||||
if is_file_obj:
|
||||
wrapped = CallbackIOWrapper(
|
||||
callback.relative_update, from_info
|
||||
)
|
||||
# `size` is used to provide hints to the WebdavFileSystem
|
||||
# for legacy servers.
|
||||
# pylint: disable=no-member
|
||||
return self.upload_fobj(wrapped, to_info, size=total)
|
||||
|
||||
self._upload( # noqa, pylint: disable=no-member
|
||||
from_info.fspath,
|
||||
to_info,
|
||||
name=name,
|
||||
no_progress_bar=no_progress_bar,
|
||||
)
|
||||
if from_info.scheme != "local":
|
||||
raise NotImplementedError
|
||||
|
||||
def upload_fobj(
|
||||
self, fobj, to_info, no_progress_bar=False, size=None, **pbar_args
|
||||
):
|
||||
if not hasattr(self, "_upload_fobj"):
|
||||
raise RemoteActionNotImplemented("upload_fobj", self.scheme)
|
||||
|
||||
with Tqdm.wrapattr(
|
||||
fobj,
|
||||
"read",
|
||||
disable=no_progress_bar,
|
||||
bytes=True,
|
||||
total=size,
|
||||
**pbar_args,
|
||||
) as wrapped:
|
||||
self._upload_fobj( # pylint: disable=no-member
|
||||
wrapped, to_info, size=size
|
||||
logger.debug("Uploading '%s' to '%s'", from_info, to_info)
|
||||
# pylint: disable=no-member
|
||||
return self.put_file(
|
||||
os.fspath(from_info), to_info, callback=callback
|
||||
)
|
||||
|
||||
def download(
|
||||
@@ -265,84 +288,105 @@ class BaseFileSystem:
|
||||
from_info,
|
||||
to_info,
|
||||
name=None,
|
||||
callback=None,
|
||||
no_progress_bar=False,
|
||||
jobs=None,
|
||||
_only_file=False,
|
||||
**kwargs,
|
||||
):
|
||||
if not hasattr(self, "_download"):
|
||||
raise RemoteActionNotImplemented("download", self.scheme)
|
||||
if not hasattr(self, "get_file"):
|
||||
raise RemoteActionNotImplemented("get_file", self.scheme)
|
||||
|
||||
if from_info.scheme != self.scheme:
|
||||
raise NotImplementedError
|
||||
|
||||
if to_info.scheme == self.scheme != "local":
|
||||
self.copy(from_info, to_info)
|
||||
return 0
|
||||
|
||||
if to_info.scheme != "local":
|
||||
raise NotImplementedError
|
||||
|
||||
if not _only_file and self.isdir(from_info):
|
||||
return self._download_dir(
|
||||
from_info, to_info, name, no_progress_bar, jobs, **kwargs
|
||||
download_dir = not _only_file and self.isdir(from_info)
|
||||
|
||||
desc = name or to_info.name
|
||||
stack = contextlib.ExitStack()
|
||||
if not callback:
|
||||
pbar_kwargs = {"unit": "Files"} if download_dir else {}
|
||||
pbar = ui.progress(
|
||||
total=-1,
|
||||
desc="Downloading directory" if download_dir else desc,
|
||||
bytes=not download_dir,
|
||||
disable=no_progress_bar,
|
||||
**pbar_kwargs,
|
||||
)
|
||||
return self._download_file(from_info, to_info, name, no_progress_bar)
|
||||
stack.enter_context(pbar)
|
||||
callback = pbar.as_callback(self, from_info)
|
||||
|
||||
with stack:
|
||||
if download_dir:
|
||||
return self._download_dir(
|
||||
from_info, to_info, callback=callback, jobs=jobs, **kwargs
|
||||
)
|
||||
return self._download_file(from_info, to_info, callback=callback)
|
||||
|
||||
download_file = partialmethod(download, _only_file=True)
|
||||
|
||||
def _download_dir(
|
||||
self, from_info, to_info, name, no_progress_bar, jobs, **kwargs
|
||||
self,
|
||||
from_info,
|
||||
to_info,
|
||||
callback=DEFAULT_CALLBACK,
|
||||
jobs=None,
|
||||
**kwargs,
|
||||
):
|
||||
from_infos = list(self.walk_files(from_info, **kwargs))
|
||||
if not from_infos:
|
||||
makedirs(to_info, exist_ok=True)
|
||||
return None
|
||||
|
||||
to_infos = (
|
||||
to_info / info.relative_to(from_info) for info in from_infos
|
||||
)
|
||||
callback.set_size(len(from_infos))
|
||||
|
||||
with Tqdm(
|
||||
total=len(from_infos),
|
||||
desc="Downloading directory",
|
||||
unit="Files",
|
||||
disable=no_progress_bar,
|
||||
) as pbar:
|
||||
download_files = pbar.wrap_fn(
|
||||
partial(self._download_file, name=name, no_progress_bar=True)
|
||||
)
|
||||
max_workers = jobs or self.jobs
|
||||
with ThreadPoolExecutor(max_workers=max_workers) as executor:
|
||||
futures = [
|
||||
executor.submit(download_files, from_info, to_info)
|
||||
for from_info, to_info in zip(from_infos, to_infos)
|
||||
]
|
||||
download_files = FsspecCallback.wrap_fn(callback, self._download_file)
|
||||
max_workers = jobs or self.jobs
|
||||
with ThreadPoolExecutor(max_workers=max_workers) as executor:
|
||||
futures = [
|
||||
executor.submit(download_files, from_info, to_info)
|
||||
for from_info, to_info in zip(from_infos, to_infos)
|
||||
]
|
||||
|
||||
# NOTE: unlike pulling/fetching cache, where we need to
|
||||
# download everything we can, not raising an error here might
|
||||
# turn very ugly, as the user might think that he has
|
||||
# downloaded a complete directory, while having a partial one,
|
||||
# which might cause unexpected results in his pipeline.
|
||||
for future in as_completed(futures):
|
||||
# NOTE: executor won't let us raise until all futures that
|
||||
# it has are finished, so we need to cancel them ourselves
|
||||
# before re-raising.
|
||||
exc = future.exception()
|
||||
if exc:
|
||||
for entry in futures:
|
||||
entry.cancel()
|
||||
raise exc
|
||||
# NOTE: unlike pulling/fetching cache, where we need to
|
||||
# download everything we can, not raising an error here might
|
||||
# turn very ugly, as the user might think that he has
|
||||
# downloaded a complete directory, while having a partial one,
|
||||
# which might cause unexpected results in his pipeline.
|
||||
for future in as_completed(futures):
|
||||
# NOTE: executor won't let us raise until all futures that
|
||||
# it has are finished, so we need to cancel them ourselves
|
||||
# before re-raising.
|
||||
exc = future.exception()
|
||||
if exc:
|
||||
for entry in futures:
|
||||
entry.cancel()
|
||||
raise exc
|
||||
|
||||
def _download_file(self, from_info, to_info, name, no_progress_bar):
|
||||
def _download_file(
|
||||
self,
|
||||
from_info,
|
||||
to_info,
|
||||
callback=DEFAULT_CALLBACK,
|
||||
):
|
||||
makedirs(to_info.parent, exist_ok=True)
|
||||
|
||||
logger.debug("Downloading '%s' to '%s'", from_info, to_info)
|
||||
name = name or to_info.name
|
||||
|
||||
tmp_file = tmp_fname(to_info)
|
||||
|
||||
self._download( # noqa, pylint: disable=no-member
|
||||
from_info, tmp_file, name=name, no_progress_bar=no_progress_bar
|
||||
)
|
||||
logger.debug("Downloading '%s' to '%s'", from_info, to_info)
|
||||
try:
|
||||
# noqa, pylint: disable=no-member
|
||||
self.get_file(from_info, tmp_file, callback=callback)
|
||||
except Exception: # pylint: disable=broad-except
|
||||
# do we need to rollback makedirs for previously not-existing
|
||||
# directories?
|
||||
with contextlib.suppress(FileNotFoundError):
|
||||
os.unlink(tmp_file)
|
||||
raise
|
||||
|
||||
move(tmp_file, to_info)
|
||||
|
||||
+13
-3
@@ -6,6 +6,7 @@ from dvc.exceptions import OutputNotFoundError
|
||||
from dvc.path_info import PathInfo
|
||||
from dvc.utils import relpath
|
||||
|
||||
from ..progress import DEFAULT_CALLBACK
|
||||
from ._metadata import Metadata
|
||||
from .base import BaseFileSystem
|
||||
|
||||
@@ -256,8 +257,17 @@ class DvcFileSystem(BaseFileSystem): # pylint:disable=abstract-method
|
||||
|
||||
return ret
|
||||
|
||||
def _download(self, from_info, to_file, **kwargs):
|
||||
def get_file(
|
||||
self, from_info, to_file, callback=DEFAULT_CALLBACK, **kwargs
|
||||
):
|
||||
fs, path = self._get_fs_path(from_info)
|
||||
fs._download( # pylint: disable=protected-access
|
||||
path, to_file, **kwargs
|
||||
fs.get_file( # pylint: disable=protected-access
|
||||
path, to_file, callback=callback, **kwargs
|
||||
)
|
||||
|
||||
def checksum(self, path_info):
|
||||
info = self.info(path_info)
|
||||
md5 = info.get("md5")
|
||||
if md5:
|
||||
return md5
|
||||
raise NotImplementedError
|
||||
|
||||
+72
-65
@@ -3,8 +3,9 @@ import shutil
|
||||
from functools import lru_cache
|
||||
|
||||
from funcy import cached_property
|
||||
from tqdm.utils import CallbackIOWrapper
|
||||
|
||||
from dvc.progress import Tqdm
|
||||
from dvc.progress import DEFAULT_CALLBACK
|
||||
|
||||
from .base import BaseFileSystem
|
||||
from .local import LocalFileSystem
|
||||
@@ -85,6 +86,9 @@ class FSSpecWrapper(BaseFileSystem):
|
||||
): # pylint: disable=arguments-differ
|
||||
return self.fs.open(self._with_bucket(path_info), mode=mode)
|
||||
|
||||
def checksum(self, path_info):
|
||||
return self.fs.checksum(self._with_bucket(path_info))
|
||||
|
||||
def copy(self, from_info, to_info):
|
||||
self.makedirs(to_info.parent)
|
||||
self.fs.copy(self._with_bucket(from_info), self._with_bucket(to_info))
|
||||
@@ -127,43 +131,26 @@ class FSSpecWrapper(BaseFileSystem):
|
||||
self._with_bucket(path_info), exist_ok=kwargs.pop("exist_ok", True)
|
||||
)
|
||||
|
||||
def _upload_fobj(self, fobj, to_info, size=None):
|
||||
def put_file(
|
||||
self, from_file, to_info, callback=DEFAULT_CALLBACK, **kwargs
|
||||
):
|
||||
self.fs.put_file(
|
||||
from_file, self._with_bucket(to_info), callback=callback, **kwargs
|
||||
)
|
||||
self.fs.invalidate_cache(self._with_bucket(to_info.parent))
|
||||
|
||||
def get_file(
|
||||
self, from_info, to_info, callback=DEFAULT_CALLBACK, **kwargs
|
||||
):
|
||||
self.fs.get_file(
|
||||
self._with_bucket(from_info), to_info, callback=callback, **kwargs
|
||||
)
|
||||
|
||||
def upload_fobj(self, fobj, to_info, **kwargs):
|
||||
self.makedirs(to_info.parent)
|
||||
with self.open(to_info, "wb") as fdest:
|
||||
shutil.copyfileobj(fobj, fdest, length=fdest.blocksize)
|
||||
|
||||
def _upload(
|
||||
self, from_file, to_info, name=None, no_progress_bar=False, **kwargs
|
||||
):
|
||||
self.makedirs(to_info.parent)
|
||||
size = os.path.getsize(from_file)
|
||||
with open(from_file, "rb") as fobj:
|
||||
self.upload_fobj(
|
||||
fobj,
|
||||
to_info,
|
||||
size=size,
|
||||
desc=name,
|
||||
no_progress_bar=no_progress_bar,
|
||||
)
|
||||
self.fs.invalidate_cache(self._with_bucket(to_info.parent))
|
||||
|
||||
def _download(
|
||||
self, from_info, to_file, name=None, no_progress_bar=False, **pbar_args
|
||||
):
|
||||
total = self.getsize(self._with_bucket(from_info))
|
||||
with self.open(from_info, "rb") as fobj:
|
||||
with Tqdm.wrapattr(
|
||||
fobj,
|
||||
"read",
|
||||
desc=name,
|
||||
disable=no_progress_bar,
|
||||
bytes=True,
|
||||
total=total,
|
||||
**pbar_args,
|
||||
) as wrapped:
|
||||
with open(to_file, "wb") as fdest:
|
||||
shutil.copyfileobj(wrapped, fdest, length=fobj.blocksize)
|
||||
|
||||
|
||||
# pylint: disable=abstract-method
|
||||
class ObjectFSWrapper(FSSpecWrapper):
|
||||
@@ -230,42 +217,62 @@ class ObjectFSWrapper(FSSpecWrapper):
|
||||
yield from self._strip_buckets(files, detail=detail)
|
||||
|
||||
|
||||
# pylint: disable=arguments-differ
|
||||
class NoDirectoriesMixin:
|
||||
def isdir(self, *args, **kwargs):
|
||||
return False
|
||||
|
||||
def isfile(self, *args, **kwargs):
|
||||
return True
|
||||
|
||||
def find(self, *args, **kwargs):
|
||||
raise NotImplementedError
|
||||
|
||||
def walk(self, *args, **kwargs):
|
||||
raise NotImplementedError
|
||||
|
||||
def walk_files(self, *args, **kwargs):
|
||||
raise NotImplementedError
|
||||
|
||||
def ls(self, *args, **kwargs):
|
||||
raise NotImplementedError
|
||||
|
||||
|
||||
_LOCAL_FS = LocalFileSystem()
|
||||
|
||||
|
||||
class CallbackMixin:
|
||||
"""Use the native ``get_file()``/``put_file()`` APIs
|
||||
if the target filesystem supports callbacks."""
|
||||
"""Provides callback support for the filesystem that don't support yet."""
|
||||
|
||||
def _upload(
|
||||
self, from_file, to_info, name=None, no_progress_bar=False, **pbar_args
|
||||
def put_file(
|
||||
self,
|
||||
from_file,
|
||||
to_info,
|
||||
callback=DEFAULT_CALLBACK,
|
||||
**kwargs,
|
||||
):
|
||||
with Tqdm(
|
||||
desc=name,
|
||||
disable=no_progress_bar,
|
||||
bytes=True,
|
||||
total=-1,
|
||||
**pbar_args,
|
||||
) as pbar:
|
||||
self.fs.put_file(
|
||||
os.fspath(from_file),
|
||||
self._with_bucket(to_info),
|
||||
callback=pbar.as_callback(_LOCAL_FS, from_file),
|
||||
)
|
||||
self.fs.invalidate_cache(self._with_bucket(to_info.parent))
|
||||
"""Add compatibility support for Callback."""
|
||||
# pylint: disable=protected-access
|
||||
self.makedirs(to_info.parent)
|
||||
size = os.path.getsize(from_file)
|
||||
with open(from_file, "rb") as fobj:
|
||||
callback.set_size(size)
|
||||
wrapped = CallbackIOWrapper(callback.relative_update, fobj)
|
||||
self.upload_fobj(wrapped, to_info)
|
||||
self.fs.invalidate_cache(self._with_bucket(to_info.parent))
|
||||
|
||||
def _download(
|
||||
self, from_info, to_file, name=None, no_progress_bar=False, **pbar_args
|
||||
def get_file(
|
||||
self,
|
||||
from_info,
|
||||
to_info,
|
||||
callback=DEFAULT_CALLBACK,
|
||||
**kwargs,
|
||||
):
|
||||
with Tqdm(
|
||||
desc=name,
|
||||
disable=no_progress_bar,
|
||||
bytes=True,
|
||||
total=-1,
|
||||
**pbar_args,
|
||||
) as pbar:
|
||||
self.fs.get_file(
|
||||
self._with_bucket(from_info),
|
||||
os.fspath(to_file),
|
||||
callback=pbar.as_callback(self, from_info),
|
||||
)
|
||||
# pylint: disable=protected-access
|
||||
total: int = self.getsize(from_info)
|
||||
if total:
|
||||
callback.set_size(total)
|
||||
|
||||
with self.open(from_info, "rb") as fobj, open(to_info, "wb") as fdest:
|
||||
wrapped = CallbackIOWrapper(callback.relative_update, fobj)
|
||||
shutil.copyfileobj(wrapped, fdest, length=fobj.blocksize)
|
||||
|
||||
+13
-6
@@ -12,7 +12,7 @@ from dvc.path_info import CloudURLInfo
|
||||
from dvc.scheme import Schemes
|
||||
from dvc.utils import format_link, tmp_fname
|
||||
|
||||
from .fsspec_wrapper import CallbackMixin, FSSpecWrapper
|
||||
from .fsspec_wrapper import FSSpecWrapper
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
FOLDER_MIME_TYPE = "application/vnd.google-apps.folder"
|
||||
@@ -79,9 +79,7 @@ class GDriveURLInfo(CloudURLInfo):
|
||||
self._spath = re.sub("/{2,}", "/", self._spath.rstrip("/"))
|
||||
|
||||
|
||||
class GDriveFileSystem(
|
||||
CallbackMixin, FSSpecWrapper
|
||||
): # pylint:disable=abstract-method
|
||||
class GDriveFileSystem(FSSpecWrapper): # pylint:disable=abstract-method
|
||||
scheme = Schemes.GDRIVE
|
||||
PATH_CLS = GDriveURLInfo
|
||||
PARAM_CHECKSUM = "checksum"
|
||||
@@ -298,7 +296,16 @@ class GDriveFileSystem(
|
||||
|
||||
return super()._with_bucket(path)
|
||||
|
||||
def _upload_fobj(self, fobj, to_info, size: int = None):
|
||||
def _strip_bucket(self, entry):
|
||||
try:
|
||||
bucket, path = entry.split("/", 1)
|
||||
except ValueError:
|
||||
# If there is no path attached, only returns
|
||||
# the bucket (top-level).
|
||||
bucket, path = entry, None
|
||||
return path or bucket
|
||||
|
||||
def upload_fobj(self, fobj, to_info, **kwargs):
|
||||
rpath = self._with_bucket(to_info)
|
||||
self.makedirs(os.path.dirname(rpath))
|
||||
return self.fs.upload_fobj(fobj, rpath, size=size)
|
||||
return self.fs.upload_fobj(fobj, rpath, **kwargs)
|
||||
|
||||
+18
-24
@@ -1,9 +1,11 @@
|
||||
import errno
|
||||
import os
|
||||
import stat
|
||||
|
||||
from tqdm.utils import CallbackIOWrapper
|
||||
|
||||
from dvc.utils import is_exec, relpath
|
||||
|
||||
from ..progress import DEFAULT_CALLBACK
|
||||
from .base import BaseFileSystem
|
||||
|
||||
|
||||
@@ -96,30 +98,20 @@ class GitFileSystem(BaseFileSystem): # pylint:disable=abstract-method
|
||||
if not self.exists(path_info):
|
||||
return False
|
||||
|
||||
mode = self.stat(path_info).st_mode
|
||||
mode = self.info(path_info)["mode"]
|
||||
return is_exec(mode)
|
||||
|
||||
def info(self, path_info):
|
||||
key = self._get_key(path_info)
|
||||
try:
|
||||
st = self.trie.stat(key)
|
||||
return self.trie.info(key)
|
||||
except KeyError:
|
||||
raise FileNotFoundError(
|
||||
errno.ENOENT, os.strerror(errno.ENOENT), path_info
|
||||
)
|
||||
return {
|
||||
"size": st.st_size,
|
||||
"type": "directory" if stat.S_ISDIR(st.st_mode) else "file",
|
||||
}
|
||||
|
||||
def stat(self, path):
|
||||
key = self._get_key(path)
|
||||
try:
|
||||
return self.trie.stat(key)
|
||||
except KeyError:
|
||||
raise FileNotFoundError(
|
||||
errno.ENOENT, os.strerror(errno.ENOENT), path
|
||||
)
|
||||
def checksum(self, path_info):
|
||||
return self.info(path_info)["sha"]
|
||||
|
||||
def walk_files(self, path_info, **kwargs):
|
||||
for root, _, files in self.walk(path_info, **kwargs):
|
||||
@@ -127,16 +119,18 @@ class GitFileSystem(BaseFileSystem): # pylint:disable=abstract-method
|
||||
# NOTE: os.path.join is ~5.5 times slower
|
||||
yield f"{root}{os.sep}{file}"
|
||||
|
||||
def _download(
|
||||
self, from_info, to_file, name=None, no_progress_bar=False, **kwargs
|
||||
def get_file(
|
||||
self, from_info, to_file, callback=DEFAULT_CALLBACK, **kwargs
|
||||
):
|
||||
import shutil
|
||||
|
||||
from dvc.progress import Tqdm
|
||||
total = self.getsize(from_info)
|
||||
if total:
|
||||
callback.set_size(total)
|
||||
|
||||
with open(to_file, "wb+") as to_fobj:
|
||||
with Tqdm.wrapattr(
|
||||
to_fobj, "write", desc=name, disable=no_progress_bar
|
||||
) as wrapped:
|
||||
with self.open(from_info, "rb", **kwargs) as from_fobj:
|
||||
shutil.copyfileobj(from_fobj, wrapped)
|
||||
with self.open(from_info, "rb", **kwargs) as from_fobj:
|
||||
with open(to_file, "wb+") as to_fobj:
|
||||
wrapped = CallbackIOWrapper(
|
||||
callback.relative_update, from_fobj
|
||||
)
|
||||
shutil.copyfileobj(wrapped, to_fobj)
|
||||
|
||||
+4
-4
@@ -6,11 +6,11 @@ from funcy import cached_property, wrap_prop
|
||||
from dvc.path_info import CloudURLInfo
|
||||
from dvc.scheme import Schemes
|
||||
|
||||
from .fsspec_wrapper import ObjectFSWrapper
|
||||
|
||||
|
||||
# pylint:disable=abstract-method
|
||||
class GSFileSystem(ObjectFSWrapper):
|
||||
from .fsspec_wrapper import CallbackMixin, ObjectFSWrapper
|
||||
|
||||
|
||||
class GSFileSystem(CallbackMixin, ObjectFSWrapper):
|
||||
scheme = Schemes.GS
|
||||
PATH_CLS = CloudURLInfo
|
||||
REQUIRES = {"gcsfs": "gcsfs"}
|
||||
|
||||
+26
-27
@@ -8,8 +8,10 @@ import subprocess
|
||||
from collections import deque
|
||||
from contextlib import closing, contextmanager
|
||||
|
||||
from tqdm.utils import CallbackIOWrapper
|
||||
|
||||
from dvc.hash_info import HashInfo
|
||||
from dvc.progress import Tqdm
|
||||
from dvc.progress import DEFAULT_CALLBACK
|
||||
from dvc.scheme import Schemes
|
||||
from dvc.utils import fix_env, tmp_fname
|
||||
|
||||
@@ -65,6 +67,8 @@ class HDFSFileSystem(BaseFileSystem):
|
||||
PARAM_CHECKSUM = "checksum"
|
||||
TRAVERSE_PREFIX_LEN = 2
|
||||
|
||||
BLOCK_SIZE = 2 ** 26 # 128MB
|
||||
|
||||
def __init__(self, **config):
|
||||
super().__init__(**config)
|
||||
|
||||
@@ -242,42 +246,37 @@ class HDFSFileSystem(BaseFileSystem):
|
||||
size=self.getsize(path_info),
|
||||
)
|
||||
|
||||
def _upload_fobj(self, fobj, to_info, **kwargs):
|
||||
def upload_fobj(self, fobj, to_info, **kwargs):
|
||||
with self.hdfs(to_info) as hdfs:
|
||||
with hdfs.open_output_stream(to_info.path) as fdest:
|
||||
shutil.copyfileobj(fobj, fdest)
|
||||
shutil.copyfileobj(fobj, fdest, self.BLOCK_SIZE)
|
||||
|
||||
def _upload(
|
||||
self, from_file, to_info, name=None, no_progress_bar=False, **_kwargs
|
||||
def put_file(
|
||||
self, from_file, to_info, callback=DEFAULT_CALLBACK, **kwargs
|
||||
):
|
||||
with self.hdfs(to_info) as hdfs:
|
||||
hdfs.create_dir(to_info.parent.path)
|
||||
|
||||
tmp_file = tmp_fname(to_info.path)
|
||||
total = os.path.getsize(from_file)
|
||||
total: int = os.path.getsize(from_file)
|
||||
callback.set_size(total)
|
||||
|
||||
with open(from_file, "rb") as fobj:
|
||||
with Tqdm.wrapattr(
|
||||
fobj,
|
||||
"read",
|
||||
desc=name,
|
||||
total=total,
|
||||
disable=no_progress_bar,
|
||||
) as wrapped:
|
||||
with hdfs.open_output_stream(tmp_file) as sobj:
|
||||
sobj.write(wrapped.read())
|
||||
wrapped = CallbackIOWrapper(callback.relative_update, fobj)
|
||||
with hdfs.open_output_stream(tmp_file) as sobj:
|
||||
shutil.copyfileobj(wrapped, sobj, self.BLOCK_SIZE)
|
||||
hdfs.move(tmp_file, to_info.path)
|
||||
|
||||
def _download(
|
||||
self, from_info, to_file, name=None, no_progress_bar=False, **_kwargs
|
||||
def get_file(
|
||||
self, from_info, to_file, callback=DEFAULT_CALLBACK, **kwargs
|
||||
):
|
||||
with self.hdfs(from_info) as hdfs:
|
||||
file_info = hdfs.get_file_info(from_info.path)
|
||||
total = file_info.size
|
||||
with open(to_file, "wb+") as fobj:
|
||||
with Tqdm.wrapattr(
|
||||
fobj,
|
||||
"write",
|
||||
desc=name,
|
||||
total=total,
|
||||
disable=no_progress_bar,
|
||||
) as wrapped:
|
||||
with hdfs.open_input_stream(from_info.path) as sobj:
|
||||
wrapped.write(sobj.read())
|
||||
if total:
|
||||
callback.set_size(total)
|
||||
|
||||
with hdfs.open_input_stream(from_info.path) as sobj:
|
||||
with open(to_file, "wb+") as fobj:
|
||||
wrapped = CallbackIOWrapper(callback.relative_update, sobj)
|
||||
shutil.copyfileobj(wrapped, fobj, self.BLOCK_SIZE)
|
||||
|
||||
+87
-155
@@ -1,20 +1,12 @@
|
||||
import logging
|
||||
import os.path
|
||||
import threading
|
||||
from typing import Optional
|
||||
from urllib.parse import urlparse
|
||||
|
||||
from funcy import cached_property, memoize, wrap_prop, wrap_with
|
||||
from funcy import cached_property, memoize, wrap_with
|
||||
|
||||
from dvc import prompt
|
||||
from dvc.exceptions import DvcException, HTTPError
|
||||
from dvc.path_info import HTTPURLInfo
|
||||
from dvc.progress import Tqdm
|
||||
from dvc.scheme import Schemes
|
||||
|
||||
from .base import BaseFileSystem
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
from .fsspec_wrapper import FSSpecWrapper, NoDirectoriesMixin
|
||||
|
||||
|
||||
@wrap_with(threading.Lock())
|
||||
@@ -26,171 +18,111 @@ def ask_password(host, user):
|
||||
)
|
||||
|
||||
|
||||
class HTTPFileSystem(BaseFileSystem): # pylint:disable=abstract-method
|
||||
def make_context(ssl_verify):
|
||||
if isinstance(ssl_verify, bool) or ssl_verify is None:
