mirror of
https://github.com/Stone-Red-Code/dvc.git
synced 2026-11-02 23:09:28 +01:00
Compare commits
| Author | SHA1 | Date | |
|---|---|---|---|
|
|
475ef3ce65 | ||
|
|
22eb9051f6 | ||
|
|
9ef1d1d6e6 | ||
|
|
d5cc54ad35 | ||
|
|
47ece317a5 | ||
|
|
8f82a421a0 | ||
|
|
ed2ccaf54c | ||
|
|
23534063ca | ||
|
|
d56957416e | ||
|
|
269e12287c | ||
|
|
5413187c2d | ||
|
|
d56376c70a | ||
|
|
1d5d15644d | ||
|
|
a0e45cdd5d | ||
|
|
7fe316b8e8 | ||
|
|
3478a7e6a9 | ||
|
|
d1fa3d2c21 | ||
|
|
b594337a69 | ||
|
|
36f6f29ac8 | ||
|
|
bbaf57c5b2 | ||
|
|
61f8478885 | ||
|
|
4493da0f04 | ||
|
|
7c225206ab | ||
|
|
be5a54bfb4 | ||
|
|
d9ce9b4fef | ||
|
|
689988592f | ||
|
|
1ddfca856a | ||
|
|
e451ce7d0b | ||
|
|
de05659a93 | ||
|
|
e9244924d7 | ||
|
|
3bbf8fa7d2 | ||
|
|
ed87c308ba | ||
|
|
add28f73f1 | ||
|
|
2bc693fb4c | ||
|
|
ac57fa53fe | ||
|
|
0ca0d94cb2 | ||
|
|
c12deaa62c | ||
|
|
5606608867 | ||
|
|
6711b653a5 | ||
|
|
faef8eec2c | ||
|
|
11766c8839 | ||
|
|
1180a2f051 | ||
|
|
f59a99d442 | ||
|
|
d5f5e14183 | ||
|
|
10f60bed58 | ||
|
|
6a0d7f9c51 | ||
|
|
8640beb998 | ||
|
|
884182f6f2 | ||
|
|
7393ebdcb4 | ||
|
|
cf651c52a1 | ||
|
|
a3f20eb6f4 | ||
|
|
d60edcd88e | ||
|
|
a6cdb9efd2 | ||
|
|
4a558edc59 | ||
|
|
8ff92cc7b0 | ||
|
|
bd88000e2f | ||
|
|
4da4c69985 | ||
|
|
8a1c757497 | ||
|
|
22655fa46d | ||
|
|
103a0e2523 | ||
|
|
0d025e5943 | ||
|
|
b01c4f8b05 | ||
|
|
c27125d9c0 | ||
|
|
71734a3d09 | ||
|
|
fa7619dfee | ||
|
|
67aaf6a192 | ||
|
|
3adede8427 | ||
|
|
a686dded15 | ||
|
|
8b1e61d3c5 | ||
|
|
4594087786 | ||
|
|
5d69f57abf | ||
|
|
53c886e407 | ||
|
|
890fbf3a6e | ||
|
|
81abf2e412 | ||
|
|
3a9d0244b5 | ||
|
|
423166cb0f | ||
|
|
4904286307 | ||
|
|
e556c632b3 | ||
|
|
db0c6e9086 | ||
|
|
4177a5dc9e | ||
|
|
04af944e22 | ||
|
|
13b2ac3bd1 | ||
|
|
25ea5f35ec | ||
|
|
6bd14b21ef | ||
|
|
c2829f4ce8 | ||
|
|
d8a4ecd68f | ||
|
|
7fb9dcec12 | ||
|
|
f23bc71eea | ||
|
|
8b326137c6 | ||
|
|
90109bccd7 | ||
|
|
8c484645fa | ||
|
|
c039e9a6e7 | ||
|
|
10cfa0d5d7 | ||
|
|
ecab4a22fe | ||
|
|
4f354f5333 | ||
|
|
f6b1f01a5c | ||
|
|
6d17bcce93 | ||
|
|
8da04c7c81 | ||
|
|
c617769a1d | ||
|
|
69c3c83833 | ||
|
|
122a68398e | ||
|
|
748c015638 | ||
|
|
ba1ab86078 | ||
|
|
aaa467a96b | ||
|
|
ed15e59115 | ||
|
|
e63cb31a66 | ||
|
|
4c1f172132 |
@@ -1,49 +0,0 @@
|
||||
# Config for https://github.com/apps/release-drafter
|
||||
name-template: "$RESOLVED_VERSION 🦉 "
|
||||
tag-template: "$RESOLVED_VERSION"
|
||||
categories:
|
||||
- title: "🚀 New Features and Enhancements "
|
||||
labels:
|
||||
- "feature"
|
||||
- "enhancement"
|
||||
- "ui"
|
||||
- title: "💣 Breaking Changes "
|
||||
labels:
|
||||
- "breaking-change"
|
||||
- title: "🏇 Optimizations "
|
||||
labels:
|
||||
- "optimize"
|
||||
- "performance"
|
||||
- title: "🐛 Bug Fixes "
|
||||
labels:
|
||||
- "bugfix"
|
||||
- "bug"
|
||||
- title: "🔨 Maintenance "
|
||||
labels:
|
||||
- "maintenance"
|
||||
- "refactoring"
|
||||
- "chore"
|
||||
- "build"
|
||||
- "ci"
|
||||
change-template: "- $TITLE (#$NUMBER) @$AUTHOR"
|
||||
version-resolver:
|
||||
major:
|
||||
labels:
|
||||
- "major"
|
||||
minor:
|
||||
labels:
|
||||
- "minor"
|
||||
patch:
|
||||
labels:
|
||||
- "patch"
|
||||
default: patch
|
||||
exclude-labels:
|
||||
- "skip-changelog"
|
||||
template: |
|
||||
> Refer to https://dvc.org/doc/install for installation instructions.
|
||||
|
||||
## Changes
|
||||
|
||||
$CHANGES
|
||||
|
||||
Thanks again to $CONTRIBUTORS for the contributions! 🎉
|
||||
@@ -66,8 +66,6 @@ jobs:
|
||||
run: |
|
||||
pip install --upgrade pip setuptools wheel
|
||||
pip install -e ".[dev]"
|
||||
env:
|
||||
AIOHTTP_NO_EXTENSIONS: ${{ matrix.pyv == '3.11-dev' && '1' }}
|
||||
- name: run tests
|
||||
timeout-minutes: 40
|
||||
run: pytest -nauto -ra --durations 100 --cov=dvc --cov-report=xml --cov-report=term -k "${{ matrix.pytest-filter }}"
|
||||
|
||||
@@ -6,7 +6,7 @@ repos:
|
||||
- id: black
|
||||
language_version: python3
|
||||
repo: https://github.com/ambv/black
|
||||
rev: 22.6.0
|
||||
rev: 22.10.0
|
||||
- repo: https://github.com/pre-commit/pre-commit-hooks
|
||||
rev: v4.3.0
|
||||
hooks:
|
||||
@@ -16,9 +16,9 @@ repos:
|
||||
- id: codespell
|
||||
args:
|
||||
- --ignore-words-list
|
||||
- ba,datas,fo,uptodate,cachable
|
||||
- ba,datas,fo,uptodate,cachable,falsy
|
||||
repo: https://github.com/codespell-project/codespell
|
||||
rev: v2.1.0
|
||||
rev: v2.2.2
|
||||
- hooks:
|
||||
- id: isort
|
||||
language_version: python3
|
||||
|
||||
+1
-1
@@ -82,7 +82,7 @@ To share and back up the *data cache*, DVC supports multiple remote storage plat
|
||||
|
||||
|Flowchart|
|
||||
|
||||
`DVC pipelines <https://dvc.org/doc/start/data-management/pipelines>`_ (computational graphs) connect code and data together.
|
||||
`DVC pipelines <https://dvc.org/doc/start/data-management/data-pipelines>`_ (computational graphs) connect code and data together.
|
||||
They specify all steps required to produce a model: input dependencies including code, data, commands to run; and output information to be saved.
|
||||
|
||||
Last but not least, `DVC Experiment Versioning <https://dvc.org/doc/start/experiments>`_ lets you prepare and run a large number of experiments.
|
||||
|
||||
+51
-17
@@ -1,16 +1,14 @@
|
||||
from contextlib import ExitStack, contextmanager
|
||||
from datetime import datetime
|
||||
from typing import TYPE_CHECKING, Callable, Union
|
||||
from typing import TYPE_CHECKING, Callable, Optional, Union
|
||||
|
||||
if TYPE_CHECKING:
|
||||
from argparse import Namespace
|
||||
from types import FrameType
|
||||
|
||||
|
||||
@contextmanager
|
||||
def viztracer_profile(
|
||||
path: Union[Callable[[], str], str],
|
||||
max_stack_depth: int = -1,
|
||||
):
|
||||
def viztracer_profile(path: Union[Callable[[], str], str], depth: int = -1):
|
||||
try:
|
||||
import viztracer # pylint: disable=import-error
|
||||
except ImportError:
|
||||
@@ -18,7 +16,7 @@ def viztracer_profile(
|
||||
yield
|
||||
return
|
||||
|
||||
tracer = viztracer.VizTracer(max_stack_depth=max_stack_depth)
|
||||
tracer = viztracer.VizTracer(max_stack_depth=depth)
|
||||
|
||||
tracer.start()
|
||||
yield
|
||||
@@ -109,6 +107,38 @@ def debug():
|
||||
raise # prevent from jumping ahead
|
||||
|
||||
|
||||
def _sigshow(_, frame: Optional["FrameType"]) -> None:
|
||||
from shutil import get_terminal_size
|
||||
from traceback import format_stack
|
||||
|
||||
from dvc.ui import ui
|
||||
|
||||
lines = "\u2015" * get_terminal_size().columns
|
||||
ui.error_write(lines, "\n", *format_stack(frame), lines, sep="")
|
||||
|
||||
|
||||
@contextmanager
|
||||
def show_stack():
|
||||
r"""Show stack trace on SIGQUIT (Ctrl-\) or SIGINFO (Ctrl-T on macOS)."""
|
||||
import signal
|
||||
|
||||
signal.signal(signal.SIGQUIT, _sigshow)
|
||||
try:
|
||||
signal.signal(signal.SIGINFO, _sigshow) # only available on macOS
|
||||
except AttributeError:
|
||||
pass
|
||||
yield
|
||||
|
||||
|
||||
def _get_path_func(tool: str, ext: str):
|
||||
fmt = f"{tool}.dvc-{{now:%Y%m%d}}_{{now:%H%M%S}}.{ext}"
|
||||
|
||||
def func(now: Optional["datetime"] = None) -> str:
|
||||
return fmt.format(now=now or datetime.now())
|
||||
|
||||
return func
|
||||
|
||||
|
||||
@contextmanager
|
||||
def debugtools(args: "Namespace" = None, **kwargs):
|
||||
kw = vars(args) if args else {}
|
||||
@@ -121,19 +151,16 @@ def debugtools(args: "Namespace" = None, **kwargs):
|
||||
stack.enter_context(profile(kw.get("cprofile_dump")))
|
||||
if kw.get("instrument") or kw.get("instrument_open"):
|
||||
stack.enter_context(instrument(kw.get("instrument_open", False)))
|
||||
if kw.get("show_stack", False):
|
||||
stack.enter_context(show_stack())
|
||||
if kw.get("yappi"):
|
||||
output = "callgrind.dvc-{0:%Y%m%d}_{0:%H%M%S}.out"
|
||||
stack.enter_context(
|
||||
yappi_profile(path=lambda: output.format(datetime.now()))
|
||||
)
|
||||
path_func = _get_path_func("callgrind", "out")
|
||||
stack.enter_context(yappi_profile(path=path_func))
|
||||
if kw.get("viztracer") or kw.get("viztracer_depth"):
|
||||
output = "viztracer.dvc-{0:%Y%m%d}_{0:%H%M%S}.json"
|
||||
stack.enter_context(
|
||||
viztracer_profile(
|
||||
path=lambda: output.format(datetime.now()),
|
||||
max_stack_depth=kw.get("viztracer_depth") or -1,
|
||||
)
|
||||
)
|
||||
path_func = _get_path_func("viztracer", "json")
|
||||
depth = kw.get("viztracer_depth") or -1
|
||||
prof = viztracer_profile(path=path_func, depth=depth)
|
||||
stack.enter_context(prof)
|
||||
yield
|
||||
|
||||
|
||||
@@ -160,3 +187,10 @@ def add_debugging_flags(parser):
|
||||
parser.add_argument(
|
||||
"--instrument-open", action="store_true", default=False, help=SUPPRESS
|
||||
)
|
||||
parser.add_argument(
|
||||
"--show-stack",
|
||||
"--ss",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help=SUPPRESS,
|
||||
)
|
||||
|
||||
@@ -29,6 +29,7 @@ from dvc.commands import (
|
||||
init,
|
||||
install,
|
||||
ls,
|
||||
ls_url,
|
||||
machine,
|
||||
metrics,
|
||||
move,
|
||||
@@ -75,6 +76,7 @@ COMMANDS = [
|
||||
install,
|
||||
root,
|
||||
ls,
|
||||
ls_url,
|
||||
freeze,
|
||||
dag,
|
||||
daemon,
|
||||
|
||||
@@ -110,7 +110,7 @@ def add_parser(subparsers, parent_parser):
|
||||
nargs="*",
|
||||
help=(
|
||||
"Limit command scope to these tracked files/directories, "
|
||||
".dvc files, or stage names."
|
||||
".dvc files and stage names."
|
||||
),
|
||||
).complete = completion.DVC_FILE
|
||||
checkout_parser.set_defaults(func=CmdCheckout)
|
||||
|
||||
@@ -70,7 +70,9 @@ def add_parser(subparsers, parent_parser):
|
||||
commit_parser.add_argument(
|
||||
"targets",
|
||||
nargs="*",
|
||||
help="stages or .dvc files to commit. Optional. "
|
||||
"(Finds all DVC files in the workspace by default.)",
|
||||
help=(
|
||||
"Limit command scope to these tracked files/directories, "
|
||||
".dvc files and stage names."
|
||||
),
|
||||
).complete = completion.DVCFILES_AND_STAGE
|
||||
commit_parser.set_defaults(func=CmdCommit)
|
||||
|
||||
+1
-1
@@ -204,7 +204,7 @@ def add_parser(subparsers, parent_parser):
|
||||
dag_parser.add_argument(
|
||||
"target",
|
||||
nargs="?",
|
||||
help="Stage or output to show pipeline for (optional). "
|
||||
help="Stage name or output to show pipeline for. "
|
||||
"Finds all stages in the workspace by default.",
|
||||
)
|
||||
dag_parser.set_defaults(func=CmdDAG)
|
||||
|
||||
@@ -120,7 +120,7 @@ def shared_parent_parser():
|
||||
nargs="*",
|
||||
help=(
|
||||
"Limit command scope to these tracked files/directories, "
|
||||
".dvc files, or stage names."
|
||||
".dvc files and stage names."
|
||||
),
|
||||
).complete = completion.DVC_FILE
|
||||
|
||||
@@ -195,7 +195,7 @@ def add_parser(subparsers, _parent_parser):
|
||||
"--glob",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Pull cache for targets matching shell-style wildcards.",
|
||||
help=argparse.SUPPRESS,
|
||||
)
|
||||
pull_parser.set_defaults(func=CmdDataPull)
|
||||
|
||||
|
||||
@@ -16,13 +16,17 @@ class CmdExperimentsList(CmdBase):
|
||||
num=self.args.num,
|
||||
git_remote=self.args.git_remote,
|
||||
)
|
||||
tags = self.repo.scm.describe(exps)
|
||||
remained = {baseline for baseline, tag in tags.items() if tag is None}
|
||||
base = "refs/heads/"
|
||||
ref_heads = self.repo.scm.describe(remained, base=base)
|
||||
|
||||
for baseline in exps:
|
||||
tag = self.repo.scm.describe(baseline)
|
||||
if not tag:
|
||||
branch = self.repo.scm.describe(baseline, base="refs/heads")
|
||||
if branch:
|
||||
tag = branch.split("/")[-1]
|
||||
name = tag if tag else baseline[:7]
|
||||
name = (
|
||||
tags[baseline]
|
||||
or ref_heads[baseline][len(base) :]
|
||||
or baseline[:7]
|
||||
)
|
||||
if not name_only:
|
||||
print(f"{name}:")
|
||||
for exp_name in exps[baseline]:
|
||||
|
||||
@@ -95,11 +95,8 @@ def _collect_rows(
|
||||
|
||||
exp = results.get("data", {})
|
||||
|
||||
if exp.get("running"):
|
||||
state = "Running"
|
||||
elif exp.get("queued"):
|
||||
state = "Queued"
|
||||
else:
|
||||
state = exp.get("status")
|
||||
if state == "Success":
|
||||
state = fill_value
|
||||
|
||||
is_baseline = rev == "baseline"
|
||||
@@ -476,6 +473,8 @@ class CmdExperimentsShow(CmdBase):
|
||||
all_branches=self.args.all_branches,
|
||||
all_tags=self.args.all_tags,
|
||||
all_commits=self.args.all_commits,
|
||||
hide_queued=self.args.hide_queued,
|
||||
hide_failed=self.args.hide_failed,
|
||||
revs=self.args.rev,
|
||||
num=self.args.num,
|
||||
sha_only=self.args.sha,
|
||||
@@ -594,6 +593,18 @@ def add_parser(experiments_subparsers, parent_parser):
|
||||
default=False,
|
||||
help="Always show git commit SHAs instead of branch/tag names.",
|
||||
)
|
||||
experiments_show_parser.add_argument(
|
||||
"--hide-failed",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Hide failed experiments in the table.",
|
||||
)
|
||||
experiments_show_parser.add_argument(
|
||||
"--hide-queued",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Hide queued experiments in the table.",
|
||||
)
|
||||
experiments_show_parser.add_argument(
|
||||
"--json",
|
||||
"--show-json",
|
||||
|
||||
@@ -74,7 +74,7 @@ class CmdMergeDriver(CmdHookBase):
|
||||
our = Dvcfile(dvc, self.args.our, verify=False)
|
||||
their = Dvcfile(dvc, self.args.their, verify=False)
|
||||
|
||||
our.merge(ancestor, their)
|
||||
our.merge(ancestor, their, allowed=["add", "remove", "change"])
|
||||
|
||||
return 0
|
||||
finally:
|
||||
|
||||
@@ -25,6 +25,7 @@ class CmdImportUrl(CmdBase):
|
||||
labels=self.args.labels,
|
||||
meta=self.args.meta,
|
||||
jobs=self.args.jobs,
|
||||
version_aware=self.args.version_aware,
|
||||
)
|
||||
except DvcException:
|
||||
logger.exception(
|
||||
@@ -108,5 +109,14 @@ def add_parser(subparsers, parent_parser):
|
||||
),
|
||||
metavar="<number>",
|
||||
)
|
||||
import_parser.add_argument(
|
||||
"--version-aware",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help=(
|
||||
"Import using cloud versioning. Implied if the URL contains a "
|
||||
"version ID."
|
||||
),
|
||||
)
|
||||
_add_annotating_args(import_parser)
|
||||
import_parser.set_defaults(func=CmdImportUrl)
|
||||
|
||||
@@ -0,0 +1,43 @@
|
||||
import argparse
|
||||
import logging
|
||||
|
||||
from dvc.cli.command import CmdBaseNoRepo
|
||||
from dvc.cli.utils import append_doc_link
|
||||
from dvc.ui import ui
|
||||
|
||||
from .ls import _prettify
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
class CmdListUrl(CmdBaseNoRepo):
|
||||
def run(self):
|
||||
from dvc.repo import Repo
|
||||
|
||||
entries = Repo.ls_url(self.args.url, recursive=self.args.recursive)
|
||||
if entries:
|
||||
entries = _prettify(entries, with_color=True)
|
||||
ui.write("\n".join(entries))
|
||||
return 0
|
||||
|
||||
|
||||
def add_parser(subparsers, parent_parser):
|
||||
LS_HELP = "List directory contents from URL."
|
||||
lsurl_parser = subparsers.add_parser(
|
||||
"list-url",
|
||||
aliases=["ls-url"],
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(LS_HELP, "list-url"),
|
||||
help=LS_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
lsurl_parser.add_argument(
|
||||
"url", help="See `dvc import-url -h` for full list of supported URLs."
|
||||
)
|
||||
lsurl_parser.add_argument(
|
||||
"-R",
|
||||
"--recursive",
|
||||
action="store_true",
|
||||
help="Recursively list files.",
|
||||
)
|
||||
lsurl_parser.set_defaults(func=CmdListUrl)
|
||||
+2
-15
@@ -25,7 +25,7 @@ def _show_json(renderers, split=False):
|
||||
|
||||
|
||||
def _adjust_vega_renderers(renderers):
|
||||
from dvc.render import VERSION_FIELD
|
||||
from dvc.render import REVISION_FIELD, VERSION_FIELD
|
||||
from dvc_render import VegaRenderer
|
||||
|
||||
for r in renderers:
|
||||
@@ -42,6 +42,7 @@ def _adjust_vega_renderers(renderers):
|
||||
dp["rev"] = "::".join(vi.values())
|
||||
else:
|
||||
for dp in r.datapoints:
|
||||
dp[REVISION_FIELD] = dp[VERSION_FIELD]["revision"]
|
||||
dp.pop(VERSION_FIELD, {})
|
||||
|
||||
|
||||
@@ -66,18 +67,6 @@ def _data_versions_count(renderer):
|
||||
return len(set(x))
|
||||
|
||||
|
||||
def _filter_unhandled_renderers(renderers):
|
||||
# filtering out renderers currently unhandled by vscode extension
|
||||
from dvc_render import VegaRenderer
|
||||
|
||||
def _is_json_viable(r):
|
||||
return not (
|
||||
isinstance(r, VegaRenderer) and _data_versions_count(r) > 1
|
||||
)
|
||||
|
||||
return list(filter(_is_json_viable, renderers))
|
||||
|
||||
|
||||
class CmdPlots(CmdBase):
|
||||
def _func(self, *args, **kwargs):
|
||||
raise NotImplementedError
|
||||
@@ -156,12 +145,10 @@ class CmdPlots(CmdBase):
|
||||
templates_dir=self.repo.plots.templates_dir,
|
||||
)
|
||||
if self.args.json:
|
||||
renderers = _filter_unhandled_renderers(renderers)
|
||||
_show_json(renderers, self.args.split)
|
||||
return 0
|
||||
|
||||
_adjust_vega_renderers(renderers)
|
||||
|
||||
if self.args.show_vega:
|
||||
renderer = first(filter(lambda r: r.TYPE == "vega", renderers))
|
||||
if renderer:
|
||||
|
||||
+10
-1
@@ -55,7 +55,16 @@ def add_arguments(repro_parser):
|
||||
repro_parser.add_argument(
|
||||
"targets",
|
||||
nargs="*",
|
||||
help="Stages to reproduce. 'dvc.yaml' by default.",
|
||||
help=(
|
||||
"""\
|
||||
Stages to reproduce. 'dvc.yaml' by default.
|
||||
The targets can be path to a dvc.yaml file or `.dvc` file,
|
||||
or a stage name from dvc.yaml file from
|
||||
current working directory. To run a stage from dvc.yaml
|
||||
from other directories, the target must be a path followed by colon `:`
|
||||
and then the stage name name.
|
||||
"""
|
||||
),
|
||||
).complete = completion.DVCFILES_AND_STAGE
|
||||
repro_parser.add_argument(
|
||||
"-f",
|
||||
|
||||
@@ -60,7 +60,7 @@ def add_parser(subparsers, parent_parser):
|
||||
"--no-download",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Update .dvc file hash value(s)"
|
||||
help="Update .dvc file git revision/hash value(s)"
|
||||
" but do not download the file(s).",
|
||||
)
|
||||
update_parser.add_argument(
|
||||
|
||||
+4
-1
@@ -176,7 +176,10 @@ class Config(dict):
|
||||
|
||||
if fs.exists(filename):
|
||||
with fs.open(filename) as fobj:
|
||||
conf_obj = ConfigObj(fobj)
|
||||
try:
|
||||
conf_obj = ConfigObj(fobj)
|
||||
except UnicodeDecodeError as exc:
|
||||
raise ConfigError(str(exc)) from exc
|
||||
else:
|
||||
conf_obj = ConfigObj()
|
||||
return _parse_named(_lower_keys(conf_obj.dict()))
|
||||
|
||||
@@ -180,6 +180,8 @@ SCHEMA = {
|
||||
"user": str,
|
||||
"password": str,
|
||||
"ask_password": Bool,
|
||||
"passphrase": str,
|
||||
"ask_passphrase": Bool,
|
||||
"keyfile": str,
|
||||
"timeout": Coerce(int),
|
||||
"gss_auth": Bool,
|
||||
|
||||
+6
-9
@@ -11,6 +11,7 @@ if TYPE_CHECKING:
|
||||
from dvc_data.hashfile.db import HashFileDB
|
||||
from dvc_data.hashfile.hash_info import HashInfo
|
||||
from dvc_data.hashfile.status import CompareStatusResult
|
||||
from dvc_data.hashfile.transfer import TransferResult
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
@@ -106,14 +107,10 @@ class DataCloud:
|
||||
dest_odb: "HashFileDB",
|
||||
objs: Iterable["HashInfo"],
|
||||
**kwargs,
|
||||
):
|
||||
from dvc.exceptions import FileTransferError
|
||||
from dvc_data.hashfile.transfer import TransferError, transfer
|
||||
) -> "TransferResult":
|
||||
from dvc_data.hashfile.transfer import transfer
|
||||
|
||||
try:
|
||||
return transfer(src_odb, dest_odb, objs, **kwargs)
|
||||
except TransferError as exc:
|
||||
raise FileTransferError(exc.fails) from exc
|
||||
return transfer(src_odb, dest_odb, objs, **kwargs)
|
||||
|
||||
def push(
|
||||
self,
|
||||
@@ -121,7 +118,7 @@ class DataCloud:
|
||||
jobs: Optional[int] = None,
|
||||
remote: Optional[str] = None,
|
||||
odb: Optional["HashFileDB"] = None,
|
||||
):
|
||||
) -> "TransferResult":
|
||||
"""Push data items in a cloud-agnostic way.
|
||||
|
||||
Args:
|
||||
@@ -148,7 +145,7 @@ class DataCloud:
|
||||
jobs: Optional[int] = None,
|
||||
remote: Optional[str] = None,
|
||||
odb: Optional["HashFileDB"] = None,
|
||||
):
|
||||
) -> "TransferResult":
|
||||
"""Pull data items in a cloud-agnostic way.
|
||||
|
||||
Args:
|
||||
|
||||
+32
-2
@@ -1,6 +1,7 @@
|
||||
from typing import Type
|
||||
from typing import Dict, Type
|
||||
|
||||
from dvc.exceptions import DvcException
|
||||
from dvc.fs import download as fs_download
|
||||
from dvc.output import Output
|
||||
|
||||
|
||||
@@ -30,5 +31,34 @@ class Dependency(Output):
|
||||
) # type: Type[DvcException]
|
||||
IsStageFileError = DependencyIsStageFileError # type: Type[DvcException]
|
||||
|
||||
def workspace_status(self) -> Dict[str, str]:
|
||||
if self.fs.version_aware:
|
||||
old_fs_path = self.fs_path
|
||||
try:
|
||||
self.fs_path = self.fs.path.version_path(self.fs_path, None)
|
||||
if self.changed_meta():
|
||||
return {str(self): "update available"}
|
||||
finally:
|
||||
self.fs_path = old_fs_path
|
||||
return super().workspace_status()
|
||||
|
||||
def update(self, rev=None):
|
||||
pass
|
||||
if self.fs.version_aware:
|
||||
self.fs_path = self.fs.path.version_path(self.fs_path, rev)
|
||||
self.meta = self.get_meta()
|
||||
self.def_path = self.fs.path.version_path(
|
||||
self.def_path, self.meta.version_id
|
||||
)
|
||||
self.fs_path = self.fs.path.version_path(
|
||||
self.fs_path, self.meta.version_id
|
||||
)
|
||||
|
||||
def download(self, to, jobs=None):
|
||||
fs_download(self.fs, self.fs_path, to, jobs=jobs)
|
||||
|
||||
def save(self):
|
||||
super().save()
|
||||
if self.fs.version_aware:
|
||||
self.fs_path = self.fs.path.version_path(
|
||||
self.fs_path, self.meta.version_id
|
||||
)
|
||||
|
||||
+19
-5
@@ -6,6 +6,7 @@ from typing import TYPE_CHECKING, Dict, Optional, Set, Tuple
|
||||
from voluptuous import Required
|
||||
|
||||
from dvc.prompt import confirm
|
||||
from dvc_data.hashfile.meta import Meta
|
||||
|
||||
from .base import Dependency
|
||||
|
||||
@@ -32,6 +33,7 @@ class RepoDependency(Dependency):
|
||||
def __init__(self, def_repo, stage, *args, **kwargs):
|
||||
self.def_repo = def_repo
|
||||
self._objs: Dict[str, "HashFile"] = {}
|
||||
self._meta: Dict[str, Meta] = {}
|
||||
super().__init__(stage, *args, **kwargs)
|
||||
|
||||
def _parse_path(self, fs, fs_path):
|
||||
@@ -94,12 +96,12 @@ class RepoDependency(Dependency):
|
||||
def get_used_objs(
|
||||
self, **kwargs
|
||||
) -> Dict[Optional["ObjectDB"], Set["HashInfo"]]:
|
||||
used, _ = self._get_used_and_obj(**kwargs)
|
||||
used, _, _ = self._get_used_and_obj(**kwargs)
|
||||
return used
|
||||
|
||||
def _get_used_and_obj(
|
||||
self, obj_only=False, **kwargs
|
||||
) -> Tuple[Dict[Optional["ObjectDB"], Set["HashInfo"]], "HashFile"]:
|
||||
) -> Tuple[Dict[Optional["ObjectDB"], Set["HashInfo"]], Meta, "HashFile"]:
|
||||
from dvc.config import NoRemoteError
|
||||
from dvc.exceptions import NoOutputOrStageError, PathMissingError
|
||||
from dvc.utils import as_posix
|
||||
@@ -131,7 +133,7 @@ class RepoDependency(Dependency):
|
||||
pass
|
||||
|
||||
try:
|
||||
object_store, _, obj = build(
|
||||
object_store, meta, obj = build(
|
||||
local_odb,
|
||||
as_posix(self.def_path),
|
||||
repo.dvcfs,
|
||||
@@ -145,10 +147,12 @@ class RepoDependency(Dependency):
|
||||
object_store.read_only = True
|
||||
|
||||
self._objs[rev] = obj
|
||||
self._meta[rev] = meta
|
||||
|
||||
used_obj_ids[object_store].add(obj.hash_info)
|
||||
if isinstance(obj, Tree):
|
||||
used_obj_ids[object_store].update(oid for _, _, oid in obj)
|
||||
return used_obj_ids, obj
|
||||
return used_obj_ids, meta, obj
|
||||
|
||||
def _check_circular_import(self, odb, obj_ids):
|
||||
from dvc.exceptions import CircularImportError
|
||||
@@ -190,11 +194,21 @@ class RepoDependency(Dependency):
|
||||
rev = self._get_rev(locked=locked)
|
||||
if rev in self._objs:
|
||||
return self._objs[rev]
|
||||
_, obj = self._get_used_and_obj(
|
||||
_, _, obj = self._get_used_and_obj(
|
||||
obj_only=True, filter_info=filter_info, **kwargs
|
||||
)
|
||||
return obj
|
||||
|
||||
def get_meta(self, filter_info=None, **kwargs):
|
||||
locked = kwargs.get("locked", True)
|
||||
rev = self._get_rev(locked=locked)
|
||||
if rev in self._meta:
|
||||
return self._meta[rev]
|
||||
_, meta, _ = self._get_used_and_obj(
|
||||
obj_only=True, filter_info=filter_info, **kwargs
|
||||
)
|
||||
return meta
|
||||
|
||||
def _make_repo(self, locked=True, **kwargs):
|
||||
from dvc.external_repo import external_repo
|
||||
|
||||
|
||||
+9
-9
@@ -172,7 +172,7 @@ class FileMixin:
|
||||
def dump(self, stage, **kwargs):
|
||||
raise NotImplementedError
|
||||
|
||||
def merge(self, ancestor, other):
|
||||
def merge(self, ancestor, other, allowed=None):
|
||||
raise NotImplementedError
|
||||
|
||||
|
||||
@@ -204,12 +204,12 @@ class SingleStageFile(FileMixin):
|
||||
def remove_stage(self, stage): # pylint: disable=unused-argument
|
||||
self.remove()
|
||||
|
||||
def merge(self, ancestor, other):
|
||||
def merge(self, ancestor, other, allowed=None):
|
||||
assert isinstance(ancestor, SingleStageFile)
|
||||
assert isinstance(other, SingleStageFile)
|
||||
|
||||
stage = self.stage
|
||||
stage.merge(ancestor.stage, other.stage)
|
||||
stage.merge(ancestor.stage, other.stage, allowed=allowed)
|
||||
self.dump(stage)
|
||||
|
||||
|
||||
@@ -237,10 +237,10 @@ class PipelineFile(FileMixin):
|
||||
self._dump_pipeline_file(stage)
|
||||
|
||||
if update_lock:
|
||||
self._dump_lockfile(stage)
|
||||
self._dump_lockfile(stage, **kwargs)
|
||||
|
||||
def _dump_lockfile(self, stage):
|
||||
self._lockfile.dump(stage)
|
||||
def _dump_lockfile(self, stage, **kwargs):
|
||||
self._lockfile.dump(stage, **kwargs)
|
||||
|
||||
@staticmethod
|
||||
def _check_if_parametrized(stage, action: str = "dump") -> None:
|
||||
@@ -310,7 +310,7 @@ class PipelineFile(FileMixin):
|
||||
else:
|
||||
super().remove()
|
||||
|
||||
def merge(self, ancestor, other):
|
||||
def merge(self, ancestor, other, allowed=None):
|
||||
raise NotImplementedError
|
||||
|
||||
|
||||
@@ -366,7 +366,7 @@ class Lockfile(FileMixin):
|
||||
return {SCHEMA_KWD: version}
|
||||
|
||||
def dump(self, stage, **kwargs):
|
||||
stage_data = serialize.to_lockfile(stage)
|
||||
stage_data = serialize.to_lockfile(stage, **kwargs)
|
||||
|
||||
with modify_yaml(self.path, fs=self.repo.fs) as data:
|
||||
version = LOCKFILE_VERSION.from_dict(data)
|
||||
@@ -411,7 +411,7 @@ class Lockfile(FileMixin):
|
||||
else:
|
||||
self.remove()
|
||||
|
||||
def merge(self, ancestor, other):
|
||||
def merge(self, ancestor, other, allowed=None):
|
||||
raise NotImplementedError
|
||||
|
||||
|
||||
|
||||
@@ -278,6 +278,11 @@ class PathMissingError(DvcException):
|
||||
self.dvc_only = dvc_only
|
||||
|
||||
|
||||
class URLMissingError(DvcException):
|
||||
def __init__(self, url):
|
||||
super().__init__(f"The path '{url}' does not exist")
|
||||
|
||||
|
||||
class RemoteCacheRequiredError(DvcException):
|
||||
def __init__(self, scheme, fs_path):
|
||||
|
||||
|
||||
+30
-9
@@ -2,6 +2,9 @@ from urllib.parse import urlparse
|
||||
|
||||
from dvc_http import HTTPFileSystem, HTTPSFileSystem # noqa: F401
|
||||
|
||||
from dvc.config import ConfigError as RepoConfigError
|
||||
from dvc.config_schema import SCHEMA, Invalid
|
||||
|
||||
# pylint: disable=unused-import
|
||||
from dvc_objects.fs import utils # noqa: F401
|
||||
from dvc_objects.fs import ( # noqa: F401
|
||||
@@ -23,6 +26,7 @@ from dvc_objects.fs.errors import ( # noqa: F401
|
||||
)
|
||||
from dvc_objects.fs.path import Path # noqa: F401
|
||||
|
||||
from .callbacks import Callback
|
||||
from .data import DataFileSystem # noqa: F401
|
||||
from .dvc import DVCFileSystem # noqa: F401
|
||||
from .git import GitFileSystem # noqa: F401
|
||||
@@ -44,7 +48,23 @@ known_implementations.update(
|
||||
# pylint: enable=unused-import
|
||||
|
||||
|
||||
def get_fs_config(repo, config, **kwargs):
|
||||
def download(fs, fs_path, to, jobs=None):
|
||||
with Callback.as_tqdm_callback(
|
||||
desc=f"Downloading {fs.path.name(fs_path)}",
|
||||
unit="files",
|
||||
) as cb:
|
||||
fs.get(fs_path, to.fs_path, batch_size=jobs, callback=cb)
|
||||
|
||||
|
||||
def parse_external_url(url, config=None):
|
||||
remote_config = dict(config) if config else {}
|
||||
remote_config["url"] = url
|
||||
fs_cls, fs_config, fs_path = get_cloud_fs(None, **remote_config)
|
||||
fs = fs_cls(**fs_config)
|
||||
return fs, fs_path
|
||||
|
||||
|
||||
def get_fs_config(config, **kwargs):
|
||||
name = kwargs.get("name")
|
||||
if name:
|
||||
try:
|
||||
@@ -55,10 +75,10 @@ def get_fs_config(repo, config, **kwargs):
|
||||
raise RemoteNotFoundError(f"remote '{name}' doesn't exist")
|
||||
else:
|
||||
remote_conf = kwargs
|
||||
return _resolve_remote_refs(repo, config, remote_conf)
|
||||
return _resolve_remote_refs(config, remote_conf)
|
||||
|
||||
|
||||
def _resolve_remote_refs(repo, config, remote_conf):
|
||||
def _resolve_remote_refs(config, remote_conf):
|
||||
# Support for cross referenced remotes.
|
||||
# This will merge the settings, shadowing base ref with remote_conf.
|
||||
# For example, having:
|
||||
@@ -84,21 +104,22 @@ def _resolve_remote_refs(repo, config, remote_conf):
|
||||
if parsed.scheme != "remote":
|
||||
return remote_conf
|
||||
|
||||
base = get_fs_config(repo, config, name=parsed.netloc)
|
||||
cls, _, _ = get_cloud_fs(repo, **base)
|
||||
base = get_fs_config(config, name=parsed.netloc)
|
||||
cls, _, _ = _get_cloud_fs(config, **base)
|
||||
relpath = parsed.path.lstrip("/").replace("/", cls.sep)
|
||||
url = cls.sep.join((base["url"], relpath))
|
||||
return {**base, **remote_conf, "url": url}
|
||||
|
||||
|
||||
def get_cloud_fs(repo, **kwargs):
|
||||
from dvc.config import ConfigError as RepoConfigError
|
||||
from dvc.config_schema import SCHEMA, Invalid
|
||||
|
||||
repo_config = repo.config if repo else {}
|
||||
return _get_cloud_fs(repo_config, **kwargs)
|
||||
|
||||
|
||||
def _get_cloud_fs(repo_config, **kwargs):
|
||||
core_config = repo_config.get("core", {})
|
||||
|
||||
remote_conf = get_fs_config(repo, repo_config, **kwargs)
|
||||
remote_conf = get_fs_config(repo_config, **kwargs)
|
||||
try:
|
||||
remote_conf = SCHEMA["remote"][str](remote_conf)
|
||||
except Invalid as exc:
|
||||
|
||||
+17
-5
@@ -1,6 +1,6 @@
|
||||
# pylint: disable=unused-import
|
||||
from contextlib import ExitStack
|
||||
from typing import TYPE_CHECKING, Optional
|
||||
from typing import TYPE_CHECKING, Any, BinaryIO, Dict, Optional, Union
|
||||
|
||||
from funcy import cached_property
|
||||
|
||||
@@ -24,6 +24,7 @@ class RichCallback(Callback):
|
||||
bytes: bool = False, # pylint: disable=redefined-builtin
|
||||
unit: str = None,
|
||||
disable: bool = False,
|
||||
transient: bool = True,
|
||||
) -> None:
|
||||
self._progress = progress
|
||||
self.disable = disable
|
||||
@@ -35,6 +36,7 @@ class RichCallback(Callback):
|
||||
"visible": False,
|
||||
"progress_type": None if bytes else "summary",
|
||||
}
|
||||
self._transient = transient
|
||||
self._stack = ExitStack()
|
||||
super().__init__(size=size, value=value)
|
||||
|
||||
@@ -47,7 +49,7 @@ class RichCallback(Callback):
|
||||
return self._progress
|
||||
|
||||
progress = RichTransferProgress(
|
||||
transient=True,
|
||||
transient=self._transient,
|
||||
disable=self.disable,
|
||||
console=ui.error_console,
|
||||
)
|
||||
@@ -61,7 +63,8 @@ class RichCallback(Callback):
|
||||
return self
|
||||
|
||||
def close(self):
|
||||
self.progress.clear_task(self.task)
|
||||
if self._transient:
|
||||
self.progress.clear_task(self.task)
|
||||
self._stack.close()
|
||||
|
||||
def call(self, hook_name=None, **kwargs):
|
||||
@@ -72,8 +75,17 @@ class RichCallback(Callback):
|
||||
visible=not self.disable,
|
||||
)
|
||||
|
||||
def branch(self, path_1, path_2, kwargs, child: Optional[Callback] = None):
|
||||
def branch(
|
||||
self,
|
||||
path_1: Union[str, BinaryIO],
|
||||
path_2: str,
|
||||
kwargs: Dict[str, Any],
|
||||
child: "Callback" = None,
|
||||
):
|
||||
child = child or RichCallback(
|
||||
progress=self.progress, desc=path_1, bytes=True
|
||||
progress=self.progress,
|
||||
desc=path_1 if isinstance(path_1, str) else path_2,
|
||||
bytes=True,
|
||||
transient=self._transient,
|
||||
)
|
||||
return super().branch(path_1, path_2, kwargs, child=child)
|
||||
|
||||
+38
-33
@@ -10,9 +10,7 @@ from typing import TYPE_CHECKING, Any, Callable, Optional, Tuple, Type, Union
|
||||
from fsspec.spec import AbstractFileSystem
|
||||
from funcy import cached_property, wrap_prop, wrap_with
|
||||
|
||||
from dvc.utils.fs import makedirs
|
||||
from dvc_objects.fs.base import FileSystem
|
||||
from dvc_objects.fs.callbacks import DEFAULT_CALLBACK
|
||||
from dvc_objects.fs.path import Path
|
||||
|
||||
from .data import DataFileSystem
|
||||
@@ -66,15 +64,7 @@ def _get_dvc_path(dvc_fs, subkey):
|
||||
|
||||
|
||||
class _DVCFileSystem(AbstractFileSystem): # pylint:disable=abstract-method
|
||||
"""DVC + git-tracked files fs.
|
||||
|
||||
Args:
|
||||
repo: DVC or git repo.
|
||||
subrepos: traverse to subrepos (by default, it ignores subrepos)
|
||||
repo_factory: A function to initialize subrepo with, default is Repo.
|
||||
kwargs: Additional keyword arguments passed to the `DataFileSystem()`.
|
||||
"""
|
||||
|
||||
cachable = False
|
||||
root_marker = "/"
|
||||
|
||||
def __init__(
|
||||
@@ -86,6 +76,41 @@ class _DVCFileSystem(AbstractFileSystem): # pylint:disable=abstract-method
|
||||
repo_factory: Optional[RepoFactory] = None,
|
||||
**repo_kwargs: Any,
|
||||
) -> None:
|
||||
"""DVC + git-tracked files fs.
|
||||
|
||||
Args:
|
||||
path (str, optional): URL or path to a DVC/Git repository.
|
||||
Defaults to a DVC repository in the current working directory.
|
||||
Both HTTP and SSH protocols are supported for remote Git repos
|
||||
(e.g. [user@]server:project.git).
|
||||
rev (str, optional): Any Git revision such as a branch or tag name,
|
||||
a commit hash or a dvc experiment name.
|
||||
Defaults to the default branch in case of remote repositories.
|
||||
In case of a local repository, if rev is unspecified, it will
|
||||
default to the working directory.
|
||||
If the repo is not a Git repo, this option is ignored.
|
||||
repo (:obj:`Repo`, optional): `Repo` instance.
|
||||
subrepos (bool): traverse to subrepos.
|
||||
By default, it ignores subrepos.
|
||||
repo_factory (callable): A function to initialize subrepo with.
|
||||
The default is `Repo`.
|
||||
|
||||
Examples:
|
||||
- Opening a filesystem from repo in current working directory
|
||||
|
||||
>>> fs = DVCFileSystem()
|
||||
|
||||
- Opening a filesystem from local repository
|
||||
|
||||
>>> fs = DVCFileSystem("path/to/local/repository")
|
||||
|
||||
- Opening a remote repository
|
||||
|
||||
>>> fs = DVCFileSystem(
|
||||
... "https://github.com/iterative/example-get-started",
|
||||
... rev="main",
|
||||
... )
|
||||
"""
|
||||
from pygtrie import Trie
|
||||
|
||||
super().__init__()
|
||||
@@ -238,7 +263,8 @@ class _DVCFileSystem(AbstractFileSystem): # pylint:disable=abstract-method
|
||||
dvc_path = _get_dvc_path(dvc_fs, subkey)
|
||||
return dvc_fs.open(dvc_path, mode=mode)
|
||||
|
||||
def isdvc(self, path, **kwargs):
|
||||
def isdvc(self, path, **kwargs) -> bool:
|
||||
"""Is this entry dvc-tracked?"""
|
||||
key = self._get_key_from_relative(path)
|
||||
_, dvc_fs, subkey = self._get_subrepo_info(key)
|
||||
dvc_path = _get_dvc_path(dvc_fs, subkey)
|
||||
@@ -295,27 +321,6 @@ class _DVCFileSystem(AbstractFileSystem): # pylint:disable=abstract-method
|
||||
|
||||
return infos
|
||||
|
||||
def get_file( # pylint: disable=arguments-differ
|
||||
self, rpath, lpath, callback=DEFAULT_CALLBACK, **kwargs
|
||||
):
|
||||
key = self._get_key_from_relative(rpath)
|
||||
fs_path = self._from_key(key)
|
||||
fs = self.repo.fs
|
||||
|
||||
if self.isdir(rpath):
|
||||
makedirs(lpath, exist_ok=True)
|
||||
return None
|
||||
|
||||
try:
|
||||
fs.get_file(fs_path, lpath, callback=callback, **kwargs)
|
||||
return
|
||||
except FileNotFoundError:
|
||||
_, dvc_fs, subkey = self._get_subrepo_info(key)
|
||||
if not dvc_fs:
|
||||
raise
|
||||
dvc_path = _get_dvc_path(dvc_fs, subkey)
|
||||
dvc_fs.get_file(dvc_path, lpath, callback=callback, **kwargs)
|
||||
|
||||
def info(self, path, **kwargs):
|
||||
key = self._get_key_from_relative(path)
|
||||
ignore_subrepos = kwargs.get("ignore_subrepos", True)
|
||||
|
||||
+16
-3
@@ -300,12 +300,25 @@ class DvcIgnoreFilter:
|
||||
return [fs_dict[name] for name in chain(dirs, nondirs)]
|
||||
|
||||
def walk(self, fs: FileSystem, path: AnyFSPath, **kwargs):
|
||||
detail = kwargs.get("detail", False)
|
||||
ignore_subrepos = kwargs.pop("ignore_subrepos", True)
|
||||
if fs.protocol == Schemes.LOCAL:
|
||||
for root, dirs, files in fs.walk(path, **kwargs):
|
||||
dirs[:], files[:] = self(
|
||||
root, dirs, files, ignore_subrepos=ignore_subrepos
|
||||
)
|
||||
if detail:
|
||||
all_dnames = set(dirs.keys())
|
||||
all_fnames = set(files.keys())
|
||||
dnames, fnames = self(
|
||||
root,
|
||||
all_dnames,
|
||||
all_fnames,
|
||||
ignore_subrepos=ignore_subrepos,
|
||||
)
|
||||
list(map(dirs.pop, all_dnames - set(dnames)))
|
||||
list(map(files.pop, all_fnames - set(fnames)))
|
||||
else:
|
||||
dirs[:], files[:] = self(
|
||||
root, dirs, files, ignore_subrepos=ignore_subrepos
|
||||
)
|
||||
yield root, dirs, files
|
||||
else:
|
||||
yield from fs.walk(path, **kwargs)
|
||||
|
||||
+1
-1
@@ -76,7 +76,7 @@ def _get_caches(cache):
|
||||
|
||||
def _get_remotes(config):
|
||||
schemes = (
|
||||
get_fs_cls(get_fs_config(None, config, name=remote)).protocol
|
||||
get_fs_cls(get_fs_config(config, name=remote)).protocol
|
||||
for remote in config["remote"]
|
||||
)
|
||||
|
||||
|
||||
+5
-2
@@ -213,8 +213,6 @@ def set_loggers_level(level: int = logging.INFO) -> None:
|
||||
|
||||
|
||||
def setup(level: int = logging.INFO) -> None:
|
||||
colorama.init()
|
||||
|
||||
if level >= logging.DEBUG:
|
||||
# Unclosed session errors for asyncio/aiohttp are only available
|
||||
# on the tracing mode for extensive debug purposes. They are really
|
||||
@@ -297,3 +295,8 @@ def setup(level: int = logging.INFO) -> None:
|
||||
"disable_existing_loggers": False,
|
||||
}
|
||||
)
|
||||
|
||||
# NOTE: colorama init needs to go after logging config to avoid potential
|
||||
# conflicts with libs that modify logging (like tensorflow/abseil)
|
||||
# https://github.com/iterative/dvc/issues/8387
|
||||
colorama.init()
|
||||
|
||||
+35
-21
@@ -26,10 +26,12 @@ from dvc_data.hashfile.hash_info import HashInfo
|
||||
from dvc_data.hashfile.istextfile import istextfile
|
||||
from dvc_data.hashfile.meta import Meta
|
||||
from dvc_data.hashfile.transfer import transfer as otransfer
|
||||
from dvc_data.index import DataIndexEntry
|
||||
from dvc_objects.errors import ObjectFormatError
|
||||
|
||||
from .annotations import ANNOTATION_FIELDS, ANNOTATION_SCHEMA, Annotation
|
||||
from .fs import LocalFileSystem, RemoteMissingDepsError, Schemes, get_cloud_fs
|
||||
from .fs.callbacks import DEFAULT_CALLBACK
|
||||
from .utils import relpath
|
||||
from .utils.fs import path_isin
|
||||
|
||||
@@ -38,6 +40,8 @@ if TYPE_CHECKING:
|
||||
from dvc_data.index import DataIndexKey
|
||||
from dvc_objects.db import ObjectDB
|
||||
|
||||
from .fs.callbacks import Callback
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
@@ -511,6 +515,23 @@ class Output:
|
||||
key = self.fs.path.parts(no_drive)[1:]
|
||||
return workspace, key
|
||||
|
||||
def get_entry(self) -> "DataIndexEntry":
|
||||
from dvc.config import NoRemoteError
|
||||
|
||||
try:
|
||||
remote = self.repo.cloud.get_remote_odb(self.remote)
|
||||
except NoRemoteError:
|
||||
remote = None
|
||||
|
||||
return DataIndexEntry(
|
||||
meta=self.meta,
|
||||
obj=self.obj,
|
||||
hash_info=self.hash_info,
|
||||
odb=self.odb,
|
||||
cache=self.odb,
|
||||
remote=remote,
|
||||
)
|
||||
|
||||
def changed_checksum(self):
|
||||
return self.hash_info != self.get_hash()
|
||||
|
||||
@@ -530,7 +551,7 @@ class Output:
|
||||
|
||||
def changed_meta(self) -> bool:
|
||||
if self.fs.version_aware and self.meta.version_id:
|
||||
return self.meta.version_id == self.get_meta().version_id
|
||||
return self.meta.version_id != self.get_meta().version_id
|
||||
return False
|
||||
|
||||
def workspace_status(self):
|
||||
@@ -765,11 +786,8 @@ class Output:
|
||||
if self.remote:
|
||||
ret[self.PARAM_REMOTE] = self.remote
|
||||
|
||||
if (
|
||||
self.use_cache
|
||||
and self.is_in_repo
|
||||
and self.hash_info.isdir
|
||||
and (kwargs.get("with_files") or self.files is not None)
|
||||
if self.hash_info.isdir and (
|
||||
kwargs.get("with_files") or self.files is not None
|
||||
):
|
||||
if self.obj:
|
||||
obj = self.obj
|
||||
@@ -800,15 +818,6 @@ class Output:
|
||||
f"binary file '{self.fs_path}' cannot be used as metrics."
|
||||
)
|
||||
|
||||
def download(self, to, jobs=None):
|
||||
from dvc.fs.callbacks import Callback
|
||||
|
||||
with Callback.as_tqdm_callback(
|
||||
desc=f"Downloading {self.fs.path.name(self.fs_path)}",
|
||||
unit="files",
|
||||
) as cb:
|
||||
self.fs.get(self.fs_path, to.fs_path, batch_size=jobs, callback=cb)
|
||||
|
||||
def get_obj(
|
||||
self, filter_info: Optional[str] = None, **kwargs
|
||||
) -> Optional["HashFile"]:
|
||||
@@ -828,6 +837,7 @@ class Output:
|
||||
else:
|
||||
return None
|
||||
|
||||
assert obj
|
||||
fs_path = self.fs.path
|
||||
if filter_info and filter_info != self.fs_path:
|
||||
prefix = fs_path.relparts(filter_info, self.fs_path)
|
||||
@@ -838,7 +848,7 @@ class Output:
|
||||
def checkout(
|
||||
self,
|
||||
force=False,
|
||||
progress_callback=None,
|
||||
progress_callback: "Callback" = DEFAULT_CALLBACK,
|
||||
relink=False,
|
||||
filter_info=None,
|
||||
allow_missing=False,
|
||||
@@ -846,9 +856,9 @@ class Output:
|
||||
**kwargs,
|
||||
):
|
||||
if not self.use_cache:
|
||||
if progress_callback:
|
||||
progress_callback(
|
||||
self.fs_path, self.get_files_number(filter_info)
|
||||
if progress_callback != DEFAULT_CALLBACK:
|
||||
progress_callback.relative_update(
|
||||
self.get_files_number(filter_info)
|
||||
)
|
||||
return None
|
||||
|
||||
@@ -1127,7 +1137,7 @@ class Output:
|
||||
"unable to auto-merge outputs that are not directories"
|
||||
)
|
||||
|
||||
def merge(self, ancestor, other):
|
||||
def merge(self, ancestor, other, allowed=None):
|
||||
from dvc_data.hashfile.tree import MergeError as TreeMergeError
|
||||
from dvc_data.hashfile.tree import du, merge
|
||||
|
||||
@@ -1144,7 +1154,11 @@ class Output:
|
||||
|
||||
try:
|
||||
merged = merge(
|
||||
self.odb, ancestor_info, self.hash_info, other.hash_info
|
||||
self.odb,
|
||||
ancestor_info,
|
||||
self.hash_info,
|
||||
other.hash_info,
|
||||
allowed=allowed,
|
||||
)
|
||||
except TreeMergeError as exc:
|
||||
raise MergeError(str(exc)) from exc
|
||||
|
||||
@@ -2,7 +2,13 @@ import json
|
||||
from collections import defaultdict
|
||||
from typing import Dict, List, Union
|
||||
|
||||
from dvc.render import REVISION_FIELD, REVISIONS_KEY, SRC_FIELD, TYPE_KEY
|
||||
from dvc.render import (
|
||||
REVISION_FIELD,
|
||||
REVISIONS_KEY,
|
||||
SRC_FIELD,
|
||||
TYPE_KEY,
|
||||
VERSION_FIELD,
|
||||
)
|
||||
from dvc.render.converter.image import ImageConverter
|
||||
from dvc.render.converter.vega import VegaConverter
|
||||
|
||||
@@ -23,7 +29,7 @@ def _get_converter(
|
||||
def _group_by_rev(datapoints):
|
||||
grouped = defaultdict(list)
|
||||
for datapoint in datapoints:
|
||||
rev = datapoint.pop(REVISION_FIELD)
|
||||
rev = datapoint.get(VERSION_FIELD, {}).get("revision")
|
||||
grouped[rev].append(datapoint)
|
||||
return dict(grouped)
|
||||
|
||||
|
||||
@@ -127,13 +127,20 @@ class VegaConverter(Converter):
|
||||
),
|
||||
)
|
||||
)
|
||||
self.steps.append(
|
||||
(
|
||||
"infer_y",
|
||||
partial(
|
||||
self._infer_y,
|
||||
),
|
||||
)
|
||||
)
|
||||
|
||||
self.steps.append(
|
||||
(
|
||||
"generate_y",
|
||||
partial(
|
||||
self._generate_y_values,
|
||||
y_values=self.plot_properties.get("y", None),
|
||||
),
|
||||
)
|
||||
)
|
||||
@@ -156,7 +163,7 @@ class VegaConverter(Converter):
|
||||
} - {None}
|
||||
self.inferred_properties["fields"] = fields
|
||||
|
||||
def _infer_y(self, datapoints: List[Dict]):
|
||||
def _infer_y(self, datapoints: List[Dict], **kwargs):
|
||||
if "y" not in self.plot_properties:
|
||||
data_fields = list(first(datapoints))
|
||||
skip = (
|
||||
@@ -178,6 +185,7 @@ class VegaConverter(Converter):
|
||||
)
|
||||
else:
|
||||
self.inferred_properties["y"] = inferred_y
|
||||
return datapoints
|
||||
|
||||
def convert(
|
||||
self,
|
||||
@@ -197,7 +205,6 @@ class VegaConverter(Converter):
|
||||
processed = deepcopy(data)
|
||||
|
||||
for step_name, step in self.steps:
|
||||
|
||||
if step_name not in skip:
|
||||
processed = step( # type: ignore
|
||||
processed,
|
||||
@@ -205,25 +212,28 @@ class VegaConverter(Converter):
|
||||
filename=filename,
|
||||
)
|
||||
|
||||
self._infer_y(processed) # type: ignore
|
||||
return processed, {**self.plot_properties, **self.inferred_properties}
|
||||
|
||||
def _generate_y_values( # noqa: C901
|
||||
self,
|
||||
datapoints: List[Dict],
|
||||
y_values: Optional[Union[str, List, Dict]],
|
||||
revision: str,
|
||||
filename: str,
|
||||
**kwargs,
|
||||
) -> List[Dict]:
|
||||
|
||||
y_values = self.plot_properties.get(
|
||||
"y", None
|
||||
) or self.inferred_properties.get("y", None)
|
||||
|
||||
assert y_values is not None
|
||||
|
||||
result = []
|
||||
properties_update = {}
|
||||
|
||||
def _add_version_info(datapoint, version_info):
|
||||
tmp = datapoint.copy()
|
||||
tmp[VERSION_FIELD] = version_info
|
||||
tmp[REVISION_FIELD] = version_info["revision"]
|
||||
return tmp
|
||||
|
||||
def _version_info(revision, filename=None, field=None):
|
||||
@@ -250,12 +260,6 @@ class VegaConverter(Converter):
|
||||
|
||||
return tmp
|
||||
|
||||
if not y_values:
|
||||
for dp in datapoints:
|
||||
result.append(
|
||||
_add_version_info(dp, _version_info(revision, filename))
|
||||
)
|
||||
|
||||
if isinstance(y_values, str):
|
||||
for datapoint in datapoints:
|
||||
result.append(
|
||||
@@ -290,13 +294,15 @@ class VegaConverter(Converter):
|
||||
):
|
||||
# if we use the same field from all files,
|
||||
# we dont have to generate it
|
||||
y_field = all_fields.pop()
|
||||
for datapoint in datapoints:
|
||||
result.append(
|
||||
_add_version_info(
|
||||
datapoint, _version_info(revision, filename)
|
||||
datapoint,
|
||||
_version_info(revision, filename, y_field),
|
||||
)
|
||||
)
|
||||
properties_update.update({"y": all_fields.pop()})
|
||||
properties_update.update({"y": y_field})
|
||||
else:
|
||||
for def_filename, val in y_values.items():
|
||||
if isinstance(val, str):
|
||||
|
||||
+3
-40
@@ -3,7 +3,7 @@ import os
|
||||
from collections import defaultdict
|
||||
from contextlib import contextmanager
|
||||
from functools import wraps
|
||||
from typing import TYPE_CHECKING, Callable, List, Optional
|
||||
from typing import TYPE_CHECKING, Callable, Optional
|
||||
|
||||
from funcy import cached_property
|
||||
|
||||
@@ -18,7 +18,6 @@ if TYPE_CHECKING:
|
||||
from dvc.fs import FileSystem
|
||||
from dvc.repo.scm_context import SCMContext
|
||||
from dvc.scm import Base
|
||||
from dvc.stage import Stage
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
@@ -68,6 +67,7 @@ class Repo:
|
||||
from dvc.repo.imp_url import imp_url # type: ignore[misc]
|
||||
from dvc.repo.install import install # type: ignore[misc]
|
||||
from dvc.repo.ls import ls as _ls # type: ignore[misc]
|
||||
from dvc.repo.ls_url import ls_url as _ls_url # type: ignore[misc]
|
||||
from dvc.repo.move import move # type: ignore[misc]
|
||||
from dvc.repo.pull import pull # type: ignore[misc]
|
||||
from dvc.repo.push import push # type: ignore[misc]
|
||||
@@ -80,6 +80,7 @@ class Repo:
|
||||
from .data import status as data_status # type: ignore[misc]
|
||||
|
||||
ls = staticmethod(_ls)
|
||||
ls_url = staticmethod(_ls_url)
|
||||
get = staticmethod(_get)
|
||||
get_url = staticmethod(_get_url)
|
||||
|
||||
@@ -445,44 +446,6 @@ class Repo:
|
||||
|
||||
return used
|
||||
|
||||
def partial_imports(
|
||||
self,
|
||||
targets=None,
|
||||
all_branches=False,
|
||||
all_tags=False,
|
||||
all_commits=False,
|
||||
all_experiments=False,
|
||||
commit_date: Optional[str] = None,
|
||||
recursive=False,
|
||||
revs=None,
|
||||
num=1,
|
||||
) -> List["Stage"]:
|
||||
"""Get the stages related to the given target and collect dependencies
|
||||
which are missing outputs.
|
||||
|
||||
This is useful to retrieve files which have been imported to the repo
|
||||
using --no-download.
|
||||
|
||||
Returns:
|
||||
A list of partially imported stages
|
||||
"""
|
||||
from itertools import chain
|
||||
|
||||
partial_imports = chain.from_iterable(
|
||||
self.index.partial_imports(targets, recursive=recursive)
|
||||
for _ in self.brancher(
|
||||
revs=revs,
|
||||
all_branches=all_branches,
|
||||
all_tags=all_tags,
|
||||
all_commits=all_commits,
|
||||
all_experiments=all_experiments,
|
||||
commit_date=commit_date,
|
||||
num=num,
|
||||
)
|
||||
)
|
||||
|
||||
return list(partial_imports)
|
||||
|
||||
@property
|
||||
def stages(self): # obsolete, only for backward-compatibility
|
||||
return self.index.stages
|
||||
|
||||
@@ -77,6 +77,7 @@ def brancher( # noqa: E302
|
||||
from dvc.fs import GitFileSystem
|
||||
|
||||
for sha, names in found_revs.items():
|
||||
self.__dict__.pop("index", None)
|
||||
self.fs = GitFileSystem(scm=scm, rev=sha)
|
||||
self.root_dir = self.fs.path.join("/", *repo_root_parts)
|
||||
|
||||
|
||||
@@ -7,7 +7,6 @@ from dvc.exceptions import (
|
||||
CheckoutErrorSuggestGit,
|
||||
NoOutputOrStageError,
|
||||
)
|
||||
from dvc.progress import Tqdm
|
||||
from dvc.utils import relpath
|
||||
|
||||
from . import locked
|
||||
@@ -80,6 +79,7 @@ def checkout(
|
||||
allow_missing=False,
|
||||
**kwargs,
|
||||
):
|
||||
from dvc.fs.callbacks import Callback
|
||||
|
||||
stats = {"added": [], "deleted": [], "modified": [], "failed": []}
|
||||
if not targets:
|
||||
@@ -91,13 +91,16 @@ def checkout(
|
||||
|
||||
pairs = _collect_pairs(self, targets, with_deps, recursive)
|
||||
total = get_all_files_numbers(pairs)
|
||||
with Tqdm(
|
||||
total=total, unit="file", desc="Checkout", disable=total == 0
|
||||
) as pbar:
|
||||
with Callback.as_tqdm_callback(
|
||||
unit="file",
|
||||
desc="Checkout",
|
||||
disable=total == 0,
|
||||
) as cb:
|
||||
cb.set_size(total)
|
||||
for stage, filter_info in pairs:
|
||||
result = stage.checkout(
|
||||
force=force,
|
||||
progress_callback=pbar.update_msg,
|
||||
progress_callback=cb,
|
||||
relink=relink,
|
||||
filter_info=filter_info,
|
||||
allow_missing=allow_missing,
|
||||
|
||||
@@ -2,7 +2,7 @@ import logging
|
||||
import os
|
||||
import re
|
||||
import time
|
||||
from typing import Any, Dict, Iterable, Optional
|
||||
from typing import Dict, Iterable, Optional
|
||||
|
||||
from funcy import cached_property, first
|
||||
|
||||
@@ -16,7 +16,7 @@ from .exceptions import (
|
||||
InvalidExpRefError,
|
||||
MultipleBranchError,
|
||||
)
|
||||
from .executor.base import BaseExecutor, ExecutorInfo
|
||||
from .executor.base import BaseExecutor
|
||||
from .queue.base import BaseStashQueue, QueueEntry
|
||||
from .queue.celery import LocalCeleryQueue
|
||||
from .queue.tempdir import TempDirQueue
|
||||
@@ -25,7 +25,6 @@ from .refs import (
|
||||
CELERY_FAILED_STASH,
|
||||
CELERY_STASH,
|
||||
EXEC_APPLY,
|
||||
EXEC_BRANCH,
|
||||
EXEC_CHECKPOINT,
|
||||
EXEC_NAMESPACE,
|
||||
EXPS_NAMESPACE,
|
||||
@@ -211,8 +210,9 @@ class Experiments:
|
||||
|
||||
def _log_reproduced(self, revs: Iterable[str], tmp_dir: bool = False):
|
||||
names = []
|
||||
rev_names = self.get_exact_name(revs)
|
||||
for rev in revs:
|
||||
name = self.get_exact_name(rev)
|
||||
name = rev_names[rev]
|
||||
names.append(name if name else rev[:7])
|
||||
ui.write("\nRan experiment(s): {}".format(", ".join(names)))
|
||||
if tmp_dir:
|
||||
@@ -411,86 +411,41 @@ class Experiments:
|
||||
raise MultipleBranchError(rev, ref_infos)
|
||||
return str(ref_infos[0])
|
||||
|
||||
def get_exact_name(self, rev: str):
|
||||
def get_exact_name(self, revs: Iterable[str]) -> Dict[str, Optional[str]]:
|
||||
"""Returns preferred name for the specified revision.