|
||||
return ssl_verify
|
||||
|
||||
# If this is a path, then we will create an
|
||||
# SSL context for it, and load the given certificate.
|
||||
import ssl
|
||||
|
||||
context = ssl.create_default_context()
|
||||
context.load_verify_locations(ssl_verify)
|
||||
return context
|
||||
|
||||
|
||||
# pylint: disable=abstract-method
|
||||
class HTTPFileSystem(NoDirectoriesMixin, FSSpecWrapper):
|
||||
scheme = Schemes.HTTP
|
||||
PATH_CLS = HTTPURLInfo
|
||||
PARAM_CHECKSUM = "etag"
|
||||
PARAM_CHECKSUM = "checksum"
|
||||
REQUIRES = {"aiohttp": "aiohttp", "aiohttp-retry": "aiohttp_retry"}
|
||||
CAN_TRAVERSE = False
|
||||
REQUIRES = {"requests": "requests"}
|
||||
|
||||
SESSION_RETRIES = 5
|
||||
SESSION_BACKOFF_FACTOR = 0.1
|
||||
REQUEST_TIMEOUT = 60
|
||||
CHUNK_SIZE = 2 ** 16
|
||||
|
||||
def __init__(self, **config):
|
||||
super().__init__(**config)
|
||||
def _prepare_credentials(self, **config):
|
||||
import aiohttp
|
||||
from fsspec.asyn import fsspec_loop
|
||||
|
||||
self.user = config.get("user", None)
|
||||
from dvc.config import ConfigError
|
||||
|
||||
self.auth = config.get("auth", None)
|
||||
self.custom_auth_header = config.get("custom_auth_header", None)
|
||||
self.password = config.get("password", None)
|
||||
self.ask_password = config.get("ask_password", False)
|
||||
self.headers = {}
|
||||
self.ssl_verify = config.get("ssl_verify", True)
|
||||
self.method = config.get("method", "POST")
|
||||
credentials = {}
|
||||
client_kwargs = credentials.setdefault("client_kwargs", {})
|
||||
|
||||
def _auth_method(self, url):
|
||||
from requests.auth import HTTPBasicAuth, HTTPDigestAuth
|
||||
if config.get("auth"):
|
||||
user = config.get("user")
|
||||
password = config.get("password")
|
||||
custom_auth_header = config.get("custom_auth_header")
|
||||
|
||||
if self.auth:
|
||||
if self.ask_password and self.password is None:
|
||||
self.password = ask_password(urlparse(url).hostname, self.user)
|
||||
if self.auth == "basic":
|
||||
return HTTPBasicAuth(self.user, self.password)
|
||||
if self.auth == "digest":
|
||||
return HTTPDigestAuth(self.user, self.password)
|
||||
if self.auth == "custom" and self.custom_auth_header:
|
||||
self.headers.update({self.custom_auth_header: self.password})
|
||||
return None
|
||||
if password is None and config.get("ask_password"):
|
||||
password = ask_password(config.get("url"), user or "custom")
|
||||
|
||||
def _generate_download_url(self, path_info):
|
||||
return path_info.url
|
||||
auth_method = config["auth"]
|
||||
if auth_method == "basic":
|
||||
if user is None or password is None:
|
||||
raise ConfigError(
|
||||
"HTTP 'basic' authentication require both "
|
||||
"'user' and 'password'"
|
||||
)
|
||||
|
||||
@wrap_prop(threading.Lock())
|
||||
@cached_property
|
||||
def _session(self):
|
||||
import requests
|
||||
from requests.adapters import HTTPAdapter
|
||||
from urllib3.util.retry import Retry
|
||||
client_kwargs["auth"] = aiohttp.BasicAuth(user, password)
|
||||
elif auth_method == "custom":
|
||||
if custom_auth_header is None or password is None:
|
||||
raise ConfigError(
|
||||
"HTTP 'custom' authentication require both "
|
||||
"'custom_auth_header' and 'password'"
|
||||
)
|
||||
credentials["headers"] = {custom_auth_header: password}
|
||||
else:
|
||||
raise NotImplementedError(
|
||||
f"Auth method {auth_method!r} is not supported."
|
||||
)
|
||||
|
||||
session = requests.Session()
|
||||
if "ssl_verify" in config:
|
||||
with fsspec_loop():
|
||||
client_kwargs["connector"] = aiohttp.TCPConnector(
|
||||
ssl=make_context(config["ssl_verify"])
|
||||
)
|
||||
|
||||
session.verify = self.ssl_verify
|
||||
credentials["get_client"] = self.get_client
|
||||
self.upload_method = config.get("method", "POST")
|
||||
return credentials
|
||||
|
||||
retries = Retry(
|
||||
total=self.SESSION_RETRIES,
|
||||
backoff_factor=self.SESSION_BACKOFF_FACTOR,
|
||||
async def get_client(self, **kwargs):
|
||||
import aiohttp
|
||||
from aiohttp_retry import ExponentialRetry, RetryClient
|
||||
|
||||
kwargs["retry_options"] = ExponentialRetry(
|
||||
attempts=self.SESSION_RETRIES,
|
||||
factor=self.SESSION_BACKOFF_FACTOR,
|
||||
max_timeout=self.REQUEST_TIMEOUT,
|
||||
)
|
||||
|
||||
session.mount("http://", HTTPAdapter(max_retries=retries))
|
||||
session.mount("https://", HTTPAdapter(max_retries=retries))
|
||||
# The default timeout for the aiohttp is 300 seconds
|
||||
# which is too low for DVC's interactions (especially
|
||||
# on the read) when dealing with large data blobs. We
|
||||
# unlimit the total time to read, and only limit the
|
||||
# time that is spent when connecting to the remote server.
|
||||
kwargs["timeout"] = aiohttp.ClientTimeout(
|
||||
total=None,
|
||||
connect=self.REQUEST_TIMEOUT,
|
||||
sock_connect=self.REQUEST_TIMEOUT,
|
||||
sock_read=None,
|
||||
)
|
||||
|
||||
return session
|
||||
return RetryClient(**kwargs)
|
||||
|
||||
def request(self, method, url, **kwargs):
|
||||
import requests
|
||||
@cached_property
|
||||
def fs(self):
|
||||
from fsspec.implementations.http import (
|
||||
HTTPFileSystem as _HTTPFileSystem,
|
||||
)
|
||||
|
||||
kwargs.setdefault("allow_redirects", True)
|
||||
kwargs.setdefault("timeout", self.REQUEST_TIMEOUT)
|
||||
return _HTTPFileSystem(**self.fs_args)
|
||||
|
||||
try:
|
||||
res = self._session.request(
|
||||
method,
|
||||
url,
|
||||
auth=self._auth_method(url),
|
||||
headers=self.headers,
|
||||
**kwargs,
|
||||
)
|
||||
|
||||
redirect_no_location = (
|
||||
kwargs["allow_redirects"]
|
||||
and res.status_code in (301, 302)
|
||||
and "location" not in res.headers
|
||||
)
|
||||
|
||||
if redirect_no_location:
|
||||
# AWS s3 doesn't like to add a location header to its redirects
|
||||
# from https://s3.amazonaws.com/<bucket name>/* type URLs.
|
||||
# This should be treated as an error
|
||||
raise requests.exceptions.RequestException
|
||||
|
||||
return res
|
||||
|
||||
except requests.exceptions.RequestException:
|
||||
raise DvcException(f"could not perform a {method} request")
|
||||
|
||||
def _head(self, url):
|
||||
response = self.request("HEAD", url)
|
||||
if response.ok:
|
||||
return response
|
||||
|
||||
# Sometimes servers are configured to forbid HEAD requests
|
||||
# Context: https://github.com/iterative/dvc/issues/4131
|
||||
with self.request("GET", url, stream=True) as r:
|
||||
if r.ok:
|
||||
return r
|
||||
|
||||
return response
|
||||
|
||||
def exists(self, path_info) -> bool:
|
||||
res = self._head(path_info.url)
|
||||
if res.status_code == 404:
|
||||
return False
|
||||
if bool(res):
|
||||
return True
|
||||
raise HTTPError(res.status_code, res.reason)
|
||||
|
||||
def info(self, path_info):
|
||||
resp = self._head(path_info.url)
|
||||
etag = resp.headers.get("ETag") or resp.headers.get("Content-MD5")
|
||||
size = self._content_length(resp)
|
||||
return {"etag": etag, "size": size, "type": "file"}
|
||||
|
||||
def _upload_fobj(self, fobj, to_info, **kwargs):
|
||||
def chunks(fobj):
|
||||
while True:
|
||||
chunk = fobj.read(self.CHUNK_SIZE)
|
||||
if not chunk:
|
||||
break
|
||||
yield chunk
|
||||
|
||||
response = self.request(self.method, to_info.url, data=chunks(fobj))
|
||||
if response.status_code not in (200, 201):
|
||||
raise HTTPError(response.status_code, response.reason)
|
||||
|
||||
def _download(self, from_info, to_file, name=None, no_progress_bar=False):
|
||||
response = self.request("GET", from_info.url, stream=True)
|
||||
if response.status_code != 200:
|
||||
raise HTTPError(response.status_code, response.reason)
|
||||
with open(to_file, "wb") as fd:
|
||||
with Tqdm.wrapattr(
|
||||
fd,
|
||||
"write",
|
||||
total=None
|
||||
if no_progress_bar
|
||||
else self._content_length(response),
|
||||
leave=False,
|
||||
desc=from_info.url if name is None else name,
|
||||
disable=no_progress_bar,
|
||||
) as fd_wrapped:
|
||||
for chunk in response.iter_content(chunk_size=self.CHUNK_SIZE):
|
||||
fd_wrapped.write(chunk)
|
||||
|
||||
def _upload(
|
||||
self, from_file, to_info, name=None, no_progress_bar=False, **_kwargs
|
||||
):
|
||||
with open(from_file, "rb") as fobj:
|
||||
self.upload_fobj(
|
||||
fobj,
|
||||
to_info,
|
||||
size=None if no_progress_bar else os.path.getsize(from_file),
|
||||
no_progress_bar=no_progress_bar,
|
||||
desc=name or to_info.url,
|
||||
)
|
||||
|
||||
@staticmethod
|
||||
def _content_length(response) -> Optional[int]:
|
||||
res = response.headers.get("Content-Length")
|
||||
return int(res) if res else None
|
||||
def _entry_hook(self, entry):
|
||||
entry["checksum"] = entry.get("ETag") or entry.get("Content-MD5")
|
||||
return entry
|
||||
|
||||
+17
-26
@@ -1,6 +1,5 @@
|
||||
import logging
|
||||
import os
|
||||
import stat
|
||||
|
||||
from dvc.path_info import PathInfo
|
||||
from dvc.scheme import Schemes
|
||||
@@ -8,6 +7,7 @@ from dvc.system import System
|
||||
from dvc.utils import is_exec, tmp_fname
|
||||
from dvc.utils.fs import copy_fobj_to_file, copyfile, makedirs, move, remove
|
||||
|
||||
from ..progress import DEFAULT_CALLBACK
|
||||
from .base import BaseFileSystem
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
@@ -34,7 +34,12 @@ class LocalFileSystem(BaseFileSystem):
|
||||
|
||||
def exists(self, path_info) -> bool:
|
||||
assert isinstance(path_info, str) or path_info.scheme == "local"
|
||||
return self.fs.exists(path_info)
|
||||
# TODO: replace this with os.path.exists once the problem is fixed on
|
||||
# the fsspec https://github.com/intake/filesystem_spec/issues/742
|
||||
return os.path.lexists(path_info)
|
||||
|
||||
def checksum(self, path_info) -> str:
|
||||
return self.fs.checksum(path_info)
|
||||
|
||||
def isfile(self, path_info) -> bool:
|
||||
return os.path.isfile(path_info)
|
||||
@@ -83,12 +88,9 @@ class LocalFileSystem(BaseFileSystem):
|
||||
makedirs(path_info, exist_ok=kwargs.pop("exist_ok", True))
|
||||
|
||||
def isexec(self, path_info):
|
||||
mode = self.stat(path_info).st_mode
|
||||
mode = self.info(path_info)["mode"]
|
||||
return is_exec(mode)
|
||||
|
||||
def stat(self, path):
|
||||
return os.stat(path)
|
||||
|
||||
def move(self, from_info, to_info):
|
||||
if (
|
||||
isinstance(from_info, PathInfo) and from_info.scheme != "local"
|
||||
@@ -107,7 +109,7 @@ class LocalFileSystem(BaseFileSystem):
|
||||
self.remove(tmp_info)
|
||||
raise
|
||||
|
||||
def _upload_fobj(self, fobj, to_info, **kwargs):
|
||||
def upload_fobj(self, fobj, to_info, **kwargs):
|
||||
self.makedirs(to_info.parent)
|
||||
tmp_info = to_info.parent / tmp_fname("")
|
||||
try:
|
||||
@@ -154,29 +156,18 @@ class LocalFileSystem(BaseFileSystem):
|
||||
def reflink(self, from_info, to_info):
|
||||
System.reflink(from_info, to_info)
|
||||
|
||||
@staticmethod
|
||||
def info(path_info):
|
||||
st = os.stat(path_info)
|
||||
return {
|
||||
"size": st.st_size,
|
||||
"type": "directory" if stat.S_ISDIR(st.st_mode) else "file",
|
||||
}
|
||||
def info(self, path_info):
|
||||
return self.fs.info(path_info)
|
||||
|
||||
def _upload(
|
||||
self, from_file, to_info, name=None, no_progress_bar=False, **_kwargs
|
||||
def put_file(
|
||||
self, from_file, to_info, callback=DEFAULT_CALLBACK, **kwargs
|
||||
):
|
||||
makedirs(to_info.parent, exist_ok=True)
|
||||
|
||||
tmp_file = tmp_fname(to_info)
|
||||
copyfile(
|
||||
from_file, tmp_file, name=name, no_progress_bar=no_progress_bar
|
||||
)
|
||||
copyfile(from_file, tmp_file, callback=callback)
|
||||
os.replace(tmp_file, to_info)
|
||||
|
||||
@staticmethod
|
||||
def _download(
|
||||
from_info, to_file, name=None, no_progress_bar=False, **_kwargs
|
||||
def get_file(
|
||||
self, from_info, to_file, callback=DEFAULT_CALLBACK, **kwargs
|
||||
):
|
||||
copyfile(
|
||||
from_info, to_file, no_progress_bar=no_progress_bar, name=name
|
||||
)
|
||||
copyfile(from_info, to_file, callback=callback)
|
||||
|
||||
+2
-2
@@ -7,13 +7,13 @@ from funcy import cached_property, wrap_prop
|
||||
from dvc.path_info import CloudURLInfo
|
||||
from dvc.scheme import Schemes
|
||||
|
||||
from .fsspec_wrapper import CallbackMixin, ObjectFSWrapper
|
||||
from .fsspec_wrapper import ObjectFSWrapper
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
# pylint:disable=abstract-method
|
||||
class OSSFileSystem(CallbackMixin, ObjectFSWrapper):
|
||||
class OSSFileSystem(ObjectFSWrapper):
|
||||
scheme = Schemes.OSS
|
||||
PATH_CLS = CloudURLInfo
|
||||
REQUIRES = {"ossfs": "ossfs"}
|
||||
|
||||
+25
-19
@@ -1,6 +1,5 @@
|
||||
import logging
|
||||
import os
|
||||
import stat
|
||||
import threading
|
||||
from contextlib import suppress
|
||||
from itertools import takewhile
|
||||
@@ -10,6 +9,7 @@ from funcy import lfilter, wrap_with
|
||||
|
||||
from dvc.path_info import PathInfo
|
||||
|
||||
from ..progress import DEFAULT_CALLBACK
|
||||
from .base import BaseFileSystem
|
||||
from .dvc import DvcFileSystem
|
||||
|
||||
@@ -256,8 +256,8 @@ class RepoFileSystem(BaseFileSystem): # pylint:disable=abstract-method
|
||||
return False
|
||||
|
||||
try:
|
||||
st = fs.stat(path)
|
||||
return stat.S_ISDIR(st.st_mode)
|
||||
info = fs.info(path)
|
||||
return info["type"] == "directory"
|
||||
except (OSError, ValueError):
|
||||
# from CPython's os.path.isdir()
|
||||
pass
|
||||
@@ -287,8 +287,8 @@ class RepoFileSystem(BaseFileSystem): # pylint:disable=abstract-method
|
||||
return False
|
||||
|
||||
try:
|
||||
st = fs.stat(path)
|
||||
return stat.S_ISREG(st.st_mode)
|
||||
info = fs.info(path)
|
||||
return info["type"] == "file"
|
||||
except (OSError, ValueError):
|
||||
# from CPython's os.path.isfile()
|
||||
pass
|
||||
@@ -313,10 +313,6 @@ class RepoFileSystem(BaseFileSystem): # pylint:disable=abstract-method
|
||||
return dvc_fs.isexec(path_info)
|
||||
return fs.isexec(path_info)
|
||||
|
||||
def stat(self, path):
|
||||
fs, _ = self._get_fs_pair(path)
|
||||
return fs.stat(path)
|
||||
|
||||
def _dvc_walk(self, walk):
|
||||
try:
|
||||
root, dirs, files = next(walk)
|
||||
@@ -453,19 +449,21 @@ class RepoFileSystem(BaseFileSystem): # pylint:disable=abstract-method
|
||||
for fname in files:
|
||||
yield PathInfo(root) / fname
|
||||
|
||||
def _download(self, from_info, to_file, **kwargs):
|
||||
def get_file(
|
||||
self, from_info, to_file, callback=DEFAULT_CALLBACK, **kwargs
|
||||
):
|
||||
fs, dvc_fs = self._get_fs_pair(from_info)
|
||||
try:
|
||||
fs._download( # pylint: disable=protected-access
|
||||
from_info, to_file, **kwargs
|
||||
fs.get_file( # pylint: disable=protected-access
|
||||
from_info, to_file, callback=callback, **kwargs
|
||||
)
|
||||
return
|
||||
except FileNotFoundError:
|
||||
if not dvc_fs:
|
||||
raise
|
||||
|
||||
dvc_fs._download( # pylint: disable=protected-access
|
||||
from_info, to_file, **kwargs
|
||||
dvc_fs.get_file( # pylint: disable=protected-access
|
||||
from_info, to_file, callback=callback, **kwargs
|
||||
)
|
||||
|
||||
def metadata(self, path):
|
||||
@@ -478,11 +476,11 @@ class RepoFileSystem(BaseFileSystem): # pylint:disable=abstract-method
|
||||
with suppress(FileNotFoundError):
|
||||
dvc_meta = dvc_fs.metadata(path_info)
|
||||
|
||||
stat_result = None
|
||||
info_result = None
|
||||
with suppress(FileNotFoundError):
|
||||
stat_result = fs.stat(path_info)
|
||||
info_result = fs.info(path_info)
|
||||
|
||||
if not stat_result and not dvc_meta:
|
||||
if not info_result and not dvc_meta:
|
||||
raise FileNotFoundError
|
||||
|
||||
from ._metadata import Metadata
|
||||
@@ -492,13 +490,13 @@ class RepoFileSystem(BaseFileSystem): # pylint:disable=abstract-method
|
||||
repo=self._get_repo(abspath) or self._main_repo,
|
||||
)
|
||||
|
||||
isdir = bool(stat_result) and stat.S_ISDIR(stat_result.st_mode)
|
||||
isdir = bool(info_result) and info_result["type"] == "directory"
|
||||
meta.isdir = meta.isdir or isdir
|
||||
|
||||
if not dvc_meta:
|
||||
from dvc.utils import is_exec
|
||||
|
||||
meta.is_exec = bool(stat_result) and is_exec(stat_result.st_mode)
|
||||
meta.is_exec = bool(info_result) and is_exec(info_result["mode"])
|
||||
return meta
|
||||
|
||||
def info(self, path_info):
|
||||
@@ -508,3 +506,11 @@ class RepoFileSystem(BaseFileSystem): # pylint:disable=abstract-method
|
||||
return fs.info(path_info)
|
||||
except FileNotFoundError:
|
||||
return dvc_fs.info(path_info)
|
||||
|
||||
def checksum(self, path_info):
|
||||
fs, dvc_fs = self._get_fs_pair(path_info)
|
||||
|
||||
try:
|
||||
return fs.checksum(path_info)
|
||||
except FileNotFoundError:
|
||||
return dvc_fs.checksum(path_info)
|
||||
|
||||
+25
-30
@@ -6,7 +6,7 @@ from collections import defaultdict
|
||||
from funcy import cached_property, wrap_prop
|
||||
|
||||
from dvc.path_info import CloudURLInfo
|
||||
from dvc.progress import Tqdm
|
||||
from dvc.progress import DEFAULT_CALLBACK
|
||||
from dvc.scheme import Schemes
|
||||
|
||||
from .fsspec_wrapper import ObjectFSWrapper
|
||||
@@ -68,12 +68,12 @@ class BaseS3FileSystem(ObjectFSWrapper):
|
||||
self._transfer_config = None
|
||||
config_path = os.environ.get("AWS_CONFIG_FILE", _AWS_CONFIG_PATH)
|
||||
if not os.path.exists(config_path):
|
||||
return None
|
||||
return {}
|
||||
|
||||
config = load_config(config_path)
|
||||
profile_config = config["profiles"].get(profile or "default")
|
||||
if not profile_config:
|
||||
return None
|
||||
return {}
|
||||
|
||||
s3_config = profile_config.get("s3", {})
|
||||
return self._split_s3_config(s3_config)
|
||||
@@ -123,6 +123,14 @@ class BaseS3FileSystem(ObjectFSWrapper):
|
||||
if shared_creds:
|
||||
os.environ.setdefault("AWS_SHARED_CREDENTIALS_FILE", shared_creds)
|
||||
|
||||
if (
|
||||
client["region_name"] is None
|
||||
and session_config["s3"].get("region_name") is None
|
||||
and os.getenv("AWS_REGION") is None
|
||||
):
|
||||
# Enable bucket region caching
|
||||
login_info["cache_regions"] = config.get("cache_regions", True)
|
||||
|
||||
config_path = config.get("configpath")
|
||||
if config_path:
|
||||
os.environ.setdefault("AWS_CONFIG_FILE", config_path)
|
||||
@@ -196,36 +204,23 @@ class S3FileSystem(BaseS3FileSystem): # pylint:disable=abstract-method
|
||||
return bucket.Object(path_info.path)
|
||||
|
||||
@_translate_exceptions
|
||||
def _upload(
|
||||
self, from_file, to_info, name=None, no_progress_bar=False, **pbar_args
|
||||
def put_file(
|
||||
self, from_file, to_info, callback=DEFAULT_CALLBACK, **kwargs
|
||||
):
|
||||
total = os.path.getsize(from_file)
|
||||
with Tqdm(
|
||||
disable=no_progress_bar,
|
||||
total=total,
|
||||
bytes=True,
|
||||
desc=name,
|
||||
**pbar_args,
|
||||
) as pbar:
|
||||
obj = self._get_obj(to_info)
|
||||
obj.upload_file(
|
||||
from_file,
|
||||
Callback=pbar.update,
|
||||
ExtraArgs=self.fs_args.get("s3_additional_kwargs"),
|
||||
Config=self._transfer_config,
|
||||
)
|
||||
callback.set_size(os.path.getsize(from_file))
|
||||
obj = self._get_obj(to_info)
|
||||
obj.upload_file(
|
||||
from_file,
|
||||
Callback=callback.relative_update,
|
||||
ExtraArgs=self.fs_args.get("s3_additional_kwargs"),
|
||||
Config=self._transfer_config,
|
||||
)
|
||||
self.fs.invalidate_cache(self._with_bucket(to_info.parent))
|
||||
|
||||
@_translate_exceptions
|
||||
def _download(
|
||||
self, from_info, to_file, name=None, no_progress_bar=False, **pbar_args
|
||||
def get_file(
|
||||
self, from_info, to_info, callback=DEFAULT_CALLBACK, **kwargs
|
||||
):
|
||||
obj = self._get_obj(from_info)
|
||||
with Tqdm(
|
||||
disable=no_progress_bar,
|
||||
total=obj.content_length,
|
||||
bytes=True,
|
||||
desc=name,
|
||||
**pbar_args,
|
||||
) as pbar:
|
||||
obj.download_file(to_file, Callback=pbar.update)
|
||||
callback.set_size(obj.content_length)
|
||||
obj.download_file(to_info, Callback=callback.relative_update)
|
||||
|
||||
+27
-20
@@ -2,13 +2,14 @@ import getpass
|
||||
import os.path
|
||||
import threading
|
||||
|
||||
from funcy import cached_property, first, memoize, silent, wrap_prop, wrap_with
|
||||
from funcy import cached_property, memoize, silent, wrap_prop, wrap_with
|
||||
|
||||
from dvc import prompt
|
||||
from dvc.scheme import Schemes
|
||||
from dvc.utils.fs import as_atomic
|
||||
|
||||
from .fsspec_wrapper import CallbackMixin, FSSpecWrapper
|
||||
from ..progress import DEFAULT_CALLBACK
|
||||
from .fsspec_wrapper import FSSpecWrapper
|
||||
|
||||
_SSH_TIMEOUT = 60 * 30
|
||||
_SSH_CONFIG_FILE = os.path.expanduser(os.path.join("~", ".ssh", "config"))
|
||||
@@ -26,7 +27,7 @@ def ask_password(host, user, port):
|
||||
|
||||
|
||||
# pylint:disable=abstract-method
|
||||
class SSHFileSystem(CallbackMixin, FSSpecWrapper):
|
||||
class SSHFileSystem(FSSpecWrapper):
|
||||
scheme = Schemes.SSH
|
||||
REQUIRES = {"sshfs": "sshfs"}
|
||||
|
||||
@@ -66,16 +67,25 @@ class SSHFileSystem(CallbackMixin, FSSpecWrapper):
|
||||
or self.DEFAULT_PORT
|
||||
)
|
||||
|
||||
login_info["password"] = config.get("password")
|
||||
|
||||
if user_ssh_config.get("IdentityFile"):
|
||||
config.setdefault(
|
||||
"keyfile", first(user_ssh_config.get("IdentityFile"))
|
||||
if config.get("ask_password") and config.get("password") is None:
|
||||
config["password"] = ask_password(
|
||||
login_info["host"], login_info["username"], login_info["port"]
|
||||
)
|
||||
|
||||
keyfile = config.get("keyfile")
|
||||
if keyfile:
|
||||
login_info["client_keys"] = [os.path.expanduser(keyfile)]
|
||||
login_info["password"] = config.get("password")
|
||||
login_info["passphrase"] = config.get("password")
|
||||
|
||||
raw_keys = []
|
||||
if config.get("keyfile"):
|
||||
raw_keys.append(config.get("keyfile"))
|
||||
elif user_ssh_config.get("IdentityFile"):
|
||||
raw_keys.extend(user_ssh_config.get("IdentityFile"))
|
||||
|
||||
if raw_keys:
|
||||
login_info["client_keys"] = [
|
||||
os.path.expanduser(key) for key in raw_keys
|
||||
]
|
||||
|
||||
login_info["timeout"] = config.get("timeout", _SSH_TIMEOUT)
|
||||
|
||||
# These two settings fine tune the asyncssh to use the
|
||||
@@ -96,11 +106,6 @@ class SSHFileSystem(CallbackMixin, FSSpecWrapper):
|
||||
login_info["agent_forwarding"] = config.get("agent_forwarding", True)
|
||||
login_info["proxy_command"] = user_ssh_config.get("ProxyCommand")
|
||||
|
||||
if config.get("ask_password") and login_info["password"] is None:
|
||||
login_info["password"] = ask_password(
|
||||
login_info["host"], login_info["username"], login_info["port"]
|
||||
)
|
||||
|
||||
# We are going to automatically add stuff to known_hosts
|
||||
# something like paramiko's AutoAddPolicy()
|
||||
login_info["known_hosts"] = None
|
||||
@@ -116,10 +121,12 @@ class SSHFileSystem(CallbackMixin, FSSpecWrapper):