|
||||
|
||||
Prefers tags, branches (heads), experiments in that orer.
|
||||
"""
|
||||
result: Dict[str, Optional[str]] = {}
|
||||
exclude = f"{EXEC_NAMESPACE}/*"
|
||||
ref = self.scm.describe(rev, base=EXPS_NAMESPACE, exclude=exclude)
|
||||
if ref:
|
||||
try:
|
||||
name = ExpRefInfo.from_ref(ref).name
|
||||
if name:
|
||||
return name
|
||||
except InvalidExpRefError:
|
||||
pass
|
||||
if rev in self.stash_revs:
|
||||
return self.stash_revs[rev].name
|
||||
return None
|
||||
|
||||
def get_running_exps(self, fetch_refs: bool = True) -> Dict[str, Any]:
|
||||
"""Return info for running experiments."""
|
||||
result = {}
|
||||
infofile = self.workspace_queue.get_infofile_path("workspace")
|
||||
result.update(
|
||||
self._fetch_running_exp("workspace", infofile, fetch_refs)
|
||||
ref_dict = self.scm.describe(
|
||||
revs, base=EXPS_NAMESPACE, exclude=exclude
|
||||
)
|
||||
for queue in (self.tempdir_queue, self.celery_queue):
|
||||
for entry in queue.iter_active():
|
||||
infofile = queue.get_infofile_path(entry.stash_rev)
|
||||
result.update(
|
||||
self._fetch_running_exp(
|
||||
entry.stash_rev, infofile, fetch_refs
|
||||
)
|
||||
)
|
||||
for rev in revs:
|
||||
name: Optional[str] = None
|
||||
ref = ref_dict[rev]
|
||||
if ref:
|
||||
try:
|
||||
name = ExpRefInfo.from_ref(ref).name
|
||||
except InvalidExpRefError:
|
||||
pass
|
||||
if not name:
|
||||
if rev in self.stash_revs:
|
||||
name = self.stash_revs[rev].name
|
||||
elif rev in self.celery_queue.failed_stash.stash_revs:
|
||||
name = self.celery_queue.failed_stash.stash_revs[rev].name
|
||||
result[rev] = name
|
||||
return result
|
||||
|
||||
def _fetch_running_exp(
|
||||
self, rev: str, infofile: str, fetch_refs: bool
|
||||
) -> Dict[str, Any]:
|
||||
from dvc.scm import InvalidRemoteSCMRepo
|
||||
from dvc.utils.serialize import load_json
|
||||
|
||||
from .executor.local import TempDirExecutor
|
||||
|
||||
result: Dict[str, Any] = {}
|
||||
try:
|
||||
info = ExecutorInfo.from_dict(load_json(infofile))
|
||||
except OSError:
|
||||
return result
|
||||
if info.result is None:
|
||||
if rev == "workspace":
|
||||
# If we are appending to a checkpoint branch in a workspace
|
||||
# run, show the latest checkpoint as running.
|
||||
last_rev = self.scm.get_ref(EXEC_BRANCH)
|
||||
if last_rev:
|
||||
result[last_rev] = info.asdict()
|
||||
else:
|
||||
result[rev] = info.asdict()
|
||||
else:
|
||||
result[rev] = info.asdict()
|
||||
if info.git_url and fetch_refs:
|
||||
|
||||
def on_diverged(_ref: str, _checkpoint: bool):
|
||||
return False
|
||||
|
||||
executor = TempDirExecutor.from_info(info)
|
||||
try:
|
||||
for ref in executor.fetch_exps(
|
||||
self.scm,
|
||||
on_diverged=on_diverged,
|
||||
):
|
||||
logger.debug(
|
||||
"Updated running experiment '%s'.", ref
|
||||
)
|
||||
last_rev = self.scm.get_ref(ref)
|
||||
result[rev]["last"] = last_rev
|
||||
if last_rev:
|
||||
result[last_rev] = info.asdict()
|
||||
except InvalidRemoteSCMRepo:
|
||||
# ignore stale info files
|
||||
del result[rev]
|
||||
def get_running_exps(self, fetch_refs: bool = True) -> Dict[str, Dict]:
|
||||
"""Return info for running experiments."""
|
||||
result = {}
|
||||
for queue in (
|
||||
self.workspace_queue,
|
||||
self.tempdir_queue,
|
||||
self.celery_queue,
|
||||
):
|
||||
result.update(queue.get_running_exps(fetch_refs))
|
||||
return result
|
||||
|
||||
def apply(self, *args, **kwargs):
|
||||
|
||||
@@ -4,6 +4,7 @@ import pickle
|
||||
from abc import ABC, abstractmethod
|
||||
from contextlib import contextmanager
|
||||
from dataclasses import asdict, dataclass
|
||||
from enum import IntEnum
|
||||
from functools import partial
|
||||
from typing import (
|
||||
TYPE_CHECKING,
|
||||
@@ -19,6 +20,8 @@ from typing import (
|
||||
Union,
|
||||
)
|
||||
|
||||
from scmrepo.exceptions import SCMError
|
||||
|
||||
from dvc.env import DVC_EXP_AUTO_PUSH, DVC_EXP_GIT_REMOTE
|
||||
from dvc.exceptions import DvcException
|
||||
from dvc.stage.serialize import to_lockfile
|
||||
@@ -35,6 +38,8 @@ from ..refs import (
|
||||
EXEC_BASELINE,
|
||||
EXEC_BRANCH,
|
||||
EXEC_CHECKPOINT,
|
||||
EXEC_HEAD,
|
||||
EXEC_MERGE,
|
||||
EXEC_NAMESPACE,
|
||||
EXPS_NAMESPACE,
|
||||
EXPS_STASH,
|
||||
@@ -47,10 +52,9 @@ if TYPE_CHECKING:
|
||||
from scmrepo.git import Git
|
||||
|
||||
from dvc.repo import Repo
|
||||
from dvc.repo.experiments.stash import ExpStashEntry
|
||||
from dvc.stage import PipelineStage
|
||||
|
||||
from ..base import ExpStashEntry
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
@@ -64,6 +68,16 @@ class ExecutorResult(NamedTuple):
|
||||
force: bool
|
||||
|
||||
|
||||
class TaskStatus(IntEnum):
|
||||
PENDING = 0
|
||||
PREPARING = 1
|
||||
RUNNING = 2
|
||||
SUCCESS = 3
|
||||
FAILED = 4
|
||||
CANCELED = 5
|
||||
FINISHED = 6
|
||||
|
||||
|
||||
@dataclass
|
||||
class ExecutorInfo:
|
||||
git_url: str
|
||||
@@ -73,13 +87,16 @@ class ExecutorInfo:
|
||||
dvc_dir: str
|
||||
name: Optional[str] = None
|
||||
wdir: Optional[str] = None
|
||||
collected: bool = False
|
||||
result_hash: Optional[str] = None
|
||||
result_ref: Optional[str] = None
|
||||
result_force: bool = False
|
||||
status: TaskStatus = TaskStatus.PENDING
|
||||
|
||||
@classmethod
|
||||
def from_dict(cls, d):
|
||||
if "collected" in d:
|
||||
if d.pop("collected"):
|
||||
d["status"] = TaskStatus.FINISHED
|
||||
return cls(**d)
|
||||
|
||||
def asdict(self):
|
||||
@@ -136,6 +153,7 @@ class BaseExecutor(ABC):
|
||||
root_dir: str,
|
||||
dvc_dir: str,
|
||||
baseline_rev: str,
|
||||
status: TaskStatus,
|
||||
wdir: Optional[str] = None,
|
||||
name: Optional[str] = None,
|
||||
location: Optional[str] = None,
|
||||
@@ -149,9 +167,17 @@ class BaseExecutor(ABC):
|
||||
self.baseline_rev = baseline_rev
|
||||
self.location: str = location or self.DEFAULT_LOCATION
|
||||
self.result = result
|
||||
self.status = status
|
||||
|
||||
@abstractmethod
|
||||
def init_git(self, scm: "Git", branch: Optional[str] = None):
|
||||
def init_git(
|
||||
self,
|
||||
scm: "Git",
|
||||
stash_rev: str,
|
||||
entry: "ExpStashEntry",
|
||||
infofile: Optional[str],
|
||||
branch: Optional[str] = None,
|
||||
):
|
||||
"""Init git repo and populate it using exp refs from the specified
|
||||
SCM instance.
|
||||
"""
|
||||
@@ -191,6 +217,7 @@ class BaseExecutor(ABC):
|
||||
dvc_dir=self.dvc_dir,
|
||||
name=self.name,
|
||||
wdir=self.wdir,
|
||||
status=self.status,
|
||||
**result_dict,
|
||||
)
|
||||
|
||||
@@ -212,6 +239,7 @@ class BaseExecutor(ABC):
|
||||
root_dir=info.root_dir,
|
||||
dvc_dir=info.dvc_dir,
|
||||
baseline_rev=info.baseline_rev,
|
||||
status=info.status,
|
||||
name=info.name,
|
||||
wdir=info.wdir,
|
||||
result=result,
|
||||
@@ -222,7 +250,6 @@ class BaseExecutor(ABC):
|
||||
def from_stash_entry(
|
||||
cls: Type[_T],
|
||||
repo: "Repo",
|
||||
stash_rev: str,
|
||||
entry: "ExpStashEntry",
|
||||
**kwargs,
|
||||
) -> _T:
|
||||
@@ -232,7 +259,6 @@ class BaseExecutor(ABC):
|
||||
def _from_stash_entry(
|
||||
cls: Type[_T],
|
||||
repo: "Repo",
|
||||
stash_rev: str,
|
||||
entry: "ExpStashEntry",
|
||||
root_dir: str,
|
||||
**kwargs,
|
||||
@@ -241,12 +267,11 @@ class BaseExecutor(ABC):
|
||||
root_dir=root_dir,
|
||||
dvc_dir=relpath(repo.dvc_dir, repo.scm.root_dir),
|
||||
baseline_rev=entry.baseline_rev,
|
||||
status=TaskStatus.PREPARING,
|
||||
name=entry.name,
|
||||
wdir=relpath(os.getcwd(), repo.scm.root_dir),
|
||||
**kwargs,
|
||||
)
|
||||
executor.init_git(repo.scm, branch=entry.branch)
|
||||
executor.init_cache(repo, stash_rev)
|
||||
return executor
|
||||
|
||||
@staticmethod
|
||||
@@ -259,8 +284,12 @@ class BaseExecutor(ABC):
|
||||
exp_data.update(to_lockfile(stage))
|
||||
return dict_sha256(exp_data)
|
||||
|
||||
def cleanup(self):
|
||||
pass
|
||||
def cleanup(self, infofile: str):
|
||||
if infofile is not None:
|
||||
info = ExecutorInfo.load_json(infofile)
|
||||
if info.status < TaskStatus.FAILED:
|
||||
info.status = TaskStatus.FINISHED
|
||||
info.dump_json(infofile)
|
||||
|
||||
# TODO: come up with better way to stash repro arguments
|
||||
@staticmethod
|
||||
@@ -324,30 +353,35 @@ class BaseExecutor(ABC):
|
||||
logger.debug("Replacing existing experiment '%s'", orig_ref)
|
||||
return True
|
||||
|
||||
if on_diverged:
|
||||
return on_diverged(orig_ref, has_checkpoint)
|
||||
|
||||
self._raise_ref_conflict(
|
||||
dest_scm, orig_ref, new_rev, has_checkpoint
|
||||
)
|
||||
if on_diverged:
|
||||
on_diverged(orig_ref, has_checkpoint)
|
||||
logger.debug("Reproduced existing experiment '%s'", orig_ref)
|
||||
return False
|
||||
|
||||
# fetch experiments
|
||||
dest_scm.fetch_refspecs(
|
||||
self.git_url,
|
||||
[f"{ref}:{ref}" for ref in refs],
|
||||
on_diverged=on_diverged_ref,
|
||||
force=force,
|
||||
**kwargs,
|
||||
)
|
||||
# update last run checkpoint (if it exists)
|
||||
if has_checkpoint:
|
||||
try:
|
||||
dest_scm.fetch_refspecs(
|
||||
self.git_url,
|
||||
[f"{EXEC_CHECKPOINT}:{EXEC_CHECKPOINT}"],
|
||||
force=True,
|
||||
[f"{ref}:{ref}" for ref in refs],
|
||||
on_diverged=on_diverged_ref,
|
||||
force=force,
|
||||
**kwargs,
|
||||
)
|
||||
# update last run checkpoint (if it exists)
|
||||
if has_checkpoint:
|
||||
dest_scm.fetch_refspecs(
|
||||
self.git_url,
|
||||
[f"{EXEC_CHECKPOINT}:{EXEC_CHECKPOINT}"],
|
||||
force=True,
|
||||
**kwargs,
|
||||
)
|
||||
except SCMError:
|
||||
pass
|
||||
|
||||
return refs
|
||||
|
||||
@classmethod
|
||||
@@ -411,11 +445,9 @@ class BaseExecutor(ABC):
|
||||
exp_ref: Optional["ExpRefInfo"] = None
|
||||
repro_force: bool = False
|
||||
|
||||
if infofile is not None:
|
||||
info.dump_json(infofile)
|
||||
|
||||
with cls._repro_dvc(
|
||||
info,
|
||||
infofile,
|
||||
log_errors=log_errors,
|
||||
**kwargs,
|
||||
) as dvc:
|
||||
@@ -491,9 +523,6 @@ class BaseExecutor(ABC):
|
||||
info.result_ref = ref
|
||||
info.result_force = repro_force
|
||||
|
||||
if infofile is not None:
|
||||
info.dump_json(infofile)
|
||||
|
||||
# ideally we would return stages here like a normal repro() call, but
|
||||
# stages is not currently picklable and cannot be returned across
|
||||
# multiprocessing calls
|
||||
@@ -550,6 +579,7 @@ class BaseExecutor(ABC):
|
||||
def _repro_dvc(
|
||||
cls,
|
||||
info: "ExecutorInfo",
|
||||
infofile: str = None,
|
||||
log_errors: bool = True,
|
||||
**kwargs,
|
||||
):
|
||||
@@ -557,6 +587,9 @@ class BaseExecutor(ABC):
|
||||
from dvc.stage.monitor import CheckpointKilledError
|
||||
|
||||
dvc = Repo(os.path.join(info.root_dir, info.dvc_dir))
|
||||
info.status = TaskStatus.RUNNING
|
||||
if infofile is not None:
|
||||
info.dump_json(infofile)
|
||||
if cls.QUIET:
|
||||
dvc.scm_context.quiet = cls.QUIET
|
||||
old_cwd = os.getcwd()
|
||||
@@ -568,15 +601,28 @@ class BaseExecutor(ABC):
|
||||
try:
|
||||
logger.debug("Running repro in '%s'", os.getcwd())
|
||||
yield dvc
|
||||
info.status = TaskStatus.SUCCESS
|
||||
if infofile is not None:
|
||||
info.dump_json(infofile)
|
||||
|
||||
except CheckpointKilledError:
|
||||
info.status = TaskStatus.FAILED
|
||||
if infofile is not None:
|
||||
info.dump_json(infofile)
|
||||
raise
|
||||
except DvcException:
|
||||
if log_errors:
|
||||
logger.exception("")
|
||||
info.status = TaskStatus.FAILED
|
||||
if infofile is not None:
|
||||
info.dump_json(infofile)
|
||||
raise
|
||||
except Exception:
|
||||
if log_errors:
|
||||
logger.exception("unexpected error")
|
||||
info.status = TaskStatus.FAILED
|
||||
if infofile is not None:
|
||||
info.dump_json(infofile)
|
||||
raise
|
||||
finally:
|
||||
dvc.close()
|
||||
@@ -714,3 +760,23 @@ class BaseExecutor(ABC):
|
||||
disable_other_loggers()
|
||||
if level is not None:
|
||||
dvc_logger.setLevel(level)
|
||||
|
||||
@contextmanager
|
||||
def set_exec_refs(
|
||||
self, scm: "Git", stash_rev: str, entry: "ExpStashEntry"
|
||||
):
|
||||
try:
|
||||
# Executor will be initialized with an empty git repo that
|
||||
# we populate by pushing:
|
||||
# EXEC_HEAD - the base commit for this experiment
|
||||
# EXEC_MERGE - the unmerged changes (from our stash)
|
||||
# to be reproduced
|
||||
# EXEC_BASELINE - the baseline commit for this experiment
|
||||
scm.set_ref(EXEC_HEAD, entry.head_rev)
|
||||
scm.set_ref(EXEC_MERGE, stash_rev)
|
||||
scm.set_ref(EXEC_BASELINE, entry.baseline_rev)
|
||||
yield
|
||||
finally:
|
||||
for ref in (EXEC_HEAD, EXEC_MERGE, EXEC_BASELINE):
|
||||
if scm.get_ref(ref):
|
||||
scm.remove_ref(ref)
|
||||
|
||||
@@ -19,7 +19,7 @@ from ..refs import (
|
||||
EXEC_MERGE,
|
||||
EXEC_NAMESPACE,
|
||||
)
|
||||
from .base import EXEC_TMP_DIR, BaseExecutor
|
||||
from .base import EXEC_TMP_DIR, BaseExecutor, TaskStatus
|
||||
|
||||
if TYPE_CHECKING:
|
||||
from scmrepo.git import Git
|
||||
@@ -46,8 +46,8 @@ class BaseLocalExecutor(BaseExecutor):
|
||||
def scm(self):
|
||||
return SCM(self.root_dir)
|
||||
|
||||
def cleanup(self):
|
||||
super().cleanup()
|
||||
def cleanup(self, infofile: str):
|
||||
super().cleanup(infofile)
|
||||
self.scm.close()
|
||||
del self.scm
|
||||
|
||||
@@ -67,15 +67,28 @@ class TempDirExecutor(BaseLocalExecutor):
|
||||
QUIET = True
|
||||
DEFAULT_LOCATION = "tempdir"
|
||||
|
||||
def init_git(self, scm: "Git", branch: Optional[str] = None):
|
||||
def init_git(
|
||||
self,
|
||||
scm: "Git",
|
||||
stash_rev: str,
|
||||
entry: "ExpStashEntry",
|
||||
infofile: Optional[str],
|
||||
branch: Optional[str] = None,
|
||||
):
|
||||
from dulwich.repo import Repo as DulwichRepo
|
||||
|
||||
from ..utils import push_refspec
|
||||
|
||||
DulwichRepo.init(os.fspath(self.root_dir))
|
||||
|
||||
refspec = f"{EXEC_NAMESPACE}/"
|
||||
push_refspec(scm, self.git_url, refspec, refspec)
|
||||
self.status = TaskStatus.PREPARING
|
||||
if infofile:
|
||||
self.info.dump_json(infofile)
|
||||
|
||||
with self.set_exec_refs(scm, stash_rev, entry):
|
||||
refspec = f"{EXEC_NAMESPACE}/"
|
||||
push_refspec(scm, self.git_url, refspec, refspec)
|
||||
|
||||
if branch:
|
||||
push_refspec(scm, self.git_url, branch, branch)
|
||||
self.scm.set_ref(EXEC_BRANCH, branch, symbolic=True)
|
||||
@@ -84,17 +97,12 @@ class TempDirExecutor(BaseLocalExecutor):
|
||||
|
||||
if self.scm.get_ref(EXEC_CHECKPOINT):
|
||||
self.scm.remove_ref(EXEC_CHECKPOINT)
|
||||
|
||||
# checkout EXEC_HEAD and apply EXEC_MERGE on top of it without
|
||||
# committing
|
||||
head = EXEC_BRANCH if branch else EXEC_HEAD
|
||||
self.scm.checkout(head, detach=True)
|
||||
merge_rev = self.scm.get_ref(EXEC_MERGE)
|
||||
|
||||
for ref in (EXEC_HEAD, EXEC_MERGE, EXEC_BASELINE):
|
||||
if scm.get_ref(ref):
|
||||
scm.remove_ref(ref)
|
||||
|
||||
try:
|
||||
self.scm.merge(merge_rev, squash=True, commit=False)
|
||||
except _SCMError as exc:
|
||||
@@ -114,8 +122,8 @@ class TempDirExecutor(BaseLocalExecutor):
|
||||
"""Initialize DVC cache."""
|
||||
self._config(repo.odb.repo.path)
|
||||
|
||||
def cleanup(self):
|
||||
super().cleanup()
|
||||
def cleanup(self, infofile: str):
|
||||
super().cleanup(infofile)
|
||||
logger.debug("Removing tmpdir '%s'", self.root_dir)
|
||||
remove(self.root_dir)
|
||||
|
||||
@@ -123,7 +131,6 @@ class TempDirExecutor(BaseLocalExecutor):
|
||||
def from_stash_entry(
|
||||
cls,
|
||||
repo: "Repo",
|
||||
stash_rev: str,
|
||||
entry: "ExpStashEntry",
|
||||
wdir: Optional[str] = None,
|
||||
**kwargs,
|
||||
@@ -132,9 +139,7 @@ class TempDirExecutor(BaseLocalExecutor):
|
||||
makedirs(parent_dir, exist_ok=True)
|
||||
tmp_dir = mkdtemp(dir=parent_dir)
|
||||
try:
|
||||
executor = cls._from_stash_entry(
|
||||
repo, stash_rev, entry, tmp_dir, **kwargs
|
||||
)
|
||||
executor = cls._from_stash_entry(repo, entry, tmp_dir, **kwargs)
|
||||
logger.debug("Init temp dir executor in '%s'", tmp_dir)
|
||||
return executor
|
||||
except Exception:
|
||||
@@ -152,18 +157,31 @@ class WorkspaceExecutor(BaseLocalExecutor):
|
||||
def from_stash_entry(
|
||||
cls,
|
||||
repo: "Repo",
|
||||
stash_rev: str,
|
||||
entry: "ExpStashEntry",
|
||||
**kwargs,
|
||||
):
|
||||
root_dir = repo.scm.root_dir
|
||||
executor = cls._from_stash_entry(
|
||||
repo, stash_rev, entry, root_dir, **kwargs
|
||||
executor: "WorkspaceExecutor" = cls._from_stash_entry(
|
||||
repo, entry, root_dir, **kwargs
|
||||
)
|
||||
logger.debug("Init workspace executor in '%s'", root_dir)
|
||||
return executor
|
||||
|
||||
def init_git(self, scm: "Git", branch: Optional[str] = None):
|
||||
def init_git(
|
||||
self,
|
||||
scm: "Git",
|
||||
stash_rev: str,
|
||||
entry: "ExpStashEntry",
|
||||
infofile: Optional[str],
|
||||
branch: Optional[str] = None,
|
||||
):
|
||||
self.status = TaskStatus.PREPARING
|
||||
if infofile:
|
||||
self.info.dump_json(infofile)
|
||||
|
||||
scm.set_ref(EXEC_HEAD, entry.head_rev)
|
||||
scm.set_ref(EXEC_MERGE, stash_rev)
|
||||
scm.set_ref(EXEC_BASELINE, entry.baseline_rev)
|
||||
self._detach_stack.enter_context(
|
||||
self.scm.detach_head(
|
||||
self.scm.get_ref(EXEC_HEAD),
|
||||
@@ -184,7 +202,9 @@ class WorkspaceExecutor(BaseLocalExecutor):
|
||||
def init_cache(self, repo: "Repo", rev: str, run_cache: bool = True):
|
||||
pass
|
||||
|
||||
def cleanup(self):
|
||||
def cleanup(self, infofile: str):
|
||||
super().cleanup(infofile)
|
||||
remove(os.path.dirname(infofile))
|
||||
with self._detach_stack:
|
||||
self.scm.remove_ref(EXEC_BASELINE)
|
||||
self.scm.remove_ref(EXEC_MERGE)
|
||||
@@ -193,4 +213,3 @@ class WorkspaceExecutor(BaseLocalExecutor):
|
||||
checkpoint = self.scm.get_ref(EXEC_CHECKPOINT)
|
||||
if checkpoint and checkpoint != self._orig_checkpoint:
|
||||
self.scm.set_ref(EXEC_APPLY, checkpoint)
|
||||
super().cleanup()
|
||||
|
||||
@@ -1,269 +0,0 @@
|
||||
import logging
|
||||
import os
|
||||
from abc import ABC
|
||||
from collections import defaultdict, deque
|
||||
from collections.abc import Mapping
|
||||
from typing import TYPE_CHECKING, Deque, Dict, Generator, Optional, Tuple, Type
|
||||
|
||||
from dvc.proc.manager import ProcessManager
|
||||
|
||||
from ...exceptions import CheckpointExistsError, ExperimentExistsError
|
||||
from ...refs import EXEC_BASELINE, EXEC_HEAD, EXEC_MERGE, ExpRefInfo
|
||||
from ...stash import ExpStashEntry
|
||||
from ..base import EXEC_PID_DIR, BaseExecutor
|
||||
from ..local import TempDirExecutor, WorkspaceExecutor
|
||||
|
||||
if TYPE_CHECKING:
|
||||
from scmrepo.git import Git
|
||||
|
||||
from dvc.repo import Repo
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
class BaseExecutorManager(ABC, Mapping): # noqa: B024
|
||||
"""Manages executors for a collection of experiments to be run."""
|
||||
|
||||
EXECUTOR_CLS: Type = BaseExecutor
|
||||
|
||||
def __init__(
|
||||
self,
|
||||
scm: "Git",
|
||||
wdir: str,
|
||||
**kwargs,
|
||||
):
|
||||
from dvc.utils.fs import makedirs
|
||||
|
||||
self.scm = scm
|
||||
makedirs(wdir, exist_ok=True)
|
||||
self.wdir = wdir
|
||||
self.proc = ProcessManager(self.pid_dir)
|
||||
self._attached: Dict[str, "BaseExecutor"] = {}
|
||||
self._detached: Dict[str, "BaseExecutor"] = dict(self._load_infos())
|
||||
self._queue: Deque[Tuple[str, "BaseExecutor"]] = deque()
|
||||
|
||||
def __getitem__(self, key: str) -> "BaseExecutor":
|
||||
try:
|
||||
return self._attached[key]
|
||||
except KeyError:
|
||||
pass
|
||||
return self._detached[key]
|
||||
|
||||
def __iter__(self):
|
||||
yield from self._attached
|
||||
yield from self._detached
|
||||
|
||||
def __len__(self):
|
||||
return len(self._attached) + len(self._detached)
|
||||
|
||||
@property
|
||||
def pid_dir(self) -> str:
|
||||
return os.path.join(self.wdir, EXEC_PID_DIR)
|
||||
|
||||
def enqueue(self, rev: str, executor: "BaseExecutor"):
|
||||
assert rev not in self
|
||||
self._queue.append((rev, executor))
|
||||
|
||||
def _load_infos(self) -> Generator[Tuple[str, "BaseExecutor"], None, None]:
|
||||
import json
|
||||
from urllib.parse import urlparse
|
||||
|
||||
from ..base import ExecutorInfo
|
||||
from ..ssh import SSHExecutor
|
||||
|
||||
def make_executor(info: "ExecutorInfo"):
|
||||
if info.git_url:
|
||||
scheme = urlparse(info.git_url).scheme
|
||||
if scheme == "file":
|
||||
cls: Type = TempDirExecutor
|
||||
elif scheme == "ssh":
|
||||
cls = SSHExecutor
|
||||
else:
|
||||
raise NotImplementedError
|
||||
else:
|
||||
cls = WorkspaceExecutor
|
||||
return cls.from_info(info)
|
||||
|
||||
for name in self.proc:
|
||||
infofile = self.get_infofile_path(name)
|
||||
try:
|
||||
with open(infofile, encoding="utf-8") as fobj:
|
||||
info = ExecutorInfo.from_dict(json.load(fobj))
|
||||
yield name, make_executor(info)
|
||||
except OSError:
|
||||
continue
|
||||
|
||||
def get_infofile_path(self, name: str) -> str:
|
||||
return os.path.join(
|
||||
self.pid_dir,
|
||||
name,
|
||||
f"{name}{BaseExecutor.INFOFILE_EXT}",
|
||||
)
|
||||
|
||||
@classmethod
|
||||
def from_stash_entries(
|
||||
cls,
|
||||
scm: "Git",
|
||||
wdir: str,
|
||||
repo: "Repo",
|
||||
to_run: Dict[str, ExpStashEntry],
|
||||
**kwargs,
|
||||
):
|
||||
manager = cls(scm, wdir)
|
||||
manager._enqueue_stash_entries(scm, repo, to_run, **kwargs)
|
||||
return manager
|
||||
|
||||
def _enqueue_stash_entries(
|
||||
self,
|
||||
scm: "Git",
|
||||
repo: "Repo",
|
||||
to_run: Dict[str, ExpStashEntry],
|
||||
**kwargs,
|
||||
):
|
||||
try:
|
||||
for stash_rev, entry in to_run.items():
|
||||
scm.set_ref(EXEC_HEAD, entry.head_rev)
|
||||
scm.set_ref(EXEC_MERGE, stash_rev)
|
||||
scm.set_ref(EXEC_BASELINE, entry.baseline_rev)
|
||||
|
||||
# Executor will be initialized with an empty git repo that
|
||||
# we populate by pushing:
|
||||
# EXEC_HEAD - the base commit for this experiment
|
||||
# EXEC_MERGE - the unmerged changes (from our stash)
|
||||
# to be reproduced
|
||||
# EXEC_BASELINE - the baseline commit for this experiment
|
||||
executor = self.EXECUTOR_CLS.from_stash_entry(
|
||||
repo,
|
||||
stash_rev,
|
||||
entry,
|
||||
**kwargs,
|
||||
)
|
||||
self.enqueue(stash_rev, executor)
|
||||
finally:
|
||||
for ref in (EXEC_HEAD, EXEC_MERGE, EXEC_BASELINE):
|
||||
scm.remove_ref(ref)
|
||||
|
||||
def exec_queue(
|
||||
self, repo: "Repo", jobs: Optional[int] = 1, detach: bool = False
|
||||
):
|
||||
"""Run dvc repro for queued executors in parallel."""
|
||||
if detach:
|
||||
raise NotImplementedError
|
||||
# TODO use ProcessManager.spawn() to support detached runs
|
||||
return self._exec_attached(repo, jobs=jobs)
|
||||
|
||||
def _exec_attached(self, repo: "Repo", jobs: Optional[int] = 1):
|
||||
import signal
|
||||
from concurrent.futures import (
|
||||
CancelledError,
|
||||
ProcessPoolExecutor,
|
||||
wait,
|
||||
)
|
||||
from multiprocessing import Manager
|
||||
|
||||
from dvc.stage.monitor import CheckpointKilledError
|
||||
|
||||
result: Dict[str, Dict[str, str]] = defaultdict(dict)
|
||||
|
||||
manager = Manager()
|
||||
pid_q = manager.Queue()
|
||||
|
||||
with ProcessPoolExecutor(max_workers=jobs) as workers:
|
||||
futures = {}
|
||||
while self._queue:
|
||||
rev, executor = self._queue.popleft()
|
||||
infofile = self.get_infofile_path(rev)
|
||||
future = workers.submit(
|
||||
executor.reproduce,
|
||||
info=executor.info,
|
||||
rev=rev,
|
||||
queue=pid_q,
|
||||
infofile=infofile,
|
||||
log_level=logger.getEffectiveLevel(),
|
||||
)
|
||||
futures[future] = (rev, executor)
|
||||
self._attached[rev] = executor
|
||||
|
||||
try:
|
||||
wait(futures)
|
||||
except KeyboardInterrupt:
|
||||
# forward SIGINT to any running executor processes and
|
||||
# cancel any remaining futures
|
||||
workers.shutdown(wait=False)
|
||||
pids = {}
|
||||
for future, (rev, _) in futures.items():
|
||||
if future.running():
|
||||
# if future has already been started by the scheduler
|
||||
# we still have to wait until it tells us its PID
|
||||
while rev not in pids:
|
||||
rev, pid = pid_q.get()
|
||||
pids[rev] = pid
|
||||
os.kill(pids[rev], signal.SIGINT)
|
||||
elif not future.done():
|
||||
future.cancel()
|
||||
|
||||
for future, (rev, executor) in futures.items():
|
||||
rev, executor = futures[future]
|
||||
|
||||
try:
|
||||
exc = future.exception()
|
||||
if exc is None:
|
||||
exec_result = future.result()
|
||||
result[rev].update(
|
||||
self._collect_executor(repo, executor, exec_result)
|
||||
)
|
||||
elif not isinstance(exc, CheckpointKilledError):
|
||||
logger.error(
|
||||
"Failed to reproduce experiment '%s'", rev[:7]
|
||||
)
|
||||
except CancelledError:
|
||||
logger.error(
|
||||
"Cancelled before attempting to reproduce experiment "
|
||||
"'%s'",
|
||||
rev[:7],
|
||||
)
|
||||
finally:
|
||||
self.cleanup_executor(rev, executor)
|
||||
|
||||
return result
|
||||
|
||||
def _collect_executor(self, repo, executor, exec_result) -> Dict[str, str]:
|
||||
# NOTE: GitPython Repo instances cannot be re-used
|
||||
# after process has received SIGINT or SIGTERM, so we
|
||||
# need this hack to re-instantiate git instances after
|
||||
# checkpoint runs. See:
|
||||
# https://github.com/gitpython-developers/GitPython/issues/427
|
||||
# del self.repo.scm
|
||||
|
||||
results = {}
|
||||
|
||||
def on_diverged(ref: str, checkpoint: bool):
|
||||
ref_info = ExpRefInfo.from_ref(ref)
|
||||
if checkpoint:
|
||||
raise CheckpointExistsError(ref_info.name)
|
||||
raise ExperimentExistsError(ref_info.name)
|
||||
|
||||
for ref in executor.fetch_exps(
|
||||
self.scm,
|
||||
force=exec_result.force,
|
||||
on_diverged=on_diverged,
|
||||
):
|
||||
exp_rev = self.scm.get_ref(ref)
|
||||
if exp_rev:
|
||||
logger.debug("Collected experiment '%s'.", exp_rev[:7])
|
||||
results[exp_rev] = exec_result.exp_hash
|
||||
|
||||
if exec_result.ref_info is not None:
|
||||
executor.collect_cache(repo, exec_result.ref_info)
|
||||
|
||||
return results
|
||||
|
||||
def cleanup_executor(self, rev: str, executor: "BaseExecutor"):
|
||||
from dvc.utils.fs import remove
|
||||
|
||||
executor.cleanup()
|
||||
try:
|
||||
self.proc.remove(rev)
|
||||
except KeyError:
|
||||
pass
|
||||
remove(os.path.join(self.pid_dir, rev))
|
||||
@@ -1,107 +0,0 @@
|
||||
import logging
|
||||
from collections import defaultdict
|
||||
from typing import TYPE_CHECKING, Dict, Optional
|
||||
|
||||
from ...refs import EXEC_BASELINE, EXEC_BRANCH, EXEC_HEAD, EXEC_MERGE
|
||||
from ...stash import ExpStashEntry
|
||||
from ..local import TempDirExecutor, WorkspaceExecutor
|
||||
from .base import BaseExecutorManager
|
||||
|
||||
if TYPE_CHECKING:
|
||||
from scmrepo.git import Git
|
||||
|
||||
from dvc.repo import Repo
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
class TempDirExecutorManager(BaseExecutorManager):
|
||||
EXECUTOR_CLS = TempDirExecutor
|
||||
|
||||
|
||||
class WorkspaceExecutorManager(BaseExecutorManager):
|
||||
EXECUTOR_CLS = WorkspaceExecutor
|
||||
|
||||
@classmethod
|
||||
def from_stash_entries(
|
||||
cls,
|
||||
scm: "Git",
|
||||
wdir: str,
|
||||
repo: "Repo",
|
||||
to_run: Dict[str, ExpStashEntry],
|
||||
**kwargs,
|
||||
):
|
||||
manager = cls(scm, wdir)
|
||||
try:
|
||||
assert len(to_run) == 1
|
||||
for stash_rev, entry in to_run.items():
|
||||
scm.set_ref(EXEC_HEAD, entry.head_rev)
|
||||
scm.set_ref(EXEC_MERGE, stash_rev)
|
||||
scm.set_ref(EXEC_BASELINE, entry.baseline_rev)
|
||||
|
||||
executor = cls.EXECUTOR_CLS.from_stash_entry(
|
||||
repo,
|
||||
stash_rev,
|
||||
entry,
|
||||
**kwargs,
|
||||
)
|
||||
manager.enqueue(stash_rev, executor)
|
||||
finally:
|
||||
for ref in (EXEC_MERGE,):
|
||||
scm.remove_ref(ref)
|
||||
return manager
|
||||
|
||||
def _collect_executor(self, repo, executor, exec_result) -> Dict[str, str]:
|
||||
results = {}
|
||||
exp_rev = self.scm.get_ref(EXEC_BRANCH)
|
||||
if exp_rev:
|
||||
logger.debug("Collected experiment '%s'.", exp_rev[:7])
|
||||
results[exp_rev] = exec_result.exp_hash
|
||||
return results
|
||||
|
||||
def exec_queue(
|
||||
self, repo: "Repo", jobs: Optional[int] = 1, detach: bool = False
|
||||
):
|
||||
"""Run a single WorkspaceExecutor.
|
||||
|
||||
Workspace execution is done within the main DVC process
|
||||
(rather than in multiprocessing context)
|
||||
"""
|
||||
from dvc.exceptions import DvcException
|
||||
from dvc.stage.monitor import CheckpointKilledError
|
||||
|
||||
assert len(self._queue) == 1
|
||||
assert not detach
|
||||
result: Dict[str, Dict[str, str]] = defaultdict(dict)
|
||||
rev, executor = self._queue.popleft()
|
||||
|
||||
exec_name = "workspace"
|
||||
infofile = self.get_infofile_path(exec_name)
|
||||
try:
|
||||
exec_result = executor.reproduce(
|
||||
info=executor.info,
|
||||
rev=rev,
|
||||
infofile=infofile,
|
||||
log_level=logger.getEffectiveLevel(),
|
||||
log_errors=not isinstance(executor, WorkspaceExecutor),
|
||||
)
|
||||
if not exec_result.exp_hash:
|
||||
raise DvcException(
|
||||
f"Failed to reproduce experiment '{rev[:7]}'"
|
||||
)
|
||||
if exec_result.ref_info:
|
||||
result[rev].update(
|
||||
self._collect_executor(repo, executor, exec_result)
|
||||
)
|
||||
except CheckpointKilledError:
|
||||
# Checkpoint errors have already been logged
|
||||
return {}
|
||||
except DvcException:
|
||||
raise
|
||||
except Exception as exc:
|
||||
raise DvcException(
|
||||
f"Failed to reproduce experiment '{rev[:7]}'"
|
||||
) from exc
|
||||
finally:
|
||||
self.cleanup_executor(exec_name, executor)
|
||||
return result
|
||||
@@ -1,109 +0,0 @@
|
||||
import logging
|
||||
import posixpath
|
||||
from collections import defaultdict
|
||||
from typing import TYPE_CHECKING, Callable, Dict, Generator, Optional, Tuple
|
||||
|
||||
from ...stash import ExpStashEntry
|
||||
from ..base import BaseExecutor
|
||||
from ..ssh import SSHExecutor, _sshfs
|
||||
from .base import BaseExecutorManager
|
||||
|
||||
if TYPE_CHECKING:
|
||||
from scmrepo.git import Git
|
||||
|
||||
from dvc.repo import Repo
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
class SSHExecutorManager(BaseExecutorManager):
|
||||
EXECUTOR_CLS = SSHExecutor
|
||||
|
||||
def __init__(
|
||||
self,
|
||||
scm: "Git",
|
||||
wdir: str,
|
||||
host: Optional[str] = None,
|
||||
port: Optional[int] = None,
|
||||
username: Optional[str] = None,
|
||||
fs_factory: Optional[Callable] = None,
|
||||
**kwargs,
|
||||
):
|
||||
assert host
|
||||
super().__init__(scm, wdir, **kwargs)
|
||||
self.host = host
|
||||
self.port = port
|
||||
self.username = username
|
||||
self._fs_factory = fs_factory
|
||||
|
||||
def _load_infos(self) -> Generator[Tuple[str, "BaseExecutor"], None, None]:
|
||||
# TODO: load existing infos using sshfs
|
||||
yield from []
|
||||
|
||||
@classmethod
|
||||
def from_stash_entries(
|
||||
cls,
|
||||
scm: "Git",
|
||||
wdir: str,
|
||||
repo: "Repo",
|
||||
to_run: Dict[str, ExpStashEntry],
|
||||
**kwargs,
|
||||
):
|
||||
machine_name: Optional[str] = kwargs.get("machine_name", None)
|
||||
manager = cls(
|
||||
scm, wdir, **repo.machine.get_executor_kwargs(machine_name)
|
||||
)
|
||||
manager._enqueue_stash_entries(scm, repo, to_run, **kwargs)
|
||||
return manager
|
||||
|
||||
def sshfs(self):
|
||||
return _sshfs(self._fs_factory, host=self.host, port=self.port)
|
||||
|
||||
def get_infofile_path(self, name: str) -> str:
|
||||
return f"{name}{BaseExecutor.INFOFILE_EXT}"
|
||||
|
||||
def _exec_attached(self, repo: "Repo", jobs: Optional[int] = 1):
|
||||
from dvc.exceptions import DvcException
|
||||
from dvc.stage.monitor import CheckpointKilledError
|
||||
|
||||
assert len(self._queue) == 1
|
||||
result: Dict[str, Dict[str, str]] = defaultdict(dict)
|
||||
rev, executor = self._queue.popleft()
|
||||
info = executor.info
|
||||
infofile = posixpath.join(
|
||||
info.root_dir,
|
||||
info.dvc_dir,
|
||||
"tmp",
|
||||
self.get_infofile_path(rev),
|
||||
)
|
||||
try:
|
||||
exec_result = executor.reproduce(
|
||||
info=executor.info,
|
||||
rev=rev,
|
||||
infofile=infofile,
|
||||
log_level=logger.getEffectiveLevel(),
|
||||
fs_factory=self._fs_factory,
|
||||
)
|
||||
if not exec_result.exp_hash:
|
||||
raise DvcException(
|
||||
f"Failed to reproduce experiment '{rev[:7]}'"
|
||||
)
|
||||
if exec_result.ref_info:
|
||||
result[rev].update(
|
||||
self._collect_executor(repo, executor, exec_result)
|
||||
)
|
||||
except CheckpointKilledError:
|
||||
# Checkpoint errors have already been logged
|
||||
return {}
|
||||
except DvcException:
|
||||
raise
|
||||
except Exception as exc:
|
||||
raise DvcException(
|
||||
f"Failed to reproduce experiment '{rev[:7]}'"
|
||||
) from exc
|
||||
finally:
|
||||
self.cleanup_executor(rev, executor)
|
||||
return result
|
||||
|
||||
def cleanup_executor(self, rev: str, executor: "BaseExecutor"):
|
||||
executor.cleanup()
|
||||
@@ -15,7 +15,7 @@ from ..refs import (
|
||||
EXEC_MERGE,
|
||||
EXEC_NAMESPACE,
|
||||
)
|
||||
from .base import BaseExecutor, ExecutorInfo, ExecutorResult
|
||||
from .base import BaseExecutor, ExecutorInfo, ExecutorResult, TaskStatus
|
||||
|
||||
if TYPE_CHECKING:
|
||||
from queue import Queue
|
||||
@@ -23,8 +23,8 @@ if TYPE_CHECKING:
|
||||
from scmrepo.git import Git
|
||||
|
||||
from dvc.repo import Repo
|
||||
|
||||
from ..base import ExpRefInfo, ExpStashEntry
|
||||
from dvc.repo.experiments.refs import ExpRefInfo
|
||||
from dvc.repo.experiments.stash import ExpStashEntry
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
@@ -75,14 +75,12 @@ class SSHExecutor(BaseExecutor):
|
||||
def from_stash_entry(
|
||||
cls,
|
||||
repo: "Repo",
|
||||
stash_rev: str,
|
||||
entry: "ExpStashEntry",
|
||||
**kwargs,
|
||||
):
|
||||
machine_name: Optional[str] = kwargs.pop("machine_name", None)
|
||||
executor = cls._from_stash_entry(
|
||||
repo,
|
||||
stash_rev,
|
||||
entry,
|
||||
cls.gen_dirname(entry.name),
|
||||
location=machine_name,
|
||||
@@ -119,9 +117,20 @@ class SSHExecutor(BaseExecutor):
|
||||
}
|
||||
return kwargs
|
||||
|
||||
def init_git(self, scm: "Git", branch: Optional[str] = None):
|
||||
def init_git(
|
||||
self,
|
||||
scm: "Git",
|
||||
stash_rev: str,
|
||||
entry: "ExpStashEntry",
|
||||
infofile: Optional[str],
|
||||
branch: Optional[str] = None,
|
||||
):
|
||||
from ..utils import push_refspec
|
||||
|
||||
self.status = TaskStatus.PREPARING
|
||||
if infofile:
|
||||
self.info.dump_json(infofile)
|
||||
|
||||
with self.sshfs() as fs:
|
||||
fs.makedirs(self.root_dir)
|
||||
self._ssh_cmd(fs, "git init .")
|
||||
@@ -137,8 +146,11 @@ class SSHExecutor(BaseExecutor):
|
||||
# TODO: support multiple client key retries in git backends
|
||||
# (see https://github.com/iterative/dvc/issues/6508)
|
||||
kwargs = self._git_client_args(fs)
|
||||
refspec = f"{EXEC_NAMESPACE}/"
|
||||
push_refspec(scm, self.git_url, refspec, refspec, **kwargs)
|
||||
|
||||
with self.set_exec_refs(scm, stash_rev, entry):
|
||||
refspec = f"{EXEC_NAMESPACE}/"
|
||||
push_refspec(scm, self.git_url, refspec, refspec, **kwargs)
|
||||
|
||||
if branch:
|
||||
push_refspec(scm, self.git_url, branch, branch, **kwargs)
|
||||
self._ssh_cmd(fs, f"git symbolic-ref {EXEC_BRANCH} {branch}")
|
||||
|
||||
@@ -18,11 +18,12 @@ from typing import (
|
||||
Union,
|
||||
)
|
||||
|
||||
from funcy import cached_property
|
||||
from funcy import cached_property, retry
|
||||
|
||||
from dvc.dependency import ParamsDependency
|
||||
from dvc.env import DVCLIVE_RESUME
|
||||
from dvc.exceptions import DvcException
|
||||
from dvc.lock import LockError
|
||||
from dvc.ui import ui
|
||||
|
||||
from ..exceptions import CheckpointExistsError, ExperimentExistsError
|
||||
@@ -33,7 +34,7 @@ from ..executor.base import (
|
||||
ExecutorResult,
|
||||
)
|
||||
from ..executor.local import WorkspaceExecutor
|
||||
from ..refs import EXEC_BASELINE, EXEC_HEAD, EXEC_MERGE, ExpRefInfo
|
||||
from ..refs import ExpRefInfo
|
||||
from ..stash import ExpStash, ExpStashEntry
|
||||
from ..utils import exp_refs_by_rev, scm_locked
|
||||
|
||||
@@ -560,8 +561,9 @@ class BaseStashQueue(ABC):
|
||||
self.scm.add(list(params.keys()))
|
||||
|
||||
@staticmethod
|
||||
@retry(180, errors=LockError, timeout=1)
|
||||
@scm_locked
|
||||
def setup_executor(
|
||||
def init_executor(
|
||||
exp: "Experiments",
|
||||
queue_entry: QueueEntry,
|
||||
executor_cls: Type[BaseExecutor] = WorkspaceExecutor,
|
||||
@@ -576,21 +578,23 @@ class BaseStashQueue(ABC):
|
||||
)
|
||||
if stash_entry.stash_index is not None:
|
||||
stash.drop(stash_entry.stash_index)
|
||||
|
||||
scm.set_ref(EXEC_HEAD, stash_entry.head_rev)
|
||||
scm.set_ref(EXEC_MERGE, stash_rev)
|
||||
scm.set_ref(EXEC_BASELINE, stash_entry.baseline_rev)
|
||||
|
||||
# Executor will be initialized with an empty git repo that
|
||||
# we populate by pushing:
|
||||
# EXEC_HEAD - the base commit for this experiment
|
||||
# EXEC_MERGE - the unmerged changes (from our stash)
|
||||
# to be reproduced
|
||||
# EXEC_BASELINE - the baseline commit for this experiment
|
||||
return executor_cls.from_stash_entry(
|
||||
exp.repo, stash_rev, stash_entry, **kwargs
|
||||
executor = executor_cls.from_stash_entry(
|
||||
exp.repo, stash_entry, **kwargs
|
||||
)
|
||||
|
||||
infofile = exp.celery_queue.get_infofile_path(stash_rev)
|
||||
executor.init_git(
|
||||
exp.repo.scm,
|
||||
stash_rev,
|
||||
stash_entry,
|
||||
infofile,
|
||||
branch=stash_entry.branch,
|
||||
)
|
||||
|
||||
executor.init_cache(exp.repo, stash_rev)
|
||||
|
||||
return executor
|
||||
|
||||
def get_infofile_path(self, name: str) -> str:
|
||||
return os.path.join(
|
||||
self.pid_dir,
|
||||
@@ -599,8 +603,9 @@ class BaseStashQueue(ABC):
|
||||
)
|
||||
|
||||
@staticmethod
|
||||
@retry(180, errors=LockError, timeout=1)
|
||||
@scm_locked
|
||||
def collect_executor(
|
||||
def collect_git(
|
||||
exp: "Experiments",
|
||||
executor: BaseExecutor,
|
||||
exec_result: ExecutorResult,
|
||||
@@ -624,6 +629,17 @@ class BaseStashQueue(ABC):
|
||||
logger.debug("Collected experiment '%s'.", exp_rev[:7])
|
||||
results[exp_rev] = exec_result.exp_hash
|
||||
|
||||
return results
|
||||
|
||||
@classmethod
|
||||
def collect_executor(
|
||||
cls,
|
||||
exp: "Experiments",
|
||||
executor: BaseExecutor,
|
||||
exec_result: ExecutorResult,
|
||||
) -> Dict[str, str]:
|
||||
results = cls.collect_git(exp, executor, exec_result)
|
||||
|
||||
if exec_result.ref_info is not None:
|
||||
executor.collect_cache(exp.repo, exec_result.ref_info)
|
||||
|
||||
@@ -690,3 +706,11 @@ class BaseStashQueue(ABC):
|
||||
entry.stash_rev,
|
||||
message=f"commit: {msg}",
|
||||
)
|
||||
|
||||
@abstractmethod
|
||||
def get_running_exps(self, fetch_refs: bool = True) -> Dict[str, Dict]:
|
||||
"""Get the execution info of the currently running experiments
|
||||
|
||||
Args:
|
||||
fetch_ref (bool): fetch completed checkpoints or not.
|
||||
"""
|
||||
|
||||
@@ -23,9 +23,15 @@ from dvc.exceptions import DvcException
|
||||
from dvc.ui import ui
|
||||
|
||||
from ..exceptions import UnresolvedQueueExpNamesError
|
||||
from ..executor.base import EXEC_TMP_DIR, ExecutorInfo, ExecutorResult
|
||||
from ..executor.base import (
|
||||
EXEC_TMP_DIR,
|
||||
ExecutorInfo,
|
||||
ExecutorResult,
|
||||
TaskStatus,
|
||||
)
|
||||
from .base import BaseStashQueue, QueueDoneResult, QueueEntry, QueueGetResult
|
||||
from .tasks import run_exp
|
||||
from .utils import fetch_running_exp_from_temp_dir
|
||||
|
||||
if TYPE_CHECKING:
|
||||
from dvc_task.app import FSApp
|
||||
@@ -248,7 +254,7 @@ class LocalCeleryQueue(BaseStashQueue):
|
||||
|
||||
def _load_collected(rev: str) -> Optional[ExecutorResult]:
|
||||
executor_info = _load_info(rev)
|
||||
if executor_info.collected:
|
||||
if executor_info.status > TaskStatus.SUCCESS:
|
||||
return executor_info.result
|
||||
raise FileNotFoundError
|
||||
|
||||
@@ -368,3 +374,18 @@ class LocalCeleryQueue(BaseStashQueue):
|
||||
from .remove import celery_remove
|
||||
|
||||
return celery_remove(self, *args, **kwargs)
|
||||
|
||||
def get_running_exps(self, fetch_refs: bool = True) -> Dict[str, Dict]:
|
||||
"""Get the execution info of the currently running experiments
|
||||
|
||||
Args:
|
||||
fetch_ref (bool): fetch completed checkpoints or not.
|
||||
"""
|
||||
result: Dict[str, Dict] = {}
|
||||
for entry in self.iter_active():
|
||||
result.update(
|
||||
fetch_running_exp_from_temp_dir(
|
||||
self, entry.stash_rev, fetch_refs
|
||||
)
|
||||
)
|
||||
return result
|
||||
|
||||
@@ -3,8 +3,6 @@ from typing import Any, Dict
|
||||
from celery import shared_task
|
||||
from celery.utils.log import get_task_logger
|
||||
|
||||
from dvc.utils.fs import remove
|
||||
|
||||
from ..executor.base import ExecutorInfo
|
||||
from ..executor.local import TempDirExecutor
|
||||
from .base import BaseStashQueue, QueueEntry
|
||||
@@ -13,7 +11,7 @@ logger = get_task_logger(__name__)
|
||||
|
||||
|
||||
@shared_task
|
||||
def setup_exp(entry_dict: Dict[str, Any]) -> str:
|
||||
def setup_exp(entry_dict: Dict[str, Any]) -> TempDirExecutor:
|
||||
"""Setup an experiment.
|
||||
|
||||
Arguments:
|
||||
@@ -28,7 +26,7 @@ def setup_exp(entry_dict: Dict[str, Any]) -> str:
|
||||
repo = Repo(entry.dvc_root)
|
||||
# TODO: split executor.init_cache into separate subtask - we can release
|
||||
# exp.scm_lock before DVC push
|
||||
executor = BaseStashQueue.setup_executor(
|
||||
executor = BaseStashQueue.init_executor(
|
||||
repo.experiments,
|
||||
entry,
|
||||
TempDirExecutor,
|
||||
@@ -36,7 +34,7 @@ def setup_exp(entry_dict: Dict[str, Any]) -> str:
|
||||
)
|
||||
infofile = repo.experiments.celery_queue.get_infofile_path(entry.stash_rev)
|
||||
executor.info.dump_json(infofile)
|
||||
return executor.root_dir
|
||||
return executor
|
||||
|
||||
|
||||
@shared_task
|
||||
@@ -79,25 +77,14 @@ def collect_exp(
|
||||
|
||||
|
||||
@shared_task
|
||||
def cleanup_exp( # pylint: disable=unused-argument
|
||||
tmp_dir: str, entry_dict: Dict[str, Any]
|
||||
) -> None:
|
||||
def cleanup_exp(executor: TempDirExecutor, infofile: str) -> None:
|
||||
"""Cleanup after an experiment.
|
||||
|
||||
Arguments:
|
||||
tmp_dir: Temp directory to be removed.
|
||||
entry_dict: Serialized QueueEntry for this experiment.
|
||||
"""
|
||||
remove(tmp_dir)
|
||||
|
||||
|
||||
def _set_collected(infofile: str):
|
||||
try:
|
||||
executor_info = ExecutorInfo.load_json(infofile)
|
||||
executor_info.collected = True
|
||||
executor_info.dump_json(infofile)
|
||||
except FileNotFoundError:
|
||||
pass
|
||||
executor.cleanup(infofile)
|
||||
|
||||
|
||||
@shared_task
|
||||
@@ -115,11 +102,10 @@ def run_exp(entry_dict: Dict[str, Any]) -> None:
|
||||
repo = Repo(entry.dvc_root)
|
||||
queue = repo.experiments.celery_queue
|
||||
infofile = queue.get_infofile_path(entry.stash_rev)
|
||||
root_dir = setup_exp.s(entry_dict)()
|
||||
executor = setup_exp.s(entry_dict)()
|
||||
try:
|
||||
cmd = ["dvc", "exp", "exec-run", "--infofile", infofile]
|
||||
proc_dict = queue.proc.run_signature(cmd, name=entry.stash_rev)()
|
||||
collect_exp.s(proc_dict, entry_dict)()
|
||||
finally:
|
||||
cleanup_exp.s(root_dir, entry_dict)()
|
||||
_set_collected(infofile)
|
||||
cleanup_exp.s(executor, infofile)()
|
||||
|
||||
@@ -11,9 +11,11 @@ from ..executor.base import (
|
||||
BaseExecutor,
|
||||
ExecutorInfo,
|
||||
ExecutorResult,
|
||||
TaskStatus,
|
||||
)
|
||||
from ..executor.local import TempDirExecutor
|
||||
from .base import BaseStashQueue, QueueEntry, QueueGetResult
|
||||
from .utils import fetch_running_exp_from_temp_dir
|
||||
from .workspace import WorkspaceQueue
|
||||
|
||||
if TYPE_CHECKING:
|
||||
@@ -60,7 +62,7 @@ class TempDirQueue(WorkspaceQueue):
|
||||
stash_entry.name,
|
||||
stash_entry.head_rev,
|
||||
)
|
||||
executor = self.setup_executor(
|
||||
executor = self.init_executor(
|
||||
self.repo.experiments,
|
||||
entry,
|
||||
TempDirExecutor,
|
||||
@@ -75,8 +77,9 @@ class TempDirQueue(WorkspaceQueue):
|
||||
for stash_rev in self.proc:
|
||||
infofile = self.get_infofile_path(stash_rev)
|
||||
executor_info = ExecutorInfo.load_json(infofile)
|
||||
if not executor_info.collected and os.path.exists(
|
||||
executor_info.root_dir
|
||||
if (
|
||||
not executor_info.status <= TaskStatus.SUCCESS
|
||||
and os.path.exists(executor_info.root_dir)
|
||||
):
|
||||
yield QueueEntry(
|
||||
self.repo.root_dir,
|
||||
@@ -96,3 +99,13 @@ class TempDirQueue(WorkspaceQueue):
|
||||
exec_result: ExecutorResult,
|
||||
) -> Dict[str, str]:
|
||||
return BaseStashQueue.collect_executor(exp, executor, exec_result)
|
||||
|
||||
def get_running_exps(self, fetch_refs: bool = True) -> Dict[str, Dict]:
|
||||
result: Dict[str, Dict] = {}
|
||||
for entry in self.iter_active():
|
||||
result.update(
|
||||
fetch_running_exp_from_temp_dir(
|
||||
self, entry.stash_rev, fetch_refs
|
||||
)
|
||||
)
|
||||
return result
|
||||
|
||||
@@ -0,0 +1,58 @@
|
||||
import logging
|
||||
from typing import TYPE_CHECKING, Dict
|
||||
|
||||
from ..executor.base import ExecutorInfo, TaskStatus
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
if TYPE_CHECKING:
|
||||
from .base import BaseStashQueue
|
||||
|
||||
|
||||
def fetch_running_exp_from_temp_dir(
|
||||
queue: "BaseStashQueue", rev: str, fetch_refs: bool
|
||||
) -> Dict[str, Dict]:
|
||||
"""Fetch status of running exps out of current working directory
|
||||
|
||||
Args:
|
||||
queue (BaseStashQueue):
|
||||
rev (str): stash revision of the experiment
|
||||
fetch_refs (bool): fetch running checkpoint results to local or not.
|
||||
|
||||
Returns:
|
||||
Dict[str, Dict]: _description_
|
||||
"""
|
||||
from dvc.scm import InvalidRemoteSCMRepo
|
||||
from dvc.utils.serialize import load_json
|
||||
|
||||
from ..executor.local import TempDirExecutor
|
||||
|
||||
result: Dict[str, Dict] = {}
|
||||
infofile = queue.get_infofile_path(rev)
|
||||
try:
|
||||
info = ExecutorInfo.from_dict(load_json(infofile))
|
||||
except OSError:
|
||||
return result
|
||||
if info.status < TaskStatus.FAILED:
|
||||
result[rev] = info.asdict()
|
||||
if info.git_url and fetch_refs and info.status > TaskStatus.PREPARING:
|
||||
|
||||
def on_diverged(_ref: str, _checkpoint: bool):
|
||||
return False
|
||||
|
||||
executor = TempDirExecutor.from_info(info)
|
||||
try:
|
||||
for ref in executor.fetch_exps(
|
||||
queue.scm,
|
||||
on_diverged=on_diverged,
|
||||
):
|
||||
logger.debug("Updated running experiment '%s'.", ref)
|
||||
last_rev = queue.scm.get_ref(ref)
|
||||
result[rev]["last"] = last_rev
|
||||
if last_rev:
|
||||
result[last_rev] = info.asdict()
|
||||
except InvalidRemoteSCMRepo:
|
||||
# ignore stale info files
|
||||
del result[rev]
|
||||
return result
|
||||
@@ -1,15 +1,25 @@
|
||||
import json
|
||||
import logging
|
||||
import os
|
||||
from collections import defaultdict
|
||||
from typing import TYPE_CHECKING, Collection, Dict, Generator, Optional
|
||||
from typing import TYPE_CHECKING, Collection, Dict, Generator, List, Optional
|
||||
|
||||
import psutil
|
||||
from funcy import first
|
||||
from voluptuous import Invalid
|
||||
|
||||
from dvc.exceptions import DvcException
|
||||
from dvc.lock import make_lock
|
||||
from dvc.rwlock import RWLOCK_FILE, RWLOCK_LOCK, SCHEMA
|
||||
from dvc.utils import relpath
|
||||
from dvc.utils.fs import remove
|
||||
|
||||
from ..exceptions import ExpQueueEmptyError
|
||||
from ..executor.base import BaseExecutor, ExecutorResult
|
||||
from ..executor.base import (
|
||||
BaseExecutor,
|
||||
ExecutorInfo,
|
||||
ExecutorResult,
|
||||
TaskStatus,
|
||||
)
|
||||
from ..executor.local import WorkspaceExecutor
|
||||
from ..refs import EXEC_BRANCH
|
||||
from .base import BaseStashQueue, QueueDoneResult, QueueEntry, QueueGetResult
|
||||
@@ -41,7 +51,7 @@ class WorkspaceQueue(BaseStashQueue):
|
||||
stash_entry.name,
|
||||
stash_entry.head_rev,
|
||||
)
|
||||
executor = self.setup_executor(self.repo.experiments, entry)
|
||||
executor = self.init_executor(self.repo.experiments, entry)
|
||||
return QueueGetResult(entry, executor)
|
||||
|
||||
def iter_queued(self) -> Generator[QueueEntry, None, None]:
|
||||
@@ -118,9 +128,7 @@ class WorkspaceQueue(BaseStashQueue):
|
||||
f"Failed to reproduce experiment '{rev[:7]}'"
|
||||
) from exc
|
||||
finally:
|
||||
if self._EXEC_NAME == exec_name:
|
||||
remove(os.path.join(self.pid_dir, exec_name))
|
||||
executor.cleanup()
|
||||
executor.cleanup(infofile)
|
||||
return results
|
||||
|
||||
@staticmethod
|
||||
@@ -135,6 +143,7 @@ class WorkspaceQueue(BaseStashQueue):
|
||||
assert exec_result.exp_hash
|
||||
logger.debug("Collected experiment '%s'.", exp_rev[:7])
|
||||
results[exp_rev] = exec_result.exp_hash
|
||||
|
||||
return results
|
||||
|
||||
def get_result(self, entry: QueueEntry) -> Optional[ExecutorResult]:
|
||||
@@ -153,3 +162,89 @@ class WorkspaceQueue(BaseStashQueue):
|
||||
follow: bool = False,
|
||||
):
|
||||
raise NotImplementedError
|
||||
|
||||
def check_rwlock(
|
||||
self,
|
||||
hardlink: bool = False,
|
||||
autocorrect: bool = False,
|
||||
) -> bool:
|
||||
"""Check and autocorrect the RWLock status for file paths.
|
||||
|
||||
Args:
|
||||
hardlink (bool): use hardlink lock to guard rwlock file when on
|
||||
edit.
|
||||
autocorrect (bool): autocorrect corrupted rwlock file.
|
||||
|
||||
Return:
|
||||
(bool): if the pid alive.