|
||||
# Ensure that if an interrupt happens during the transfer, we don't
|
||||
# pollute the cache.
|
||||
|
||||
def _upload_fobj(self, fobj, to_info, *args, **kwargs):
|
||||
def upload_fobj(self, fobj, to_info, **kwargs):
|
||||
with as_atomic(self, to_info) as tmp_file:
|
||||
super()._upload_fobj(fobj, tmp_file, *args, **kwargs)
|
||||
super().upload_fobj(fobj, tmp_file, **kwargs)
|
||||
|
||||
def _upload(self, from_file, to_info, *args, **kwargs):
|
||||
def put_file(
|
||||
self, from_file, to_info, callback=DEFAULT_CALLBACK, **kwargs
|
||||
):
|
||||
with as_atomic(self, to_info) as tmp_file:
|
||||
super()._upload(from_file, tmp_file, *args, **kwargs)
|
||||
super().put_file(from_file, tmp_file, callback=callback, **kwargs)
|
||||
|
||||
@@ -0,0 +1,56 @@
|
||||
import logging
|
||||
import os
|
||||
from typing import TYPE_CHECKING
|
||||
|
||||
from .local import LocalFileSystem
|
||||
|
||||
if TYPE_CHECKING:
|
||||
from dvc.types import AnyPath, DvcPath
|
||||
|
||||
from .base import BaseFileSystem
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
def transfer(
|
||||
from_fs: "BaseFileSystem",
|
||||
from_info: "AnyPath",
|
||||
to_fs: "BaseFileSystem",
|
||||
to_info: "DvcPath",
|
||||
move: bool = False,
|
||||
) -> None:
|
||||
use_move = isinstance(from_fs, type(to_fs)) and move
|
||||
try:
|
||||
if use_move:
|
||||
return to_fs.move(from_info, to_info)
|
||||
|
||||
if isinstance(from_fs, LocalFileSystem):
|
||||
if not isinstance(from_info, from_fs.PATH_CLS):
|
||||
from_info = from_fs.PATH_CLS(from_info)
|
||||
return to_fs.upload(from_info, to_info)
|
||||
|
||||
if isinstance(to_fs, LocalFileSystem):
|
||||
return from_fs.download_file(from_info, to_info)
|
||||
|
||||
with from_fs.open(from_info, mode="rb") as fobj:
|
||||
size = from_fs.getsize(from_info)
|
||||
return to_fs.upload(fobj, to_info, total=size)
|
||||
except OSError as exc:
|
||||
# If the target file already exists, we are going to simply
|
||||
# ignore the exception (#4992).
|
||||
#
|
||||
# On Windows, it is not always guaranteed that you'll get
|
||||
# FileExistsError (it might be PermissionError or a bare OSError)
|
||||
# but all of those exceptions raised from the original
|
||||
# FileExistsError so we have a separate check for that.
|
||||
if isinstance(exc, FileExistsError) or (
|
||||
os.name == "nt"
|
||||
and exc.__context__
|
||||
and isinstance(exc.__context__, FileExistsError)
|
||||
):
|
||||
logger.debug("'%s' file already exists, skipping", to_info)
|
||||
if use_move:
|
||||
from_fs.remove(from_info)
|
||||
return None
|
||||
|
||||
raise
|
||||
+3
-6
@@ -1,5 +1,4 @@
|
||||
import logging
|
||||
import os
|
||||
import threading
|
||||
from functools import lru_cache
|
||||
|
||||
@@ -71,15 +70,13 @@ class WebDAVFileSystem(FSSpecWrapper): # pylint:disable=abstract-method
|
||||
|
||||
return WebdavFileSystem(**self.fs_args)
|
||||
|
||||
def _upload_fobj(self, fobj, to_info, size: int = None):
|
||||
def upload_fobj(self, fobj, to_info, **kwargs):
|
||||
rpath = self.translate_path_info(to_info)
|
||||
self.makedirs(os.path.dirname(rpath))
|
||||
size = kwargs.get("size")
|
||||
# using upload_fileobj to directly upload fileobj rather than buffering
|
||||
# and using overwrite=True to avoid check for an extra exists call,
|
||||
# as caller should ensure that the file does not exist beforehand.
|
||||
return self.fs.client.upload_fileobj(
|
||||
fobj, rpath, overwrite=True, size=size
|
||||
)
|
||||
return self.fs.upload_fileobj(fobj, rpath, overwrite=True, size=size)
|
||||
|
||||
@lru_cache(512)
|
||||
def translate_path_info(self, path):
|
||||
|
||||
+30
-21
@@ -9,7 +9,7 @@ from funcy import cached_property, wrap_prop
|
||||
|
||||
from dvc.hash_info import HashInfo
|
||||
from dvc.path_info import CloudURLInfo
|
||||
from dvc.progress import Tqdm
|
||||
from dvc.progress import DEFAULT_CALLBACK
|
||||
from dvc.scheme import Schemes
|
||||
|
||||
from .base import BaseFileSystem
|
||||
@@ -29,6 +29,15 @@ def update_pbar(pbar, total):
|
||||
return update
|
||||
|
||||
|
||||
def update_callback(callback, total):
|
||||
def update(_, bytes_transfered):
|
||||
if bytes_transfered == -1:
|
||||
return callback.absolute_update(total)
|
||||
return callback.relative_update(bytes_transfered)
|
||||
|
||||
return update
|
||||
|
||||
|
||||
class WebHDFSFileSystem(BaseFileSystem): # pylint:disable=abstract-method
|
||||
scheme = Schemes.WEBHDFS
|
||||
PATH_CLS = CloudURLInfo
|
||||
@@ -141,31 +150,31 @@ class WebHDFSFileSystem(BaseFileSystem): # pylint:disable=abstract-method
|
||||
self.hdfs_client.makedirs(to_info.parent.path)
|
||||
self.hdfs_client.rename(from_info.path, to_info.path)
|
||||
|
||||
def _upload_fobj(self, fobj, to_info, **kwargs):
|
||||
def upload_fobj(self, fobj, to_info, **kwargs):
|
||||
with self.hdfs_client.write(to_info.path) as fdest:
|
||||
shutil.copyfileobj(fobj, fdest)
|
||||
|
||||
def _upload(
|
||||
self, from_file, to_info, name=None, no_progress_bar=False, **_kwargs
|
||||
def put_file(
|
||||
self, from_file, to_info, callback=DEFAULT_CALLBACK, **kwargs
|
||||
):
|
||||
total = os.path.getsize(from_file)
|
||||
with Tqdm(
|
||||
desc=name, total=total, disable=no_progress_bar, bytes=True
|
||||
) as pbar:
|
||||
self.hdfs_client.upload(
|
||||
to_info.path,
|
||||
from_file,
|
||||
overwrite=True,
|
||||
progress=update_pbar(pbar, total),
|
||||
)
|
||||
callback.set_size(total)
|
||||
|
||||
def _download(
|
||||
self, from_info, to_file, name=None, no_progress_bar=False, **_kwargs
|
||||
self.hdfs_client.makedirs(to_info.parent.path)
|
||||
return self.hdfs_client.upload(
|
||||
to_info.path,
|
||||
from_file,
|
||||
overwrite=True,
|
||||
progress=update_callback(callback, total),
|
||||
)
|
||||
|
||||
def get_file(
|
||||
self, from_info, to_file, callback=DEFAULT_CALLBACK, **kwargs
|
||||
):
|
||||
total = self.getsize(from_info)
|
||||
with Tqdm(
|
||||
desc=name, total=total, disable=no_progress_bar, bytes=True
|
||||
) as pbar:
|
||||
self.hdfs_client.download(
|
||||
from_info.path, to_file, progress=update_pbar(pbar, total)
|
||||
)
|
||||
if total:
|
||||
callback.set_size(total)
|
||||
|
||||
self.hdfs_client.download(
|
||||
from_info.path, to_file, progress=update_callback(callback, total)
|
||||
)
|
||||
|
||||
@@ -0,0 +1,202 @@
|
||||
import logging
|
||||
import os
|
||||
from typing import (
|
||||
TYPE_CHECKING,
|
||||
Dict,
|
||||
Iterable,
|
||||
Mapping,
|
||||
Optional,
|
||||
Tuple,
|
||||
Type,
|
||||
)
|
||||
|
||||
from dvc.exceptions import DvcException
|
||||
from dvc.types import StrPath
|
||||
|
||||
if TYPE_CHECKING:
|
||||
from dvc.repo import Repo
|
||||
|
||||
from .backend.base import BaseMachineBackend
|
||||
|
||||
BackendCls = Type[BaseMachineBackend]
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
RESERVED_NAMES = {"local", "localhost"}
|
||||
|
||||
DEFAULT_STARTUP_SCRIPT = """#!/bin/bash
|
||||
sudo apt-get update
|
||||
sudo apt-get install --yes python3 python3-pip
|
||||
python3 -m pip install --upgrade pip
|
||||
|
||||
pushd /etc/apt/sources.list.d
|
||||
sudo wget https://dvc.org/deb/dvc.list
|
||||
sudo apt-get update
|
||||
sudo apt-get install --yes dvc
|
||||
popd
|
||||
"""
|
||||
|
||||
|
||||
def validate_name(name: str):
|
||||
from dvc.exceptions import InvalidArgumentError
|
||||
|
||||
name = name.lower()
|
||||
if name in RESERVED_NAMES:
|
||||
raise InvalidArgumentError(
|
||||
f"Machine name '{name}' is reserved for internal DVC use."
|
||||
)
|
||||
|
||||
|
||||
class MachineBackends(Mapping):
|
||||
try:
|
||||
from .backend.terraform import TerraformBackend
|
||||
except ImportError:
|
||||
TerraformBackend = None # type: ignore[assignment, misc]
|
||||
|
||||
DEFAULT: Dict[str, Optional["BackendCls"]] = {
|
||||
"terraform": TerraformBackend,
|
||||
}
|
||||
|
||||
def __getitem__(self, key: str) -> "BaseMachineBackend":
|
||||
"""Lazily initialize backends and cache it afterwards"""
|
||||
initialized = self.initialized.get(key)
|
||||
if not initialized:
|
||||
backend = self.backends[key]
|
||||
initialized = backend(
|
||||
os.path.join(self.tmp_dir, key), **self.kwargs
|
||||
)
|
||||
self.initialized[key] = initialized
|
||||
return initialized
|
||||
|
||||
def __init__(
|
||||
self,
|
||||
selected: Optional[Iterable[str]],
|
||||
tmp_dir: StrPath,
|
||||
**kwargs,
|
||||
) -> None:
|
||||
selected = selected or list(self.DEFAULT)
|
||||
self.backends: Dict[str, "BackendCls"] = {}
|
||||
for key in selected:
|
||||
cls = self.DEFAULT.get(key)
|
||||
if cls is None:
|
||||
raise DvcException(
|
||||
f"'dvc machine' backend '{key}' is missing required "
|
||||
"dependencies. Install them with:\n"
|
||||
f"\tpip install dvc[{key}]"
|
||||
)
|
||||
self.backends[key] = cls
|
||||
|
||||
self.initialized: Dict[str, "BaseMachineBackend"] = {}
|
||||
|
||||
self.tmp_dir = tmp_dir
|
||||
self.kwargs = kwargs
|
||||
|
||||
def __iter__(self):
|
||||
return iter(self.backends)
|
||||
|
||||
def __len__(self) -> int:
|
||||
return len(self.backends)
|
||||
|
||||
def close_initialized(self) -> None:
|
||||
for backend in self.initialized.values():
|
||||
backend.close()
|
||||
|
||||
|
||||
class MachineManager:
|
||||
"""Class that manages dvc cloud machines.
|
||||
|
||||
Args:
|
||||
repo (dvc.repo.Repo): repo instance that belongs to the repo that
|
||||
we are working on.
|
||||
|
||||
Raises:
|
||||
config.ConfigError: thrown when config has invalid format.
|
||||
"""
|
||||
|
||||
CLOUD_BACKENDS = {
|
||||
"aws": "terraform",
|
||||
"azure": "terraform",
|
||||
}
|
||||
|
||||
def __init__(
|
||||
self, repo: "Repo", backends: Optional[Iterable[str]] = None, **kwargs
|
||||
):
|
||||
self.repo = repo
|
||||
tmp_dir = os.path.join(self.repo.tmp_dir, "machine")
|
||||
self.backends = MachineBackends(backends, tmp_dir=tmp_dir, **kwargs)
|
||||
|
||||
def get_config_and_backend(
|
||||
self,
|
||||
name: Optional[str] = None,
|
||||
) -> Tuple[dict, "BaseMachineBackend"]:
|
||||
from dvc.config import NoMachineError
|
||||
|
||||
if not name:
|
||||
name = self.repo.config["core"].get("machine")
|
||||
|
||||
if name:
|
||||
config = self._get_config(name=name)
|
||||
backend = self._get_backend(config["cloud"])
|
||||
return config, backend
|
||||
|
||||
if bool(self.repo.config["machine"]):
|
||||
error_msg = (
|
||||
"no machine specified. Setup default machine with\n"
|
||||
" dvc machine default <name>\n"
|
||||
)
|
||||
else:
|
||||
error_msg = (
|
||||
"no machine specified. Create a default machine with\n"
|
||||
" dvc machine add -d <name> <cloud>"
|
||||
)
|
||||
|
||||
raise NoMachineError(error_msg)
|
||||
|
||||
def _get_config(self, **kwargs):
|
||||
config = self.repo.config
|
||||
name = kwargs.get("name")
|
||||
if name:
|
||||
try:
|
||||
conf = config["machine"][name.lower()]
|
||||
conf["name"] = name
|
||||
except KeyError:
|
||||
from dvc.config import MachineNotFoundError
|
||||
|
||||
raise MachineNotFoundError(f"machine '{name}' doesn't exist")
|
||||
else:
|
||||
conf = kwargs
|
||||
return conf
|
||||
|
||||
def _get_backend(self, cloud: str) -> "BaseMachineBackend":
|
||||
from dvc.config import NoMachineError
|
||||
|
||||
try:
|
||||
backend = self.CLOUD_BACKENDS[cloud]
|
||||
return self.backends[backend]
|
||||
except KeyError:
|
||||
raise NoMachineError(f"Machine platform '{cloud}' unsupported")
|
||||
|
||||
def create(self, name: Optional[str]):
|
||||
"""Create and start the specified machine instance."""
|
||||
config, backend = self.get_config_and_backend(name)
|
||||
if "startup_script" in config:
|
||||
with open(config["startup_script"]) as fobj:
|
||||
startup_script = fobj.read()
|
||||
else:
|
||||
startup_script = DEFAULT_STARTUP_SCRIPT
|
||||
config["startup_script"] = startup_script
|
||||
return backend.create(**config)
|
||||
|
||||
def destroy(self, name: Optional[str]):
|
||||
"""Destroy the specified machine instance."""
|
||||
config, backend = self.get_config_and_backend(name)
|
||||
return backend.destroy(**config)
|
||||
|
||||
def get_sshfs(self, name: Optional[str]):
|
||||
config, backend = self.get_config_and_backend(name)
|
||||
return backend.get_sshfs(**config)
|
||||
|
||||
def run_shell(self, name: Optional[str]):
|
||||
config, backend = self.get_config_and_backend(name)
|
||||
return backend.run_shell(**config)
|
||||
@@ -0,0 +1,50 @@
|
||||
from abc import ABC, abstractmethod
|
||||
from contextlib import contextmanager
|
||||
from typing import TYPE_CHECKING, Iterator, Optional
|
||||
|
||||
if TYPE_CHECKING:
|
||||
from dvc.fs.ssh import SSHFileSystem
|
||||
from dvc.repo.experiments.executor.base import BaseExecutor
|
||||
from dvc.types import StrPath
|
||||
|
||||
|
||||
class BaseMachineBackend(ABC):
|
||||
def __init__(self, tmp_dir: "StrPath", **kwargs):
|
||||
raise NotImplementedError
|
||||
|
||||
@abstractmethod
|
||||
def create(self, name: Optional[str] = None, **config):
|
||||
"""Create and start an instance of the specified machine."""
|
||||
|
||||
@abstractmethod
|
||||
def destroy(self, name: Optional[str] = None, **config):
|
||||
"""Stop and destroy all instances of the specified machine."""
|
||||
|
||||
@abstractmethod
|
||||
def instances(
|
||||
self, name: Optional[str] = None, **config
|
||||
) -> Iterator[dict]:
|
||||
"""Iterate over status of all instances of the specified machine."""
|
||||
|
||||
def close(self):
|
||||
pass
|
||||
|
||||
@abstractmethod
|
||||
def run_shell(self, name: Optional[str] = None, **config):
|
||||
"""Spawn an interactive SSH shell for the specified machine."""
|
||||
|
||||
@abstractmethod
|
||||
def get_executor(
|
||||
self, name: Optional[str] = None, **config
|
||||
) -> "BaseExecutor":
|
||||
"""Return an executor instance which can be used for DVC
|
||||
experiment/pipeline execution on the specified machine.
|
||||
"""
|
||||
|
||||
@abstractmethod
|
||||
@contextmanager
|
||||
def get_sshfs(
|
||||
self, name: Optional[str] = None, **config
|
||||
) -> Iterator["SSHFileSystem"]:
|
||||
"""Return an sshfs instance for the default directory on the
|
||||
specified machine."""