|
||||
"""
|
||||
path = self.repo.fs.path.join(self.repo.tmp_dir, RWLOCK_FILE)
|
||||
|
||||
rwlock_guard = make_lock(
|
||||
self.repo.fs.path.join(self.repo.tmp_dir, RWLOCK_LOCK),
|
||||
tmp_dir=self.repo.tmp_dir,
|
||||
hardlink_lock=hardlink,
|
||||
)
|
||||
with rwlock_guard:
|
||||
try:
|
||||
with self.repo.fs.open(path, encoding="utf-8") as fobj:
|
||||
lock: Dict[str, List[Dict]] = SCHEMA(json.load(fobj))
|
||||
file_path = first(lock["read"])
|
||||
if not file_path:
|
||||
return False
|
||||
lock_info = first(lock["read"][file_path])
|
||||
pid = int(lock_info["pid"])
|
||||
if psutil.pid_exists(pid):
|
||||
return True
|
||||
cmd = lock_info["cmd"]
|
||||
logger.warning(
|
||||
"Process '%s' with (Pid %s), in RWLock-file '%s'"
|
||||
" had been killed.",
|
||||
cmd,
|
||||
pid,
|
||||
relpath(path),
|
||||
)
|
||||
except FileNotFoundError:
|
||||
return False
|
||||
except json.JSONDecodeError:
|
||||
logger.warning(
|
||||
"Unable to read RWLock-file '%s'. JSON structure is"
|
||||
" corrupted",
|
||||
relpath(path),
|
||||
)
|
||||
except Invalid:
|
||||
logger.warning("RWLock-file '%s' format error.", relpath(path))
|
||||
if autocorrect:
|
||||
logger.warning(
|
||||
"Delete corrupted RWLock-file '%s'", relpath(path)
|
||||
)
|
||||
remove(path)
|
||||
return False
|
||||
|
||||
def get_running_exps(self, fetch_refs: bool = True) -> Dict[str, Dict]:
|
||||
from dvc.utils.serialize import load_json
|
||||
|
||||
assert self._EXEC_NAME
|
||||
result: Dict[str, Dict] = {}
|
||||
|
||||
if not self.check_rwlock(autocorrect=True):
|
||||
return result
|
||||
|
||||
infofile = self.get_infofile_path(self._EXEC_NAME)
|
||||
|
||||
try:
|
||||
info = ExecutorInfo.from_dict(load_json(infofile))
|
||||
except OSError:
|
||||
return result
|
||||
|
||||
if info.status < TaskStatus.FAILED:
|
||||
# If we are appending to a checkpoint branch in a workspace
|
||||
# run, show the latest checkpoint as running.
|
||||
if info.status == TaskStatus.SUCCESS:
|
||||
return result
|
||||
last_rev = self.scm.get_ref(EXEC_BRANCH)
|
||||
if last_rev:
|
||||
result[last_rev] = info.asdict()
|
||||
else:
|
||||
result[self._EXEC_NAME] = info.asdict()
|
||||
return result
|
||||
|
||||
+202
-51
@@ -1,6 +1,7 @@
|
||||
import logging
|
||||
from collections import OrderedDict, defaultdict
|
||||
from datetime import datetime
|
||||
from enum import Enum
|
||||
from itertools import chain
|
||||
from typing import TYPE_CHECKING, Any, Callable, Dict, List, Optional, Union
|
||||
|
||||
@@ -17,16 +18,21 @@ if TYPE_CHECKING:
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
class ExpStatus(Enum):
|
||||
Success = 0
|
||||
Queued = 1
|
||||
Running = 2
|
||||
Failed = 3
|
||||
|
||||
|
||||
@error_handler
|
||||
def _collect_experiment_commit(
|
||||
repo,
|
||||
exp_rev,
|
||||
stash=False,
|
||||
sha_only=True,
|
||||
repo: "Repo",
|
||||
exp_rev: str,
|
||||
status: ExpStatus = ExpStatus.Success,
|
||||
param_deps=False,
|
||||
running=None,
|
||||
onerror: Optional[Callable] = None,
|
||||
is_baseline: bool = False,
|
||||
):
|
||||
from dvc.dependency import ParamsDependency, RepoDependency
|
||||
|
||||
@@ -67,37 +73,35 @@ def _collect_experiment_commit(
|
||||
if not (out.is_metric or out.is_plot)
|
||||
}
|
||||
|
||||
res["queued"] = stash
|
||||
if running is not None and exp_rev in running:
|
||||
res["running"] = True
|
||||
res["executor"] = running[exp_rev].get("location")
|
||||
res["status"] = status.name
|
||||
if status == ExpStatus.Running:
|
||||
res["executor"] = running.get(exp_rev, {}).get("location", None)
|
||||
else:
|
||||
res["running"] = False
|
||||
res["executor"] = None
|
||||
if not stash:
|
||||
|
||||
if status == ExpStatus.Failed:
|
||||
res["error"] = {
|
||||
"msg": "Experiment run failed.",
|
||||
"type": "",
|
||||
}
|
||||
|
||||
if status not in {ExpStatus.Queued, ExpStatus.Failed}:
|
||||
vals = _gather_metrics(
|
||||
repo, targets=None, rev=rev, recursive=False, onerror=onerror
|
||||
)
|
||||
res["metrics"] = vals
|
||||
|
||||
if not sha_only and rev != "workspace":
|
||||
name: Optional[str] = None
|
||||
if is_baseline:
|
||||
for refspec in ["refs/tags", "refs/heads"]:
|
||||
name = repo.scm.describe(rev, base=refspec)
|
||||
if name:
|
||||
break
|
||||
if not name:
|
||||
name = repo.experiments.get_exact_name(rev)
|
||||
if name:
|
||||
name = name.rsplit("/")[-1]
|
||||
res["name"] = name
|
||||
|
||||
return res
|
||||
|
||||
|
||||
def _collect_experiment_branch(
|
||||
res, repo, branch, baseline, onerror: Optional[Callable] = None, **kwargs
|
||||
res,
|
||||
repo,
|
||||
branch,
|
||||
baseline,
|
||||
onerror: Optional[Callable] = None,
|
||||
running=None,
|
||||
**kwargs,
|
||||
):
|
||||
from dvc.scm import resolve_rev
|
||||
|
||||
@@ -105,8 +109,14 @@ def _collect_experiment_branch(
|
||||
prev = None
|
||||
revs = list(repo.scm.branch_revs(exp_rev, baseline))
|
||||
for rev in revs:
|
||||
status = ExpStatus.Running if rev in running else ExpStatus.Success
|
||||
collected_exp = _collect_experiment_commit(
|
||||
repo, rev, onerror=onerror, **kwargs
|
||||
repo,
|
||||
rev,
|
||||
onerror=onerror,
|
||||
status=status,
|
||||
running=running,
|
||||
**kwargs,
|
||||
)
|
||||
if len(revs) > 1:
|
||||
exp = {"checkpoint_tip": exp_rev}
|
||||
@@ -129,12 +139,129 @@ def _collect_experiment_branch(
|
||||
return res
|
||||
|
||||
|
||||
def get_names(repo: "Repo", result: Dict[str, Dict[str, Any]]):
|
||||
|
||||
rev_set = set()
|
||||
baseline_set = set()
|
||||
for baseline in result:
|
||||
for rev in result[baseline]:
|
||||
if rev == "baseline":
|
||||
rev = baseline
|
||||
baseline_set.add(rev)
|
||||
if rev != "workspace":
|
||||
rev_set.add(rev)
|
||||
|
||||
names: Dict[str, Optional[str]] = {}
|
||||
for base in ("refs/tags/", "refs/heads/"):
|
||||
if rev_set:
|
||||
names.update(
|
||||
(rev, ref[len(base) :])
|
||||
for rev, ref in repo.scm.describe(
|
||||
baseline_set, base=base
|
||||
).items()
|
||||
if ref is not None
|
||||
)
|
||||
rev_set.difference_update(names.keys())
|
||||
|
||||
exact_name = repo.experiments.get_exact_name(rev_set)
|
||||
|
||||
for baseline, baseline_results in result.items():
|
||||
for rev, rev_result in baseline_results.items():
|
||||
name: Optional[str] = None
|
||||
if rev == "baseline":
|
||||
rev = baseline
|
||||
if rev == "workspace":
|
||||
continue
|
||||
name = names.get(rev, None)
|
||||
name = name or exact_name[rev]
|
||||
if name:
|
||||
rev_result["data"]["name"] = name
|
||||
|
||||
|
||||
# flake8: noqa: C901
|
||||
def _collect_active_experiment(
|
||||
repo: "Repo",
|
||||
found_revs: Dict[str, List[str]],
|
||||
running: Dict[str, Any],
|
||||
**kwargs,
|
||||
) -> Dict[str, Dict[str, Any]]:
|
||||
result: Dict[str, Dict] = defaultdict(OrderedDict)
|
||||
for entry in chain(
|
||||
repo.experiments.tempdir_queue.iter_active(),
|
||||
repo.experiments.celery_queue.iter_active(),
|
||||
):
|
||||
stash_rev = entry.stash_rev
|
||||
if entry.baseline_rev in found_revs and (
|
||||
stash_rev not in running or not running[stash_rev].get("last")
|
||||
):
|
||||
result[entry.baseline_rev][stash_rev] = _collect_experiment_commit(
|
||||
repo,
|
||||
stash_rev,
|
||||
status=ExpStatus.Running,
|
||||
running=running,
|
||||
**kwargs,
|
||||
)
|
||||
return result
|
||||
|
||||
|
||||
def _collect_queued_experiment(
|
||||
repo: "Repo",
|
||||
found_revs: Dict[str, List[str]],
|
||||
running: Dict[str, Any],
|
||||
**kwargs,
|
||||
) -> Dict[str, Dict[str, Any]]:
|
||||
result: Dict[str, Dict] = defaultdict(OrderedDict)
|
||||
for entry in repo.experiments.celery_queue.iter_queued():
|
||||
stash_rev = entry.stash_rev
|
||||
if entry.baseline_rev in found_revs:
|
||||
result[entry.baseline_rev][stash_rev] = _collect_experiment_commit(
|
||||
repo,
|
||||
stash_rev,
|
||||
status=ExpStatus.Queued,
|
||||
running=running,
|
||||
**kwargs,
|
||||
)
|
||||
return result
|
||||
|
||||
|
||||
def _collect_failed_experiment(
|
||||
repo: "Repo",
|
||||
found_revs: Dict[str, List[str]],
|
||||
running: Dict[str, Any],
|
||||
**kwargs,
|
||||
) -> Dict[str, Dict[str, Any]]:
|
||||
result: Dict[str, Dict] = defaultdict(OrderedDict)
|
||||
for queue_done_result in repo.experiments.celery_queue.iter_failed():
|
||||
entry = queue_done_result.entry
|
||||
stash_rev = entry.stash_rev
|
||||
if entry.baseline_rev in found_revs:
|
||||
experiment = _collect_experiment_commit(
|
||||
repo,
|
||||
stash_rev,
|
||||
status=ExpStatus.Failed,
|
||||
running=running,
|
||||
**kwargs,
|
||||
)
|
||||
result[entry.baseline_rev][stash_rev] = experiment
|
||||
return result
|
||||
|
||||
|
||||
def update_new(
|
||||
to_dict: Dict[str, Dict[str, Any]], from_dict: Dict[str, Dict[str, Any]]
|
||||
):
|
||||
for baseline, experiments in from_dict.items():
|
||||
for rev, experiment in experiments.items():
|
||||
to_dict[baseline][rev] = to_dict[baseline].get(rev, experiment)
|
||||
|
||||
|
||||
def show(
|
||||
repo: "Repo",
|
||||
all_branches=False,
|
||||
all_tags=False,
|
||||
revs: Union[List[str], str, None] = None,
|
||||
all_commits=False,
|
||||
hide_queued=False,
|
||||
hide_failed=False,
|
||||
sha_only=False,
|
||||
num=1,
|
||||
param_deps=False,
|
||||
@@ -160,17 +287,52 @@ def show(
|
||||
iter_revs(repo.scm, revs, num, all_branches, all_tags, all_commits)
|
||||
)
|
||||
|
||||
running = repo.experiments.get_running_exps(fetch_refs=fetch_running)
|
||||
running: Dict[str, Dict] = repo.experiments.get_running_exps(
|
||||
fetch_refs=fetch_running
|
||||
)
|
||||
|
||||
queued_experiment = (
|
||||
_collect_queued_experiment(
|
||||
repo,
|
||||
found_revs,
|
||||
running,
|
||||
param_deps=param_deps,
|
||||
onerror=onerror,
|
||||
)
|
||||
if not hide_queued
|
||||
else {}
|
||||
)
|
||||
|
||||
active_experiment = _collect_active_experiment(
|
||||
repo,
|
||||
found_revs,
|
||||
running,
|
||||
param_deps=param_deps,
|
||||
onerror=onerror,
|
||||
)
|
||||
|
||||
failed_experiments = (
|
||||
_collect_failed_experiment(
|
||||
repo,
|
||||
found_revs,
|
||||
running,
|
||||
sha_only=sha_only,
|
||||
param_deps=param_deps,
|
||||
onerror=onerror,
|
||||
)
|
||||
if not hide_failed
|
||||
else {}
|
||||
)
|
||||
|
||||
for rev in found_revs:
|
||||
status = ExpStatus.Running if rev in running else ExpStatus.Success
|
||||
res[rev]["baseline"] = _collect_experiment_commit(
|
||||
repo,
|
||||
rev,
|
||||
sha_only=sha_only,
|
||||
status=status,
|
||||
param_deps=param_deps,
|
||||
running=running,
|
||||
onerror=onerror,
|
||||
is_baseline=True,
|
||||
)
|
||||
|
||||
if rev == "workspace":
|
||||
@@ -191,31 +353,20 @@ def show(
|
||||
repo,
|
||||
exp_ref,
|
||||
rev,
|
||||
sha_only=sha_only,
|
||||
param_deps=param_deps,
|
||||
running=running,
|
||||
onerror=onerror,
|
||||
)
|
||||
|
||||
# collect standalone & celery experiments
|
||||
for entry in chain(
|
||||
repo.experiments.tempdir_queue.iter_active(),
|
||||
repo.experiments.celery_queue.iter_active(),
|
||||
repo.experiments.celery_queue.iter_queued(),
|
||||
):
|
||||
stash_rev = entry.stash_rev
|
||||
if entry.baseline_rev in found_revs:
|
||||
if stash_rev not in running or not running[stash_rev].get(
|
||||
"last"
|
||||
):
|
||||
experiment = _collect_experiment_commit(
|
||||
repo,
|
||||
stash_rev,
|
||||
sha_only=sha_only,
|
||||
stash=stash_rev not in running,
|
||||
param_deps=param_deps,
|
||||
running=running,
|
||||
onerror=onerror,
|
||||
)
|
||||
res[entry.baseline_rev][stash_rev] = experiment
|
||||
if not hide_failed:
|
||||
update_new(res, failed_experiments)
|
||||
|
||||
update_new(res, active_experiment)
|
||||
|
||||
if not hide_queued:
|
||||
update_new(res, queued_experiment)
|
||||
|
||||
if not sha_only:
|
||||
get_names(repo, res)
|
||||
|
||||
return res
|
||||
|
||||
+81
-99
@@ -3,12 +3,15 @@ from contextlib import suppress
|
||||
from typing import TYPE_CHECKING, Optional
|
||||
|
||||
from dvc.config import NoRemoteError
|
||||
from dvc.exceptions import DownloadError, FileTransferError
|
||||
from dvc.exceptions import DownloadError
|
||||
from dvc.fs import Schemes
|
||||
|
||||
from . import locked
|
||||
|
||||
if TYPE_CHECKING:
|
||||
from dvc.repo import Repo
|
||||
from dvc.types import TargetType
|
||||
from dvc_data.hashfile.transfer import TransferResult
|
||||
from dvc_objects.db.base import ObjectDB
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
@@ -25,22 +28,6 @@ def _fetch_worktree(repo, remote):
|
||||
*key,
|
||||
)
|
||||
save(index)
|
||||
|
||||
for stage in repo.index.stages:
|
||||
for out in stage.outs:
|
||||
if not out.use_cache:
|
||||
continue
|
||||
|
||||
if not out.is_in_repo:
|
||||
continue
|
||||
|
||||
workspace, key = out.index_key
|
||||
entry = repo.index.data[workspace][key]
|
||||
out.hash_info = entry.hash_info
|
||||
out.meta = entry.meta
|
||||
|
||||
stage.dvcfile.dump(stage)
|
||||
|
||||
return len(index)
|
||||
|
||||
|
||||
@@ -58,7 +45,7 @@ def fetch(
|
||||
run_cache=False,
|
||||
revs=None,
|
||||
odb: Optional["ObjectDB"] = None,
|
||||
):
|
||||
) -> int:
|
||||
"""Download data items from a cloud and imported repositories
|
||||
|
||||
Returns:
|
||||
@@ -71,6 +58,9 @@ def fetch(
|
||||
config.NoRemoteError: thrown when downloading only local files and no
|
||||
remote is configured
|
||||
"""
|
||||
from dvc.repo.imports import save_imports
|
||||
from dvc_data.hashfile.transfer import TransferResult
|
||||
|
||||
if isinstance(targets, str):
|
||||
targets = [targets]
|
||||
|
||||
@@ -79,110 +69,102 @@ def fetch(
|
||||
if _remote.worktree:
|
||||
return _fetch_worktree(self, _remote)
|
||||
|
||||
used = self.used_objs(
|
||||
targets,
|
||||
all_branches=all_branches,
|
||||
all_tags=all_tags,
|
||||
all_commits=all_commits,
|
||||
with_deps=with_deps,
|
||||
force=True,
|
||||
remote=remote,
|
||||
jobs=jobs,
|
||||
recursive=recursive,
|
||||
revs=revs,
|
||||
)
|
||||
|
||||
downloaded = 0
|
||||
failed = 0
|
||||
failed_count = 0
|
||||
|
||||
try:
|
||||
if run_cache:
|
||||
self.stage_cache.pull(remote)
|
||||
except DownloadError as exc:
|
||||
failed += exc.amount
|
||||
failed_count += exc.amount
|
||||
|
||||
no_remote_msg: Optional[str] = None
|
||||
result = TransferResult(set(), set())
|
||||
try:
|
||||
d, f = _fetch(
|
||||
self,
|
||||
targets,
|
||||
all_branches=all_branches,
|
||||
all_tags=all_tags,
|
||||
all_commits=all_commits,
|
||||
with_deps=with_deps,
|
||||
force=True,
|
||||
remote=remote,
|
||||
jobs=jobs,
|
||||
recursive=recursive,
|
||||
revs=revs,
|
||||
odb=odb,
|
||||
)
|
||||
result.transferred.update(d)
|
||||
result.failed.update(f)
|
||||
except NoRemoteError as exc:
|
||||
no_remote_msg = str(exc)
|
||||
|
||||
for rev in self.brancher(
|
||||
revs=revs,
|
||||
all_branches=all_branches,
|
||||
all_tags=all_tags,
|
||||
all_commits=all_commits,
|
||||
):
|
||||
imported = save_imports(
|
||||
self,
|
||||
targets,
|
||||
unpartial=not rev or rev == "workspace",
|
||||
recursive=recursive,
|
||||
)
|
||||
result.transferred.update(imported)
|
||||
result.failed.difference_update(imported)
|
||||
|
||||
failed_count += len(result.failed)
|
||||
|
||||
if failed_count:
|
||||
if no_remote_msg:
|
||||
logger.error(no_remote_msg)
|
||||
raise DownloadError(failed_count)
|
||||
|
||||
return len(result.transferred)
|
||||
|
||||
|
||||
def _fetch(
|
||||
repo: "Repo",
|
||||
targets: "TargetType",
|
||||
remote: Optional[str] = None,
|
||||
jobs: Optional[int] = None,
|
||||
odb: Optional["ObjectDB"] = None,
|
||||
**kwargs,
|
||||
) -> "TransferResult":
|
||||
from dvc_data.hashfile.transfer import TransferResult
|
||||
|
||||
result = TransferResult(set(), set())
|
||||
used = repo.used_objs(
|
||||
targets,
|
||||
remote=remote,
|
||||
jobs=jobs,
|
||||
**kwargs,
|
||||
)
|
||||
if odb:
|
||||
all_ids = set()
|
||||
for _odb, obj_ids in used.items():
|
||||
all_ids.update(obj_ids)
|
||||
d, f = _fetch(
|
||||
self,
|
||||
d, f = repo.cloud.pull(
|
||||
all_ids,
|
||||
jobs=jobs,
|
||||
remote=remote,
|
||||
odb=odb,
|
||||
)
|
||||
downloaded += d
|
||||
failed += f
|
||||
result.transferred.update(d)
|
||||
result.failed.update(f)
|
||||
else:
|
||||
for src_odb, obj_ids in sorted(
|
||||
used.items(),
|
||||
key=lambda item: item[0] is not None
|
||||
and item[0].fs.protocol == Schemes.MEMORY,
|
||||
):
|
||||
d, f = _fetch(
|
||||
self,
|
||||
d, f = repo.cloud.pull(
|
||||
obj_ids,
|
||||
jobs=jobs,
|
||||
remote=remote,
|
||||
odb=src_odb,
|
||||
)
|
||||
downloaded += d
|
||||
failed += f
|
||||
|
||||
d, f = _fetch_partial_imports(
|
||||
self,
|
||||
targets,
|
||||
all_branches=all_branches,
|
||||
all_tags=all_tags,
|
||||
all_commits=all_commits,
|
||||
recursive=recursive,
|
||||
revs=revs,
|
||||
)
|
||||
downloaded += d
|
||||
failed += f
|
||||
|
||||
if failed:
|
||||
raise DownloadError(failed)
|
||||
|
||||
return downloaded
|
||||
|
||||
|
||||
def _fetch(repo, obj_ids, **kwargs):
|
||||
downloaded = 0
|
||||
failed = 0
|
||||
try:
|
||||
downloaded += repo.cloud.pull(obj_ids, **kwargs)
|
||||
except FileTransferError as exc:
|
||||
failed += exc.amount
|
||||
return downloaded, failed
|
||||
|
||||
|
||||
def _fetch_partial_imports(repo, targets, **kwargs):
|
||||
from dvc.stage.exceptions import DataSourceChanged
|
||||
|
||||
downloaded = 0
|
||||
failed = 0
|
||||
for stage in repo.partial_imports(targets, **kwargs):
|
||||
dep = stage.deps[0]
|
||||
out = stage.outs[0]
|
||||
try:
|
||||
if dep.changed_checksum():
|
||||
raise DataSourceChanged(f"{stage} ({dep})")
|
||||
|
||||
logger.info("Importing '%s' -> '%s'", dep, out)
|
||||
out.transfer(
|
||||
dep.def_path, jobs=kwargs.get("jobs"), odb=repo.odb.local
|
||||
)
|
||||
except DataSourceChanged as exc:
|
||||
logger.warning(f"{exc}")
|
||||
failed += 1
|
||||
continue
|
||||
if not any(
|
||||
kwargs.get(kw, None)
|
||||
for kw in ("all_branches", "all_tags", "all_commits", "revs")
|
||||
):
|
||||
stage.dump()
|
||||
|
||||
downloaded += 1
|
||||
return downloaded, failed
|
||||
result.transferred.update(d)
|
||||
result.failed.update(f)
|
||||
return result
|
||||
|
||||
+10
-12
@@ -1,19 +1,17 @@
|
||||
import os
|
||||
|
||||
from dvc import output
|
||||
from dvc.exceptions import URLMissingError
|
||||
from dvc.fs import download, parse_external_url
|
||||
from dvc.utils import resolve_output
|
||||
|
||||
def get_url(url, out=None, jobs=None):
|
||||
from dvc import dependency, output
|
||||
from dvc.utils import resolve_output
|
||||
|
||||
def get_url(url, out=None, *, config=None, jobs=None):
|
||||
out = resolve_output(url, out)
|
||||
|
||||
if os.path.exists(url):
|
||||
url = os.path.abspath(url)
|
||||
|
||||
out = os.path.abspath(out)
|
||||
|
||||
(dep,) = dependency.loads_from(None, [url])
|
||||
(out,) = output.loads_from(None, [out], use_cache=False)
|
||||
if not dep.exists:
|
||||
raise dep.DoesNotExistError(dep)
|
||||
dep.download(out, jobs=jobs)
|
||||
|
||||
src_fs, src_path = parse_external_url(url, config)
|
||||
if not src_fs.exists(src_path):
|
||||
raise URLMissingError(url)
|
||||
download(src_fs, src_path, out, jobs=jobs)
|
||||
|
||||
+11
-1
@@ -1,4 +1,5 @@
|
||||
import os
|
||||
from typing import TYPE_CHECKING
|
||||
|
||||
from dvc.repo.scm_context import scm_context
|
||||
from dvc.utils import relpath, resolve_output, resolve_paths
|
||||
@@ -7,6 +8,9 @@ from dvc.utils.fs import path_isin
|
||||
from ..exceptions import InvalidArgumentError, OutputDuplicationError
|
||||
from . import locked
|
||||
|
||||
if TYPE_CHECKING:
|
||||
from dvc.dvcfile import DVCFile
|
||||
|
||||
|
||||
@locked
|
||||
@scm_context
|
||||
@@ -27,6 +31,7 @@ def imp_url(
|
||||
meta=None,
|
||||
jobs=None,
|
||||
fs_config=None,
|
||||
version_aware: bool = False,
|
||||
):
|
||||
from dvc.dvcfile import Dvcfile
|
||||
from dvc.stage import Stage, create_stage, restore_fields
|
||||
@@ -54,6 +59,11 @@ def imp_url(
|
||||
):
|
||||
url = relpath(url, wdir)
|
||||
|
||||
if version_aware:
|
||||
if fs_config is None:
|
||||
fs_config = {}
|
||||
fs_config["version_aware"] = True
|
||||
|
||||
stage = create_stage(
|
||||
Stage,
|
||||
self,
|
||||
@@ -68,7 +78,7 @@ def imp_url(
|
||||
|
||||
out_obj = stage.outs[0]
|
||||
out_obj.annot.update(desc=desc, type=type, labels=labels, meta=meta)
|
||||
dvcfile = Dvcfile(self, stage.path)
|
||||
dvcfile: "DVCFile" = Dvcfile(self, stage.path) # type: ignore
|
||||
dvcfile.remove()
|
||||
|
||||
try:
|
||||
|
||||
@@ -0,0 +1,132 @@
|
||||
import logging
|
||||
from tempfile import TemporaryDirectory
|
||||
from typing import TYPE_CHECKING, List, Set, Tuple, Union
|
||||
|
||||
if TYPE_CHECKING:
|
||||
from dvc.dependency.base import Dependency
|
||||
from dvc.repo import Repo
|
||||
from dvc.repo.index import Index, IndexView
|
||||
from dvc.stage import Stage
|
||||
from dvc.types import TargetType
|
||||
from dvc_data.hashfile import HashInfo
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
def unfetched_view(
|
||||
index: "Index", targets: "TargetType", unpartial: bool = False, **kwargs
|
||||
) -> Tuple["IndexView", List["Dependency"]]:
|
||||
"""Return index view of imports which have not been fetched.
|
||||
|
||||
Returns:
|
||||
Tuple in the form (view, changed_deps) where changed_imports is a list
|
||||
of import dependencies that cannot be fetched due to changed data
|
||||
source.
|
||||
"""
|
||||
changed_deps: List["Dependency"] = []
|
||||
|
||||
def need_fetch(stage: "Stage") -> bool:
|
||||
if (
|
||||
not stage.is_import
|
||||
or stage.is_repo_import
|
||||
or (stage.is_partial_import and not unpartial)
|
||||
):
|
||||
return False
|
||||
|
||||
out = stage.outs[0]
|
||||
if not out.changed_cache():
|
||||
return False
|
||||
|
||||
dep = stage.deps[0]
|
||||
if dep.changed_checksum():
|
||||
changed_deps.append(dep)
|
||||
return False
|
||||
|
||||
return True
|
||||
|
||||
unfetched = index.targets_view(targets, filter_fn=need_fetch, **kwargs)
|
||||
return unfetched, changed_deps
|
||||
|
||||
|
||||
def partial_view(
|
||||
index: "Index", targets: "TargetType", **kwargs
|
||||
) -> "IndexView":
|
||||
return index.targets_view(
|
||||
targets,
|
||||
filter_fn=lambda s: s.is_partial_import,
|
||||
**kwargs,
|
||||
)
|
||||
|
||||
|
||||
def unpartial_imports(index: Union["Index", "IndexView"]) -> int:
|
||||
"""Update any outs in the index which are no longer partial imports.
|
||||
|
||||
Returns:
|
||||
Total number of files which were unpartialed.
|
||||
"""
|
||||
updated = 0
|
||||
for out in index.outs:
|
||||
# we need to use view[key] here and since the out fields have not been
|
||||
# updated yet (out.get_entry() would return the partial-import state)
|
||||
workspace, key = out.index_key
|
||||
entry = index.data[workspace][key]
|
||||
if out.stage.is_partial_import:
|
||||
if out.stage.is_repo_import:
|
||||
dep = out.stage.deps[0]
|
||||
out.hash_info = dep.get_obj().hash_info
|
||||
out.meta = dep.get_meta()
|
||||
else:
|
||||
out.hash_info = entry.hash_info
|
||||
out.meta = entry.meta
|
||||
out.stage.dump()
|
||||
updated += out.meta.nfiles if out.meta.nfiles is not None else 1
|
||||
return updated
|
||||
|
||||
|
||||
def save_imports(
|
||||
repo: "Repo", targets: "TargetType", unpartial: bool = False, **kwargs
|
||||
) -> Set["HashInfo"]:
|
||||
"""Save (download) imports from their original source location.
|
||||
|
||||
Imports which are already cached will not be downloaded.
|
||||
|
||||
Returns:
|
||||
Objects which were downloaded from source location.
|
||||
"""
|
||||
from dvc.stage.exceptions import DataSourceChanged
|
||||
from dvc.utils.fs import makedirs
|
||||
from dvc_data.index import checkout, md5, save
|
||||
from dvc_objects.fs.callbacks import Callback
|
||||
|
||||
downloaded: Set["HashInfo"] = set()
|
||||
|
||||
unfetched, changed = unfetched_view(
|
||||
repo.index, targets, unpartial=unpartial, **kwargs
|
||||
)
|
||||
for dep in changed:
|
||||
logger.warning(str(DataSourceChanged(f"{dep.stage} ({dep})")))
|
||||
|
||||
data_view = unfetched.data["repo"]
|
||||
if len(data_view):
|
||||
cache = repo.odb.local
|
||||
if not cache.fs.exists(cache.path):
|
||||
makedirs(cache.path)
|
||||
with TemporaryDirectory(dir=cache.path) as tmpdir:
|
||||
with Callback.as_tqdm_callback(
|
||||
desc="Downloading imports from source",
|
||||
unit="files",
|
||||
) as cb:
|
||||
checkout(data_view, tmpdir, cache.fs, callback=cb)
|
||||
md5(data_view)
|
||||
save(data_view, odb=cache, hardlink=True)
|
||||
|
||||
downloaded.update(
|
||||
entry.hash_info
|
||||
for _, entry in data_view.iteritems()
|
||||
if not entry.meta.isdir and entry.hash_info is not None
|
||||
)
|
||||
|
||||
if unpartial:
|
||||
unpartial_imports(partial_view(repo.index, targets, **kwargs))
|
||||
|
||||
return downloaded
|
||||
+156
-54
@@ -1,13 +1,13 @@
|
||||
from contextlib import suppress
|
||||
from typing import (
|
||||
TYPE_CHECKING,
|
||||
Any,
|
||||
Callable,
|
||||
Dict,
|
||||
Iterable,
|
||||
Iterator,
|
||||
List,
|
||||
Optional,
|
||||
Sequence,
|
||||
Set,
|
||||
)
|
||||
|
||||
@@ -22,11 +22,11 @@ if TYPE_CHECKING:
|
||||
from dvc.dependency import Dependency, ParamsDependency
|
||||
from dvc.fs import FileSystem
|
||||
from dvc.output import Output
|
||||
from dvc.repo.stage import StageLoad
|
||||
from dvc.repo.stage import StageInfo, StageLoad
|
||||
from dvc.stage import Stage
|
||||
from dvc.types import StrPath, TargetType
|
||||
from dvc_data.hashfile.hash_info import HashInfo
|
||||
from dvc_data.index import DataIndex
|
||||
from dvc_data.index import DataIndex, DataIndexKey, DataIndexView
|
||||
from dvc_objects.db import ObjectDB
|
||||
|
||||
|
||||
@@ -64,6 +64,7 @@ class Index:
|
||||
self.stage_collector: "StageLoad" = repo.stage
|
||||
if stages is not None:
|
||||
self.stages: List["Stage"] = stages
|
||||
self._collected_targets: Dict[int, List["StageInfo"]] = {}
|
||||
|
||||
@cached_property
|
||||
def stages(self) -> List["Stage"]: # pylint: disable=method-hidden
|
||||
@@ -113,6 +114,62 @@ class Index:
|
||||
|
||||
return self.filter(is_stage_inside_path)
|
||||
|
||||
@staticmethod
|
||||
def _hash_targets(
|
||||
targets: Iterable[Optional[str]],
|
||||
**kwargs: Any,
|
||||
) -> int:
|
||||
return hash(
|
||||
(
|
||||
frozenset(targets),
|
||||
kwargs.get("with_deps", False),
|
||||
kwargs.get("recursive", False),
|
||||
)
|
||||
)
|
||||
|
||||
def _collect_targets(
|
||||
self, targets: Optional["TargetType"], **kwargs: Any
|
||||
) -> List["StageInfo"]:
|
||||
from itertools import chain
|
||||
|
||||
from dvc.repo.stage import StageInfo
|
||||
from dvc.utils.collections import ensure_list
|
||||
|
||||
targets = ensure_list(targets)
|
||||
if not targets:
|
||||
return [StageInfo(stage) for stage in self.stages]
|
||||
targets_hash = self._hash_targets(targets, **kwargs)
|
||||
if targets_hash not in self._collected_targets:
|
||||
self._collected_targets[targets_hash] = list(
|
||||
chain.from_iterable(
|
||||
self.stage_collector.collect_granular(target, **kwargs)
|
||||
for target in targets
|
||||
)
|
||||
)
|
||||
return self._collected_targets[targets_hash]
|
||||
|
||||
def targets_view(
|
||||
self,
|
||||
targets: "TargetType",
|
||||
filter_fn: Optional[Callable[["Stage"], bool]] = None,
|
||||
**kwargs: Any,
|
||||
) -> "IndexView":
|
||||
"""Return read-only view of index for the specified targets.
|
||||
|
||||
Args:
|
||||
targets: Targets to collect
|
||||
filter_fn: Optional stage filter to be applied after collecting
|
||||
targets.
|
||||
|
||||
Additional kwargs will be passed into the stage collector.
|
||||
"""
|
||||
stage_infos = [
|
||||
stage_info
|
||||
for stage_info in self._collect_targets(targets, **kwargs)
|
||||
if not filter_fn or filter_fn(stage_info.stage)
|
||||
]
|
||||
return IndexView(self, stage_infos)
|
||||
|
||||
@property
|
||||
def outs(self) -> Iterator["Output"]:
|
||||
for stage in self:
|
||||
@@ -171,8 +228,7 @@ class Index:
|
||||
def data(self) -> "Dict[str, DataIndex]":
|
||||
from collections import defaultdict
|
||||
|
||||
from dvc.config import NoRemoteError
|
||||
from dvc_data.index import DataIndex, DataIndexEntry
|
||||
from dvc_data.index import DataIndex
|
||||
|
||||
by_workspace: dict = defaultdict(DataIndex)
|
||||
|
||||
@@ -184,22 +240,18 @@ class Index:
|
||||
continue
|
||||
|
||||
workspace, key = out.index_key
|
||||
|
||||
try:
|
||||
remote = self.repo.cloud.get_remote_odb(out.remote)
|
||||
except NoRemoteError:
|
||||
remote = None
|
||||
|
||||
data_index = by_workspace[workspace]
|
||||
|
||||
data_index[key] = DataIndexEntry(
|
||||
meta=out.meta,
|
||||
obj=out.get_obj() if out.files else out.obj,
|
||||
hash_info=out.hash_info,
|
||||
odb=out.odb,
|
||||
cache=out.odb,
|
||||
remote=remote,
|
||||
)
|
||||
if out.files:
|
||||
out.obj = out.get_obj()
|
||||
|
||||
entry = out.get_entry()
|
||||
entry.key = key
|
||||
if out.stage.is_import and not out.stage.is_repo_import:
|
||||
entry.fs = out.stage.deps[0].fs
|
||||
entry.path = out.stage.deps[0].fs_path
|
||||
entry.meta = out.stage.deps[0].meta
|
||||
data_index.add(entry)
|
||||
|
||||
return dict(by_workspace)
|
||||
|
||||
@@ -213,22 +265,11 @@ class Index:
|
||||
jobs: int = None,
|
||||
) -> "ObjectContainer":
|
||||
from collections import defaultdict
|
||||
from itertools import chain
|
||||
|
||||
from dvc.utils.collections import ensure_list
|
||||
|
||||
used: "ObjectContainer" = defaultdict(set)
|
||||
collect_targets: Sequence[Optional[str]] = (None,)
|
||||
if targets:
|
||||
collect_targets = ensure_list(targets)
|
||||
|
||||
pairs = chain.from_iterable(
|
||||
self.stage_collector.collect_granular(
|
||||
target, recursive=recursive, with_deps=with_deps
|
||||
)
|
||||
for target in collect_targets
|
||||
pairs = self._collect_targets(
|
||||
targets, recursive=recursive, with_deps=with_deps
|
||||
)
|
||||
|
||||
for stage, filter_info in pairs:
|
||||
for odb, objs in stage.get_used_objs(
|
||||
remote=remote,
|
||||
@@ -239,28 +280,6 @@ class Index:
|
||||
used[odb].update(objs)
|
||||
return used
|
||||
|
||||
def partial_imports(
|
||||
self,
|
||||
targets: "TargetType" = None,
|
||||
recursive: bool = False,
|
||||
) -> List["Stage"]:
|
||||
from itertools import chain
|
||||
|
||||
from dvc.utils.collections import ensure_list
|
||||
|
||||
collect_targets: Sequence[Optional[str]] = (None,)
|
||||
if targets:
|
||||
collect_targets = ensure_list(targets)
|
||||
|
||||
pairs = chain.from_iterable(
|
||||
self.stage_collector.collect_granular(
|
||||
target, recursive=recursive, with_deps=True
|
||||
)
|
||||
for target in collect_targets
|
||||
)
|
||||
|
||||
return [stage for stage, _ in pairs if stage.is_partial_import]
|
||||
|
||||
# Following methods help us treat the collection as a set-like structure
|
||||
# and provides faux-immutability.
|
||||
# These methods do not preserve stages order.
|
||||
@@ -326,6 +345,89 @@ class Index:
|
||||
return dict_md5(self.dumpd())
|
||||
|
||||
|
||||
class IndexView:
|
||||
"""Read-only view of Index.data using filtered stages."""
|
||||
|
||||
def __init__( # pylint: disable=redefined-outer-name
|
||||
self, index: Index, stage_infos: Iterable["StageInfo"]
|
||||
):
|
||||
self._index = index
|
||||
self._stage_infos = stage_infos
|
||||
# NOTE: stage_infos might have the same stage multiple times but with
|
||||
# different filter_info
|
||||
self._stages = list({stage for stage, _ in stage_infos})
|
||||
|
||||
def __len__(self) -> int:
|
||||
return len(self._stages)
|
||||
|
||||
def __contains__(self, stage: "Stage") -> bool:
|
||||
# as we are keeping stages inside a list, it might be slower.
|
||||
return stage in self._stages
|
||||
|
||||
def __iter__(self) -> Iterator["Stage"]:
|
||||
yield from self._stages
|
||||
|
||||
def __getitem__(self, item: str) -> "Stage":
|
||||
"""Get a stage by its addressing attribute."""
|
||||
for stage in self:
|
||||
if stage.addressing == item:
|
||||
return stage
|
||||
raise KeyError(f"{item} - available stages are {self.stages}")
|
||||
|
||||
@property
|
||||
def stages(self):
|
||||
return self._stages
|
||||
|
||||
@property
|
||||
def deps(self) -> Iterator["Dependency"]:
|
||||
for stage in self:
|
||||
yield from stage.deps
|
||||
|
||||
@property
|
||||
def outs(self) -> Iterator["Output"]:
|
||||
outs = set()
|
||||
for stage, filter_info in self._stage_infos:
|
||||
for out in stage.filter_outs(filter_info):
|
||||
outs.add(out)
|
||||
yield from outs
|
||||
|
||||
@cached_property
|
||||
def _data_prefixes(self) -> Dict[str, Set["DataIndexKey"]]:
|
||||
from collections import defaultdict
|
||||
|
||||
prefixes: Dict[str, Set["DataIndexKey"]] = defaultdict(set)
|
||||
for stage, filter_info in self._stage_infos:
|
||||
for out in stage.filter_outs(filter_info):
|
||||
workspace, key = out.index_key
|
||||
if filter_info and out.fs.path.isin(filter_info, out.fs_path):
|
||||
key = (
|
||||
*key,
|
||||
out.fs.path.relparts(filter_info, out.fs_path),
|
||||
)
|
||||
prefixes[workspace].add(key)
|
||||
prefixes[workspace].update(
|
||||
key[:i] for i in range(len(key), 0, -1)
|
||||
)
|
||||
return prefixes
|
||||
|
||||
@cached_property
|
||||
def data(self) -> "Dict[str, DataIndexView]":
|
||||
from functools import partial
|
||||
|
||||
from dvc_data.index import view
|
||||
|
||||
def key_filter(workspace: str, key: "DataIndexKey"):
|
||||
try:
|
||||
return key in self._data_prefixes[workspace]
|
||||
except KeyError:
|
||||
return False
|
||||
|
||||
return {
|
||||
workspace: view(index, partial(key_filter, workspace))
|
||||
for workspace, index in self._index.data.items()
|
||||
}
|
||||
|
||||
|
||||
if __name__ == "__main__":
|
||||
import logging
|
||||
|
||||
|
||||
@@ -0,0 +1,29 @@
|
||||
from dvc.exceptions import URLMissingError
|
||||
from dvc.fs import parse_external_url
|
||||
|
||||
|
||||
def ls_url(url, *, config=None, recursive=False):
|
||||
fs, fs_path = parse_external_url(url, config=config)
|
||||
try:
|
||||
info = fs.info(fs_path)
|
||||
except FileNotFoundError as exc:
|
||||
raise URLMissingError(url) from exc
|
||||
if info["type"] != "directory":
|
||||
return [{"path": info["name"], "isdir": False}]
|
||||
|
||||
ret = []
|
||||
for _, dirs, files in fs.walk(fs_path, detail=True):
|
||||
if not recursive:
|
||||
files.update(dirs)
|
||||
|
||||
for info in files.values():
|
||||
ls_info = {
|
||||
"path": fs.path.relpath(info["name"], fs_path),
|
||||
"isdir": info["type"] == "directory",
|
||||
}
|
||||
ret.append(ls_info)
|
||||
|
||||
if not recursive:
|
||||
break
|
||||
|
||||
return ret
|
||||
@@ -100,7 +100,7 @@ class Plots:
|
||||
"filename":
|
||||
{
|
||||
"data_source": callable loading the data,
|
||||
"props": propreties for the file if it is
|
||||
"props": properties for the file if it is
|
||||
plots type output
|
||||
}
|
||||
}
|
||||
@@ -444,6 +444,10 @@ def _collect_pipeline_files(repo, targets: List[str], props, onerror=None):
|
||||
if isinstance(dvcfile, PipelineFile):
|
||||
dvcfile_path = _relpath(repo.dvcfs, dvcfile.path)
|
||||
dvcfile_defs = dvcfile.load().get("plots", {})
|
||||
if isinstance(dvcfile_defs, list):
|
||||
dvcfile_defs = {
|
||||
k: v for elem in dvcfile_defs for k, v in elem.items()
|
||||
}
|
||||
resolved = _resolve_definitions(
|
||||
repo.dvcfs,
|
||||
targets,
|
||||
|
||||
+15
-19
@@ -1,6 +1,6 @@
|
||||
from typing import TYPE_CHECKING, Optional
|
||||
|
||||
from dvc.exceptions import FileTransferError, UploadError
|
||||
from dvc.exceptions import UploadError
|
||||
|
||||
from ..utils import glob_targets
|
||||
from . import locked
|
||||
@@ -10,14 +10,11 @@ if TYPE_CHECKING:
|
||||
|
||||
|
||||
def _push_worktree(repo, remote):
|
||||
from dvc_data.hashfile.tree import tree_from_index
|
||||
from dvc_data.index import build, checkout, collect
|
||||
from dvc_data.index import checkout
|
||||
from dvc_data.index.save import build_tree
|
||||
|
||||
index = repo.index.data["repo"]
|
||||
checkout(index, remote.path, remote.fs, force=True)
|
||||
build(index, remote.path, remote.fs)
|
||||
if any(out.isdir() for out in repo.index.outs):
|
||||
collect(index, remote.path, remote.fs)
|
||||
checkout(index, remote.path, remote.fs)
|
||||
|
||||
for stage in repo.index.stages:
|
||||
for out in stage.outs:
|
||||
@@ -42,8 +39,7 @@ def _push_worktree(repo, remote):
|
||||
repo.fs.path.relparts(fs_path, out.fs_path)
|
||||
)
|
||||
entry.hash_info = hash_info
|
||||
tree_meta, new_tree = tree_from_index(index, key)
|
||||
new_tree.digest()
|
||||
tree_meta, new_tree = build_tree(index, key)
|
||||
out.obj = new_tree
|
||||
out.hash_info = new_tree.hash_info
|
||||
out.meta = tree_meta
|
||||
@@ -106,18 +102,18 @@ def push(
|
||||
if not include_imports and dest_odb and dest_odb.read_only:
|
||||
continue
|
||||
all_ids.update(obj_ids)
|
||||
try:
|
||||
pushed += self.cloud.push(all_ids, jobs, remote=remote, odb=odb)
|
||||
except FileTransferError as exc:
|
||||
raise UploadError(exc.amount)
|
||||
result = self.cloud.push(all_ids, jobs, remote=remote, odb=odb)
|
||||
if result.failed:
|
||||
raise UploadError(len(result.failed))
|
||||
pushed += len(result.transferred)
|
||||
else:
|
||||
for dest_odb, obj_ids in used.items():
|
||||
if dest_odb and dest_odb.read_only:
|
||||
continue
|
||||
try:
|
||||
pushed += self.cloud.push(
|
||||
obj_ids, jobs, remote=remote, odb=odb or dest_odb
|
||||
)
|
||||
except FileTransferError as exc:
|
||||
raise UploadError(exc.amount)
|
||||
result = self.cloud.push(
|
||||
obj_ids, jobs, remote=remote, odb=odb or dest_odb
|
||||
)
|
||||
if result.failed:
|
||||
raise UploadError(len(result.failed))
|
||||
pushed += len(result.transferred)
|
||||
return pushed
|
||||
|
||||
+2
-3
@@ -225,10 +225,9 @@ class StageLoad:
|
||||
path, name = parse_target(target)
|
||||
return self.load_one(path=path, name=name)
|
||||
|
||||
@staticmethod
|
||||
def _get_filepath(path: str = None, name: str = None) -> str:
|
||||
def _get_filepath(self, path: str = None, name: str = None) -> str:
|
||||
if path:
|
||||
return path
|
||||
return self.repo.fs.path.realpath(path)
|
||||
|
||||
path = PIPELINE_FILE
|
||||
logger.debug("Assuming '%s' to be a stage inside '%s'", name, path)
|
||||
|
||||
+3
-1
@@ -14,7 +14,9 @@ def _joint_status(pairs):
|
||||
status_info = {}
|
||||
|
||||
for stage, filter_info in pairs:
|
||||
if stage.frozen and not stage.is_repo_import:
|
||||
if stage.frozen and not (
|
||||
stage.is_repo_import or stage.is_versioned_import
|
||||
):
|
||||
logger.warning(
|
||||
"%s is frozen. Its dependencies are"
|
||||
" not going to be shown in the status output.",
|
||||
|
||||
+9
-2
@@ -1,4 +1,5 @@
|
||||
import json
|
||||
import logging
|
||||
import os
|
||||
from collections import defaultdict
|
||||
from contextlib import contextmanager
|
||||
@@ -10,6 +11,9 @@ from .fs import localfs
|
||||
from .lock import make_lock
|
||||
from .utils import relpath
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
INFO_SCHEMA = {Required("pid"): int, Required("cmd"): str}
|
||||
|
||||
SCHEMA = Schema(
|
||||
@@ -19,6 +23,9 @@ SCHEMA = Schema(
|
||||
}
|
||||
)
|
||||
|
||||
RWLOCK_FILE = "rwlock"
|
||||
RWLOCK_LOCK = "rwlock.lock"
|
||||
|
||||
|
||||
class RWLockFileCorruptedError(DvcException):
|
||||
def __init__(self, path):
|
||||
@@ -35,10 +42,10 @@ class RWLockFileFormatError(DvcException):
|
||||
|
||||
@contextmanager
|
||||
def _edit_rwlock(lock_dir, fs, hardlink):
|
||||
path = fs.path.join(lock_dir, "rwlock")
|
||||
path = fs.path.join(lock_dir, RWLOCK_FILE)
|
||||
|
||||
rwlock_guard = make_lock(
|
||||
fs.path.join(lock_dir, "rwlock.lock"),
|
||||
fs.path.join(lock_dir, RWLOCK_LOCK),
|
||||
tmp_dir=lock_dir,
|
||||
hardlink_lock=hardlink,
|
||||
)
|
||||
|
||||
+2
-2
@@ -118,7 +118,7 @@ PLOT_DEFINITION = {
|
||||
Output.PARAM_PLOT_TITLE: str,
|
||||
Output.PARAM_PLOT_TEMPLATE: str,
|
||||
}
|
||||
PLOTS_SCHEMA = {str: Any(PLOT_DEFINITION, None)}
|
||||
SINGLE_PLOT_SCHEMA = {str: Any(PLOT_DEFINITION, None)}
|
||||
FOREACH_IN = {
|
||||
Required(FOREACH_KWD): Any(dict, list, str),
|
||||
Required(DO_KWD): STAGE_DEFINITION,
|
||||
@@ -127,9 +127,9 @@ SINGLE_PIPELINE_STAGE_SCHEMA = {
|
||||
str: either_or(STAGE_DEFINITION, FOREACH_IN, [FOREACH_KWD, DO_KWD])
|
||||
}
|
||||
MULTI_STAGE_SCHEMA = {
|
||||
PLOTS: Any(SINGLE_PLOT_SCHEMA, [SINGLE_PLOT_SCHEMA]),
|
||||
STAGES: SINGLE_PIPELINE_STAGE_SCHEMA,
|
||||
VARS_KWD: VARS_SCHEMA,
|
||||
PLOTS: PLOTS_SCHEMA,
|
||||
}
|
||||
|
||||
COMPILED_SINGLE_STAGE_SCHEMA = Schema(SINGLE_STAGE_SCHEMA)
|
||||
|
||||
+13
-5
@@ -257,6 +257,10 @@ class Stage(params.StageParams):
|
||||
|
||||
return isinstance(self.deps[0], RepoDependency)
|
||||
|
||||
@property
|
||||
def is_versioned_import(self):
|
||||
return self.is_import and self.deps[0].fs.version_aware
|
||||
|
||||
@property
|
||||
def is_checkpoint(self):
|
||||
"""
|
||||
@@ -568,6 +572,8 @@ class Stage(params.StageParams):
|
||||
if kwargs.get("checkpoint_func", None) or no_download:
|
||||
allow_missing = True
|
||||
self.save(allow_missing=allow_missing)
|
||||
if no_download:
|
||||
self.ignore_outs()
|
||||
if not no_commit:
|
||||
self.commit(allow_missing=allow_missing)
|
||||
|
||||
@@ -618,7 +624,9 @@ class Stage(params.StageParams):
|
||||
@rwlocked(read=["deps", "outs"])
|
||||
def status(self, check_updates=False, filter_info=None):
|
||||
ret = []
|
||||
show_import = self.is_repo_import and check_updates
|
||||
show_import = (
|
||||
self.is_repo_import or self.is_versioned_import
|
||||
) and check_updates
|
||||
|
||||
if not self.frozen or show_import:
|
||||
self._status_deps(ret)
|
||||
@@ -681,7 +689,7 @@ class Stage(params.StageParams):
|
||||
self, *args, **kwargs
|
||||
) -> Dict[Optional["ObjectDB"], Set["HashInfo"]]:
|
||||
"""Return set of object IDs used by this stage."""
|
||||
if self.is_partial_import:
|
||||
if self.is_partial_import and not self.is_repo_import:
|
||||
return {}
|
||||
|
||||
used_objs = defaultdict(set)
|
||||
@@ -706,7 +714,7 @@ class Stage(params.StageParams):
|
||||
"unable to auto-merge DVC files with deleted outputs"
|
||||
)
|
||||
|
||||
def merge(self, ancestor, other):
|
||||
def merge(self, ancestor, other, allowed=None):
|
||||
assert other
|
||||
|
||||
if not other.outs:
|
||||
@@ -726,7 +734,7 @@ class Stage(params.StageParams):
|
||||
self._check_can_merge(self, ancestor_out)
|
||||
self._check_can_merge(other, ancestor_out)
|
||||
|
||||
self.outs[0].merge(ancestor_out, other.outs[0])
|
||||
self.outs[0].merge(ancestor_out, other.outs[0], allowed=allowed)
|
||||
|
||||
def dump(self, **kwargs):
|
||||
self.dvcfile.dump(self, **kwargs)
|
||||
@@ -768,5 +776,5 @@ class PipelineStage(Stage):
|
||||
def _changed_stage_entry(self):
|
||||
return f"'cmd' of {self} has changed."
|
||||
|
||||
def merge(self, ancestor, other):
|
||||
def merge(self, ancestor, other, allowed=None):
|
||||
raise NotImplementedError
|
||||
|
||||
+1
-2
@@ -9,7 +9,6 @@ from funcy import cached_property, first
|
||||
from dvc import fs
|
||||
from dvc.exceptions import DvcException
|
||||
from dvc.utils import dict_sha256, relpath
|
||||
from dvc_data.hashfile.transfer import _log_exceptions
|
||||
|
||||
if TYPE_CHECKING:
|
||||
from dvc_objects.db import ObjectDB
|
||||
@@ -222,7 +221,7 @@ class StageCache:
|
||||
|
||||
from_fs = from_odb.fs
|
||||
to_fs = to_odb.fs
|
||||
func = _log_exceptions(fs.generic.copy)
|
||||
func = fs.generic.log_exceptions(fs.generic.copy)
|
||||
runs = from_fs.path.join(from_odb.path, "runs")
|
||||
|
||||
http_odb = next(
|
||||
|
||||
@@ -56,7 +56,10 @@ def sync_import(
|
||||
stage.outs[0].checkout()
|
||||
else:
|
||||
stage.save_deps()
|
||||
if not no_download:
|
||||
if no_download:
|
||||
if stage.is_repo_import:
|
||||
stage.deps[0].update()
|
||||
else:
|
||||
stage.deps[0].download(
|
||||
stage.outs[0],
|
||||
jobs=jobs,
|
||||
|
||||
@@ -73,6 +73,7 @@ class StageLoader(Mapping):
|
||||
item.hash_info = HashInfo(item.hash_name, hash_value)
|
||||
if item.hash_info and item.hash_info.isdir:
|
||||
item.meta.isdir = True
|
||||
item.files = get_in(checksums, [key, path, item.PARAM_FILES])
|
||||
|
||||
@classmethod
|
||||
def load_stage(cls, dvcfile, name, stage_data, lock_data=None):
|
||||
|
||||
+10
-3
@@ -152,7 +152,7 @@ def to_pipeline_file(stage: "PipelineStage"):
|
||||
}
|
||||
|
||||
|
||||
def to_single_stage_lockfile(stage: "Stage") -> dict:
|
||||
def to_single_stage_lockfile(stage: "Stage", **kwargs) -> dict:
|
||||
assert stage.cmd
|
||||
|
||||
def _dumpd(item):
|
||||
@@ -164,6 +164,13 @@ def to_single_stage_lockfile(stage: "Stage") -> dict:
|
||||
*meta_d.items(),
|
||||
]
|
||||
|
||||
if item.hash_info.isdir and kwargs.get("with_files"):
|
||||
if item.obj:
|
||||
obj = item.obj
|
||||
else:
|
||||
obj = item.get_obj()
|
||||
ret.append((item.PARAM_FILES, obj.as_list(with_meta=True)))
|
||||
|
||||
return OrderedDict(ret)
|
||||
|
||||
res = OrderedDict([("cmd", stage.cmd)])
|
||||
@@ -183,9 +190,9 @@ def to_single_stage_lockfile(stage: "Stage") -> dict:
|
||||
return res
|
||||
|
||||
|
||||
def to_lockfile(stage: "PipelineStage") -> dict:
|
||||
def to_lockfile(stage: "PipelineStage", **kwargs) -> dict:
|
||||
assert stage.name
|
||||
return {stage.name: to_single_stage_lockfile(stage)}
|
||||
return {stage.name: to_single_stage_lockfile(stage, **kwargs)}
|
||||
|
||||
|
||||
def to_single_stage_file(stage: "Stage", **kwargs):
|
||||
|
||||
@@ -38,7 +38,7 @@ class TestAPI:
|
||||
)
|
||||
def test_filesystem(
|
||||
self,
|
||||
M, # from `pytest-test-utils`
|
||||
M,
|
||||
tmp_dir,
|
||||
make_tmp_dir,
|
||||
scm,
|
||||
@@ -47,6 +47,8 @@ class TestAPI:
|
||||
fs_kwargs,
|
||||
clear_cache,
|
||||
):
|
||||
fs_kwargs = fs_kwargs.copy()
|
||||
|
||||
tmp_dir.scm_gen({"scripts": {"script1": "script1"}}, commit="scripts")
|
||||
tmp_dir.dvc_gen({"data": {"foo": "foo", "bar": "bar"}}, commit="data")
|
||||
dvc.push()
|
||||
@@ -2,6 +2,10 @@ import os
|
||||
|
||||
import pytest
|
||||
|
||||
from dvc.exceptions import URLMissingError
|
||||
from dvc.repo import Repo
|
||||
from dvc.repo.ls_url import ls_url, parse_external_url
|
||||
|
||||
|
||||
class TestImport:
|
||||
def test_import(self, tmp_dir, dvc, workspace):
|
||||
@@ -134,3 +138,103 @@ class TestAdd:
|
||||
assert (
|
||||
workspace / "cache" / dir_hash_value[:2] / dir_hash_value[2:]
|
||||
).is_file()
|
||||
|
||||
|
||||
def match_files(fs, entries, expected):
|
||||
entries_content = {
|
||||
(fs.path.normpath(d["path"]), d["isdir"]) for d in entries
|
||||
}
|
||||
expected_content = {
|
||||
(fs.path.normpath(d["path"]), d["isdir"]) for d in expected
|
||||
}
|
||||
assert entries_content == expected_content
|
||||
|
||||
|
||||
class TestLsUrl:
|
||||
@pytest.mark.parametrize("fname", ["foo", "foo.dvc", "dir/foo"])
|
||||
def test_file(self, cloud, fname):
|
||||
cloud.gen({fname: "foo contents"})
|
||||
fs, fs_path = parse_external_url(cloud.url, cloud.config)
|
||||
result = ls_url(str(cloud / fname), config=cloud.config)
|
||||
match_files(
|
||||
fs,
|
||||
result,
|
||||
[{"path": fs.path.join(fs_path, fname), "isdir": False}],
|
||||
)
|
||||
|
||||
def test_dir(self, cloud):
|
||||
cloud.gen(
|
||||
{"dir/foo": "foo contents", "dir/subdir/bar": "bar contents"}
|
||||
)
|
||||
if not (cloud / "dir").is_dir():
|
||||
pytest.skip("Cannot create directories on this cloud")
|
||||
fs, _ = parse_external_url(cloud.url, cloud.config)
|
||||
result = ls_url(str(cloud / "dir"), config=cloud.config)
|
||||
match_files(
|
||||
fs,
|
||||
result,
|
||||
[
|
||||
{"path": "foo", "isdir": False},
|
||||
{"path": "subdir", "isdir": True},
|
||||
],
|
||||
)
|
||||
|
||||
def test_recursive(self, cloud):
|
||||
cloud.gen(
|
||||
{"dir/foo": "foo contents", "dir/subdir/bar": "bar contents"}
|
||||
)
|
||||
if not (cloud / "dir").is_dir():
|
||||
pytest.skip("Cannot create directories on this cloud")
|
||||
fs, _ = parse_external_url(cloud.url, cloud.config)
|
||||
result = ls_url(
|
||||
str(cloud / "dir"), config=cloud.config, recursive=True
|
||||
)
|
||||
match_files(
|
||||
fs,
|
||||
result,
|
||||
[
|
||||
{"path": "foo", "isdir": False},
|
||||
{"path": "subdir/bar", "isdir": False},
|
||||
],
|
||||
)
|
||||
|
||||
def test_nonexistent(self, cloud):
|
||||
with pytest.raises(URLMissingError):
|
||||
ls_url(str(cloud / "dir"), config=cloud.config)
|
||||
|
||||
|
||||
class TestGetUrl:
|
||||
def test_get_file(self, cloud, tmp_dir):
|
||||
cloud.gen({"foo": "foo contents"})
|
||||
|
||||
Repo.get_url(str(cloud / "foo"), "foo_imported", config=cloud.config)
|
||||
|
||||
assert (tmp_dir / "foo_imported").is_file()
|
||||
assert (tmp_dir / "foo_imported").read_text() == "foo contents"
|
||||
|
||||
def test_get_dir(self, cloud, tmp_dir):
|
||||
cloud.gen({"foo": {"foo": "foo contents"}})
|
||||
if not (cloud / "foo").is_dir():
|
||||
pytest.skip("Cannot create directories on this cloud")
|
||||
|
||||
Repo.get_url(str(cloud / "foo"), "foo_imported", config=cloud.config)
|
||||
|
||||
assert (tmp_dir / "foo_imported").is_dir()
|
||||
assert (tmp_dir / "foo_imported" / "foo").is_file()
|
||||
assert (tmp_dir / "foo_imported" / "foo").read_text() == "foo contents"
|
||||
|
||||
@pytest.mark.parametrize("dname", [".", "dir", "dir/subdir"])
|
||||
def test_get_url_to_dir(self, cloud, tmp_dir, dname):
|
||||
cloud.gen({"src": {"foo": "foo contents"}})
|
||||
if not (cloud / "src").is_dir():
|
||||
pytest.skip("Cannot create directories on this cloud")
|
||||
tmp_dir.gen({"dir": {"subdir": {}}})
|
||||
|
||||
Repo.get_url(str(cloud / "src" / "foo"), dname, config=cloud.config)
|
||||
|
||||
assert (tmp_dir / dname).is_dir()
|
||||
assert (tmp_dir / dname / "foo").read_text() == "foo contents"
|
||||
|
||||
def test_get_url_nonexistent(self, cloud):
|
||||
with pytest.raises(URLMissingError):
|
||||
Repo.get_url(str(cloud / "nonexistent"), config=cloud.config)
|
||||
+16
-23
@@ -1,4 +1,3 @@
|
||||
from collections import defaultdict
|
||||
from pathlib import Path
|
||||
from typing import TYPE_CHECKING, List
|
||||
|
||||
@@ -83,27 +82,21 @@ def to_hydra_overrides(path_overrides):
|
||||
return parser.parse_overrides(overrides=path_overrides)
|
||||
|
||||
|
||||
def dict_product(dicts):
|
||||
import itertools
|
||||
|
||||
return [dict(zip(dicts, x)) for x in itertools.product(*dicts.values())]
|
||||
|
||||
|
||||
def get_hydra_sweeps(path_overrides):
|
||||
merged_overrides = []
|
||||
path_sweeps = {}
|
||||
for path, overrides in path_overrides.items():
|
||||
merged_overrides.extend(
|
||||
[f"{path}___{override}" for override in overrides]
|
||||
)
|
||||
|
||||
hydra_overrides = to_hydra_overrides(merged_overrides)
|
||||
for hydra_override in hydra_overrides:
|
||||
if hydra_override.value_type == ValueType.GLOB_CHOICE_SWEEP:
|
||||
raise InvalidArgumentError(
|
||||
f"Glob override '{hydra_override.input_line}' "
|
||||
"is not supported."
|
||||
)
|
||||
|
||||
splits = BasicSweeper.split_arguments(hydra_overrides, None)[0]
|
||||
sweeps = []
|
||||
for split in splits:
|
||||
sweep_overrides = defaultdict(list)
|
||||
for merged_override in split:
|
||||
path, override = merged_override.split("___")
|
||||
sweep_overrides[path].append(override)
|
||||
sweeps.append(dict(sweep_overrides))
|
||||
return sweeps
|
||||
overrides = to_hydra_overrides(overrides)
|
||||
for override in overrides:
|
||||
if override.value_type == ValueType.GLOB_CHOICE_SWEEP:
|
||||
raise InvalidArgumentError(
|
||||
f"Glob override '{override.input_line}' "
|
||||
"is not supported."