|
||||
@@ -0,0 +1,35 @@
|
||||
from contextlib import contextmanager
|
||||
from typing import TYPE_CHECKING, Iterator, Optional
|
||||
|
||||
from tpi import TerraformProviderIterative, terraform
|
||||
|
||||
from dvc.fs.ssh import SSHFileSystem
|
||||
|
||||
from .base import BaseMachineBackend
|
||||
|
||||
if TYPE_CHECKING:
|
||||
from dvc.repo.experiments.executor.base import BaseExecutor
|
||||
from dvc.types import StrPath
|
||||
|
||||
|
||||
class TerraformBackend(terraform.TerraformBackend, BaseMachineBackend):
|
||||
def __init__(self, tmp_dir: "StrPath", **kwargs):
|
||||
super().__init__(tmp_dir)
|
||||
|
||||
def get_executor(
|
||||
self, name: Optional[str] = None, **config
|
||||
) -> "BaseExecutor":
|
||||
raise NotImplementedError
|
||||
|
||||
@contextmanager
|
||||
def get_sshfs( # pylint: disable=unused-argument
|
||||
self, name: Optional[str] = None, **config
|
||||
) -> Iterator["SSHFileSystem"]:
|
||||
resource = self._default_resource(name)
|
||||
with TerraformProviderIterative.pemfile(resource) as pem:
|
||||
fs = SSHFileSystem(
|
||||
host=resource["instance_ip"],
|
||||
user="ubuntu",
|
||||
keyfile=pem,
|
||||
)
|
||||
yield fs
|
||||
+6
-39
@@ -1,12 +1,10 @@
|
||||
import itertools
|
||||
import logging
|
||||
import os
|
||||
from concurrent.futures import ThreadPoolExecutor
|
||||
from contextlib import suppress
|
||||
from copy import copy
|
||||
from typing import TYPE_CHECKING, Optional
|
||||
|
||||
from dvc.fs.local import LocalFileSystem
|
||||
from dvc.objects.errors import ObjectDBPermissionError, ObjectFormatError
|
||||
from dvc.objects.file import HashFile
|
||||
from dvc.progress import Tqdm
|
||||
@@ -85,38 +83,12 @@ class ObjectDB:
|
||||
_hash_info: "HashInfo",
|
||||
move: bool = False,
|
||||
):
|
||||
from dvc import fs
|
||||
|
||||
self.makedirs(to_info.parent)
|
||||
use_move = isinstance(from_fs, type(self.fs)) and move
|
||||
try:
|
||||
if use_move:
|
||||
self.fs.move(from_info, to_info)
|
||||
elif isinstance(from_fs, LocalFileSystem):
|
||||
if not isinstance(from_info, from_fs.PATH_CLS):
|
||||
from_info = from_fs.PATH_CLS(from_info)
|
||||
self.fs.upload(from_info, to_info)
|
||||
elif isinstance(self.fs, LocalFileSystem):
|
||||
from_fs.download_file(from_info, to_info)
|
||||
else:
|
||||
with from_fs.open(from_info, mode="rb") as fobj:
|
||||
self.fs.upload_fobj(fobj, to_info)
|
||||
except OSError as exc:
|
||||
# If the target file already exists, we are going to simply
|
||||
# ignore the exception (#4992).
|
||||
#
|
||||
# On Windows, it is not always guaranteed that you'll get
|
||||
# FileExistsError (it might be PermissionError or a bare OSError)
|
||||
# but all of those exceptions raised from the original
|
||||
# FileExistsError so we have a separate check for that.
|
||||
if isinstance(exc, FileExistsError) or (
|
||||
os.name == "nt"
|
||||
and exc.__context__
|
||||
and isinstance(exc.__context__, FileExistsError)
|
||||
):
|
||||
logger.debug("'%s' file already exists, skipping", to_info)
|
||||
if use_move:
|
||||
from_fs.remove(from_info)
|
||||
else:
|
||||
raise
|
||||
return fs.utils.transfer(
|
||||
from_fs, from_info, self.fs, to_info, move=move
|
||||
)
|
||||
|
||||
def add(
|
||||
self,
|
||||
@@ -125,7 +97,6 @@ class ObjectDB:
|
||||
hash_info: "HashInfo",
|
||||
move: bool = True,
|
||||
verify: Optional[bool] = None,
|
||||
**kwargs,
|
||||
):
|
||||
if self.read_only:
|
||||
raise ObjectDBPermissionError("Cannot add to read-only ODB")
|
||||
@@ -139,7 +110,7 @@ class ObjectDB:
|
||||
pass
|
||||
|
||||
cache_info = self.hash_to_path_info(hash_info.value)
|
||||
self._add_file(fs, path_info, cache_info, hash_info, move)
|
||||
self._add_file(fs, path_info, cache_info, hash_info, move=move)
|
||||
|
||||
try:
|
||||
if verify:
|
||||
@@ -149,10 +120,6 @@ class ObjectDB:
|
||||
except (ObjectFormatError, FileNotFoundError):
|
||||
pass
|
||||
|
||||
callback = kwargs.get("download_callback")
|
||||
if callback:
|
||||
callback(1)
|
||||
|
||||
def hash_to_path_info(self, hash_) -> "DvcPath":
|
||||
return self.path_info / hash_[0:2] / hash_[2:]
|
||||
|
||||
|
||||
@@ -70,7 +70,7 @@ class ReferenceObjectDB(ObjectDB):
|
||||
ref_fobj = io.BytesIO(ref_file.to_bytes())
|
||||
ref_fobj.seek(0)
|
||||
try:
|
||||
self.fs.upload_fobj(ref_fobj, to_info)
|
||||
self.fs.upload(ref_fobj, to_info)
|
||||
except OSError as exc:
|
||||
if isinstance(exc, FileExistsError) or (
|
||||
os.name == "nt"
|
||||
|
||||
@@ -2,7 +2,7 @@ import errno
|
||||
import logging
|
||||
import os
|
||||
import pickle
|
||||
from typing import TYPE_CHECKING, Optional, Tuple
|
||||
from typing import TYPE_CHECKING, Optional
|
||||
|
||||
from .errors import ObjectFormatError
|
||||
from .file import HashFile
|
||||
@@ -20,8 +20,7 @@ logger = logging.getLogger(__name__)
|
||||
class ReferenceHashFile(HashFile):
|
||||
PARAM_PATH = "path"
|
||||
PARAM_HASH = "hash"
|
||||
PARAM_MTIME = "mtime"
|
||||
PARAM_SIZE = "size"
|
||||
PARAM_CHECKSUM = "checksum"
|
||||
PARAM_FS_CONFIG = "fs_config"
|
||||
|
||||
def __init__(
|
||||
@@ -29,14 +28,11 @@ class ReferenceHashFile(HashFile):
|
||||
path_info: "AnyPath",
|
||||
fs: "BaseFileSystem",
|
||||
hash_info: "HashInfo",
|
||||
mtime: Optional[str] = None,
|
||||
size: Optional[int] = None,
|
||||
checksum: Optional[str] = None,
|
||||
**kwargs,
|
||||
):
|
||||
super().__init__(path_info, fs, hash_info, **kwargs)
|
||||
cur_mtime, cur_size = self._get_mtime_and_size()
|
||||
self.mtime = cur_mtime if mtime is None else mtime
|
||||
self.hash_info.size = cur_size if size is None else size
|
||||
self.checksum = checksum or fs.checksum(path_info)
|
||||
|
||||
def __str__(self):
|
||||
return f"ref object {self.hash_info} -> {self.path_info}"
|
||||
@@ -47,21 +43,14 @@ class ReferenceHashFile(HashFile):
|
||||
raise FileNotFoundError(
|
||||
errno.ENOENT, os.strerror(errno.ENOENT), self.path_info
|
||||
)
|
||||
if not (self.mtime, self.size) == self._get_mtime_and_size():
|
||||
if self.checksum != self._get_checksum():
|
||||
raise ObjectFormatError(f"{self} is changed")
|
||||
if check_hash:
|
||||
self._check_hash(odb)
|
||||
|
||||
def _get_mtime_and_size(self) -> Tuple[Optional[str], int]:
|
||||
from dvc.utils.fs import get_mtime_and_size
|
||||
|
||||
def _get_checksum(self) -> str:
|
||||
assert self.fs
|
||||
if hasattr(self.fs, "stat"):
|
||||
try:
|
||||
return get_mtime_and_size(self.path_info, self.fs)
|
||||
except FileNotFoundError:
|
||||
pass
|
||||
return None, self.fs.getsize(self.path_info)
|
||||
return self.fs.checksum(self.path_info)
|
||||
|
||||
def to_bytes(self):
|
||||
from dvc.fs.repo import RepoFileSystem
|
||||
@@ -79,8 +68,7 @@ class ReferenceHashFile(HashFile):
|
||||
dict_ = {
|
||||
self.PARAM_PATH: path_info,
|
||||
self.PARAM_HASH: self.hash_info,
|
||||
self.PARAM_MTIME: self.mtime,
|
||||
self.PARAM_SIZE: self.size,
|
||||
self.PARAM_CHECKSUM: self.checksum,
|
||||
self.PARAM_FS_CONFIG: self.config_tuple(self.fs),
|
||||
}
|
||||
try:
|
||||
@@ -118,8 +106,7 @@ class ReferenceHashFile(HashFile):
|
||||
path_info,
|
||||
fs,
|
||||
hash_info,
|
||||
mtime=dict_.get(cls.PARAM_MTIME),
|
||||
size=dict_.get(cls.PARAM_SIZE),
|
||||
checksum=dict_.get(cls.PARAM_CHECKSUM),
|
||||
)
|
||||
|
||||
@staticmethod
|
||||
|
||||
@@ -34,9 +34,8 @@ def _upload_file(path_info, fs, odb, upload_odb):
|
||||
tmp_info = upload_odb.path_info / tmp_fname()
|
||||
with fs.open(path_info, mode="rb", chunk_size=fs.CHUNK_SIZE) as stream:
|
||||
stream = HashedStreamReader(stream)
|
||||
upload_odb.fs.upload_fobj(
|
||||
stream, tmp_info, desc=path_info.name, size=fs.getsize(path_info)
|
||||
)
|
||||
size = fs.getsize(path_info)
|
||||
upload_odb.fs.upload(stream, tmp_info, desc=path_info.name, total=size)
|
||||
|
||||
odb.add(tmp_info, upload_odb.fs, stream.hash_info)
|
||||
return path_info, odb.get(stream.hash_info)
|
||||
|
||||
+40
-107
@@ -1,20 +1,19 @@
|
||||
import errno
|
||||
import itertools
|
||||
import logging
|
||||
from concurrent import futures
|
||||
from concurrent.futures import ThreadPoolExecutor
|
||||
from functools import partial, wraps
|
||||
from typing import TYPE_CHECKING, Callable, Iterable, Optional
|
||||
from typing import TYPE_CHECKING, Any, Callable, Iterable, Optional
|
||||
|
||||
from funcy import split
|
||||
|
||||
from dvc.progress import Tqdm
|
||||
from dvc.utils.threadpool import ThreadPoolExecutor
|
||||
|
||||
if TYPE_CHECKING:
|
||||
from dvc.hash_info import HashInfo
|
||||
|
||||
from .db.base import ObjectDB
|
||||
from .db.index import ObjectDBIndexBase
|
||||
from .tree import Tree
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
@@ -38,109 +37,48 @@ def _log_exceptions(func):
|
||||
return wrapper
|
||||
|
||||
|
||||
def _transfer(
|
||||
src, dest, dir_ids, file_ids, missing_ids, jobs, verify, move, **kwargs
|
||||
):
|
||||
func = _log_exceptions(dest.add)
|
||||
total = len(dir_ids) + len(file_ids)
|
||||
if total == 0:
|
||||
return 0
|
||||
with Tqdm(total=total, unit="file", desc="Transferring") as pbar:
|
||||
func = pbar.wrap_fn(func)
|
||||
with ThreadPoolExecutor(max_workers=jobs) as executor:
|
||||
processor = partial(
|
||||
_create_tasks,
|
||||
executor,
|
||||
jobs,
|
||||
func,
|
||||
src,
|
||||
verify,
|
||||
move,
|
||||
)
|
||||
processor.add_func = func
|
||||
_do_transfer(
|
||||
src,
|
||||
dest,
|
||||
dir_ids,
|
||||
file_ids,
|
||||
missing_ids,
|
||||
processor,
|
||||
verify=verify,
|
||||
move=move,
|
||||
**kwargs,
|
||||
)
|
||||
return total
|
||||
def find_tree_by_obj_id(
|
||||
odbs: Iterable[Optional["ObjectDB"]], obj_id: "HashInfo"
|
||||
) -> Optional["Tree"]:
|
||||
from .errors import ObjectFormatError
|
||||
from .tree import Tree
|
||||
|
||||
|
||||
def _create_tasks(executor, jobs, func, src, verify, move, obj_ids):
|
||||
fails = 0
|
||||
hash_iter = iter(obj_ids)
|
||||
|
||||
def submit(hash_info):
|
||||
obj = src.get(hash_info)
|
||||
return executor.submit(
|
||||
func,
|
||||
obj.path_info,
|
||||
obj.fs,
|
||||
obj.hash_info,
|
||||
verify=verify,
|
||||
move=move,
|
||||
)
|
||||
|
||||
def create_taskset(amount):
|
||||
return {
|
||||
submit(hash_info)
|
||||
for hash_info in itertools.islice(hash_iter, amount)
|
||||
}
|
||||
|
||||
tasks = create_taskset(jobs * 5)
|
||||
while tasks:
|
||||
done, tasks = futures.wait(tasks, return_when=futures.FIRST_COMPLETED)
|
||||
fails += sum(task.result() for task in done)
|
||||
tasks.update(create_taskset(len(done)))
|
||||
return fails
|
||||
for odb in odbs:
|
||||
if odb is not None:
|
||||
try:
|
||||
return Tree.load(odb, obj_id)
|
||||
except (FileNotFoundError, ObjectFormatError):
|
||||
pass
|
||||
return None
|
||||
|
||||
|
||||
def _do_transfer(
|
||||
src: "ObjectDB",
|
||||
dest: "ObjectDB",
|
||||
dir_ids: Iterable["HashInfo"],
|
||||
file_ids: Iterable["HashInfo"],
|
||||
obj_ids: Iterable["HashInfo"],
|
||||
missing_ids: Iterable["HashInfo"],
|
||||
processor: Callable,
|
||||
src_index: Optional["ObjectDBIndexBase"] = None,
|
||||
dest_index: Optional["ObjectDBIndexBase"] = None,
|
||||
cache_odb: Optional["ObjectDB"] = None,
|
||||
**kwargs,
|
||||
**kwargs: Any,
|
||||
):
|
||||
from dvc.exceptions import FileTransferError
|
||||
from dvc.objects.errors import ObjectFormatError
|
||||
|
||||
dir_ids, file_ids = split(lambda hash_info: hash_info.isdir, obj_ids)
|
||||
total_fails = 0
|
||||
succeeded_dir_objs = []
|
||||
all_file_ids = set(file_ids)
|
||||
|
||||
for dir_hash in dir_ids:
|
||||
from .tree import Tree
|
||||
|
||||
bound_file_ids = set()
|
||||
dir_obj: Optional["Tree"] = None
|
||||
for odb in (cache_odb, src):
|
||||
if odb is not None:
|
||||
try:
|
||||
dir_obj = Tree.load(odb, dir_hash)
|
||||
break
|
||||
except (FileNotFoundError, ObjectFormatError):
|
||||
pass
|
||||
dir_obj = find_tree_by_obj_id([cache_odb, src], dir_hash)
|
||||
assert dir_obj
|
||||
|
||||
entry_ids = {entry.hash_info for _, entry in dir_obj}
|
||||
bound_file_ids = all_file_ids & entry_ids
|
||||
all_file_ids -= entry_ids
|
||||
|
||||
for file_hash in all_file_ids.copy():
|
||||
if file_hash in entry_ids:
|
||||
bound_file_ids.add(file_hash)
|
||||
all_file_ids.remove(file_hash)
|
||||
|
||||
dir_fails = processor(bound_file_ids)
|
||||
dir_fails = sum(processor(bound_file_ids))
|
||||
if dir_fails:
|
||||
logger.debug(
|
||||
"failed to upload full contents of '%s', "
|
||||
@@ -164,19 +102,13 @@ def _do_transfer(
|
||||
dir_obj.name,
|
||||
)
|
||||
else:
|
||||
raw_obj = src.get(dir_obj.hash_info)
|
||||
is_dir_failed = processor.add_func( # type: ignore[attr-defined]
|
||||
raw_obj.path_info,
|
||||
raw_obj.fs,
|
||||
raw_obj.hash_info,
|
||||
**kwargs,
|
||||
)
|
||||
is_dir_failed = sum(processor([dir_obj.hash_info]))
|
||||
total_fails += is_dir_failed
|
||||
if not is_dir_failed:
|
||||
succeeded_dir_objs.append(dir_obj)
|
||||
|
||||
# insert the rest
|
||||
total_fails += processor(all_file_ids)
|
||||
total_fails += sum(processor(all_file_ids))
|
||||
if total_fails:
|
||||
if src_index:
|
||||
src_index.clear()
|
||||
@@ -222,18 +154,19 @@ def transfer(
|
||||
if not status.new:
|
||||
return 0
|
||||
|
||||
dir_ids, file_ids = split(lambda hash_info: hash_info.isdir, status.new)
|
||||
if jobs is None:
|
||||
jobs = dest.fs.jobs
|
||||
def func(hash_info: "HashInfo") -> None:
|
||||
obj = src.get(hash_info)
|
||||
return dest.add(
|
||||
obj.path_info, obj.fs, obj.hash_info, verify=verify, move=move
|
||||
)
|
||||
|
||||
return _transfer(
|
||||
src,
|
||||
dest,
|
||||
set(dir_ids),
|
||||
set(file_ids),
|
||||
status.missing,
|
||||
jobs,
|
||||
verify,
|
||||
move,
|
||||
**kwargs,
|
||||
)
|
||||
total = len(status.new)
|
||||
jobs = jobs or dest.fs.jobs
|
||||
with Tqdm(total=total, unit="file", desc="Transferring") as pbar:
|
||||
with ThreadPoolExecutor(max_workers=jobs) as executor:
|
||||
wrapped_func = pbar.wrap_fn(_log_exceptions(func))
|
||||
processor = partial(executor.imap_unordered, wrapped_func)
|
||||
_do_transfer(
|
||||
src, dest, status.new, status.missing, processor, **kwargs
|
||||
)
|
||||
return total
|
||||
|
||||
+30
-12
@@ -81,6 +81,7 @@ def loadd_from(stage, d_list):
|
||||
desc = d.pop(Output.PARAM_DESC, False)
|
||||
isexec = d.pop(Output.PARAM_ISEXEC, False)
|
||||
live = d.pop(Output.PARAM_LIVE, False)
|
||||
remote = d.pop(Output.PARAM_REMOTE, None)
|
||||
ret.append(
|
||||
_get(
|
||||
stage,
|
||||
@@ -94,6 +95,7 @@ def loadd_from(stage, d_list):
|
||||
desc=desc,
|
||||
isexec=isexec,
|
||||
live=live,
|
||||
remote=remote,
|
||||
)
|
||||
)
|
||||
return ret
|
||||
@@ -109,6 +111,7 @@ def loads_from(
|
||||
checkpoint=False,
|
||||
isexec=False,
|
||||
live=False,
|
||||
remote=None,
|
||||
):
|
||||
return [
|
||||
_get(
|
||||
@@ -122,6 +125,7 @@ def loads_from(
|
||||
checkpoint=checkpoint,
|
||||
isexec=isexec,
|
||||
live=live,
|
||||
remote=remote,
|
||||
)
|
||||
for s in s_list
|
||||
]
|
||||
@@ -162,7 +166,6 @@ def load_from_pipeline(stage, data, typ="outs"):
|
||||
metric = typ == stage.PARAM_METRICS
|
||||
plot = typ == stage.PARAM_PLOTS
|
||||
live = typ == stage.PARAM_LIVE
|
||||
|
||||
if live:
|
||||
# `live` is single object
|
||||
data = [data]
|
||||
@@ -185,6 +188,7 @@ def load_from_pipeline(stage, data, typ="outs"):
|
||||
Output.PARAM_CACHE,
|
||||
Output.PARAM_PERSIST,
|
||||
Output.PARAM_CHECKPOINT,
|
||||
Output.PARAM_REMOTE,
|
||||
],
|
||||
)
|
||||
|
||||
@@ -255,6 +259,7 @@ class Output:
|
||||
PARAM_LIVE = "live"
|
||||
PARAM_LIVE_SUMMARY = "summary"
|
||||
PARAM_LIVE_HTML = "html"
|
||||
PARAM_REMOTE = "remote"
|
||||
|
||||
METRIC_SCHEMA = Any(
|
||||
None,
|
||||
@@ -283,6 +288,7 @@ class Output:
|
||||
live=False,
|
||||
desc=None,
|
||||
isexec=False,
|
||||
remote=None,
|
||||
):
|
||||
self.repo = stage.repo if stage else None
|
||||
|
||||
@@ -326,7 +332,7 @@ class Output:
|
||||
self.obj = None
|
||||
self.isexec = False if self.IS_DEPENDENCY else isexec
|
||||
|
||||
self.def_remote = None
|
||||
self.remote = remote
|
||||
|
||||
def _parse_path(self, fs, path_info):
|
||||
if fs.scheme != "local":
|
||||
@@ -843,6 +849,8 @@ class Output:
|
||||
try:
|
||||
objects.check(self.odb, obj)
|
||||
except FileNotFoundError:
|
||||
if self.remote:
|
||||
kwargs["remote"] = self.remote
|
||||
self.repo.cloud.pull([obj.hash_info], **kwargs)
|
||||
|
||||
if self.obj:
|
||||
@@ -855,9 +863,9 @@ class Output:
|
||||
|
||||
return self.obj
|
||||
|
||||
def collect_used_dir_cache(
|
||||
def _collect_used_dir_cache(
|
||||
self, remote=None, force=False, jobs=None, filter_info=None
|
||||
) -> Dict[Optional["ObjectDB"], Set["HashInfo"]]:
|
||||
) -> Optional["Tree"]:
|
||||
"""Fetch dir cache and return used object IDs for this out."""
|
||||
|
||||
try:
|
||||
@@ -878,13 +886,13 @@ class Output:
|
||||
"unable to fully collect used cache"
|
||||
" without cache for directory '{}'".format(self)
|
||||
)
|
||||
return {}
|
||||
return None
|
||||
|
||||
obj = self.get_obj()
|
||||
if filter_info and filter_info != self.path_info:
|
||||
prefix = filter_info.relative_to(self.path_info).parts
|
||||
obj = obj.filter(prefix)
|
||||
return {None: set(self._named_obj_ids(obj))}
|
||||
return obj
|
||||
|
||||
def get_used_objs(
|
||||
self, **kwargs
|
||||
@@ -917,22 +925,31 @@ class Output:
|
||||
return {}
|
||||
|
||||
if self.is_dir_checksum:
|
||||
return self.collect_used_dir_cache(**kwargs)
|
||||
obj = self._collect_used_dir_cache(**kwargs)
|
||||
else:
|
||||
obj = self.get_obj(filter_info=kwargs.get("filter_info"))
|
||||
if not obj:
|
||||
obj = self.odb.get(self.hash_info)
|
||||
|
||||
obj = self.get_obj(filter_info=kwargs.get("filter_info"))
|
||||
if not obj:
|
||||
obj = self.odb.get(self.hash_info)
|
||||
return {}
|
||||
|
||||
return {None: set(self._named_obj_ids(obj))}
|
||||
if self.remote:
|
||||
remote = self.repo.cloud.get_remote_odb(name=self.remote)
|
||||
else:
|
||||
remote = None
|
||||
|
||||
return {remote: self._named_obj_ids(obj)}
|
||||
|
||||
def _named_obj_ids(self, obj):
|
||||
name = str(self)
|
||||
obj.hash_info.obj_name = name
|
||||
yield obj.hash_info
|
||||
oids = {obj.hash_info}
|
||||
if isinstance(obj, Tree):
|
||||
for key, entry_obj in obj:
|
||||
entry_obj.hash_info.obj_name = self.fs.sep.join([name, *key])
|
||||
yield entry_obj.hash_info
|
||||
oids.add(entry_obj.hash_info)
|
||||
return oids
|
||||
|
||||
def get_used_external(
|
||||
self, **kwargs
|
||||
@@ -1033,4 +1050,5 @@ SCHEMA = {
|
||||
Output.PARAM_CACHE: bool,
|
||||
Output.PARAM_METRIC: Output.METRIC_SCHEMA,
|
||||
Output.PARAM_DESC: str,
|
||||
Output.PARAM_REMOTE: str,
|
||||
}
|
||||
|
||||
+29
-1
@@ -1,5 +1,4 @@
|
||||
"""Manages progress bars for DVC repo."""
|
||||
|
||||
import logging
|
||||
import sys
|
||||
from threading import RLock
|
||||
@@ -182,9 +181,38 @@ class FsspecCallback(fsspec.Callback):
|
||||
size = self.fs.info(self.path_info)["size"]
|
||||
self.progress_bar.total = size
|
||||
self.progress_bar.refresh()
|
||||
super().set_size(size)
|
||||
|
||||
def relative_update(self, inc=1):
|
||||
self.progress_bar.update(inc)
|
||||
super().relative_update(inc)
|
||||
|
||||
def absolute_update(self, value):
|
||||
self.progress_bar.update_to(value)
|
||||
super().absolute_update(value)
|
||||
|
||||
@staticmethod
|
||||
def wrap_fn(cb, fn):
|
||||
def wrapped(*args, **kwargs):
|
||||
res = fn(*args, **kwargs)
|
||||
cb.relative_update()
|
||||
return res
|
||||
|
||||
return wrapped
|
||||
|
||||
|
||||
def tdqm_or_callback_wrapped(
|
||||
fobj, method, total, callback=None, **pbar_kwargs
|
||||
):
|
||||
if callback:
|
||||
from funcy import nullcontext
|
||||
from tqdm.utils import CallbackIOWrapper
|
||||
|
||||
callback.set_size(total)
|
||||
wrapper = CallbackIOWrapper(callback.relative_update, fobj, method)
|
||||
return nullcontext(wrapper)
|
||||
|
||||
return Tqdm.wrapattr(fobj, method, total=total, bytes=True, **pbar_kwargs)
|
||||
|
||||
|
||||
DEFAULT_CALLBACK = fsspec.callbacks.NoOpCallback()
|
||||
|
||||
@@ -0,0 +1,33 @@
|
||||
import logging
|
||||
from typing import TYPE_CHECKING, Dict
|
||||
|
||||
if TYPE_CHECKING:
|
||||
from dvc.types import StrPath
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
class Renderer:
|
||||
def __init__(self, data: Dict):
|
||||
self.data = data
|
||||
|
||||
from dvc.render.utils import get_files
|
||||
|
||||
files = get_files(self.data)
|
||||
|
||||
# we assume comparison of same file between revisions for now
|
||||
assert len(files) == 1
|
||||
self.filename = files.pop()
|
||||
|
||||
def _convert(self, path: "StrPath"):
|
||||
raise NotImplementedError
|
||||
|
||||
@property
|
||||
def DIV(self):
|
||||
raise NotImplementedError
|
||||
|
||||
def generate_html(self, path: "StrPath"):
|
||||
"""this method might edit content of path"""
|
||||
partial = self._convert(path)
|
||||
div_id = f"plot_{self.filename.replace('.', '_').replace('/', '_')}"
|
||||
return self.DIV.format(id=div_id, partial=partial)
|
||||
@@ -1,11 +1,17 @@
|
||||
from typing import Dict, List, Optional
|
||||
import os
|
||||
from pathlib import Path
|
||||
from typing import TYPE_CHECKING, Dict, List, Optional
|
||||
|
||||
from dvc.exceptions import DvcException
|
||||
from dvc.types import StrPath
|
||||
|
||||
if TYPE_CHECKING:
|
||||
from dvc.render import Renderer
|
||||
from dvc.types import StrPath
|
||||
|
||||
PAGE_HTML = """<!DOCTYPE html>
|
||||
<html>
|
||||
<head>
|
||||
{refresh_tag}
|
||||
<title>DVC Plot</title>
|
||||
<script src="https://cdn.jsdelivr.net/npm/[email protected]"></script>
|
||||
<script src="https://cdn.jsdelivr.net/npm/[email protected]"></script>
|
||||
@@ -16,12 +22,6 @@ PAGE_HTML = """<!DOCTYPE html>
|
||||
</body>
|
||||
</html>"""
|
||||
|
||||
VEGA_DIV_HTML = """<div id = "{id}"></div>
|
||||
<script type = "text/javascript">
|
||||
var spec = {vega_json};
|
||||
vegaEmbed('#{id}', spec);
|
||||
</script>"""
|
||||
|
||||
|
||||
class MissingPlaceholderError(DvcException):
|
||||
def __init__(self, placeholder):
|
||||
@@ -31,14 +31,23 @@ class MissingPlaceholderError(DvcException):
|
||||
class HTML:
|
||||
PLACEHOLDER = "plot_divs"
|
||||
PLACEHOLDER_FORMAT_STR = f"{{{PLACEHOLDER}}}"
|
||||
REFRESH_PLACEHOLDER = "refresh_tag"
|
||||
REFRESH_TAG = '<meta http-equiv="refresh" content="{}">'
|
||||
|
||||
def __init__(self, template: str = None):
|
||||
def __init__(
|
||||
self,
|
||||
template: Optional[str] = None,
|
||||
refresh_seconds: Optional[int] = None,
|
||||
):
|
||||
template = template or PAGE_HTML
|
||||
if self.PLACEHOLDER_FORMAT_STR not in template:
|
||||
raise MissingPlaceholderError(self.PLACEHOLDER_FORMAT_STR)
|
||||
|
||||
self.template = template
|
||||
self.elements: List[str] = []
|
||||
self.refresh_tag = ""
|
||||
if refresh_seconds is not None:
|
||||
self.refresh_tag = self.REFRESH_TAG.format(refresh_seconds)
|
||||
|
||||
def with_metrics(self, metrics: Dict[str, Dict]) -> "HTML":
|
||||
import tabulate
|
||||
@@ -56,41 +65,43 @@ class HTML:
|
||||
self.elements.append(tabulate.tabulate(rows, header, tablefmt="html"))
|
||||
return self
|
||||
|
||||
def with_plots(self, plots: Dict[str, Dict]) -> "HTML":
|
||||
self.elements.extend(
|
||||
[
|
||||
VEGA_DIV_HTML.format(id=f"plot{i}", vega_json=plot)
|
||||
for i, plot in enumerate(plots.values())
|
||||
]
|
||||
)
|
||||
return self
|
||||
|
||||
def with_element(self, html: str) -> "HTML":
|
||||
self.elements.append(html)
|
||||
return self
|
||||
|
||||
def embed(self) -> str:
|
||||
kwargs = {self.PLACEHOLDER: "\n".join(self.elements)}
|
||||
kwargs = {
|
||||
self.PLACEHOLDER: "\n".join(self.elements),
|
||||
self.REFRESH_PLACEHOLDER: self.refresh_tag,
|
||||
}
|
||||
return self.template.format(**kwargs)
|
||||
|
||||
|
||||
def write(
|
||||
path: StrPath,
|
||||
plots: Dict[str, Dict],
|
||||
path: "StrPath",
|
||||
renderers: List["Renderer"],
|
||||
metrics: Optional[Dict[str, Dict]] = None,
|
||||
template_path: Optional[StrPath] = None,
|
||||
template_path: Optional["StrPath"] = None,
|
||||
refresh_seconds: Optional[int] = None,
|
||||
):
|
||||
|
||||
os.makedirs(path, exist_ok=True)
|
||||
|
||||
page_html = None
|
||||
if template_path:
|
||||
with open(template_path) as fobj:
|
||||
page_html = fobj.read()
|
||||
|
||||
document = HTML(page_html)
|
||||
document = HTML(page_html, refresh_seconds=refresh_seconds)
|
||||
if metrics:
|
||||
document.with_metrics(metrics)
|
||||
document.with_element("<br>")
|
||||
|
||||
document.with_plots(plots)
|
||||
for renderer in renderers:
|
||||
document.with_element(renderer.generate_html(path))
|
||||
|
||||
with open(path, "w") as fd:
|
||||
index = Path(os.path.join(path, "index.html"))
|
||||
|
||||
with open(index, "w") as fd:
|
||||
fd.write(document.embed())
|
||||
return index
|
||||
@@ -0,0 +1,64 @@
|
||||
import os
|
||||
from typing import TYPE_CHECKING
|
||||
|
||||
from dvc.render import Renderer
|
||||
from dvc.render.utils import get_files
|
||||
from dvc.utils import relpath
|
||||
|
||||
if TYPE_CHECKING:
|
||||
from dvc.types import StrPath
|
||||
|
||||
|
||||
class ImageRenderer(Renderer):
|
||||
DIV = """
|
||||
<div
|
||||
id="{id}"
|
||||
style="border: 1px solid;">
|
||||
{partial}
|
||||
</div>"""
|
||||
|
||||
def _write_image(
|
||||
self,
|
||||
page_dir_path: "StrPath",
|
||||
revision: str,
|
||||
filename: str,
|
||||
image_data: bytes,
|
||||
):
|
||||
static = os.path.join(page_dir_path, "static")
|
||||
os.makedirs(static, exist_ok=True)
|
||||
|
||||
img_path = os.path.join(
|
||||
static, f"{revision}_{filename.replace(os.sep, '_')}"
|
||||
)
|
||||
rel_img_path = relpath(img_path, page_dir_path)
|
||||
with open(img_path, "wb") as fd:
|
||||
fd.write(image_data)
|
||||
return """
|
||||
<div>
|
||||
<p>{title}</p>
|
||||
<img src="{src}">
|
||||
</div>""".format(
|
||||
title=revision, src=rel_img_path
|
||||
)
|
||||
|
||||
def _convert(self, path: "StrPath"):
|
||||
div_content = []
|
||||
for rev, rev_data in self.data.items():
|
||||
if "data" in rev_data:
|
||||
for file, file_data in rev_data.get("data", {}).items():
|
||||
if "data" in file_data:
|
||||
div_content.append(
|
||||
self._write_image(
|
||||
path, rev, file, file_data["data"]
|
||||
)
|
||||
)
|
||||
if div_content:
|
||||
div_content.insert(0, f"<p>{self.filename}</p>")
|
||||
return "\n".join(div_content)
|
||||
return ""
|
||||
|
||||
@staticmethod
|
||||
def matches(data):
|
||||
files = get_files(data)
|
||||
extensions = set(map(lambda f: os.path.splitext(f)[1], files))
|
||||
return extensions.issubset({".jpg", ".jpeg", ".gif", ".png"})
|
||||
@@ -0,0 +1,71 @@
|
||||
import os.path
|
||||
from typing import Dict, List
|
||||
|
||||
import dpath
|
||||
|
||||
|
||||
def get_files(data: Dict) -> List:
|
||||
files = set()
|
||||
for rev in data.keys():
|
||||
for file in data[rev].get("data", {}).keys():
|
||||
files.add(file)
|
||||
sorted_files = sorted(files)
|
||||
return sorted_files
|
||||
|
||||
|
||||
def group_by_filename(plots_data: Dict) -> List[Dict]:
|
||||
files = get_files(plots_data)
|
||||
grouped = []
|
||||
for file in files:
|
||||
grouped.append(dpath.util.search(plots_data, ["*", "*", file]))
|
||||
return grouped
|
||||
|
||||
|
||||
def find_vega(repo, plots_data, target):
|
||||
found = dpath.util.search(plots_data, ["*", "*", target])
|
||||
from dvc.render.vega import VegaRenderer
|
||||
|
||||
if found and VegaRenderer.matches(found):
|
||||
return VegaRenderer(found, repo.plots.templates).get_vega()
|
||||
return ""
|
||||
|
||||
|
||||
def match_renderers(plots_data, templates):
|
||||
from dvc.render.image import ImageRenderer
|
||||
from dvc.render.vega import VegaRenderer
|
||||
|
||||
renderers = []
|
||||
for g in group_by_filename(plots_data):
|
||||
if VegaRenderer.matches(g):
|
||||
renderers.append(VegaRenderer(g, templates))
|
||||
if ImageRenderer.matches(g):
|
||||
renderers.append(ImageRenderer(g))
|
||||
return renderers
|
||||
|
||||
|
||||
def render(
|
||||
repo,
|
||||
plots_data,
|
||||
metrics=None,
|
||||
path=None,
|
||||
html_template_path=None,
|
||||
refresh_seconds=None,
|
||||
):
|
||||
# TODO we could probably remove repo usages (here and in VegaRenderer)
|
||||
renderers = match_renderers(plots_data, repo.plots.templates)
|
||||
if not html_template_path:
|
||||
html_template_path = repo.config.get("plots", {}).get(
|
||||
"html_template", None
|
||||
)
|
||||
if html_template_path and not os.path.isabs(html_template_path):
|
||||
html_template_path = os.path.join(repo.dvc_dir, html_template_path)
|
||||
|
||||
from dvc.render.html import write
|
||||
|
||||
return write(
|
||||
path,
|
||||
renderers,
|
||||
metrics=metrics,
|
||||
template_path=html_template_path,
|
||||
refresh_seconds=refresh_seconds,
|
||||
)
|
||||
@@ -0,0 +1,175 @@
|
||||
import os
|
||||
from copy import copy, deepcopy
|
||||
from typing import TYPE_CHECKING, Dict, List, Optional, Union
|
||||
|
||||
from funcy import first
|
||||
|
||||
from dvc.exceptions import DvcException
|
||||
from dvc.render import Renderer
|
||||
from dvc.render.utils import get_files
|
||||
|
||||
if TYPE_CHECKING:
|
||||
from dvc.repo.plots.template import PlotTemplates
|
||||
from dvc.types import StrPath
|
||||
|
||||
REVISION_FIELD = "rev"
|
||||
INDEX_FIELD = "step"
|
||||
|
||||
|
||||
class PlotMetricTypeError(DvcException):
|
||||
def __init__(self, file):
|
||||
super().__init__(
|
||||
"'{}' - file type error\n"
|
||||
"Only JSON, YAML, CSV and TSV formats are supported.".format(file)
|
||||
)
|
||||
|
||||
|
||||
class PlotDataStructureError(DvcException):
|
||||
def __init__(self):
|
||||
super().__init__(
|
||||
"Plot data extraction failed. Please see "
|
||||
"https://man.dvc.org/plot for supported data formats."
|
||||
)
|
||||
|
||||
|
||||
def _filter_fields(
|
||||
datapoints: List[Dict], filename, revision, fields=None
|
||||
) -> List[Dict]:
|
||||
if not fields:
|
||||
return datapoints
|
||||
assert isinstance(fields, set)
|
||||
|
||||
new_data = []
|
||||
for data_point in datapoints:
|
||||
new_dp = copy(data_point)
|
||||
|
||||
keys = set(data_point.keys())
|
||||
if keys & fields != fields:
|
||||
raise DvcException(
|
||||
"Could not find fields: '{}' for '{}' at '{}'.".format(
|
||||
", ".join(fields), filename, revision
|
||||
)
|
||||
)
|
||||
|
||||
to_del = keys - fields
|
||||
for key in to_del:
|
||||
del new_dp[key]
|
||||
new_data.append(new_dp)
|
||||
return new_data
|
||||
|
||||
|
||||
def _lists(dictionary):
|
||||
for _, value in dictionary.items():
|
||||
if isinstance(value, dict):
|
||||
yield from _lists(value)
|
||||
elif isinstance(value, list):
|
||||
yield value
|
||||
|
||||
|
||||
def _find_data(data: Union[Dict, List], fields=None) -> List[Dict]:
|
||||
if not isinstance(data, dict):
|
||||
return data
|
||||
|
||||
if not fields:
|
||||
# just look for first list of dicts
|
||||
fields = set()
|
||||
|
||||
for lst in _lists(data):
|
||||
if (
|
||||
all(isinstance(dp, dict) for dp in lst)
|
||||
and set(first(lst).keys()) & fields == fields
|
||||
):
|
||||
return lst
|
||||
raise PlotDataStructureError()
|
||||
|
||||
|
||||
def _append_index(datapoints: List[Dict], append_index=False) -> List[Dict]:
|
||||
if not append_index or INDEX_FIELD in first(datapoints).keys():
|
||||
return datapoints
|
||||
|
||||
for index, data_point in enumerate(datapoints):
|
||||
data_point[INDEX_FIELD] = index
|
||||
return datapoints
|
||||
|
||||
|
||||
def _append_revision(datapoints: List[Dict], revision) -> List[Dict]:
|
||||
for data_point in datapoints:
|
||||
data_point[REVISION_FIELD] = revision
|
||||
return datapoints
|
||||
|
||||
|
||||
class VegaRenderer(Renderer):
|
||||
DIV = """
|
||||
<div id = "{id}">
|
||||
<script type = "text/javascript">
|
||||
var spec = {partial};
|
||||
vegaEmbed('#{id}', spec);
|
||||
</script>
|
||||
</div>
|
||||
"""
|
||||
|
||||
def __init__(self, data: Dict, templates: "PlotTemplates"):
|
||||
super().__init__(data)
|
||||
self.templates = templates
|
||||
|
||||
def _squash_props(self) -> Dict:
|
||||
resolved: Dict[str, str] = {}
|
||||
for rev_data in self.data.values():
|
||||
for file_data in rev_data.get("data", {}).values():
|
||||
props = file_data.get("props", {})
|
||||
resolved = {**resolved, **props}
|
||||
return resolved
|
||||
|
||||
def _datapoints(self, props: Dict):
|
||||
fields = props.get("fields", set())
|
||||
if fields:
|
||||
fields = {*fields, props.get("x"), props.get("y")} - {None}
|
||||
|
||||
datapoints = []
|
||||
for revision, rev_data in self.data.items():
|
||||
for filename, file_data in rev_data.get("data", {}).items():
|
||||
if "data" in file_data:
|
||||
tmp = deepcopy(file_data.get("data"))
|
||||
tmp = _find_data(tmp, fields=fields - {INDEX_FIELD})
|
||||
tmp = _append_index(
|
||||
tmp, append_index=props.get("append_index", False)
|
||||
)
|
||||
tmp = _filter_fields(
|
||||
tmp,
|
||||
filename=filename,
|
||||
revision=revision,
|
||||
fields=fields,
|
||||
)
|
||||
tmp = _append_revision(tmp, revision=revision)
|
||||
datapoints.extend(tmp)
|
||||
return datapoints
|
||||
|
||||
def get_vega(self) -> Optional[str]:
|
||||
props = self._squash_props()
|
||||
|
||||
template = self.templates.load(props.get("template") or "default")
|
||||
|
||||
if not props.get("x") and template.has_anchor("x"):
|
||||
props["append_index"] = True
|
||||
props["x"] = INDEX_FIELD
|
||||
|
||||
datapoints = self._datapoints(props)
|
||||
|
||||
if datapoints:
|
||||
if not props.get("y") and template.has_anchor("y"):
|
||||
fields = list(first(datapoints))
|
||||
skip = (REVISION_FIELD, props.get("x"))
|
||||
props["y"] = first(
|
||||
f for f in reversed(fields) if f not in skip
|
||||
)
|
||||
return template.render(datapoints, props=props)
|
||||
return None
|
||||
|
||||
def _convert(self, path: "StrPath"):
|
||||
return self.get_vega()
|
||||
|
||||
@staticmethod
|
||||
def matches(data):
|
||||
files = get_files(data)
|
||||
extensions = set(map(lambda f: os.path.splitext(f)[1], files))
|
||||
return extensions.issubset({".yml", ".yaml", ".json", ".csv", ".tsv"})
|
||||
@@ -12,6 +12,7 @@ from dvc.exceptions import IsADirectoryError as DvcIsADirectoryError
|
||||
from dvc.exceptions import NotDvcRepoError, OutputNotFoundError
|
||||
from dvc.ignore import DvcIgnoreFilter
|
||||
from dvc.path_info import PathInfo
|
||||
from dvc.utils import env2bool
|
||||
from dvc.utils.fs import path_isin
|
||||
|
||||
if TYPE_CHECKING:
|
||||
@@ -134,6 +135,7 @@ class Repo:
|
||||
from dvc.data_cloud import DataCloud
|
||||
from dvc.fs.local import LocalFileSystem
|
||||
from dvc.lock import LockNoop, make_lock
|
||||
from dvc.machine import MachineManager
|
||||
from dvc.objects.db import ODBManager
|
||||
from dvc.repo.live import Live
|
||||
from dvc.repo.metrics import Metrics
|
||||
@@ -196,6 +198,14 @@ class Repo:
|
||||
self.params = Params(self)
|
||||
self.live = Live(self)
|
||||
|
||||
if self.tmp_dir and (
|
||||
self.config["feature"].get("machine", False)
|
||||
or env2bool("DVC_TEST")
|
||||
):
|
||||
self.machine = MachineManager(self)
|
||||
else:
|
||||
self.machine = None
|
||||
|
||||
self.stage_collection_error_handler: Optional[
|
||||
Callable[[str, Exception], None]
|
||||
] = None
|
||||
|
||||
@@ -49,7 +49,6 @@ def _collect_paths(
|
||||
)
|
||||
else:
|
||||
logger.warning("'%s' was not found at: '%s'.", path_info, rev)
|
||||
continue
|
||||
target_infos.append(path_info)
|
||||
return target_infos
|
||||
|
||||
|
||||
+31
-30
@@ -4,7 +4,6 @@ from collections import defaultdict
|
||||
from typing import Dict, List
|
||||
|
||||
from dvc.exceptions import PathMissingError
|
||||
from dvc.objects.stage import get_file_hash
|
||||
from dvc.repo import locked
|
||||
from dvc.repo.experiments.utils import fix_exp_head
|
||||
|
||||
@@ -45,7 +44,7 @@ def diff(self, a_rev="HEAD", b_rev=None, targets=None):
|
||||
repo_fs, targets
|
||||
)
|
||||
|
||||
results[rev] = _paths_checksums(self, repo_fs, targets_path_infos)
|
||||
results[rev] = _paths_checksums(self, targets_path_infos)
|
||||
|
||||
if targets is not None:
|
||||
# check for overlapping missing targets between a_rev and b_rev
|
||||
@@ -98,7 +97,7 @@ def diff(self, a_rev="HEAD", b_rev=None, targets=None):
|
||||
return ret if any(ret.values()) else {}
|
||||
|
||||
|
||||
def _paths_checksums(repo, repo_fs, targets):
|
||||
def _paths_checksums(repo, targets):
|
||||
"""
|
||||
A dictionary of checksums addressed by relpaths collected from
|
||||
the current fs outputs.