|
||||
)
|
||||
path_sweeps[path] = BasicSweeper.split_arguments(overrides, None)[0]
|
||||
return dict_product(path_sweeps)
|
||||
|
||||
@@ -22,6 +22,7 @@ classifiers =
|
||||
Programming Language :: Python :: 3.8
|
||||
Programming Language :: Python :: 3.9
|
||||
Programming Language :: Python :: 3.10
|
||||
Programming Language :: Python :: 3.11
|
||||
|
||||
[options]
|
||||
setup_requires =
|
||||
@@ -62,12 +63,12 @@ install_requires =
|
||||
rich>=10.13.0
|
||||
pyparsing>=2.4.7
|
||||
typing-extensions>=3.7.4
|
||||
scmrepo==0.1.1
|
||||
dvc-render==0.0.11
|
||||
dvc-task==0.1.2
|
||||
scmrepo==0.1.2
|
||||
dvc-render==0.0.12
|
||||
dvc-task==0.1.4
|
||||
dvclive>=0.10.0
|
||||
dvc-data==0.10.0
|
||||
dvc-http==2.19.1
|
||||
dvc-data==0.22.0
|
||||
dvc-http==2.27.2
|
||||
hydra-core>=1.1.0
|
||||
iterative-telemetry==0.0.5
|
||||
|
||||
@@ -94,11 +95,11 @@ hdfs =
|
||||
dvc-hdfs==2.19.0; python_version < '3.11'
|
||||
oss = dvc-oss==2.19.0
|
||||
s3 = dvc-s3==2.20.1
|
||||
ssh = dvc-ssh==2.19.0
|
||||
ssh = dvc-ssh==2.20.0
|
||||
# gssapi should not be included in all_remotes, because it doesn't have wheels
|
||||
# for Linux, so it will fail to compile if user doesn't have all the
|
||||
# requirements, including kerberos itself.
|
||||
ssh_gssapi = dvc-ssh[gssapi]==2.19.0
|
||||
ssh_gssapi = dvc-ssh[gssapi]==2.20.0
|
||||
webdav = dvc-webdav==2.19.0
|
||||
webhdfs = dvc-webhdfs==2.19.0
|
||||
# requests-kerberos requires krb5 & gssapi, which does not provide wheels Linux
|
||||
@@ -108,12 +109,12 @@ testing =
|
||||
pytest-test-utils==0.0.8
|
||||
tests =
|
||||
%(terraform)s
|
||||
dvc-ssh==2.19.0
|
||||
dvc-ssh==2.20.0
|
||||
# Test requirements
|
||||
pytest==7.1.3
|
||||
pytest-cov==3.0.0
|
||||
pytest-cov==4.0.0
|
||||
pytest-xdist==2.5.0
|
||||
pytest-mock==3.8.2
|
||||
pytest-mock==3.10.0
|
||||
pytest-lazy-fixture==0.6.3
|
||||
%(testing)s
|
||||
# https://github.com/docker/docker-py/issues/2902
|
||||
@@ -122,16 +123,14 @@ tests =
|
||||
pytest-timeout==2.1.0
|
||||
filelock==3.8.0
|
||||
# pylint requirements
|
||||
pylint==2.15.2
|
||||
pylint==2.15.4
|
||||
# we use this to suppress pytest-related false positives in our tests.
|
||||
pylint-pytest==1.1.2
|
||||
# see https://github.com/PyCQA/pylint/issues/7488
|
||||
astroid==2.12.9
|
||||
# we use this to suppress some messages in tests, eg: foo/bar naming,
|
||||
# and, protected method calls in our tests
|
||||
pylint-plugin-utils==0.7
|
||||
# type-checking
|
||||
mypy==0.971
|
||||
mypy==0.982
|
||||
types-requests>=2.27.15
|
||||
types-tabulate>=0.8.6
|
||||
types-toml>=0.10.4
|
||||
|
||||
@@ -9,7 +9,9 @@ from dvc.exceptions import (
|
||||
OutputNotFoundError,
|
||||
PathMissingError,
|
||||
)
|
||||
from dvc.testing.test_api import TestAPI # noqa, pylint: disable=unused-import
|
||||
from dvc.testing.api_tests import ( # noqa, pylint: disable=unused-import
|
||||
TestAPI,
|
||||
)
|
||||
from dvc.testing.tmp_dir import make_subrepo
|
||||
from dvc.utils.fs import remove
|
||||
|
||||
|
||||
@@ -1,122 +1,12 @@
|
||||
from textwrap import dedent
|
||||
|
||||
import pytest
|
||||
|
||||
from tests.func.test_repro_multistage import COPY_SCRIPT
|
||||
from tests.unit.repo.experiments.conftest import ( # noqa pylint disable=unused-argument
|
||||
from tests.unit.repo.experiments.conftest import ( # noqa, pylint disable=unused-argument
|
||||
checkpoint_stage,
|
||||
exp_stage,
|
||||
failed_exp_stage,
|
||||
test_queue,
|
||||
)
|
||||
|
||||
DEFAULT_ITERATIONS = 2
|
||||
CHECKPOINT_SCRIPT_FORMAT = dedent(
|
||||
"""\
|
||||
import os
|
||||
import sys
|
||||
import shutil
|
||||
|
||||
from dvc.api import make_checkpoint
|
||||
|
||||
checkpoint_file = {}
|
||||
checkpoint_iterations = int({})
|
||||
if os.path.exists(checkpoint_file):
|
||||
with open(checkpoint_file) as fobj:
|
||||
try:
|
||||
value = int(fobj.read())
|
||||
except ValueError:
|
||||
value = 0
|
||||
else:
|
||||
with open(checkpoint_file, "w"):
|
||||
pass
|
||||
value = 0
|
||||
|
||||
shutil.copyfile({}, {})
|
||||
|
||||
if os.getenv("DVC_CHECKPOINT"):
|
||||
for _ in range(checkpoint_iterations):
|
||||
value += 1
|
||||
with open(checkpoint_file, "w") as fobj:
|
||||
fobj.write(str(value))
|
||||
make_checkpoint()
|
||||
"""
|
||||
)
|
||||
CHECKPOINT_SCRIPT = CHECKPOINT_SCRIPT_FORMAT.format(
|
||||
"sys.argv[1]", "sys.argv[2]", "sys.argv[3]", "sys.argv[4]"
|
||||
)
|
||||
|
||||
|
||||
@pytest.fixture
|
||||
def exp_stage(tmp_dir, scm, dvc):
|
||||
tmp_dir.gen("copy.py", COPY_SCRIPT)
|
||||
tmp_dir.gen("params.yaml", "foo: 1")
|
||||
stage = dvc.run(
|
||||
cmd="python copy.py params.yaml metrics.yaml",
|
||||
metrics_no_cache=["metrics.yaml"],
|
||||
params=["foo"],
|
||||
name="copy-file",
|
||||
deps=["copy.py"],
|
||||
)
|
||||
scm.add(
|
||||
[
|
||||
"dvc.yaml",
|
||||
"dvc.lock",
|
||||
"copy.py",
|
||||
"params.yaml",
|
||||
"metrics.yaml",
|
||||
".gitignore",
|
||||
]
|
||||
)
|
||||
scm.commit("init")
|
||||
return stage
|
||||
|
||||
|
||||
@pytest.fixture
|
||||
def checkpoint_stage(tmp_dir, scm, dvc, mocker):
|
||||
mocker.patch("dvc.stage.run.Monitor.AWAIT", 0.01)
|
||||
|
||||
tmp_dir.gen("checkpoint.py", CHECKPOINT_SCRIPT)
|
||||
tmp_dir.gen("params.yaml", "foo: 1")
|
||||
stage = dvc.run(
|
||||
cmd=(
|
||||
f"python checkpoint.py foo {DEFAULT_ITERATIONS} "
|
||||
"params.yaml metrics.yaml"
|
||||
),
|
||||
metrics_no_cache=["metrics.yaml"],
|
||||
params=["foo"],
|
||||
checkpoints=["foo"],
|
||||
deps=["checkpoint.py"],
|
||||
no_exec=True,
|
||||
name="checkpoint-file",
|
||||
)
|
||||
scm.add(["dvc.yaml", "checkpoint.py", "params.yaml", ".gitignore"])
|
||||
scm.commit("init")
|
||||
stage.iterations = DEFAULT_ITERATIONS
|
||||
return stage
|
||||
|
||||
|
||||
@pytest.fixture
|
||||
def failed_exp_stage(tmp_dir, scm, dvc):
|
||||
tmp_dir.gen("copy.py", COPY_SCRIPT)
|
||||
tmp_dir.gen("params.yaml", "foo: 1")
|
||||
stage = dvc.stage.add(
|
||||
cmd="python -c 'import sys; sys.exit(1)'",
|
||||
metrics_no_cache=["failed-metrics.yaml"],
|
||||
params=["foo"],
|
||||
name="failed-copy-file",
|
||||
deps=["copy.py"],
|
||||
)
|
||||
scm.add(
|
||||
[
|
||||
"dvc.yaml",
|
||||
"dvc.lock",
|
||||
"copy.py",
|
||||
"params.yaml",
|
||||
"failed-metrics.yaml",
|
||||
".gitignore",
|
||||
]
|
||||
)
|
||||
scm.commit("init")
|
||||
return stage
|
||||
|
||||
|
||||
@pytest.fixture
|
||||
def http_auth_patch(mocker):
|
||||
|
||||
@@ -29,7 +29,6 @@ def test_init_from_stash(tmp_dir, scm, dvc, machine_instance, mocker):
|
||||
mock_entry.name = ""
|
||||
SSHExecutor.from_stash_entry(
|
||||
dvc,
|
||||
"abc123",
|
||||
mock_entry,
|
||||
machine_name="foo",
|
||||
)
|
||||
@@ -39,14 +38,14 @@ def test_init_from_stash(tmp_dir, scm, dvc, machine_instance, mocker):
|
||||
|
||||
@pytest.mark.needs_internet
|
||||
@pytest.mark.parametrize("cloud", [pytest.lazy_fixture("git_ssh")])
|
||||
def test_init_git(tmp_dir, scm, cloud):
|
||||
def test_init_git(tmp_dir, scm, cloud, mocker):
|
||||
tmp_dir.scm_gen({"foo": "foo", "dir": {"bar": "bar"}}, commit="init")
|
||||
baseline_rev = scm.get_rev()
|
||||
scm.set_ref(EXEC_HEAD, baseline_rev)
|
||||
tmp_dir.gen("foo", "stashed")
|
||||
scm.gitpython.git.stash()
|
||||
rev = scm.resolve_rev("stash@{0}")
|
||||
scm.set_ref(EXEC_MERGE, rev)
|
||||
|
||||
mock = mocker.Mock(baseline_rev=baseline_rev, head_rev=baseline_rev)
|
||||
|
||||
root_url = cloud / SSHExecutor.gen_dirname()
|
||||
|
||||
@@ -59,7 +58,8 @@ def test_init_git(tmp_dir, scm, cloud):
|
||||
username=TEST_SSH_USER,
|
||||
fs_factory=partial(_ssh_factory, cloud),
|
||||
)
|
||||
executor.init_git(scm)
|
||||
infofile = str((root_url / "foo.run").path)
|
||||
executor.init_git(scm, rev, mock, infofile=infofile)
|
||||
assert root_url.path == executor._repo_abspath
|
||||
|
||||
fs = cloud._ssh
|
||||
@@ -117,7 +117,6 @@ def test_reproduce(tmp_dir, scm, dvc, cloud, exp_stage, mocker):
|
||||
SSHExecutor.reproduce(
|
||||
info,
|
||||
rev,
|
||||
infofile=infofile,
|
||||
fs_factory=partial(_ssh_factory, cloud),
|
||||
)
|
||||
assert mock_execute.called_once()
|
||||
|
||||
@@ -38,7 +38,7 @@ def test_new_simple(tmp_dir, scm, dvc, exp_stage, mocker, name, workspace):
|
||||
assert (tmp_dir / "metrics.yaml").read_text().strip() == "foo: 2"
|
||||
|
||||
exp_name = name if name else ref_info.name
|
||||
assert dvc.experiments.get_exact_name(exp) == exp_name
|
||||
assert dvc.experiments.get_exact_name([exp])[exp] == exp_name
|
||||
assert resolve_rev(scm, exp_name) == exp
|
||||
|
||||
|
||||
@@ -481,7 +481,7 @@ def test_subdir(tmp_dir, scm, dvc, workspace):
|
||||
with fs.open("dir/metrics.yaml", mode="r", encoding="utf-8") as fobj:
|
||||
assert fobj.read().strip() == "foo: 2"
|
||||
|
||||
assert dvc.experiments.get_exact_name(exp) == ref_info.name
|
||||
assert dvc.experiments.get_exact_name([exp])[exp] == ref_info.name
|
||||
assert resolve_rev(scm, ref_info.name) == exp
|
||||
|
||||
|
||||
@@ -525,7 +525,7 @@ def test_subrepo(tmp_dir, scm, workspace):
|
||||
with fs.open("dir/repo/metrics.yaml", mode="r", encoding="utf-8") as fobj:
|
||||
assert fobj.read().strip() == "foo: 2"
|
||||
|
||||
assert subrepo.dvc.experiments.get_exact_name(exp) == ref_info.name
|
||||
assert subrepo.dvc.experiments.get_exact_name([exp])[exp] == ref_info.name
|
||||
assert resolve_rev(scm, ref_info.name) == exp
|
||||
|
||||
|
||||
|
||||
@@ -12,14 +12,25 @@ from dvc.repo.experiments.executor.base import (
|
||||
EXEC_TMP_DIR,
|
||||
BaseExecutor,
|
||||
ExecutorInfo,
|
||||
TaskStatus,
|
||||
)
|
||||
from dvc.repo.experiments.queue.base import QueueEntry
|
||||
from dvc.repo.experiments.refs import CELERY_STASH, ExpRefInfo
|
||||
from dvc.repo.experiments.utils import exp_refs_by_rev
|
||||
from dvc.utils import relpath
|
||||
from dvc.utils.fs import makedirs
|
||||
from dvc.utils.serialize import YAMLFileCorruptedError
|
||||
from tests.func.test_repro_multistage import COPY_SCRIPT
|
||||
|
||||
LOCK_CONTENTS = {
|
||||
"read": {
|
||||
"data/MNIST": [{"pid": 54062, "cmd": "dvc exp run"}],
|
||||
},
|
||||
"write": {
|
||||
"data/MNIST": {"pid": 54062, "cmd": "dvc exp run"},
|
||||
},
|
||||
}
|
||||
|
||||
|
||||
def make_executor_info(**kwargs):
|
||||
# set default values for required info fields
|
||||
@@ -47,6 +58,21 @@ def test_show_no_commits(tmp_dir):
|
||||
assert Repo.init().experiments.show() == {}
|
||||
|
||||
|
||||
@pytest.mark.vscode
|
||||
def test_show_branch_and_tag_name(tmp_dir, scm, dvc, exp_stage):
|
||||
with tmp_dir.branch("new/branch", new=True):
|
||||
tmp_dir.scm_gen("branch", "branch", "commit")
|
||||
branch_rev = scm.get_rev()
|
||||
|
||||
result = dvc.experiments.show(all_branches=True)
|
||||
assert result[branch_rev]["baseline"]["data"]["name"] == "new/branch"
|
||||
|
||||
scm.tag("new/tag")
|
||||
tag_rev = scm.get_rev()
|
||||
result = dvc.experiments.show(all_tags=True)
|
||||
assert result[tag_rev]["baseline"]["data"]["name"] == "new/tag"
|
||||
|
||||
|
||||
@pytest.mark.vscode
|
||||
def test_show_simple(tmp_dir, scm, dvc, exp_stage):
|
||||
assert dvc.experiments.show()["workspace"] == {
|
||||
@@ -62,8 +88,7 @@ def test_show_simple(tmp_dir, scm, dvc, exp_stage):
|
||||
"metrics": {"metrics.yaml": {"data": {"foo": 1}}},
|
||||
"outs": {},
|
||||
"params": {"params.yaml": {"data": {"foo": 1}}},
|
||||
"queued": False,
|
||||
"running": False,
|
||||
"status": "Success",
|
||||
"executor": None,
|
||||
"timestamp": None,
|
||||
}
|
||||
@@ -96,8 +121,7 @@ def test_show_experiment(tmp_dir, scm, dvc, exp_stage, workspace):
|
||||
"metrics": {"metrics.yaml": {"data": {"foo": 1}}},
|
||||
"outs": {},
|
||||
"params": {"params.yaml": {"data": {"foo": 1}}},
|
||||
"queued": False,
|
||||
"running": False,
|
||||
"status": "Success",
|
||||
"executor": None,
|
||||
"timestamp": timestamp,
|
||||
"name": "master",
|
||||
@@ -129,7 +153,7 @@ def test_show_queued(tmp_dir, scm, dvc, exp_stage):
|
||||
assert len(results) == 2
|
||||
exp = results[exp_rev]["data"]
|
||||
assert exp["name"] == "test_name"
|
||||
assert exp["queued"]
|
||||
assert exp["status"] == "Queued"
|
||||
assert exp["params"]["params.yaml"] == {"data": {"foo": 2}}
|
||||
|
||||
# test that only queued experiments for the current baseline are returned
|
||||
@@ -144,10 +168,68 @@ def test_show_queued(tmp_dir, scm, dvc, exp_stage):
|
||||
results = dvc.experiments.show()[new_rev]
|
||||
assert len(results) == 2
|
||||
exp = results[exp_rev]["data"]
|
||||
assert exp["queued"]
|
||||
assert exp["status"] == "Queued"
|
||||
assert exp["params"]["params.yaml"] == {"data": {"foo": 3}}
|
||||
|
||||
|
||||
@pytest.mark.vscode
|
||||
@pytest.mark.xfail(strict=False, reason="pytest-celery flaky")
|
||||
def test_show_failed_experiment(tmp_dir, scm, dvc, failed_exp_stage):
|
||||
baseline_rev = scm.get_rev()
|
||||
timestamp = datetime.fromtimestamp(
|
||||
scm.gitpython.repo.rev_parse(baseline_rev).committed_date
|
||||
)
|
||||
|
||||
dvc.experiments.run(
|
||||
failed_exp_stage.addressing, params=["foo=2"], queue=True
|
||||
)
|
||||
exp_rev = dvc.experiments.scm.resolve_rev(f"{CELERY_STASH}@{{0}}")
|
||||
dvc.experiments.run(run_all=True)
|
||||
experiments = dvc.experiments.show()[baseline_rev]
|
||||
|
||||
expected_baseline = {
|
||||
"data": {
|
||||
"deps": {
|
||||
"copy.py": {
|
||||
"hash": ANY,
|
||||
"size": ANY,
|
||||
"nfiles": None,
|
||||
}
|
||||
},
|
||||
"metrics": {},
|
||||
"outs": {},
|
||||
"params": {"params.yaml": {"data": {"foo": 1}}},
|
||||
"status": "Success",
|
||||
"executor": None,
|
||||
"timestamp": timestamp,
|
||||
"name": "master",
|
||||
}
|
||||
}
|
||||
|
||||
expected_failed = {
|
||||
"data": {
|
||||
"timestamp": ANY,
|
||||
"params": {"params.yaml": {"data": {"foo": 2}}},
|
||||
"deps": {"copy.py": {"hash": None, "size": None, "nfiles": None}},
|
||||
"outs": {},
|
||||
"status": "Failed",
|
||||
"executor": None,
|
||||
"error": {
|
||||
"msg": "Experiment run failed.",
|
||||
"type": "",
|
||||
},
|
||||
}
|
||||
}
|
||||
|
||||
assert len(experiments) == 2
|
||||
for rev, exp in experiments.items():
|
||||
if rev == "baseline":
|
||||
assert exp == expected_baseline
|
||||
else:
|
||||
assert rev == exp_rev
|
||||
assert exp == expected_failed
|
||||
|
||||
|
||||
@pytest.mark.vscode
|
||||
@pytest.mark.parametrize("workspace", [True, False])
|
||||
def test_show_checkpoint(
|
||||
@@ -174,7 +256,7 @@ def test_show_checkpoint(
|
||||
|
||||
for i, rev in enumerate(checkpoints):
|
||||
if i == 0:
|
||||
name = dvc.experiments.get_exact_name(rev)
|
||||
name = dvc.experiments.get_exact_name([rev])[rev]
|
||||
name = f"{rev[:7]} [{name}]"
|
||||
fs = "╓"
|
||||
elif i == len(checkpoints) - 1:
|
||||
@@ -338,9 +420,24 @@ def test_show_sort(tmp_dir, scm, dvc, exp_stage, caplog):
|
||||
|
||||
|
||||
@pytest.mark.vscode
|
||||
def test_show_running_workspace(tmp_dir, scm, dvc, exp_stage, capsys):
|
||||
@pytest.mark.parametrize(
|
||||
"status, pid_exists",
|
||||
[
|
||||
(TaskStatus.RUNNING, True),
|
||||
(TaskStatus.RUNNING, False),
|
||||
(TaskStatus.FAILED, False),
|
||||
],
|
||||
)
|
||||
def test_show_running_workspace(
|
||||
tmp_dir, scm, dvc, exp_stage, capsys, caplog, status, pid_exists, mocker
|
||||
):
|
||||
from dvc.rwlock import RWLOCK_FILE
|
||||
|
||||
pid_dir = os.path.join(dvc.tmp_dir, EXEC_TMP_DIR, EXEC_PID_DIR)
|
||||
info = make_executor_info(location=BaseExecutor.DEFAULT_LOCATION)
|
||||
lock_file = relpath(os.path.join(dvc.tmp_dir, RWLOCK_FILE), str(tmp_dir))
|
||||
info = make_executor_info(
|
||||
location=BaseExecutor.DEFAULT_LOCATION, status=status
|
||||
)
|
||||
pidfile = os.path.join(
|
||||
pid_dir,
|
||||
"workspace",
|
||||
@@ -348,8 +445,11 @@ def test_show_running_workspace(tmp_dir, scm, dvc, exp_stage, capsys):
|
||||
)
|
||||
makedirs(os.path.dirname(pidfile), True)
|
||||
(tmp_dir / pidfile).dump_json(info.asdict())
|
||||
(tmp_dir / lock_file).dump_json(LOCK_CONTENTS)
|
||||
|
||||
assert dvc.experiments.show()["workspace"] == {
|
||||
mocker.patch("psutil.pid_exists", return_value=pid_exists)
|
||||
|
||||
assert dvc.experiments.show().get("workspace") == {
|
||||
"baseline": {
|
||||
"data": {
|
||||
"deps": {
|
||||
@@ -362,19 +462,33 @@ def test_show_running_workspace(tmp_dir, scm, dvc, exp_stage, capsys):
|
||||
"metrics": {"metrics.yaml": {"data": {"foo": 1}}},
|
||||
"params": {"params.yaml": {"data": {"foo": 1}}},
|
||||
"outs": {},
|
||||
"queued": False,
|
||||
"running": True,
|
||||
"executor": info.location,
|
||||
"status": "Running"
|
||||
if status == TaskStatus.RUNNING and pid_exists
|
||||
else "Success",
|
||||
"executor": info.location
|
||||
if status == TaskStatus.RUNNING and pid_exists
|
||||
else None,
|
||||
"timestamp": None,
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
capsys.readouterr()
|
||||
assert main(["exp", "show", "--csv"]) == 0
|
||||
cap = capsys.readouterr()
|
||||
assert "Running" in cap.out
|
||||
assert info.location in cap.out
|
||||
if status == TaskStatus.RUNNING:
|
||||
if pid_exists:
|
||||
assert "Running" in cap.out
|
||||
assert info.location in cap.out
|
||||
else:
|
||||
cmd = LOCK_CONTENTS["read"]["data/MNIST"][0]["cmd"]
|
||||
pid = LOCK_CONTENTS["read"]["data/MNIST"][0]["pid"]
|
||||
assert (
|
||||
f"Process '{cmd}' with (Pid {pid}), in RWLock-file "
|
||||
f"'{lock_file}' had been killed."