|
||||
@@ -110,10 +109,10 @@ def _paths_checksums(repo, repo_fs, targets):
|
||||
file: "data"
|
||||
"""
|
||||
|
||||
return dict(_output_paths(repo, repo_fs, targets))
|
||||
return dict(_output_paths(repo, targets))
|
||||
|
||||
|
||||
def _output_paths(repo, repo_fs, targets):
|
||||
def _output_paths(repo, targets):
|
||||
from dvc.fs.local import LocalFileSystem
|
||||
from dvc.objects.stage import stage as ostage
|
||||
|
||||
@@ -131,45 +130,47 @@ def _output_paths(repo, repo_fs, targets):
|
||||
else os.path.join(str(output), "")
|
||||
)
|
||||
|
||||
def _to_checksum(output):
|
||||
if on_working_fs:
|
||||
return ostage(
|
||||
repo.odb.local,
|
||||
output.path_info,
|
||||
repo.odb.local.fs,
|
||||
"md5",
|
||||
dry_run=True,
|
||||
)[1].hash_info.value
|
||||
return output.hash_info.value
|
||||
|
||||
for output in repo.index.outs:
|
||||
if _exists(output):
|
||||
yield_output = targets is None or any(
|
||||
output.path_info.isin_or_eq(target) for target in targets
|
||||
)
|
||||
|
||||
if on_working_fs:
|
||||
_, obj = ostage(
|
||||
repo.odb.local,
|
||||
output.path_info,
|
||||
repo.odb.local.fs,
|
||||
"md5",
|
||||
dry_run=True,
|
||||
dvcignore=output.dvcignore,
|
||||
)
|
||||
hash_info = obj.hash_info
|
||||
else:
|
||||
hash_info = output.hash_info
|
||||
obj = output.get_obj()
|
||||
|
||||
if yield_output:
|
||||
yield _to_path(output), _to_checksum(output)
|
||||
yield _to_path(output), hash_info.value
|
||||
|
||||
if not obj:
|
||||
continue
|
||||
|
||||
if output.is_dir_checksum and (
|
||||
yield_output
|
||||
or any(target.isin(output.path_info) for target in targets)
|
||||
):
|
||||
yield from _dir_output_paths(repo_fs, output, targets)
|
||||
yield from _dir_output_paths(output.path_info, obj, targets)
|
||||
|
||||
|
||||
def _dir_output_paths(repo_fs, output, targets=None):
|
||||
from dvc.config import NoRemoteError
|
||||
|
||||
try:
|
||||
for fname in repo_fs.walk_files(output.path_info):
|
||||
if targets is None or any(
|
||||
fname.isin_or_eq(target) for target in targets
|
||||
):
|
||||
# pylint: disable=no-member
|
||||
yield str(fname), get_file_hash(fname, repo_fs, "md5").value
|
||||
except NoRemoteError:
|
||||
logger.warning("dir cache entry for '%s' is missing", output)
|
||||
def _dir_output_paths(path_info, obj, targets=None):
|
||||
for key, entry_obj in obj:
|
||||
fname = path_info.joinpath(*key)
|
||||
if targets is None or any(
|
||||
fname.isin_or_eq(target) for target in targets
|
||||
):
|
||||
# pylint: disable=no-member
|
||||
yield str(fname), entry_obj.hash_info.value
|
||||
|
||||
|
||||
def _filter_missing(repo_fs, paths):
|
||||
|
||||
@@ -348,6 +348,7 @@ class BaseExecutor(ABC):
|
||||
quiet=True,
|
||||
allow_missing=True,
|
||||
checkpoint_reset=checkpoint_reset,
|
||||
recursive=kwargs.get("recursive", False),
|
||||
)
|
||||
|
||||
checkpoint_func = partial(
|
||||
|
||||
@@ -4,7 +4,7 @@ from dvc.exceptions import DvcException, InvalidArgumentError
|
||||
from dvc.repo import locked
|
||||
from dvc.repo.scm_context import scm_context
|
||||
|
||||
from .utils import exp_commits, remote_exp_refs_by_name
|
||||
from .utils import exp_commits, resolve_exp_ref
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
@@ -14,7 +14,11 @@ logger = logging.getLogger(__name__)
|
||||
def pull(
|
||||
repo, git_remote, exp_name, *args, force=False, pull_cache=False, **kwargs
|
||||
):
|
||||
exp_ref = _get_exp_ref(repo, git_remote, exp_name)
|
||||
exp_ref = resolve_exp_ref(repo.scm, exp_name, git_remote)
|
||||
if not exp_ref:
|
||||
raise InvalidArgumentError(
|
||||
f"Experiment '{exp_name}' does not exist in '{git_remote}'"
|
||||
)
|
||||
|
||||
def on_diverged(refname: str, rev: str) -> bool:
|
||||
if repo.scm.get_ref(refname) == rev:
|
||||
@@ -35,33 +39,6 @@ def pull(
|
||||
_pull_cache(repo, exp_ref, **kwargs)
|
||||
|
||||
|
||||
def _get_exp_ref(repo, git_remote, exp_name):
|
||||
if exp_name.startswith("refs/"):
|
||||
return exp_name
|
||||
|
||||
exp_refs = list(remote_exp_refs_by_name(repo.scm, git_remote, exp_name))
|
||||
if not exp_refs:
|
||||
raise InvalidArgumentError(
|
||||
f"Experiment '{exp_name}' does not exist in '{git_remote}'"
|
||||
)
|
||||
if len(exp_refs) > 1:
|
||||
cur_rev = repo.scm.get_rev()
|
||||
for info in exp_refs:
|
||||
if info.baseline_sha == cur_rev:
|
||||
return info
|
||||
msg = [
|
||||
(
|
||||
f"Ambiguous name '{exp_name}' refers to multiple "
|
||||
"experiments in '{git_remote}'. Use full refname to pull one "
|
||||
"of the following:"
|
||||
),
|
||||
"",
|
||||
]
|
||||
msg.extend([f"\t{info}" for info in exp_refs])
|
||||
raise InvalidArgumentError("\n".join(msg))
|
||||
return exp_refs[0]
|
||||
|
||||
|
||||
def _pull_cache(repo, exp_ref, dvc_remote=None, jobs=None, run_cache=False):
|
||||
revs = list(exp_commits(repo.scm, [exp_ref]))
|
||||
logger.debug("dvc fetch experiment '%s'", exp_ref)
|
||||
|
||||
@@ -2,10 +2,9 @@ import logging
|
||||
|
||||
from dvc.exceptions import DvcException, InvalidArgumentError
|
||||
from dvc.repo import locked
|
||||
from dvc.repo.experiments.base import ExpRefInfo
|
||||
from dvc.repo.scm_context import scm_context
|
||||
|
||||
from .utils import exp_commits, exp_refs_by_name
|
||||
from .utils import exp_commits, resolve_exp_ref
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
@@ -21,7 +20,11 @@ def push(
|
||||
push_cache=False,
|
||||
**kwargs,
|
||||
):
|
||||
exp_ref = _get_exp_ref(repo, exp_name)
|
||||
exp_ref = resolve_exp_ref(repo.scm, exp_name)
|
||||
if not exp_ref:
|
||||
raise InvalidArgumentError(
|
||||
f"'{exp_name}' is not a valid experiment name"
|
||||
)
|
||||
|
||||
def on_diverged(refname: str, rev: str) -> bool:
|
||||
if repo.scm.get_ref(refname) == rev:
|
||||
@@ -42,33 +45,6 @@ def push(
|
||||
_push_cache(repo, exp_ref, **kwargs)
|
||||
|
||||
|
||||
def _get_exp_ref(repo, exp_name: str) -> ExpRefInfo:
|
||||
if exp_name.startswith("refs/"):
|
||||
return ExpRefInfo.from_ref(exp_name)
|
||||
|
||||
exp_refs = list(exp_refs_by_name(repo.scm, exp_name))
|
||||
if not exp_refs:
|
||||
raise InvalidArgumentError(
|
||||
f"'{exp_name}' is not a valid experiment name"
|
||||
)
|
||||
if len(exp_refs) > 1:
|
||||
cur_rev = repo.scm.get_rev()
|
||||
for info in exp_refs:
|
||||
if info.baseline_sha == cur_rev:
|
||||
return info
|
||||
msg = [
|
||||
(
|
||||
f"Ambiguous name '{exp_name}' refers to multiple "
|
||||
"experiments. Use full refname to push one of the "
|
||||
"following:"
|
||||
),
|
||||
"",
|
||||
]
|
||||
msg.extend([f"\t{info}" for info in exp_refs])
|
||||
raise InvalidArgumentError("\n".join(msg))
|
||||
return exp_refs[0]
|
||||
|
||||
|
||||
def _push_cache(repo, exp_ref, dvc_remote=None, jobs=None, run_cache=False):
|
||||
revs = list(exp_commits(repo.scm, [exp_ref]))
|
||||
logger.debug("dvc push experiment '%s'", exp_ref)
|
||||
|
||||
@@ -6,33 +6,47 @@ from dvc.repo import locked
|
||||
from dvc.repo.scm_context import scm_context
|
||||
from dvc.scm.base import RevError
|
||||
|
||||
from .base import EXPS_NAMESPACE, ExpRefInfo
|
||||
from .utils import exp_refs_by_name, remove_exp_refs
|
||||
from .utils import exp_refs, remove_exp_refs, resolve_exp_ref
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
@locked
|
||||
@scm_context
|
||||
def remove(repo, exp_names=None, queue=False, **kwargs):
|
||||
if not exp_names and not queue:
|
||||
def remove(
|
||||
repo,
|
||||
exp_names=None,
|
||||
queue=False,
|
||||
clear_all=False,
|
||||
remote=None,
|
||||
**kwargs,
|
||||
):
|
||||
if not any([exp_names, queue, clear_all]):
|
||||
return 0
|
||||
|
||||
removed = 0
|
||||
if queue:
|
||||
removed += len(repo.experiments.stash)
|
||||
repo.experiments.stash.clear()
|
||||
removed += _clear_stash(repo)
|
||||
if clear_all:
|
||||
removed += _clear_all(repo)
|
||||
|
||||
if exp_names:
|
||||
remained = _remove_commited_exps(repo, exp_names)
|
||||
remained = _remove_queued_exps(repo, remained)
|
||||
if remained:
|
||||
raise InvalidArgumentError(
|
||||
"'{}' is not a valid experiment".format(";".join(remained))
|
||||
)
|
||||
removed += len(exp_names) - len(remained)
|
||||
removed += _remove_exp_by_names(repo, remote, exp_names)
|
||||
return removed
|
||||
|
||||
|
||||
def _clear_stash(repo):
|
||||
removed = len(repo.experiments.stash)
|
||||
repo.experiments.stash.clear()
|
||||
return removed
|
||||
|
||||
|
||||
def _clear_all(repo):
|
||||
ref_infos = list(exp_refs(repo.scm))
|
||||
remove_exp_refs(repo.scm, ref_infos)
|
||||
return len(ref_infos)
|
||||
|
||||
|
||||
def _get_exp_stash_index(repo, ref_or_rev: str) -> Optional[int]:
|
||||
stash_revs = repo.experiments.stash_revs
|
||||
for _, ref_info in stash_revs.items():
|
||||
@@ -47,46 +61,24 @@ def _get_exp_stash_index(repo, ref_or_rev: str) -> Optional[int]:
|
||||
return None
|
||||
|
||||
|
||||
def _get_exp_ref(repo, exp_name: str) -> Optional[ExpRefInfo]:
|
||||
cur_rev = repo.scm.get_rev()
|
||||
if exp_name.startswith(EXPS_NAMESPACE):
|
||||
if repo.scm.get_ref(exp_name):
|
||||
return ExpRefInfo.from_ref(exp_name)
|
||||
else:
|
||||
exp_refs = list(exp_refs_by_name(repo.scm, exp_name))
|
||||
if exp_refs:
|
||||
return _get_ref(exp_refs, exp_name, cur_rev)
|
||||
return None
|
||||
|
||||
|
||||
def _get_ref(ref_infos, name, cur_rev) -> Optional[ExpRefInfo]:
|
||||
if len(ref_infos) > 1:
|
||||
for info in ref_infos:
|
||||
if info.baseline_sha == cur_rev:
|
||||
return info
|
||||
msg = [
|
||||
(
|
||||
f"Ambiguous name '{name}' refers to multiple "
|
||||
"experiments. Use full refname to remove one of "
|
||||
"the following:"
|
||||
)
|
||||
]
|
||||
msg.extend([f"\t{info}" for info in ref_infos])
|
||||
raise InvalidArgumentError("\n".join(msg))
|
||||
return ref_infos[0]
|
||||
|
||||
|
||||
def _remove_commited_exps(repo, refs: List[str]) -> List[str]:
|
||||
def _remove_commited_exps(
|
||||
repo, remote: Optional[str], exp_names: List[str]
|
||||
) -> List[str]:
|
||||
remain_list = []
|
||||
remove_list = []
|
||||
for ref in refs:
|
||||
ref_info = _get_exp_ref(repo, ref)
|
||||
for exp_name in exp_names:
|
||||
ref_info = resolve_exp_ref(repo.scm, exp_name, remote)
|
||||
|
||||
if ref_info:
|
||||
remove_list.append(ref_info)
|
||||
else:
|
||||
remain_list.append(ref)
|
||||
remain_list.append(exp_name)
|
||||
if remove_list:
|
||||
remove_exp_refs(repo.scm, remove_list)
|
||||
if not remote:
|
||||
remove_exp_refs(repo.scm, remove_list)
|
||||
else:
|
||||
for ref_info in remove_list:
|
||||
repo.scm.push_refspec(remote, None, str(ref_info))
|
||||
return remain_list
|
||||
|
||||
|
||||
@@ -99,3 +91,14 @@ def _remove_queued_exps(repo, refs_or_revs: List[str]) -> List[str]:
|
||||
else:
|
||||
repo.experiments.stash.drop(stash_index)
|
||||
return remain_list
|
||||
|
||||
|
||||
def _remove_exp_by_names(repo, remote, exp_names: List[str]) -> int:
|
||||
remained = _remove_commited_exps(repo, remote, exp_names)
|
||||
if not remote:
|
||||
remained = _remove_queued_exps(repo, remained)
|
||||
if remained:
|
||||
raise InvalidArgumentError(
|
||||
"'{}' is not a valid experiment".format(";".join(remained))
|
||||
)
|
||||
return len(exp_names) - len(remained)
|
||||
|
||||
@@ -1,5 +1,6 @@
|
||||
from typing import Generator, Iterable, Optional, Set
|
||||
|
||||
from dvc.exceptions import InvalidArgumentError
|
||||
from dvc.scm.git import Git
|
||||
|
||||
from .base import (
|
||||
@@ -115,3 +116,44 @@ def fix_exp_head(scm: "Git", ref: Optional[str]) -> Optional[str]:
|
||||
if name == "HEAD" and scm.get_ref(EXEC_BASELINE):
|
||||
return "".join((EXEC_BASELINE, tail))
|
||||
return ref
|
||||
|
||||
|
||||
def resolve_exp_ref(
|
||||
scm, exp_name: str, git_remote: Optional[str] = None
|
||||
) -> Optional[ExpRefInfo]:
|
||||
if exp_name.startswith("refs/"):
|
||||
return ExpRefInfo.from_ref(exp_name)
|
||||
|
||||
if git_remote:
|
||||
exp_ref_list = list(remote_exp_refs_by_name(scm, git_remote, exp_name))
|
||||
else:
|
||||
exp_ref_list = list(exp_refs_by_name(scm, exp_name))
|
||||
|
||||
if not exp_ref_list:
|
||||
return None
|
||||
if len(exp_ref_list) > 1:
|
||||
cur_rev = scm.get_rev()
|
||||
for info in exp_ref_list:
|
||||
if info.baseline_sha == cur_rev:
|
||||
return info
|
||||
if git_remote:
|
||||
msg = [
|
||||
(
|
||||
f"Ambiguous name '{exp_name}' refers to multiple "
|
||||
"experiments. Use full refname to push one of the "
|
||||
"following:"
|
||||
),
|
||||
"",
|
||||
]
|
||||
else:
|
||||
msg = [
|
||||
(
|
||||
f"Ambiguous name '{exp_name}' refers to multiple "
|
||||
f"experiments in '{git_remote}'. Use full refname to pull "
|
||||
"one of the following:"
|
||||
),
|
||||
"",
|
||||
]
|
||||
msg.extend([f"\t{info}" for info in exp_ref_list])
|
||||
raise InvalidArgumentError("\n".join(msg))
|
||||
return exp_ref_list[0]
|
||||
|
||||
+7
-3
@@ -2,6 +2,8 @@ import logging
|
||||
import os
|
||||
from typing import TYPE_CHECKING, List, Optional
|
||||
|
||||
from dvc.render.utils import render
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
if TYPE_CHECKING:
|
||||
@@ -15,10 +17,12 @@ def create_summary(out):
|
||||
|
||||
metrics, plots = out.repo.live.show(str(out.path_info))
|
||||
|
||||
html_path = out.path_info.with_suffix(".html")
|
||||
html_path = out.path_info.fspath + "_dvc_plots"
|
||||
|
||||
out.repo.plots.write_html(html_path, plots, metrics)
|
||||
logger.info(f"\nfile://{os.path.abspath(html_path)}")
|
||||
index_path = render(
|
||||
out.repo, plots, metrics=metrics, path=html_path, refresh_seconds=5
|
||||
)
|
||||
logger.info(f"\nfile://{os.path.abspath(index_path)}")
|
||||
|
||||
|
||||
def summary_path_info(out: "Output") -> Optional["PathInfo"]:
|
||||
|
||||
+11
-138
@@ -8,8 +8,7 @@ from typing import TYPE_CHECKING, Callable, Dict, List, Optional
|
||||
from funcy import cached_property, first, project
|
||||
|
||||
from dvc.exceptions import DvcException
|
||||
from dvc.repo.plots.data import PlotMetricTypeError
|
||||
from dvc.types import StrPath
|
||||
from dvc.render.vega import PlotMetricTypeError
|
||||
from dvc.utils import (
|
||||
error_handler,
|
||||
errored_revisions,
|
||||
@@ -113,58 +112,33 @@ class Plots:
|
||||
props = props or {}
|
||||
|
||||
for path, repo_path in plot_files:
|
||||
res[repo_path] = {"props": rev_props}
|
||||
joined_props = {**rev_props, **props}
|
||||
res[repo_path] = {"props": joined_props}
|
||||
res[repo_path].update(
|
||||
parse(
|
||||
fs,
|
||||
path,
|
||||
rev_props=rev_props,
|
||||
props=props,
|
||||
props=joined_props,
|
||||
onerror=onerror,
|
||||
)
|
||||
)
|
||||
return res
|
||||
|
||||
@staticmethod
|
||||
def render(data, revs=None, props=None, templates=None):
|
||||
"""Renders plots"""
|
||||
props = props or {}
|
||||
|
||||
# Merge data by plot file and apply overriding props
|
||||
plots = _prepare_plots(data, revs, props)
|
||||
|
||||
result = {}
|
||||
for datafile, desc in plots.items():
|
||||
rendered = _render(
|
||||
datafile,
|
||||
desc["data"],
|
||||
desc["props"],
|
||||
templates,
|
||||
)
|
||||
if rendered:
|
||||
result[datafile] = rendered
|
||||
|
||||
return result
|
||||
|
||||
def show(
|
||||
self,
|
||||
targets: List[str] = None,
|
||||
revs=None,
|
||||
props=None,
|
||||
templates=None,
|
||||
recursive=False,
|
||||
onerror=None,
|
||||
):
|
||||
if onerror is None:
|
||||
onerror = onerror_collect
|
||||
data = self.collect(
|
||||
|
||||
return self.collect(
|
||||
targets, revs, recursive, onerror=onerror, props=props
|
||||
)
|
||||
|
||||
if templates is None:
|
||||
templates = self.templates
|
||||
return self.render(data, revs, props, templates)
|
||||
|
||||
def diff(self, *args, **kwargs):
|
||||
from .diff import diff
|
||||
|
||||
@@ -217,26 +191,6 @@ class Plots:
|
||||
|
||||
return PlotTemplates(self.repo.dvc_dir)
|
||||
|
||||
def write_html(
|
||||
self,
|
||||
path: StrPath,
|
||||
plots: Dict[str, Dict],
|
||||
metrics: Optional[Dict[str, Dict]] = None,
|
||||
html_template_path: Optional[StrPath] = None,
|
||||
):
|
||||
if not html_template_path:
|
||||
html_template_path = self.repo.config.get("plots", {}).get(
|
||||
"html_template", None
|
||||
)
|
||||
if html_template_path and not os.path.isabs(html_template_path):
|
||||
html_template_path = os.path.join(
|
||||
self.repo.dvc_dir, html_template_path
|
||||
)
|
||||
|
||||
from dvc.utils.html import write
|
||||
|
||||
write(path, plots, metrics, html_template_path)
|
||||
|
||||
|
||||
def _is_plot(out: "Output") -> bool:
|
||||
return bool(out.plot) or bool(out.live)
|
||||
@@ -264,17 +218,19 @@ def _collect_plots(
|
||||
|
||||
|
||||
@error_handler
|
||||
def parse(fs, path, props=None, rev_props=None, **kwargs):
|
||||
def parse(fs, path, props=None, **kwargs):
|
||||
props = props or {}
|
||||
rev_props = rev_props or {}
|
||||
_, extension = os.path.splitext(path)
|
||||
if extension in (".tsv", ".csv"):
|
||||
header = {**rev_props, **props}.get("header", True)
|
||||
header = props.get("header", True)
|
||||
if extension == ".csv":
|
||||
return _load_sv(path=path, fs=fs, delimiter=",", header=header)
|
||||
return _load_sv(path=path, fs=fs, delimiter="\t", header=header)
|
||||
if extension in LOADERS or extension in (".yml", ".yaml"):
|
||||
return LOADERS[extension](path=path, fs=fs)
|
||||
if extension in (".jpeg", ".jpg", ".gif", ".png"):
|
||||
with fs.open(path, "rb") as fd:
|
||||
return fd.read()
|
||||
raise PlotMetricTypeError(path)
|
||||
|
||||
|
||||
@@ -291,89 +247,6 @@ def _plot_props(out: "Output") -> Dict:
|
||||
return project(out.plot, PLOT_PROPS)
|
||||
|
||||
|
||||
def _prepare_plots(data, revs, props):
|
||||
"""Groups data by plot file.
|
||||
|
||||
Also resolves props conflicts between revs and applies global props.
|
||||
"""
|
||||
# we go in order revs are supplied on props conflict first ones win.
|
||||
revs = iter(data) if revs is None else revs
|
||||
|
||||
plots, props_revs = {}, {}
|
||||
for rev in revs:
|
||||
# Asked for revision without data
|
||||
if rev not in data:
|
||||
continue
|
||||
|
||||
for datafile, desc in data[rev].get("data", {}).items():
|
||||
# We silently skip on an absent data file,
|
||||
# see also try/except/pass in .collect()
|
||||
if "data" not in desc:
|
||||
continue
|
||||
|
||||
# props from command line overwrite plot props from out definition
|
||||
full_props = {**desc["props"], **props}
|
||||
|
||||
if datafile in plots:
|
||||
saved = plots[datafile]
|
||||
if saved["props"] != full_props:
|
||||
logger.warning(
|
||||
f"Inconsistent plot props for '{datafile}' in "
|
||||
f"'{props_revs[datafile]}' and '{rev}'. "
|
||||
f"Going to use ones from '{props_revs[datafile]}'"
|
||||
)
|
||||
|
||||
saved["data"][rev] = desc["data"]
|
||||
else:
|
||||
plots[datafile] = {
|
||||
"props": full_props,
|
||||
"data": {rev: desc["data"]},
|
||||
}
|
||||
# Save rev we got props from
|
||||
props_revs[datafile] = rev
|
||||
|
||||
return plots
|
||||
|
||||
|
||||
def _render(datafile, datas, props, templates):
|
||||
from .data import PlotData, plot_data
|
||||
|
||||
# Copy it to not modify a passed value
|
||||
props = props.copy()
|
||||
|
||||
# Add x and y to fields if set
|
||||
fields = props.get("fields")
|
||||
if fields is not None:
|
||||
fields = {*fields, props.get("x"), props.get("y")} - {None}
|
||||
|
||||
template = templates.load(props.get("template") or "default")
|
||||
|
||||
# If x is not set add index field
|
||||
if not props.get("x") and template.has_anchor("x"):
|
||||
props["append_index"] = True
|
||||
props["x"] = PlotData.INDEX_FIELD
|
||||
|
||||
# Parse all data, preprocess it and collect as a list of dicts
|
||||
data = []
|
||||
for rev, unstructured_data in datas.items():
|
||||
rev_data = plot_data(datafile, rev, unstructured_data).to_datapoints(
|
||||
fields=fields,
|
||||
path=props.get("path"),
|
||||
append_index=props.get("append_index", False),
|
||||
)
|
||||
data.extend(rev_data)
|
||||
|
||||
# If y is not set then use last field not used yet
|
||||
if data:
|
||||
if not props.get("y") and template.has_anchor("y"):
|
||||
fields = list(first(data))
|
||||
skip = (PlotData.REVISION_FIELD, props.get("x"))
|
||||
props["y"] = first(f for f in reversed(fields) if f not in skip)
|
||||
|
||||
return template.render(data, props=props)
|
||||
return None
|
||||
|
||||
|
||||
def _load_sv(path, fs, delimiter=",", header=True):
|
||||
with fs.open(path, "r") as fd:
|
||||
content = fd.read()
|
||||
|
||||
@@ -1,138 +0,0 @@
|
||||
import os
|
||||
from copy import copy
|
||||
|
||||
from funcy import first
|
||||
|
||||
from dvc.exceptions import DvcException
|
||||
from dvc.utils.serialize import ParseError
|
||||
|
||||
|
||||
class PlotMetricTypeError(DvcException):
|
||||
def __init__(self, file):
|
||||
super().__init__(
|
||||
"'{}' - file type error\n"
|
||||
"Only JSON, YAML, CSV and TSV formats are supported.".format(file)
|
||||
)
|
||||
|
||||
|
||||
class PlotDataStructureError(DvcException):
|
||||
def __init__(self):
|
||||
super().__init__(
|
||||
"Plot data extraction failed. Please see "
|
||||
"https://man.dvc.org/plot for supported data formats."
|
||||
)
|
||||
|
||||
|
||||
class PlotParsingError(ParseError):
|
||||
def __init__(self, path, revision):
|
||||
self.path = path
|
||||
self.revision = revision
|
||||
|
||||
super().__init__(path, f"revision: '{revision}'")
|
||||
|
||||
|
||||
def plot_data(filename, revision, content):
|
||||
_, extension = os.path.splitext(filename.lower())
|
||||
if extension in (".json", ".yaml"):
|
||||
return DictData(filename, revision, content)
|
||||
if extension in (".csv", ".tsv"):
|
||||
return ListData(filename, revision, content)
|
||||
raise PlotMetricTypeError(filename)
|
||||
|
||||
|
||||
def _filter_fields(data_points, filename, revision, fields=None, **kwargs):
|
||||
if not fields:
|
||||
return data_points
|
||||
assert isinstance(fields, set)
|
||||
|
||||
new_data = []
|
||||
for data_point in data_points:
|
||||
new_dp = copy(data_point)
|
||||
|
||||
keys = set(data_point.keys())
|
||||
if keys & fields != fields:
|
||||
raise DvcException(
|
||||
"Could not find fields: '{}' for '{}' at '{}'.".format(
|
||||
", ".join(fields), filename, revision
|
||||
)
|
||||
)
|
||||
|
||||
to_del = keys - fields
|
||||
for key in to_del:
|
||||
del new_dp[key]
|
||||
new_data.append(new_dp)
|
||||
return new_data
|
||||
|
||||
|
||||
def _lists(dictionary):
|
||||
for _, value in dictionary.items():
|
||||
if isinstance(value, dict):
|
||||
yield from _lists(value)
|
||||
elif isinstance(value, list):
|
||||
yield value
|
||||
|
||||
|
||||
def _find_data(data, fields=None, **kwargs):
|
||||
if not isinstance(data, dict):
|
||||
return data
|
||||
|
||||
if not fields:
|
||||
# just look for first list of dicts
|
||||
fields = set()
|
||||
|
||||
for lst in _lists(data):
|
||||
if (
|
||||
all(isinstance(dp, dict) for dp in lst)
|
||||
and set(first(lst).keys()) & fields == fields
|
||||
):
|
||||
return lst
|
||||
raise PlotDataStructureError()
|
||||
|
||||
|
||||
def _append_index(data_points, append_index=False, **kwargs):
|
||||
if not append_index or PlotData.INDEX_FIELD in first(data_points).keys():
|
||||
return data_points
|
||||
|
||||
for index, data_point in enumerate(data_points):
|
||||
data_point[PlotData.INDEX_FIELD] = index
|
||||
return data_points
|
||||
|
||||
|
||||
def _append_revision(data_points, revision, **kwargs):
|
||||
for data_point in data_points:
|
||||
data_point[PlotData.REVISION_FIELD] = revision
|
||||
return data_points
|
||||
|
||||
|
||||
class PlotData:
|
||||
REVISION_FIELD = "rev"
|
||||
INDEX_FIELD = "step"
|
||||
|
||||
def __init__(self, filename, revision, content, **kwargs):
|
||||
self.filename = filename
|
||||
self.revision = revision
|
||||
self.content = content
|
||||
|
||||
def _processors(self):
|
||||
return [_filter_fields, _append_index, _append_revision]
|
||||
|
||||
def to_datapoints(self, **kwargs):
|
||||
data = self.content
|
||||
|
||||
for data_proc in self._processors():
|
||||
data = data_proc(
|
||||
data, filename=self.filename, revision=self.revision, **kwargs
|
||||
)
|
||||
return data
|
||||
|
||||
|
||||
class DictData(PlotData):
|
||||
# For files usually parsed as dicts: eg JSON, Yaml
|
||||
def _processors(self):
|
||||
parent_processors = super()._processors()
|
||||
return [_find_data] + parent_processors
|
||||
|
||||
|
||||
class ListData(PlotData):
|
||||
# For files parsed as list: CSV, TSV
|
||||
pass
|
||||
@@ -49,6 +49,7 @@ OUT_PSTAGE_DETAILED_SCHEMA = {
|
||||
Output.PARAM_PERSIST: bool,
|
||||
Output.PARAM_CHECKPOINT: bool,
|
||||
Output.PARAM_DESC: str,
|
||||
Output.PARAM_REMOTE: str,
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
@@ -47,6 +47,15 @@ class InvalidRemoteSCMRepo(SCMError):
|
||||
super().__init__(msg)
|
||||
|
||||
|
||||
class GitAuthError(SCMError):
|
||||
def __init__(self, url: str):
|
||||
super().__init__(
|
||||
f"HTTP Git authentication is not supported: '{url}'"
|
||||
"\nSee https://dvc.org/doc//user-guide/"
|
||||
"troubleshooting#git-auth"
|
||||
)
|
||||
|
||||
|
||||
class Base:
|
||||
"""Base class for source control management driver implementations."""
|
||||
|
||||
|
||||
@@ -20,7 +20,7 @@ from funcy import cached_property
|
||||
|
||||
from dvc.path_info import PathInfo
|
||||
from dvc.progress import Tqdm
|
||||
from dvc.scm.base import InvalidRemoteSCMRepo, SCMError
|
||||
from dvc.scm.base import GitAuthError, InvalidRemoteSCMRepo, SCMError
|
||||
from dvc.utils import relpath
|
||||
|
||||
from ..objects import GitObject
|
||||
@@ -39,7 +39,7 @@ class DulwichObject(GitObject):
|
||||
self.repo = repo
|
||||
self._name = name
|
||||
self._mode = mode
|
||||
self.sha = sha
|
||||
self._sha = sha
|
||||
|
||||
def open(self, mode: str = "r", encoding: str = None):
|
||||
if not encoding:
|
||||
@@ -68,6 +68,14 @@ class DulwichObject(GitObject):
|
||||
self.repo, entry.path.decode(), entry.mode, entry.sha
|
||||
)
|
||||
|
||||
@property
|
||||
def size(self) -> int:
|
||||
return len(self.repo[self.sha].as_raw_string())
|
||||
|
||||
@property
|
||||
def sha(self) -> str:
|
||||
return self._sha
|
||||
|
||||
|
||||
class DulwichBackend(BaseGitBackend): # pylint:disable=abstract-method
|
||||
"""Dulwich Git backend."""
|
||||
@@ -347,7 +355,7 @@ class DulwichBackend(BaseGitBackend): # pylint:disable=abstract-method
|
||||
yield os.fsdecode(key)
|
||||
|
||||
def iter_remote_refs(self, url: str, base: Optional[str] = None):
|
||||
from dulwich.client import get_transport_and_path
|
||||
from dulwich.client import HTTPUnauthorized, get_transport_and_path
|
||||
from dulwich.errors import NotGitRepository
|
||||
from dulwich.porcelain import get_remote_repo
|
||||
|
||||
@@ -368,6 +376,8 @@ class DulwichBackend(BaseGitBackend): # pylint:disable=abstract-method
|
||||
yield from (os.fsdecode(ref) for ref in client.get_refs(path))
|
||||
except NotGitRepository as exc:
|
||||
raise InvalidRemoteSCMRepo(url) from exc
|
||||
except HTTPUnauthorized:
|
||||
raise GitAuthError(url)
|
||||
|
||||
def get_refs_containing(self, rev: str, pattern: Optional[str] = None):
|
||||
raise NotImplementedError
|
||||
@@ -380,7 +390,7 @@ class DulwichBackend(BaseGitBackend): # pylint:disable=abstract-method
|
||||
force: bool = False,
|
||||
on_diverged: Optional[Callable[[str, str], bool]] = None,
|
||||
):
|
||||
from dulwich.client import get_transport_and_path
|
||||
from dulwich.client import HTTPUnauthorized, get_transport_and_path
|
||||
from dulwich.errors import NotGitRepository, SendPackError
|
||||
from dulwich.porcelain import (
|
||||
DivergedBranches,
|
||||
@@ -399,9 +409,11 @@ class DulwichBackend(BaseGitBackend): # pylint:disable=abstract-method
|
||||
) from exc
|
||||
|
||||
def update_refs(refs):
|
||||
from dulwich.objects import ZERO_SHA
|
||||
|
||||
new_refs = {}
|
||||
for ref, value in zip(dest_refs, values):
|
||||
if ref in refs:
|
||||
if ref in refs and value != ZERO_SHA:
|
||||
local_sha = self.repo.refs[ref]
|
||||
remote_sha = refs[ref]
|
||||
try:
|
||||
@@ -437,6 +449,8 @@ class DulwichBackend(BaseGitBackend): # pylint:disable=abstract-method
|
||||
)
|
||||
except (NotGitRepository, SendPackError) as exc:
|
||||
raise SCMError("Git failed to push '{src}' to '{url}'") from exc
|
||||
except HTTPUnauthorized:
|
||||
raise GitAuthError(url)
|
||||
|
||||
def _push_dest_refs(
|
||||
self, src: Optional[str], dest: str
|
||||
|
||||
@@ -92,6 +92,14 @@ class GitPythonObject(GitObject):
|
||||
for obj in self.obj:
|
||||
yield GitPythonObject(obj)
|
||||
|
||||
@property
|
||||
def size(self) -> int:
|
||||
return self.obj.size
|
||||
|
||||
@property
|
||||
def sha(self) -> str:
|
||||
return self.obj.hexsha
|
||||
|
||||
|
||||
class GitPythonBackend(BaseGitBackend): # pylint:disable=abstract-method
|
||||
"""git-python Git backend."""
|
||||
|
||||
@@ -58,6 +58,14 @@ class Pygit2Object(GitObject):
|
||||
return stat.S_IFDIR
|
||||
return self.obj.filemode
|
||||
|
||||
@property
|
||||
def size(self) -> int:
|
||||
return len(self.obj.read_raw())
|
||||
|
||||
@property
|
||||
def sha(self) -> str:
|
||||
return self.obj.hex
|
||||
|
||||
def scandir(self) -> Iterable["Pygit2Object"]:
|
||||
for entry in self.obj: # noqa: B301
|
||||
yield Pygit2Object(entry)
|
||||
|
||||
+17
-3
@@ -1,4 +1,3 @@
|
||||
import os
|
||||
import stat
|
||||
from abc import ABC, abstractmethod
|
||||
from dataclasses import dataclass
|
||||
@@ -44,6 +43,16 @@ class GitObject(ABC):
|
||||
def issubmodule(self) -> bool:
|
||||
return S_ISGITLINK(self.mode)
|
||||
|
||||
@property
|
||||
@abstractmethod
|
||||
def size(self) -> int:
|
||||
pass
|
||||
|
||||
@property
|
||||
@abstractmethod
|
||||
def sha(self) -> str:
|
||||
pass
|
||||
|
||||
|
||||
class GitTrie:
|
||||
def __init__(self, tree: GitObject, rev: str):
|
||||
@@ -116,9 +125,14 @@ class GitTrie:
|
||||
if not topdown:
|
||||
yield top, dirs, nondirs
|
||||
|
||||
def stat(self, key: tuple) -> os.stat_result:
|
||||
def info(self, key: tuple) -> dict:
|
||||
obj = self.trie[key]
|
||||
return os.stat_result((obj.mode, 0, 0, 0, 0, 0, 0, 0, 0, 0))
|
||||
return {
|
||||
"size": obj.size,
|
||||
"type": "directory" if stat.S_ISDIR(obj.mode) else "file",
|
||||
"sha": obj.sha,
|
||||
"mode": obj.mode,
|
||||
}
|
||||
|
||||
|
||||
@dataclass
|
||||
|
||||
@@ -28,6 +28,7 @@ PARAM_PLOT = Output.PARAM_PLOT
|
||||
PARAM_PERSIST = Output.PARAM_PERSIST
|
||||
PARAM_CHECKPOINT = Output.PARAM_CHECKPOINT
|
||||
PARAM_DESC = Output.PARAM_DESC
|
||||
PARAM_REMOTE = Output.PARAM_REMOTE
|
||||
|
||||
DEFAULT_PARAMS_FILE = ParamsDependency.DEFAULT_PARAMS_FILE
|
||||
|
||||
@@ -52,6 +53,8 @@ def _get_flags(out):
|
||||
yield from out.plot.items()
|
||||
if out.live and isinstance(out.live, dict):
|
||||
yield from out.live.items()
|
||||
if out.remote:
|
||||
yield PARAM_REMOTE, out.remote
|
||||
|
||||
|
||||
def _serialize_out(out):
|
||||
|
||||
+6
-7
@@ -53,7 +53,6 @@ class State(StateBase): # pylint: disable=too-many-instance-attributes
|
||||
self.tmp_dir = tmp_dir
|
||||
self.root_dir = root_dir
|
||||
self.dvcignore = dvcignore
|
||||
self.fs = LocalFileSystem()
|
||||
|
||||
if not tmp_dir:
|
||||
return
|
||||
@@ -85,7 +84,7 @@ class State(StateBase): # pylint: disable=too-many-instance-attributes
|
||||
assert isinstance(hash_info, HashInfo)
|
||||
assert os.path.exists(path_info)
|
||||
|
||||
mtime, size = get_mtime_and_size(path_info, self.fs, self.dvcignore)
|
||||
mtime, size = get_mtime_and_size(path_info, fs, self.dvcignore)
|
||||
inode = get_inode(path_info)
|
||||
|
||||
logger.debug(
|
||||
@@ -121,7 +120,7 @@ class State(StateBase): # pylint: disable=too-many-instance-attributes
|
||||
if not os.path.exists(path):
|
||||
return None
|
||||
|
||||
mtime, size = get_mtime_and_size(path, self.fs, self.dvcignore)
|
||||
mtime, size = get_mtime_and_size(path, fs, self.dvcignore)
|
||||
inode = get_inode(path)
|
||||
|
||||
value = self.md5s.get(inode)
|
||||
@@ -143,10 +142,10 @@ class State(StateBase): # pylint: disable=too-many-instance-attributes
|
||||
|
||||
assert isinstance(path_info, str) or path_info.scheme == "local"
|
||||
|
||||
if not self.fs.exists(path_info):
|
||||
if not fs.exists(path_info):
|
||||
return
|
||||
|
||||
mtime, _ = get_mtime_and_size(path_info, self.fs, self.dvcignore)
|
||||
mtime, _ = get_mtime_and_size(path_info, fs, self.dvcignore)
|
||||
inode = get_inode(path_info)
|
||||
relative_path = relpath(path_info, self.root_dir)
|
||||
|
||||
@@ -168,11 +167,11 @@ class State(StateBase): # pylint: disable=too-many-instance-attributes
|
||||
for relative_path in ref:
|
||||
path = os.path.join(self.root_dir, relative_path)
|
||||
|
||||
if path in used or not self.fs.exists(path):
|
||||
if path in used or not fs.exists(path):
|
||||
continue
|
||||
|
||||
inode = get_inode(path)
|
||||
mtime, _ = get_mtime_and_size(path, self.fs, self.dvcignore)
|
||||
mtime, _ = get_mtime_and_size(path, fs, self.dvcignore)
|
||||
|
||||
if ref[relative_path] == (inode, mtime):
|
||||
logger.debug("Removing '%s' as unused link.", path)
|
||||
|
||||
+21
-15
@@ -47,22 +47,22 @@ def get_mtime_and_size(path, fs, dvcignore=None):
|
||||
walk_iterator = fs.walk_files(path)
|
||||
for file_path in walk_iterator:
|
||||
try:
|
||||
stats = fs.stat(file_path)
|
||||
stats = fs.info(file_path)
|
||||
except OSError as exc:
|
||||
# NOTE: broken symlink case.
|
||||
if exc.errno != errno.ENOENT:
|
||||
raise
|
||||
continue
|
||||
size += stats.st_size
|
||||
files_mtimes[os.fspath(file_path)] = stats.st_mtime
|
||||
size += stats["size"]
|
||||
files_mtimes[os.fspath(file_path)] = stats["mtime"]
|
||||
|
||||
# We track file changes and moves, which cannot be detected with simply
|
||||
# max(mtime(f) for f in non_ignored_files)
|
||||
mtime = dict_md5(files_mtimes)
|
||||
else:
|
||||
base_stat = fs.stat(path)
|
||||
size = base_stat.st_size
|
||||
mtime = base_stat.st_mtime
|
||||
base_stat = fs.info(path)
|
||||
size = base_stat["size"]
|
||||
mtime = base_stat["mtime"]
|
||||
mtime = int(nanotime.timestamp(mtime))
|
||||
|
||||
return str(mtime), size
|
||||
@@ -193,33 +193,39 @@ def makedirs(path, exist_ok=False, mode=None):
|
||||
logger.trace("failed to chmod '%o' '%s'", mode, path, exc_info=True)
|
||||
|
||||
|
||||
def copyfile(src, dest, no_progress_bar=False, name=None):
|
||||
def copyfile(src, dest, callback=None, no_progress_bar=False, name=None):
|
||||
"""Copy file with progress bar"""
|
||||
from dvc.progress import Tqdm
|
||||
|
||||
name = name if name else os.path.basename(dest)
|
||||
total = os.stat(src).st_size
|
||||
|
||||
if os.path.isdir(dest):
|
||||
dest = os.path.join(dest, os.path.basename(src))
|
||||
|
||||
if callback:
|
||||
callback.set_size(total)
|
||||
|
||||
try:
|
||||
System.reflink(src, dest)
|
||||
except DvcException:
|
||||
from dvc.progress import tdqm_or_callback_wrapped
|
||||
|
||||
with open(src, "rb") as fsrc, open(dest, "wb+") as fdest:
|
||||
with Tqdm.wrapattr(
|
||||
with tdqm_or_callback_wrapped(
|
||||
fdest,
|
||||
"write",
|
||||
desc=name,
|
||||
total,
|
||||
callback=callback,
|
||||
disable=no_progress_bar,
|
||||
total=total,
|
||||
bytes=True,
|
||||
) as fdest_wrapped:
|
||||
desc=name,
|
||||
) as wrapped:
|
||||
while True:
|
||||
buf = fsrc.read(LOCAL_CHUNK_SIZE)
|
||||
if not buf:
|
||||
break
|
||||
fdest_wrapped.write(buf)
|
||||
wrapped.write(buf)
|
||||
|
||||
if callback:
|
||||
callback.absolute_update(total)
|
||||
|
||||
|
||||
def copy_fobj_to_file(fsrc, dest):
|
||||
|
||||
+4
-2
@@ -24,13 +24,15 @@ def open_url(url, mode="r", encoding=None, **iter_opts):
|
||||
|
||||
|
||||
@contextmanager
|
||||
def iter_url(url, chunk_size=io.DEFAULT_BUFFER_SIZE):
|
||||
def iter_url(url, chunk_size=io.DEFAULT_BUFFER_SIZE, auth=None):
|
||||
"""Iterate over chunks requested from url."""
|
||||
import requests
|
||||
|
||||
def request(headers=None):
|
||||
the_url = url() if callable(url) else url
|
||||
response = requests.get(the_url, stream=True, headers=headers)
|
||||
response = requests.get(
|
||||
the_url, stream=True, headers=headers, auth=auth
|
||||
)
|
||||
if response.status_code == 404:
|
||||
raise FileNotFoundError(f"Can't open {the_url}")
|
||||
response.raise_for_status()
|
||||
|
||||
@@ -14,6 +14,13 @@ LOADERS.update(
|
||||
{".toml": load_toml, ".json": load_json, ".py": load_py} # noqa: F405
|
||||
)
|
||||
|
||||
DUMPERS: DefaultDict[str, DumperFn] = defaultdict( # noqa: F405
|
||||
lambda: dump_yaml # noqa: F405
|
||||
)
|
||||
DUMPERS.update(
|
||||
{".toml": dump_toml, ".json": dump_json, ".py": dump_py} # noqa: F405
|
||||
)
|
||||
|
||||
MODIFIERS: DefaultDict[str, ModifierFn] = defaultdict( # noqa: F405
|
||||
lambda: modify_yaml # noqa: F405
|
||||
)
|
||||
|
||||
@@ -63,10 +63,16 @@ def _load_data(path: "AnyPath", parser: ParserFn, fs: "BaseFileSystem" = None):
|
||||
return parser(fd.read(), path)
|
||||
|
||||
|
||||
def _dump_data(path, data: Any, dumper: DumperFn, fs: "BaseFileSystem" = None):
|
||||
def _dump_data(
|
||||
path,
|
||||
data: Any,
|
||||
dumper: DumperFn,
|
||||
fs: "BaseFileSystem" = None,
|
||||
**dumper_args,
|
||||
):
|
||||
open_fn = fs.open if fs else open
|
||||
with open_fn(path, "w+", encoding="utf-8") as fd: # type: ignore
|
||||
dumper(data, fd)
|
||||
dumper(data, fd, **dumper_args)
|
||||
|
||||
|
||||
@contextmanager
|
||||
|
||||
@@ -19,8 +19,8 @@ def parse_json(text, path, **kwargs):
|
||||
return json.loads(text, **kwargs) or {}
|
||||
|
||||
|
||||
def dump_json(path, data, fs=None):
|
||||
return _dump_data(path, data, dumper=json.dump, fs=fs)
|
||||
def dump_json(path, data, fs=None, **kwargs):
|
||||
return _dump_data(path, data, dumper=json.dump, fs=fs, **kwargs)
|
||||
|
||||
|
||||
@contextmanager
|
||||
|
||||
@@ -40,8 +40,8 @@ def _dump(data, stream):
|
||||
return toml.dump(data, stream, encoder=toml.TomlPreserveCommentEncoder())
|
||||
|
||||
|
||||
def dump_toml(path, data, fs=None):
|
||||
return _dump_data(path, data, dumper=_dump, fs=fs)
|
||||
def dump_toml(path, data, fs=None, **kwargs):
|
||||
return _dump_data(path, data, dumper=_dump, fs=fs, **kwargs)
|
||||
|
||||
|
||||
@contextmanager
|
||||
|
||||
@@ -23,17 +23,10 @@ def load_yaml(path, fs=None):
|
||||
def parse_yaml(text, path, typ="safe"):
|
||||
from ruamel.yaml import YAML
|
||||
from ruamel.yaml import YAMLError as _YAMLError
|
||||
from ruamel.yaml.constructor import DuplicateKeyError
|
||||
|
||||
yaml = YAML(typ=typ)
|
||||
try:
|
||||
with reraise(_YAMLError, YAMLFileCorruptedError(path)):
|
||||
return yaml.load(text) or {}
|
||||
except DuplicateKeyError as exc:
|
||||
# NOTE: unfortunately this one doesn't inherit from YAMLError, so we
|
||||
# have to catch it by-hand. See
|
||||
# https://yaml.readthedocs.io/en/latest/api.html#duplicate-keys
|
||||
raise YAMLError(path, exc.problem)
|
||||
with reraise(_YAMLError, YAMLFileCorruptedError(path)):
|
||||
return yaml.load(text) or {}
|
||||
|
||||
|
||||
def parse_yaml_for_update(text, path):
|
||||
@@ -65,8 +58,8 @@ def _dump(data, stream):
|
||||
return yaml.dump(data, stream)
|
||||
|
||||
|
||||
def dump_yaml(path, data, fs=None):
|
||||
return _dump_data(path, data, dumper=_dump, fs=fs)
|
||||
def dump_yaml(path, data, fs=None, **kwargs):
|
||||
return _dump_data(path, data, dumper=_dump, fs=fs, **kwargs)
|
||||
|
||||
|
||||
def loads_yaml(s, typ="safe"):
|
||||
|
||||
@@ -0,0 +1,34 @@
|
||||
from concurrent import futures
|
||||
from itertools import islice
|
||||
from typing import Any, Callable, Iterable, Iterator, Set, TypeVar
|
||||
|
||||
_T = TypeVar("_T")
|
||||
|
||||
|
||||
class ThreadPoolExecutor(futures.ThreadPoolExecutor):
|
||||
_max_workers: int
|
||||
|
||||
@property
|
||||
def max_workers(self) -> int:
|
||||
return self._max_workers
|
||||
|
||||
def imap_unordered(
|
||||
self, fn: Callable[..., _T], *iterables: Iterable[Any]
|
||||
) -> Iterator[_T]:
|
||||
"""Lazier version of map that does not preserve ordering of results.
|
||||
|
||||
It does not create all the futures at once to reduce memory usage.
|
||||
"""
|
||||
|
||||
def create_taskset(n: int) -> Set[futures.Future]:
|
||||
return {self.submit(fn, *args) for args in islice(it, n)}
|
||||
|
||||
it = zip(*iterables)
|
||||
tasks = create_taskset(self.max_workers * 5)
|
||||
while tasks:
|
||||
done, tasks = futures.wait(
|
||||
tasks, return_when=futures.FIRST_COMPLETED
|
||||
)
|
||||
for fut in done:
|
||||
yield fut.result()
|
||||
tasks.update(create_taskset(len(done)))
|
||||
+1
-1
@@ -6,7 +6,7 @@
|
||||
import os
|
||||
import subprocess
|
||||
|
||||
_BASE_VERSION = "2.6.3"
|
||||
_BASE_VERSION = "2.7.4"
|
||||
|
||||
|
||||
def _generate_version(base_version):
|
||||
|
||||
@@ -0,0 +1,3 @@
|
||||
adlfs==2021.9.1
|
||||
azure-identity>=1.4.0
|
||||
knack
|
||||
@@ -0,0 +1,46 @@
|
||||
# See https://github.com/pyinstaller/pyinstaller/issues/1945
|
||||
ply>=3.9
|
||||
colorama>=0.3.9
|
||||
configobj>=5.0.6
|
||||
gitpython>3
|
||||
dulwich>=0.20.23
|
||||
pygit2>=1.5.0
|
||||
setuptools>=34.0.0
|
||||
nanotime>=0.5.2
|
||||
pyasn1>=0.4.1
|
||||
voluptuous>=0.11.7
|
||||
requests>=2.22.0
|
||||
# See https://github.com/bdcht/grandalf/issues/26
|
||||
grandalf==0.6
|
||||
distro>=1.3.0
|
||||
appdirs>=1.4.3
|
||||
ruamel.yaml>=0.17.11
|
||||
toml>=0.10.1
|
||||
funcy>=1.14
|
||||
pathspec>=0.6.0,<0.9.0
|
||||
shortuuid>=0.5.0
|
||||
tqdm>=4.45.0,<5
|
||||
packaging>=19.0
|
||||
zc.lockfile>=1.2.1
|
||||
flufl.lock>=3.2,<4
|
||||
win-unicode-console>=0.5; sys_platform == 'win32'
|
||||
pywin32>=225; sys_platform == 'win32' and python_version < '3.10'
|
||||
networkx>=2.5
|
||||
psutil>=5.8.0
|
||||
pydot>=1.2.4
|
||||
speedcopy>=2.0.1; python_version < '3.8' and sys_platform == 'win32'
|
||||
dataclasses==0.7; python_version < '3.7'
|
||||
importlib-metadata>=1.4; python_version < '3.8'
|
||||
flatten_dict>=0.4.1,<1
|
||||
tabulate>=0.8.7
|
||||
pygtrie>=2.3.2
|
||||
dpath>=2.0.2,<3
|
||||
shtab>=1.3.4,<2
|
||||
rich>=10.0.0
|
||||
dictdiffer>=0.8.1
|
||||
python-benedict>=0.21.1
|
||||
pyparsing==2.4.7
|
||||
typing_extensions>=3.10.0.2
|
||||
fsspec[http]>=2021.8.1
|
||||
aiohttp-retry==2.4.5
|
||||
diskcache>=5.2.1
|
||||
@@ -0,0 +1 @@
|
||||
pydrive2[fsspec]>=1.9.4
|
||||
@@ -0,0 +1 @@
|
||||
gcsfs==2021.8.1
|
||||
@@ -0,0 +1 @@
|
||||
pyarrow>=2.0.0; python_version < '3.10'
|
||||
@@ -0,0 +1 @@
|
||||
ossfs==2021.8.0
|
||||
@@ -0,0 +1,2 @@
|
||||
s3fs==2021.8.1
|
||||
aiobotocore[boto3]>1.0.1
|
||||
@@ -0,0 +1 @@
|
||||
sshfs>=2021.8.1
|
||||
@@ -0,0 +1 @@
|
||||
sshfs[gssapi]>=2021.8.1
|
||||
@@ -0,0 +1 @@
|
||||
tpi[ssh]>=0.0.0
|
||||
@@ -1,28 +1,26 @@
|
||||
wheel==0.37.0
|
||||
|
||||
# Test requirements
|
||||
pytest==6.2.4
|
||||
pytest==6.2.5
|
||||
pytest-cov==2.12.1
|
||||
pytest-xdist==2.3.0
|
||||
pytest-mock==3.6.1
|
||||
pytest-lazy-fixture==0.6.3
|
||||
pytest-timeout==1.4.2
|
||||
pytest-docker==0.10.3
|
||||
|
||||
flaky==3.7.0
|
||||
mock==4.0.3
|
||||
rangehttpserver==1.2.0
|
||||
mock-ssh-server==0.9.0
|
||||
beautifulsoup4==4.9.3
|
||||
mock-ssh-server==0.9.1
|
||||
wget==3.2
|
||||
filelock==3.0.12
|
||||
wsgidav==3.1.1
|
||||
crc32c==2.2.post0
|
||||
xmltodict==0.12.0
|
||||
google-compute-engine==2.8.13
|
||||
google-cloud-storage==1.42.0
|
||||
|
||||
google-cloud-storage==1.42.1
|
||||
urllib3==1.26.6
|
||||
dvclive>=0.2.1
|
||||
|
||||
# required by collective.checkdocs
|
||||
Pygments==2.10.0
|
||||
@@ -44,6 +42,3 @@ types-requests
|
||||
types-paramiko
|
||||
types-tabulate
|
||||
types-toml
|
||||
|
||||
# pypi doesn't allow for direct dependencies
|
||||
# gdrivefs @ git+https://github.com/intake/gdrivefs.git
|
||||
@@ -0,0 +1 @@
|
||||
webdav4>=0.9.1
|
||||
@@ -0,0 +1 @@
|
||||
hdfs==2.6.0
|
||||
@@ -14,6 +14,8 @@ datas += copy_metadata("boto3")
|
||||
datas += copy_metadata("ossfs")
|
||||
datas += copy_metadata("sshfs")
|
||||
datas += copy_metadata("webdav4")
|
||||
datas += copy_metadata("aiohttp")
|
||||
datas += copy_metadata("aiohttp_retry")
|
||||
|
||||
# https://github.com/pypa/setuptools/issues/1963
|
||||
hiddenimports = ["pkg_resources.py2_warn"]
|
||||
|
||||
@@ -17,8 +17,6 @@ known_first_party=dvc,tests
|
||||
line_length=79
|
||||
|
||||
[tool:pytest]
|
||||
timeout = 600
|
||||
timeout_method = thread
|
||||
log_level = debug
|
||||
addopts = -ra
|
||||
markers =
|
||||
|
||||
@@ -46,75 +46,25 @@ class build_py(_build_py):
|
||||
_build_py.run(self)
|
||||
|
||||
|
||||
install_requires = [
|
||||
"ply>=3.9", # See https://github.com/pyinstaller/pyinstaller/issues/1945
|
||||
"colorama>=0.3.9",
|
||||
"configobj>=5.0.6",
|
||||
"gitpython>3",
|
||||
"dulwich>=0.20.23",
|
||||
"pygit2>=1.5.0",
|
||||
"setuptools>=34.0.0",
|
||||
"nanotime>=0.5.2",
|
||||
"pyasn1>=0.4.1",
|
||||
"voluptuous>=0.11.7",
|
||||
"requests>=2.22.0",
|
||||
"grandalf==0.6",
|
||||
"distro>=1.3.0",
|
||||
"appdirs>=1.4.3",
|
||||
"ruamel.yaml>=0.16.1",
|
||||
"toml>=0.10.1",
|
||||
"funcy>=1.14",
|
||||
"pathspec>=0.6.0,<0.9.0",
|
||||
"shortuuid>=0.5.0",
|
||||
"tqdm>=4.45.0,<5",
|
||||
"packaging>=19.0",
|
||||
"zc.lockfile>=1.2.1",
|
||||
"flufl.lock>=3.2,<4",
|
||||
"win-unicode-console>=0.5; sys_platform == 'win32'",
|
||||
"pywin32>=225; sys_platform == 'win32' and python_version < '3.10'",
|
||||
"networkx>=2.5",
|
||||
"psutil>=5.8.0",
|
||||
"pydot>=1.2.4",
|
||||
"speedcopy>=2.0.1; python_version < '3.8' and sys_platform == 'win32'",
|
||||
"dataclasses==0.7; python_version < '3.7'",
|
||||
"importlib-metadata>=1.4; python_version < '3.8'",
|
||||
"flatten_dict>=0.4.1,<1",
|
||||
"tabulate>=0.8.7",
|
||||
"pygtrie>=2.3.2",
|
||||
"dpath>=2.0.1,<3",
|
||||
"shtab>=1.3.4,<2",
|
||||
"rich>=10.0.0",
|
||||
"dictdiffer>=0.8.1",
|
||||
"python-benedict>=0.21.1",
|
||||
"pyparsing==2.4.7",
|
||||
"typing_extensions>=3.7.4",
|
||||
"fsspec>=2021.7.0",
|
||||
"diskcache>=5.2.1",
|
||||
]
|
||||
|
||||
|
||||
# Extra dependencies for remote integrations
|
||||
requirements = {
|
||||
path.stem: path.read_text().strip().splitlines()
|
||||
for path in Path("requirements").glob("*.txt")
|
||||
}
|
||||
|
||||
gs = ["gcsfs==2021.7.0"]
|
||||
gdrive = ["pydrive2[fsspec]>=1.9.1"]
|
||||
s3 = ["s3fs==2021.7.0", "aiobotocore[boto3]>1.0.1"]
|
||||
azure = ["adlfs==2021.7.1", "azure-identity>=1.4.0", "knack"]
|
||||
oss = ["ossfs==2021.7.5"]
|
||||
ssh = ["sshfs>=2021.7.1"]
|
||||
|
||||
hdfs = ["pyarrow>=2.0.0; python_version < '3.10'"]
|
||||
webhdfs = ["hdfs==2.5.8"]
|
||||
webdav = ["webdav4>=0.9.0"]
|
||||
# gssapi should not be included in all_remotes, because it doesn't have wheels
|
||||
# for linux and mac, so it will fail to compile if user doesn't have all the
|
||||
# requirements, including kerberos itself. Once all the wheels are available,
|
||||
# we can start shipping it by default.
|
||||
ssh_gssapi = ["sshfs[gssapi]>=2021.7.1"]
|
||||
all_remotes = gs + s3 + azure + ssh + oss + gdrive + hdfs + webhdfs + webdav
|
||||
|
||||
tests_requirements = (
|
||||
Path("test_requirements.txt").read_text().strip().splitlines()
|
||||
)
|
||||
install_requires = requirements.pop("default")
|
||||
requirements["all"] = [
|
||||
requirements
|
||||
for key, requirements in requirements.items()
|
||||
if key not in ("tests", "ssh_gssapi", "terraform")
|
||||
]
|
||||
requirements["tests"] += requirements["terraform"]
|
||||
requirements["dev"] = requirements["all"] + requirements["tests"]
|
||||
|
||||
setup(
|
||||
name="dvc",
|
||||
@@ -123,23 +73,12 @@ setup(
|
||||
long_description=open("README.rst", encoding="UTF-8").read(),
|
||||
author="Dmitry Petrov",
|
||||
author_email="[email protected]",
|
||||
maintainer="Iterative",
|
||||
maintainer_email="[email protected]",
|
||||
download_url="https://github.com/iterative/dvc",
|
||||
license="Apache License 2.0",
|
||||
install_requires=install_requires,
|
||||
extras_require={
|
||||
"all": all_remotes,
|
||||
"gs": gs,
|
||||
"gdrive": gdrive,
|
||||
"s3": s3,
|
||||
"azure": azure,
|
||||
"oss": oss,
|
||||
"ssh": ssh,
|
||||
"ssh_gssapi": ssh_gssapi,
|
||||
"hdfs": hdfs,
|
||||
"webhdfs": webhdfs,
|
||||
"webdav": webdav,
|
||||
"tests": tests_requirements,
|
||||
},
|
||||
extras_require=requirements,
|
||||
keywords="data-science data-version-control machine-learning git"
|
||||
" developer-tools reproducibility collaboration ai",
|
||||
python_requires=">=3.6",
|
||||
|
||||
@@ -5,6 +5,7 @@ import pytest
|
||||
|
||||
from .dir_helpers import * # noqa, pylint: disable=wildcard-import
|
||||
from .remotes import * # noqa, pylint: disable=wildcard-import
|
||||
from .utils.scriptify import scriptify
|
||||
|
||||
# Prevent updater and analytics from running their processes
|
||||
os.environ["DVC_TEST"] = "true"
|
||||
@@ -155,3 +156,15 @@ def pytest_configure(config):
|
||||
enabled_remotes.discard(remote_name)
|
||||
if enabled:
|
||||
enabled_remotes.add(remote_name)
|
||||
|
||||
|
||||
@pytest.fixture()
|
||||
def custom_template(tmp_dir, dvc):
|
||||
import shutil
|
||||
|
||||
template = tmp_dir / "custom_template.json"
|
||||
shutil.copy(tmp_dir / ".dvc" / "plots" / "default.json", template)
|
||||
return template
|
||||
|
||||
|
||||
scriptify_fixture = pytest.fixture(lambda: scriptify, name="scriptify")
|
||||
|
||||
@@ -49,12 +49,14 @@ import os
|
||||
import pathlib
|
||||
import sys
|
||||
from contextlib import contextmanager
|
||||
from functools import partialmethod
|
||||
from textwrap import dedent
|
||||
|
||||
import pytest
|
||||
from funcy import lmap, retry
|
||||
|
||||
from dvc.logger import disable_other_loggers
|
||||
from dvc.utils import serialize
|
||||
from dvc.utils.fs import makedirs
|
||||
|
||||
__all__ = [
|
||||
@@ -67,6 +69,8 @@ __all__ = [
|
||||
"erepo_dir",
|
||||
"git_dir",
|
||||
"git_init",
|
||||
"git_upstream",
|
||||
"git_downstream",
|
||||
]
|
||||
|
||||
|
||||
@@ -248,6 +252,22 @@ class TmpDir(pathlib.Path):
|
||||
def hash_to_path_info(self, hash_):
|
||||
return self / hash_[0:2] / hash_[2:]
|
||||
|
||||
def dump(self, *args, **kwargs):
|
||||
return serialize.DUMPERS[self.suffix](self, *args, **kwargs)
|
||||
|
||||
def parse(self, *args, **kwargs):
|
||||
return serialize.LOADERS[self.suffix](self, *args, **kwargs)
|
||||
|
||||
def modify(self, *args, **kwargs):
|
||||
return serialize.MODIFIERS[self.suffix](self, *args, **kwargs)
|
||||
|
||||
load_yaml = partialmethod(serialize.load_yaml)
|
||||
dump_yaml = partialmethod(serialize.dump_yaml)
|
||||
load_json = partialmethod(serialize.load_json)
|
||||
dump_json = partialmethod(serialize.dump_json)
|
||||
load_toml = partialmethod(serialize.load_toml)
|
||||
dump_toml = partialmethod(serialize.dump_toml)
|
||||
|
||||
|
||||
def _coerce_filenames(filenames):
|
||||
if isinstance(filenames, (str, bytes, pathlib.PurePath)):
|
||||
@@ -407,3 +427,23 @@ def git_dir(make_tmp_dir):
|
||||
path = make_tmp_dir("git-erepo", scm=True)
|
||||
path.scm.commit("init repo")
|
||||
return path
|
||||
|
||||
|
||||
@pytest.fixture
|
||||
def git_upstream(tmp_dir, erepo_dir, git_dir, request):
|
||||
remote = erepo_dir if "dvc" in request.fixturenames else git_dir
|
||||
url = "file://{}".format(remote.resolve().as_posix())
|
||||
tmp_dir.scm.gitpython.repo.create_remote("upstream", url)
|
||||
remote.remote = "upstream"
|
||||
remote.url = url
|
||||
return remote
|
||||
|
||||
|
||||
@pytest.fixture
|
||||
def git_downstream(tmp_dir, erepo_dir, git_dir, request):
|
||||
remote = erepo_dir if "dvc" in request.fixturenames else git_dir
|
||||
url = "file://{}".format(tmp_dir.resolve().as_posix())
|
||||
remote.scm.gitpython.repo.create_remote("upstream", url)
|
||||
remote.remote = "upstream"
|
||||
remote.url = url
|
||||
return remote
|
||||
|
||||
@@ -91,18 +91,14 @@ def checkpoint_stage(tmp_dir, scm, dvc, mocker):
|
||||
|
||||
|
||||
@pytest.fixture
|
||||
def git_upstream(tmp_dir, erepo_dir):
|
||||
url = "file://{}".format(erepo_dir.resolve().as_posix())
|
||||
tmp_dir.scm.gitpython.repo.create_remote("upstream", url)
|
||||
erepo_dir.remote = "upstream"
|
||||
erepo_dir.url = url
|
||||
return erepo_dir
|
||||
def http_auth_patch(mocker):
|
||||
from dulwich.client import HTTPUnauthorized
|
||||
|
||||
url = "https://0.0.0.0"
|
||||
client = mocker.MagicMock()
|
||||
client.get_refs.side_effect = HTTPUnauthorized("", url)
|
||||
client.send_pack.side_effect = HTTPUnauthorized("", url)
|
||||
|
||||
@pytest.fixture
|
||||
def git_downstream(tmp_dir, erepo_dir):
|
||||
url = "file://{}".format(tmp_dir.resolve().as_posix())
|
||||
erepo_dir.scm.gitpython.repo.create_remote("upstream", url)
|
||||
erepo_dir.remote = "upstream"
|
||||
erepo_dir.url = url
|
||||
return erepo_dir
|
||||
patch = mocker.patch("dulwich.client.get_transport_and_path")
|
||||
patch.return_value = (client, url)
|
||||
return url
|
||||
|
||||
@@ -657,3 +657,12 @@ def test_modified_data_dep(tmp_dir, scm, dvc, workspace, params, target):
|
||||
if workspace:
|
||||
assert (tmp_dir / "metrics.yaml").read_text().strip() == params
|
||||
assert (tmp_dir / "data").read_text().strip() == "modified"
|
||||
|
||||
|
||||
def test_exp_run_recursive(tmp_dir, scm, dvc, run_copy_metrics):
|
||||
tmp_dir.dvc_gen("metric_t.json", '{"foo": 1}')
|
||||
run_copy_metrics(
|
||||
"metric_t.json", "metric.json", metrics=["metric.json"], no_exec=True
|
||||
)
|
||||
assert dvc.experiments.run(".", recursive=True)
|
||||
assert (tmp_dir / "metric.json").parse() == {"foo": 1}
|
||||
|
||||
@@ -0,0 +1,34 @@
|
||||
import os
|
||||
|
||||
from dvc.command.experiments import CmdExperimentsInit
|
||||
from dvc.main import main
|
||||
from dvc.utils.serialize import load_yaml
|
||||
|
||||
|
||||
def test_init(tmp_dir, dvc):
|
||||
tmp_dir.gen(
|
||||
{
|
||||
CmdExperimentsInit.CODE: {"copy.py": ""},
|
||||
"data": "data",
|
||||
"params.yaml": '{"foo": 1}',
|
||||
"dvclive": {},
|
||||
"plots": {},
|
||||
}
|
||||
)
|
||||
code_path = os.path.join(CmdExperimentsInit.CODE, "copy.py")
|
||||
script = f"python {code_path}"
|
||||
|
||||
assert main(["exp", "init", script]) == 0
|
||||
assert load_yaml(tmp_dir / "dvc.yaml") == {
|
||||
"stages": {
|
||||
"default": {
|
||||
"cmd": script,
|
||||
"deps": ["data", "src"],
|
||||
"live": {"dvclive": {"html": True, "summary": True}},
|
||||
"metrics": [{"metrics.json": {"cache": False}}],
|
||||
"outs": ["models"],
|
||||
"params": ["foo"],
|
||||
"plots": [{"plots": {"cache": False}}],
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -252,3 +252,37 @@ def test_push_pull_cache(
|
||||
path = os.path.join(dvc.odb.local.cache_dir, hash_[:2], hash_[2:])
|
||||
assert os.path.exists(path)
|
||||
assert open(path).read() == str(x)
|
||||
|
||||
|
||||
def test_auth_error_list(tmp_dir, scm, dvc, http_auth_patch):
|
||||
from dvc.scm.base import GitAuthError
|
||||
|
||||
with pytest.raises(
|
||||
GitAuthError,
|
||||
match=f"HTTP Git authentication is not supported: '{http_auth_patch}'",
|
||||
):
|
||||
dvc.experiments.ls(git_remote=http_auth_patch)
|
||||
|
||||
|
||||
def test_auth_error_pull(tmp_dir, scm, dvc, http_auth_patch):
|
||||
from dvc.scm.base import GitAuthError
|
||||
|
||||
with pytest.raises(
|
||||
GitAuthError,
|
||||
match=f"HTTP Git authentication is not supported: '{http_auth_patch}'",
|
||||
):
|
||||
dvc.experiments.pull(http_auth_patch, "foo")
|
||||
|
||||
|
||||
def test_auth_error_push(tmp_dir, scm, dvc, exp_stage, http_auth_patch):
|
||||
from dvc.scm.base import GitAuthError
|
||||
|
||||
results = dvc.experiments.run(exp_stage.addressing, params=["foo=2"])
|
||||
exp = first(results)
|
||||
ref_info = first(exp_refs_by_rev(scm, exp))
|
||||
|
||||
with pytest.raises(
|
||||
GitAuthError,
|
||||
match=f"HTTP Git authentication is not supported: '{http_auth_patch}'",
|
||||
):
|
||||
dvc.experiments.push(http_auth_patch, ref_info.name)
|
||||
|
||||
@@ -72,3 +72,47 @@ def test_remove_special_queued_experiments(tmp_dir, scm, dvc, exp_stage):
|
||||
assert rev3 in dvc.experiments.stash_revs
|
||||
assert scm.get_ref(str(ref_info1)) is None
|
||||
assert scm.get_ref(str(ref_info2)) is not None
|
||||
|
||||
|
||||
def test_remove_all(tmp_dir, scm, dvc, exp_stage):
|
||||
results = dvc.experiments.run(exp_stage.addressing, params=["foo=1"])
|
||||
ref_info1 = first(exp_refs_by_rev(scm, first(results)))
|
||||
dvc.experiments.run(exp_stage.addressing, params=["foo=2"], queue=True)
|
||||
scm.add(["dvc.yaml", "dvc.lock", "copy.py", "params.yaml", "metrics.yaml"])
|
||||
scm.commit("update baseline")
|
||||
|
||||
results = dvc.experiments.run(exp_stage.addressing, params=["foo=3"])
|
||||
ref_info2 = first(exp_refs_by_rev(scm, first(results)))
|
||||
dvc.experiments.run(exp_stage.addressing, params=["foo=4"], queue=True)
|
||||
|
||||
removed = dvc.experiments.remove(clear_all=True)
|
||||
assert removed == 2
|
||||
assert len(dvc.experiments.stash) == 2
|
||||
assert scm.get_ref(str(ref_info2)) is None
|
||||
assert scm.get_ref(str(ref_info1)) is None
|
||||
|
||||
|
||||
@pytest.mark.parametrize("use_url", [True, False])
|
||||
def test_remove_remote(tmp_dir, scm, dvc, exp_stage, git_upstream, use_url):
|
||||
remote = git_upstream.url if use_url else git_upstream.remote
|
||||
|
||||
ref_info_list = []
|
||||
exp_list = []
|
||||
for i in range(3):
|
||||
results = dvc.experiments.run(
|
||||
exp_stage.addressing, params=[f"foo={i}"]
|
||||
)
|
||||
exp = first(results)
|
||||
exp_list.append(exp)
|
||||
ref_info = first(exp_refs_by_rev(scm, exp))
|
||||
ref_info_list.append(ref_info)
|
||||
dvc.experiments.push(remote, ref_info.name)
|
||||
assert git_upstream.scm.get_ref(str(ref_info)) == exp
|
||||
|
||||
dvc.experiments.remove(
|
||||
remote=remote, exp_names=[str(ref_info_list[0]), ref_info_list[1].name]
|
||||
)
|
||||
|
||||
assert git_upstream.scm.get_ref(str(ref_info_list[0])) is None
|
||||
assert git_upstream.scm.get_ref(str(ref_info_list[1])) is None
|
||||
assert git_upstream.scm.get_ref(str(ref_info_list[2])) == exp_list[2]
|
||||
|
||||
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Reference in New Issue
Block a user