|
||||
) in caplog.text
|
||||
assert (
|
||||
f"Delete corrupted RWLock-file '{lock_file}'"
|
||||
) in caplog.text
|
||||
|
||||
|
||||
def test_show_running_tempdir(tmp_dir, scm, dvc, exp_stage, mocker):
|
||||
@@ -409,20 +523,20 @@ def test_show_running_tempdir(tmp_dir, scm, dvc, exp_stage, mocker):
|
||||
makedirs(os.path.dirname(pidfile), True)
|
||||
(tmp_dir / pidfile).dump_json(info.asdict())
|
||||
mock_fetch = mocker.patch.object(
|
||||
dvc.experiments,
|
||||
"_fetch_running_exp",
|
||||
dvc.experiments.tempdir_queue,
|
||||
"get_running_exps",
|
||||
return_value={exp_rev: info.asdict()},
|
||||
)
|
||||
|
||||
results = dvc.experiments.show()
|
||||
mock_fetch.assert_has_calls(
|
||||
[mocker.call(stash_rev, pidfile, True)],
|
||||
[mocker.call(True)],
|
||||
)
|
||||
exp_data = get_in(results, [baseline_rev, exp_rev, "data"])
|
||||
assert exp_data["running"]
|
||||
assert exp_data["status"] == "Running"
|
||||
assert exp_data["executor"] == info.location
|
||||
|
||||
assert not results["workspace"]["baseline"]["data"]["running"]
|
||||
assert results["workspace"]["baseline"]["data"]["status"] == "Success"
|
||||
|
||||
|
||||
def test_show_running_celery(tmp_dir, scm, dvc, exp_stage, mocker):
|
||||
@@ -444,11 +558,10 @@ def test_show_running_celery(tmp_dir, scm, dvc, exp_stage, mocker):
|
||||
|
||||
results = dvc.experiments.show()
|
||||
exp_data = get_in(results, [baseline_rev, exp_rev, "data"])
|
||||
assert not exp_data["queued"]
|
||||
assert exp_data["running"]
|
||||
assert exp_data["status"] == "Running"
|
||||
assert exp_data["executor"] == info.location
|
||||
|
||||
assert not results["workspace"]["baseline"]["data"]["running"]
|
||||
assert results["workspace"]["baseline"]["data"]["status"] == "Success"
|
||||
|
||||
|
||||
def test_show_running_checkpoint(tmp_dir, scm, dvc, checkpoint_stage, mocker):
|
||||
@@ -470,11 +583,17 @@ def test_show_running_checkpoint(tmp_dir, scm, dvc, checkpoint_stage, mocker):
|
||||
"iter_active",
|
||||
return_value=entries,
|
||||
)
|
||||
mocker.patch.object(
|
||||
dvc.experiments.celery_queue,
|
||||
"iter_failed",
|
||||
return_value=[],
|
||||
)
|
||||
pidfile = queue.get_infofile_path(entries[0].stash_rev)
|
||||
info = make_executor_info(
|
||||
git_url="foo.git",
|
||||
baseline_rev=baseline_rev,
|
||||
location=TempDirExecutor.DEFAULT_LOCATION,
|
||||
status=TaskStatus.RUNNING,
|
||||
)
|
||||
makedirs(os.path.dirname(pidfile), True)
|
||||
(tmp_dir / pidfile).dump_json(info.asdict())
|
||||
@@ -486,10 +605,10 @@ def test_show_running_checkpoint(tmp_dir, scm, dvc, checkpoint_stage, mocker):
|
||||
results = dvc.experiments.show()
|
||||
|
||||
checkpoint_res = get_in(results, [baseline_rev, checkpoint_rev, "data"])
|
||||
assert checkpoint_res["running"]
|
||||
assert checkpoint_res["status"] == "Running"
|
||||
assert checkpoint_res["executor"] == info.location
|
||||
|
||||
assert not results["workspace"]["baseline"]["data"]["running"]
|
||||
assert results["workspace"]["baseline"]["data"]["status"] == "Success"
|
||||
|
||||
|
||||
def test_show_with_broken_repo(tmp_dir, scm, dvc, exp_stage, caplog):
|
||||
|
||||
@@ -34,7 +34,7 @@ from dvc.stage.exceptions import (
|
||||
StageExternalOutputsError,
|
||||
StagePathNotFoundError,
|
||||
)
|
||||
from dvc.testing.test_workspace import TestAdd
|
||||
from dvc.testing.workspace_tests import TestAdd
|
||||
from dvc.utils import LARGE_DIR_SIZE, relpath
|
||||
from dvc.utils.fs import path_isin
|
||||
from dvc.utils.serialize import YAMLFileCorruptedError, load_yaml
|
||||
|
||||
@@ -9,7 +9,7 @@ import dvc_data
|
||||
from dvc.cli import main
|
||||
from dvc.external_repo import clean_repos
|
||||
from dvc.stage.exceptions import StageNotFound
|
||||
from dvc.testing.test_remote import ( # noqa, pylint: disable=unused-import
|
||||
from dvc.testing.remote_tests import ( # noqa, pylint: disable=unused-import
|
||||
TestRemote,
|
||||
)
|
||||
from dvc.utils.fs import remove
|
||||
|
||||
+42
-13
@@ -15,6 +15,16 @@ from dvc.stage.exceptions import StageFileDoesNotExistError
|
||||
from dvc.stage.loader import StageNotFound
|
||||
from dvc.utils.strictyaml import YAMLValidationError
|
||||
|
||||
STAGE_EXAMPLE = {
|
||||
"stage1": {
|
||||
"cmd": "cp foo bar",
|
||||
"desc": "stage desc",
|
||||
"meta": {"key1": "value1", "key2": "value2"},
|
||||
"deps": ["foo"],
|
||||
"outs": [{"bar": {"desc": "bar desc", "meta": {"key": "value"}}}],
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
def test_run_load_one_for_multistage(tmp_dir, dvc):
|
||||
tmp_dir.gen("foo", "foo")
|
||||
@@ -386,19 +396,7 @@ def test_dvcfile_try_dumping_parametrized_stage(tmp_dir, dvc, data, name):
|
||||
|
||||
|
||||
def test_dvcfile_load_dump_stage_with_desc_meta(tmp_dir, dvc):
|
||||
data = {
|
||||
"stages": {
|
||||
"stage1": {
|
||||
"cmd": "cp foo bar",
|
||||
"desc": "stage desc",
|
||||
"meta": {"key1": "value1", "key2": "value2"},
|
||||
"deps": ["foo"],
|
||||
"outs": [
|
||||
{"bar": {"desc": "bar desc", "meta": {"key": "value"}}}
|
||||
],
|
||||
}
|
||||
}
|
||||
}
|
||||
data = {"stages": STAGE_EXAMPLE}
|
||||
(tmp_dir / "dvc.yaml").dump(data)
|
||||
|
||||
stage = dvc.stage.load_one(name="stage1")
|
||||
@@ -411,3 +409,34 @@ def test_dvcfile_load_dump_stage_with_desc_meta(tmp_dir, dvc):
|
||||
# sanity check
|
||||
stage.dump()
|
||||
assert (tmp_dir / "dvc.yaml").parse() == data
|
||||
|
||||
|
||||
@pytest.mark.parametrize(
|
||||
"data",
|
||||
(
|
||||
{
|
||||
"plots": {
|
||||
"path/to/plot": {"x": "value", "y": "value"},
|
||||
"path/to/another/plot": {"x": "value", "y": "value"},
|
||||
},
|
||||
"stages": STAGE_EXAMPLE,
|
||||
},
|
||||
{
|
||||
"plots": [
|
||||
{"path/to/plot": {"x": "value", "y": "value"}},
|
||||
{"path/to/another/plot": {"x": "value", "y": "value"}},
|
||||
],
|
||||
"stages": STAGE_EXAMPLE,
|
||||
},
|
||||
),
|
||||
)
|
||||
def test_dvcfile_load_with_plots(tmp_dir, dvc, data):
|
||||
(tmp_dir / "dvc.yaml").dump(data)
|
||||
plots = list(dvc.plots.collect())
|
||||
top_level_plots = plots[0]["workspace"]["definitions"]["data"]["dvc.yaml"][
|
||||
"data"
|
||||
]
|
||||
assert all(
|
||||
name in top_level_plots
|
||||
for name in ("path/to/plot", "path/to/another/plot")
|
||||
)
|
||||
|
||||
@@ -1,7 +1,6 @@
|
||||
import os
|
||||
from operator import itemgetter
|
||||
|
||||
from dvc.fs.callbacks import Callback
|
||||
from dvc.repo import Repo
|
||||
|
||||
|
||||
@@ -42,57 +41,3 @@ def test_walk_dont_ignore_subrepos(tmp_dir, scm, dvc):
|
||||
|
||||
assert set(get_dirs(next(dvc_fs.walk(path)))) == {".dvc", "subdir", ".git"}
|
||||
assert set(get_dirs(next(scm_fs.walk("/")))) == {".dvc", "subdir"}
|
||||
|
||||
|
||||
def test_callback_on_dvcfs(tmp_dir, dvc, scm, mocker):
|
||||
tmp_dir.dvc_gen({"dir": {"bar": "bar"}}, commit="dvc")
|
||||
tmp_dir.scm_gen({"dir": {"foo": "foo"}}, commit="git")
|
||||
|
||||
fs = dvc.dvcfs
|
||||
|
||||
callback = Callback()
|
||||
fs.get(
|
||||
"dir",
|
||||
(tmp_dir / "dir2").fs_path,
|
||||
callback=callback,
|
||||
)
|
||||
|
||||
assert (tmp_dir / "dir2").read_text() == {"foo": "foo", "bar": "bar"}
|
||||
assert callback.size == 2
|
||||
assert callback.value == 2
|
||||
|
||||
callback = Callback()
|
||||
branch = mocker.spy(callback, "branch")
|
||||
fs.get(
|
||||
os.path.join("dir", "foo"),
|
||||
(tmp_dir / "foo").fs_path,
|
||||
callback=callback,
|
||||
)
|
||||
|
||||
size = os.path.getsize(tmp_dir / "dir" / "foo")
|
||||
assert (tmp_dir / "foo").read_text() == "foo"
|
||||
assert callback.size == 1
|
||||
assert callback.value == 1
|
||||
|
||||
assert branch.call_count == 1
|
||||
assert branch.spy_return.size == size
|
||||
assert branch.spy_return.value == size
|
||||
|
||||
branch.reset_mock()
|
||||
|
||||
callback = Callback()
|
||||
branch = mocker.spy(callback, "branch")
|
||||
fs.get(
|
||||
os.path.join("dir", "bar"),
|
||||
(tmp_dir / "bar").fs_path,
|
||||
callback=callback,
|
||||
)
|
||||
|
||||
size = os.path.getsize(tmp_dir / "dir" / "bar")
|
||||
assert (tmp_dir / "bar").read_text() == "bar"
|
||||
assert callback.size == 1
|
||||
assert callback.value == 1
|
||||
|
||||
assert branch.call_count == 1
|
||||
assert branch.spy_return.size == size
|
||||
assert branch.spy_return.value == size
|
||||
|
||||
@@ -2,8 +2,9 @@ import os
|
||||
|
||||
import pytest
|
||||
|
||||
from dvc.dependency.base import DependencyDoesNotExistError
|
||||
from dvc.exceptions import URLMissingError
|
||||
from dvc.repo import Repo
|
||||
from dvc.testing.workspace_tests import TestGetUrl as _TestGetUrl
|
||||
|
||||
|
||||
def test_get_file(tmp_dir):
|
||||
@@ -26,7 +27,7 @@ def test_get_dir(tmp_dir):
|
||||
|
||||
|
||||
@pytest.mark.parametrize("dname", [".", "dir", "dir/subdir"])
|
||||
def test_get_url_to_dir(tmp_dir, tmp_path_factory, dname):
|
||||
def test_get_url_to_dir(tmp_dir, dname):
|
||||
tmp_dir.gen({"src": {"foo": "foo contents"}, "dir": {"subdir": {}}})
|
||||
|
||||
Repo.get_url(os.path.join("src", "foo"), dname)
|
||||
@@ -36,5 +37,9 @@ def test_get_url_to_dir(tmp_dir, tmp_path_factory, dname):
|
||||
|
||||
|
||||
def test_get_url_nonexistent(tmp_dir):
|
||||
with pytest.raises(DependencyDoesNotExistError):
|
||||
with pytest.raises(URLMissingError):
|
||||
Repo.get_url("nonexistent")
|
||||
|
||||
|
||||
class TestGetUrl(_TestGetUrl):
|
||||
pass
|
||||
|
||||
+65
-14
@@ -18,10 +18,6 @@ def _to_pattern_info_list(str_list: List):
|
||||
return [PatternInfo(a, "") for a in str_list]
|
||||
|
||||
|
||||
def walk_files(dvc, *args):
|
||||
yield from dvc.dvcignore.find(*args)
|
||||
|
||||
|
||||
@pytest.mark.parametrize("filename", ["ignored", "тест"])
|
||||
def test_ignore(tmp_dir, dvc, filename):
|
||||
tmp_dir.gen({"dir": {filename: filename, "other": "text2"}})
|
||||
@@ -29,13 +25,68 @@ def test_ignore(tmp_dir, dvc, filename):
|
||||
|
||||
dvc._reset()
|
||||
|
||||
result = walk_files(dvc, dvc.fs, tmp_dir)
|
||||
result = dvc.dvcignore.find(dvc.fs, tmp_dir)
|
||||
assert set(result) == {
|
||||
(tmp_dir / DvcIgnore.DVCIGNORE_FILE).fs_path,
|
||||
(tmp_dir / "dir" / "other").fs_path,
|
||||
}
|
||||
|
||||
|
||||
def test_walk(tmp_dir, dvc):
|
||||
tmp_dir.gen(
|
||||
{
|
||||
"foo": "foo",
|
||||
"bar": "bar",
|
||||
"dir": {
|
||||
"foo": "foo",
|
||||
"bar": "bar",
|
||||
"baz": "baz",
|
||||
"subdir": {"foo": "foo", "qux": "qux"},
|
||||
},
|
||||
}
|
||||
)
|
||||
tmp_dir.gen(DvcIgnore.DVCIGNORE_FILE, "dir/bar\nfoo")
|
||||
|
||||
dvc._reset()
|
||||
|
||||
result = list(dvc.dvcignore.walk(dvc.fs, tmp_dir))
|
||||
assert result[0][0] == str(tmp_dir)
|
||||
assert result[0][1] == ["dir"]
|
||||
assert set(result[0][2]) == {"bar", ".dvcignore"}
|
||||
assert result[1][0] == str(tmp_dir / "dir")
|
||||
assert result[1][1] == ["subdir"]
|
||||
assert result[1][2] == ["baz"]
|
||||
assert result[2][0] == str(tmp_dir / "dir" / "subdir")
|
||||
assert result[2][1] == []
|
||||
assert result[2][2] == ["qux"]
|
||||
|
||||
result = list(dvc.dvcignore.walk(dvc.fs, tmp_dir, detail=True))
|
||||
assert result == [
|
||||
(
|
||||
str(tmp_dir),
|
||||
{"dir": dvc.fs.info(tmp_dir / "dir")},
|
||||
{
|
||||
"bar": dvc.fs.info(tmp_dir / "bar"),
|
||||
".dvcignore": dvc.fs.info(tmp_dir / ".dvcignore"),
|
||||
},
|
||||
),
|
||||
(
|
||||
str(tmp_dir / "dir"),
|
||||
{
|
||||
"subdir": dvc.fs.info(tmp_dir / "dir" / "subdir"),
|
||||
},
|
||||
{
|
||||
"baz": dvc.fs.info(tmp_dir / "dir" / "baz"),
|
||||
},
|
||||
),
|
||||
(
|
||||
str(tmp_dir / "dir" / "subdir"),
|
||||
{},
|
||||
{"qux": dvc.fs.info(tmp_dir / "dir" / "subdir" / "qux")},
|
||||
),
|
||||
]
|
||||
|
||||
|
||||
def test_rename_ignored_file(tmp_dir, dvc):
|
||||
tmp_dir.gen({"dir": {"ignored": "...", "other": "text"}})
|
||||
|
||||
@@ -133,7 +184,7 @@ def test_ignore_on_branch(tmp_dir, scm, dvc):
|
||||
|
||||
dvc._reset()
|
||||
|
||||
result = walk_files(dvc, dvc.fs, tmp_dir)
|
||||
result = dvc.dvcignore.find(dvc.fs, tmp_dir)
|
||||
assert set(result) == {
|
||||
(tmp_dir / "foo").fs_path,
|
||||
(tmp_dir / "bar").fs_path,
|
||||
@@ -155,7 +206,7 @@ def test_match_nested(tmp_dir, dvc):
|
||||
}
|
||||
)
|
||||
dvc._reset()
|
||||
result = walk_files(dvc, dvc.fs, tmp_dir)
|
||||
result = dvc.dvcignore.find(dvc.fs, tmp_dir)
|
||||
assert set(result) == {
|
||||
(tmp_dir / DvcIgnore.DVCIGNORE_FILE).fs_path,
|
||||
(tmp_dir / "foo").fs_path,
|
||||
@@ -167,7 +218,7 @@ def test_ignore_external(tmp_dir, scm, dvc, tmp_path_factory):
|
||||
ext_dir = TmpDir(os.fspath(tmp_path_factory.mktemp("external_dir")))
|
||||
ext_dir.gen({"y.backup": "y", "tmp": {"file": "ext tmp"}})
|
||||
|
||||
result = walk_files(dvc, dvc.fs, ext_dir)
|
||||
result = dvc.dvcignore.find(dvc.fs, ext_dir)
|
||||
assert set(result) == {
|
||||
(ext_dir / "y.backup").fs_path,
|
||||
(ext_dir / "tmp" / "file").fs_path,
|
||||
@@ -207,7 +258,7 @@ def test_ignore_blank_line(tmp_dir, dvc):
|
||||
tmp_dir.gen({"dir": {"ignored": "text", "other": "text2"}})
|
||||
tmp_dir.gen(DvcIgnore.DVCIGNORE_FILE, "foo\n\ndir/ignored")
|
||||
dvc._reset()
|
||||
result = walk_files(dvc, dvc.fs, tmp_dir / "dir")
|
||||
result = dvc.dvcignore.find(dvc.fs, tmp_dir / "dir")
|
||||
assert set(result) == {(tmp_dir / "dir" / "other").fs_path}
|
||||
|
||||
|
||||
@@ -242,7 +293,7 @@ def test_ignore_file_in_parent_path(
|
||||
tmp_dir.gen(data_struct)
|
||||
tmp_dir.gen(DvcIgnore.DVCIGNORE_FILE, "\n".join(pattern_list))
|
||||
dvc._reset()
|
||||
result = walk_files(dvc, dvc.fs, tmp_dir / "dir")
|
||||
result = dvc.dvcignore.find(dvc.fs, tmp_dir / "dir")
|
||||
assert set(result) == {
|
||||
(tmp_dir / relpath).fs_path for relpath in result_set
|
||||
}
|
||||
@@ -265,7 +316,7 @@ def test_ignore_sub_directory(tmp_dir, dvc):
|
||||
tmp_dir.gen({"dir": {DvcIgnore.DVCIGNORE_FILE: "doc/fortz"}})
|
||||
|
||||
dvc._reset()
|
||||
result = walk_files(dvc, dvc.fs, tmp_dir / "dir")
|
||||
result = dvc.dvcignore.find(dvc.fs, tmp_dir / "dir")
|
||||
assert set(result) == {
|
||||
(tmp_dir / "dir" / "a" / "doc" / "fortz" / "a").fs_path,
|
||||
(tmp_dir / "dir" / DvcIgnore.DVCIGNORE_FILE).fs_path,
|
||||
@@ -277,7 +328,7 @@ def test_ignore_directory(tmp_dir, dvc):
|
||||
tmp_dir.gen({"dir": {"fortz": {}, "a": {"fortz": {}}}})
|
||||
tmp_dir.gen({"dir": {DvcIgnore.DVCIGNORE_FILE: "fortz"}})
|
||||
dvc._reset()
|
||||
result = walk_files(dvc, dvc.fs, tmp_dir / "dir")
|
||||
result = dvc.dvcignore.find(dvc.fs, tmp_dir / "dir")
|
||||
assert set(result) == {
|
||||
(tmp_dir / "dir" / DvcIgnore.DVCIGNORE_FILE).fs_path
|
||||
}
|
||||
@@ -288,7 +339,7 @@ def test_multi_ignore_file(tmp_dir, dvc, monkeypatch):
|
||||
tmp_dir.gen(DvcIgnore.DVCIGNORE_FILE, "dir/subdir/*_ignore")
|
||||
tmp_dir.gen({"dir": {DvcIgnore.DVCIGNORE_FILE: "!subdir/not_ignore"}})
|
||||
dvc._reset()
|
||||
result = walk_files(dvc, dvc.fs, tmp_dir / "dir")
|
||||
result = dvc.dvcignore.find(dvc.fs, tmp_dir / "dir")
|
||||
assert set(result) == {
|
||||
(tmp_dir / "dir" / "subdir" / "not_ignore").fs_path,
|
||||
(tmp_dir / "dir" / DvcIgnore.DVCIGNORE_FILE).fs_path,
|
||||
@@ -386,7 +437,7 @@ def test_ignore_in_added_dir(tmp_dir, dvc):
|
||||
dvc._reset()
|
||||
|
||||
ignored_path = tmp_dir / "dir" / "sub" / "ignored"
|
||||
result = walk_files(dvc, dvc.fs, ignored_path)
|
||||
result = dvc.dvcignore.find(dvc.fs, ignored_path)
|
||||
assert set(result) == set()
|
||||
assert ignored_path.exists()
|
||||
|
||||
|
||||
@@ -217,6 +217,68 @@ def test_pull_imported_stage(tmp_dir, dvc, erepo_dir):
|
||||
assert os.path.isfile(dst_cache)
|
||||
|
||||
|
||||
def test_import_no_download(tmp_dir, scm, dvc, erepo_dir):
|
||||
with erepo_dir.chdir():
|
||||
erepo_dir.dvc_gen("foo", "foo content", commit="create foo")
|
||||
|
||||
dvc.imp(os.fspath(erepo_dir), "foo", "foo_imported", no_download=True)
|
||||
|
||||
assert not os.path.exists("foo_imported")
|
||||
|
||||
dst_stage = Dvcfile(dvc, "foo_imported.dvc").stage
|
||||
|
||||
assert dst_stage.deps[0].def_repo == {
|
||||
"url": os.fspath(erepo_dir),
|
||||
"rev_lock": erepo_dir.scm.get_rev(),
|
||||
}
|
||||
assert scm.is_ignored("foo_imported")
|
||||
|
||||
|
||||
def test_pull_import_no_download(tmp_dir, scm, dvc, erepo_dir):
|
||||
with erepo_dir.chdir():
|
||||
erepo_dir.scm_gen(os.path.join("foo", "bar"), b"bar", commit="add bar")
|
||||
erepo_dir.dvc_gen(
|
||||
os.path.join("foo", "baz"), b"baz contents", commit="add baz"
|
||||
)
|
||||
size = (
|
||||
len(b"bar")
|
||||
+ len(b"baz contents")
|
||||
+ len((erepo_dir / "foo" / ".gitignore").read_bytes())
|
||||
)
|
||||
|
||||
dvc.imp(os.fspath(erepo_dir), "foo", "foo_imported", no_download=True)
|
||||
|
||||
dvc.pull(["foo_imported.dvc"])
|
||||
assert os.path.exists("foo_imported")
|
||||
|
||||
stage = Dvcfile(dvc, "foo_imported.dvc").stage
|
||||
|
||||
assert (
|
||||
stage.outs[0].hash_info.value == "bdb8641831d8fcb03939637e09011c21.dir"
|
||||
)
|
||||
|
||||
assert stage.outs[0].meta.size == size
|
||||
assert stage.outs[0].meta.nfiles == 3
|
||||
assert stage.outs[0].meta.isdir
|
||||
|
||||
|
||||
def test_pull_import_no_download_rev_lock(
|
||||
tmp_dir,
|
||||
dvc,
|
||||
erepo_dir,
|
||||
):
|
||||
with erepo_dir.chdir():
|
||||
erepo_dir.dvc_gen("foo", "foo content", commit="add")
|
||||
|
||||
dvc.imp(os.fspath(erepo_dir), "foo", "foo_imported", no_download=True)
|
||||
|
||||
with erepo_dir.chdir():
|
||||
erepo_dir.dvc_gen("foo", "modified foo content", commit="modify foo")
|
||||
|
||||
dvc.pull(["foo_imported.dvc"])
|
||||
assert (tmp_dir / "foo_imported").read_text() == "foo content"
|
||||
|
||||
|
||||
def test_cache_type_is_properly_overridden(tmp_dir, scm, dvc, erepo_dir):
|
||||
with erepo_dir.chdir():
|
||||
with erepo_dir.dvc.config.edit() as conf:
|
||||
|
||||
@@ -8,9 +8,10 @@ import pytest
|
||||
from dvc.annotations import Annotation
|
||||
from dvc.cli import main
|
||||
from dvc.dependency.base import Dependency, DependencyDoesNotExistError
|
||||
from dvc.dvcfile import Dvcfile
|
||||
from dvc.exceptions import InvalidArgumentError
|
||||
from dvc.stage import Stage
|
||||
from dvc.testing.test_workspace import TestImport as _TestImport
|
||||
from dvc.testing.workspace_tests import TestImport as _TestImport
|
||||
from dvc.utils.fs import makedirs
|
||||
from tests.basic_env import TestDvc
|
||||
|
||||
@@ -282,7 +283,7 @@ def test_import_url_to_remote_status(tmp_dir, dvc, local_cloud, local_remote):
|
||||
assert len(status) == 0
|
||||
|
||||
|
||||
def test_import_url_no_download(tmp_dir, dvc, local_workspace):
|
||||
def test_import_url_no_download(tmp_dir, scm, dvc, local_workspace):
|
||||
local_workspace.gen("file", "file content")
|
||||
dst = tmp_dir / "file"
|
||||
stage = dvc.imp_url(
|
||||
@@ -292,6 +293,7 @@ def test_import_url_no_download(tmp_dir, dvc, local_workspace):
|
||||
assert stage.deps[0].hash_info.value == "d10b4c3ff123b26dc068d43a8bef2d23"
|
||||
|
||||
assert not dst.exists()
|
||||
assert scm.is_ignored(dst)
|
||||
|
||||
out = stage.outs[0]
|
||||
assert not out.hash_info
|
||||
@@ -303,6 +305,21 @@ def test_import_url_no_download(tmp_dir, dvc, local_workspace):
|
||||
]
|
||||
|
||||
|
||||
def test_partial_import_pull(tmp_dir, scm, dvc, local_workspace):
|
||||
local_workspace.gen("file", "file content")
|
||||
dst = tmp_dir / "file"
|
||||
dvc.imp_url("remote://workspace/file", os.fspath(dst), no_download=True)
|
||||
|
||||
dvc.pull(["file.dvc"])
|
||||
|
||||
assert dst.exists()
|
||||
|
||||
stage = Dvcfile(dvc, "file.dvc").stage
|
||||
|
||||
assert stage.outs[0].hash_info.value == "d10b4c3ff123b26dc068d43a8bef2d23"
|
||||
assert stage.outs[0].meta.size == 12
|
||||
|
||||
|
||||
def test_imp_url_with_annotations(M, tmp_dir, dvc, local_workspace):
|
||||
local_workspace.gen("foo", "foo")
|
||||
annot = {
|
||||
|
||||
@@ -0,0 +1,5 @@
|
||||
from dvc.testing.workspace_tests import TestLsUrl as _TestLsUrl
|
||||
|
||||
|
||||
class TestLsUrl(_TestLsUrl):
|
||||
pass
|
||||
@@ -39,6 +39,22 @@ def _gen(tmp_dir, struct, name):
|
||||
(None, {"foo": "foo"}, {"bar": "bar"}, {"foo": "foo", "bar": "bar"}),
|
||||
(None, None, {"bar": "bar"}, {"bar": "bar"}),
|
||||
(None, {"foo": "foo"}, None, {"foo": "foo"}),
|
||||
(
|
||||
{"foo": "foo"},
|
||||
{"foo": "bar"},
|
||||
{"foo": "foo", "baz": "baz"},
|
||||
{"foo": "bar", "baz": "baz"},
|
||||
),
|
||||
({"foo": "foo"}, {}, {"foo": "foo", "bar": "bar"}, {"bar": "bar"}),
|
||||
(
|
||||
{"common": "common", "subdir": {"foo": "foo", "bar": "bar"}},
|
||||
{"common": "common", "subdir": {"foo": "foo", "bar": "baz"}},
|
||||
{"common": "common", "subdir": {"bar": "bar", "bizz": "bizz"}},
|
||||
{
|
||||
"common": "common",
|
||||
"subdir": {"bar": "baz", "bizz": "bizz"},
|
||||
},
|
||||
),
|
||||
],
|
||||
)
|
||||
def test_merge(tmp_dir, dvc, ancestor, our, their, merged):
|
||||
@@ -74,18 +90,15 @@ def test_merge(tmp_dir, dvc, ancestor, our, their, merged):
|
||||
{"foo": "foo"},
|
||||
{"foo": "bar"},
|
||||
{"foo": "baz"},
|
||||
(
|
||||
"unable to auto-merge directories with "
|
||||
"diff that contains 'change'ed files"
|
||||
),
|
||||
("unable to auto-merge the following paths:\nfoo"),
|
||||
),
|
||||
(
|
||||
{"common": "common", "foo": "foo"},
|
||||
{"common": "common", "bar": "bar"},
|
||||
{"baz": "baz"},
|
||||
(
|
||||
"unable to auto-merge directories with "
|
||||
"diff that contains 'remove'ed files"
|
||||
"unable to auto-merge the following paths:\n"
|
||||
"both deleted: ('foo',)"
|
||||
),
|
||||
),
|
||||
],
|
||||
|
||||
@@ -265,6 +265,23 @@ def test_collect_repo_ignored_dir_unignored_pattern(tmp_dir, dvc, scm):
|
||||
assert dvc.stage.collect_repo() == [stage]
|
||||
|
||||
|
||||
@pytest.mark.parametrize("with_deps", (False, True))
|
||||
def test_collect_symlink(tmp_dir, dvc, with_deps):
|
||||
tmp_dir.gen({"data": {"foo": "foo contents"}})
|
||||
foo_path = os.path.join("data", "foo")
|
||||
dvc.add(foo_path)
|
||||
|
||||
data_link = tmp_dir / "data_link"
|
||||
data_link.symlink_to("data")
|
||||
stage = list(
|
||||
dvc.stage.collect(
|
||||
target=str(data_link / "foo.dvc"), with_deps=with_deps
|
||||
)
|
||||
)[0]
|
||||
|
||||
assert stage.addressing == f"{foo_path}.dvc"
|
||||
|
||||
|
||||
def test_stage_strings_representation(tmp_dir, dvc, run_copy):
|
||||
tmp_dir.dvc_gen("foo", "foo")
|
||||
stage1 = run_copy("foo", "bar", single_stage=True)
|
||||
|
||||
@@ -183,6 +183,22 @@ def test_compose_and_dump(tmp_dir, suffix, overrides, expected):
|
||||
@pytest.mark.parametrize(
|
||||
"overrides, expected",
|
||||
[
|
||||
(
|
||||
{"params.yaml": ["defaults/foo=1,2"]},
|
||||
[
|
||||
{"params.yaml": ["defaults/foo=1"]},
|
||||
{"params.yaml": ["defaults/foo=2"]},
|
||||
],
|
||||
),
|
||||
(
|
||||
{"params.yaml": ["+foo=1,2", "~bar", "++foobar=5,6"]},
|
||||
[
|
||||
{"params.yaml": ["+foo=1", "~bar=null", "++foobar=5"]},
|
||||
{"params.yaml": ["+foo=1", "~bar=null", "++foobar=6"]},
|
||||
{"params.yaml": ["+foo=2", "~bar=null", "++foobar=5"]},
|
||||
{"params.yaml": ["+foo=2", "~bar=null", "++foobar=6"]},
|
||||
],
|
||||
),
|
||||
(
|
||||
{"params.yaml": ["foo=1,2", "bar=3,4"]},
|
||||
[
|
||||
|
||||
@@ -11,6 +11,7 @@ from bs4 import BeautifulSoup
|
||||
from funcy import first
|
||||
|
||||
from dvc.cli import main
|
||||
from dvc.render import REVISION_FIELD, VERSION_FIELD
|
||||
|
||||
JSON_OUT = "vis_data"
|
||||
|
||||
@@ -60,17 +61,6 @@ def extract_vega_specs(html_path, plots_ids):
|
||||
return result
|
||||
|
||||
|
||||
def filter_fields(datapoints: List[Dict], fields: List[str]):
|
||||
|
||||
tmp = deepcopy(datapoints)
|
||||
for datapoint in tmp:
|
||||
keys = set(datapoint.keys())
|
||||
for key in keys:
|
||||
if key not in fields:
|
||||
datapoint.pop(key)
|
||||
return tmp
|
||||
|
||||
|
||||
def drop_fields(datapoints: List[Dict], fields: List[str]):
|
||||
tmp = deepcopy(datapoints)
|
||||
for datapoint in tmp:
|
||||
@@ -219,10 +209,35 @@ def test_repo_with_plots(
|
||||
html_result = extract_vega_specs(
|
||||
html_path, ["linear.json", "confusion.json"]
|
||||
)
|
||||
|
||||
assert json_result["linear.json"][0]["content"]["data"][
|
||||
"values"
|
||||
] == _update_datapoints(
|
||||
linear_v1,
|
||||
{
|
||||
VERSION_FIELD: {
|
||||
"revision": "workspace",
|
||||
"filename": "linear.json",
|
||||
"field": "y",
|
||||
},
|
||||
},
|
||||
)
|
||||
assert html_result["linear.json"]["data"]["values"] == _update_datapoints(
|
||||
linear_v1,
|
||||
{
|
||||
"rev": "workspace",
|
||||
REVISION_FIELD: "workspace",
|
||||
},
|
||||
)
|
||||
assert json_result["confusion.json"][0]["content"]["data"][
|
||||
"values"
|
||||
] == _update_datapoints(
|
||||
confusion_v1,
|
||||
{
|
||||
VERSION_FIELD: {
|
||||
"revision": "workspace",
|
||||
"filename": "confusion.json",
|
||||
"field": "actual",
|
||||
},
|
||||
},
|
||||
)
|
||||
assert html_result["confusion.json"]["data"][
|
||||
@@ -230,10 +245,9 @@ def test_repo_with_plots(
|
||||
] == _update_datapoints(
|
||||
confusion_v1,
|
||||
{
|
||||
"rev": "workspace",
|
||||
REVISION_FIELD: "workspace",
|
||||
},
|
||||
)
|
||||
|
||||
verify_image(
|
||||
tmp_dir, "workspace", "image.png", image_v1, html_path, json_result
|
||||
)
|
||||
@@ -280,17 +294,59 @@ def test_repo_with_plots(
|
||||
html_path,
|
||||
["../linear.json", "../confusion.json"],
|
||||
)
|
||||
assert json_result["../linear.json"][0]["content"]["data"][
|
||||
"values"
|
||||
] == _update_datapoints(
|
||||
linear_v2,
|
||||
{
|
||||
VERSION_FIELD: {
|
||||
"revision": "workspace",
|
||||
"filename": "../linear.json",
|
||||
"field": "y",
|
||||
},
|
||||
},
|
||||
) + _update_datapoints(
|
||||
linear_v1,
|
||||
{
|
||||
VERSION_FIELD: {
|
||||
"revision": "HEAD",
|
||||
"filename": "../linear.json",
|
||||
"field": "y",
|
||||
},
|
||||
},
|
||||
)
|
||||
assert html_result["../linear.json"]["data"][
|
||||
"values"
|
||||
] == _update_datapoints(
|
||||
linear_v2,
|
||||
{
|
||||
"rev": "workspace",
|
||||
REVISION_FIELD: "workspace",
|
||||
},
|
||||
) + _update_datapoints(
|
||||
linear_v1,
|
||||
{
|
||||
"rev": "HEAD",
|
||||
REVISION_FIELD: "HEAD",
|
||||
},
|
||||
)
|
||||
assert json_result["../confusion.json"][0]["content"]["data"][
|
||||
"values"
|
||||
] == _update_datapoints(
|
||||
confusion_v2,
|
||||
{
|
||||
VERSION_FIELD: {
|
||||
"revision": "workspace",
|
||||
"filename": "../confusion.json",
|
||||
"field": "actual",
|
||||
},
|
||||
},
|
||||
) + _update_datapoints(
|
||||
confusion_v1,
|
||||
{
|
||||
VERSION_FIELD: {
|
||||
"revision": "HEAD",
|
||||
"filename": "../confusion.json",
|
||||
"field": "actual",
|
||||
},
|
||||
},
|
||||
)
|
||||
assert html_result["../confusion.json"]["data"][
|
||||
@@ -298,12 +354,12 @@ def test_repo_with_plots(
|
||||
] == _update_datapoints(
|
||||
confusion_v2,
|
||||
{
|
||||
"rev": "workspace",
|
||||
REVISION_FIELD: "workspace",
|
||||
},
|
||||
) + _update_datapoints(
|
||||
confusion_v1,
|
||||
{
|
||||
"rev": "HEAD",
|
||||
REVISION_FIELD: "HEAD",
|
||||
},
|
||||
)
|
||||
|
||||
@@ -390,11 +446,9 @@ def test_repo_with_config_plots(tmp_dir, capsys, repo_with_config_plots):
|
||||
repo_state = repo_with_config_plots()
|
||||
plots = next(repo_state)
|
||||
|
||||
html_path, json_result, split_json_result = call(capsys)
|
||||
html_path, _, __ = call(capsys)
|
||||
|
||||
assert os.path.exists(html_path)
|
||||
assert json_result == {}
|
||||
assert split_json_result == {}
|
||||
html_result = extract_vega_specs(
|
||||
html_path,
|
||||
[
|
||||
@@ -405,9 +459,15 @@ def test_repo_with_config_plots(tmp_dir, capsys, repo_with_config_plots):
|
||||
assert html_result["dvc.yaml::linear_train_vs_test"]["data"][
|
||||
"values"
|
||||
] == _update_datapoints(
|
||||
plots["data"]["linear_train.json"], {"rev": "linear_train.json"}
|
||||
plots["data"]["linear_train.json"],
|
||||
{
|
||||
REVISION_FIELD: "linear_train.json",
|
||||
},
|
||||
) + _update_datapoints(
|
||||
plots["data"]["linear_test.json"], {"rev": "linear_test.json"}
|
||||
plots["data"]["linear_test.json"],
|
||||
{
|
||||
REVISION_FIELD: "linear_test.json",
|
||||
},
|
||||
)
|
||||
|
||||
# TODO check json results once vscode is able to handle flexible plots
|
||||
|
||||
@@ -1,19 +0,0 @@
|
||||
from dvc.cli import main
|
||||
|
||||
|
||||
def test_viztracer(tmp_dir, dvc, mocker):
|
||||
viztracer_profile = mocker.patch("dvc._debug.viztracer_profile")
|
||||
|
||||
assert main(["status", "--viztracer"]) == 0
|
||||
|
||||
args = viztracer_profile.call_args[1]
|
||||
assert callable(args["path"])
|
||||
assert args["max_stack_depth"] == -1
|
||||
|
||||
assert main(["status", "--viztracer", "--viztracer-depth", "5"]) == 0
|
||||
args = viztracer_profile.call_args[1]
|
||||
assert args["max_stack_depth"] == 5
|
||||
|
||||
assert main(["status", "--viztracer-depth", "2"]) == 0
|
||||
args = viztracer_profile.call_args[1]
|
||||
assert args["max_stack_depth"] == 2
|
||||
@@ -95,6 +95,8 @@ def test_experiments_show(dvc, scm, mocker):
|
||||
"--all-tags",
|
||||
"--all-branches",
|
||||
"--all-commits",
|
||||
"--hide-queued",
|
||||
"--hide-failed",
|
||||
"--sha",
|
||||
"--param-deps",
|
||||
"-n",
|
||||
@@ -115,6 +117,8 @@ def test_experiments_show(dvc, scm, mocker):
|
||||
all_tags=True,
|
||||
all_branches=True,
|
||||
all_commits=True,
|
||||
hide_queued=True,
|
||||
hide_failed=True,
|
||||
num=1,
|
||||
revs="foo",
|
||||
sha_only=True,
|
||||
@@ -433,8 +437,7 @@ def test_show_experiments_csv(capsys):
|
||||
}
|
||||
}
|
||||
},
|
||||
"queued": False,
|
||||
"running": False,
|
||||
"status": "Success",
|
||||
"executor": None,
|
||||
"metrics": {
|
||||
"scores.json": {
|
||||
@@ -470,8 +473,7 @@ def test_show_experiments_csv(capsys):
|
||||
}
|
||||
}
|
||||
},
|
||||
"queued": False,
|
||||
"running": False,
|
||||
"status": "Success",
|
||||
"executor": None,
|
||||
"metrics": {
|
||||
"scores.json": {
|
||||
@@ -506,8 +508,7 @@ def test_show_experiments_csv(capsys):
|
||||
}
|
||||
}
|
||||
},
|
||||
"queued": True,
|
||||
"running": True,
|
||||
"status": "Running",
|
||||
"executor": None,
|
||||
"metrics": {
|
||||
"scores.json": {
|
||||
@@ -561,8 +562,7 @@ def test_show_experiments_md(capsys):
|
||||
"data": {
|
||||
"timestamp": None,
|
||||
"params": {"params.yaml": {"data": {"foo": 1}}},
|
||||
"queued": False,
|
||||
"running": False,
|
||||
"status": "Success",
|
||||
"executor": None,
|
||||
"metrics": {
|
||||
"scores.json": {"data": {"bar": 0.9544670443829399}}
|
||||
@@ -599,8 +599,7 @@ def test_show_experiments_sort_by(capsys, sort_order):
|
||||
}
|
||||
}
|
||||
},
|
||||
"queued": False,
|
||||
"running": False,
|
||||
"status": "Success",
|
||||
"executor": None,
|
||||
"metrics": {},
|
||||
}
|
||||
@@ -617,8 +616,7 @@ def test_show_experiments_sort_by(capsys, sort_order):
|
||||
}
|
||||
}
|
||||
},
|
||||
"queued": False,
|
||||
"running": False,
|
||||
"status": "Success",
|
||||
"executor": None,
|
||||
"metrics": {},
|
||||
"name": "master",
|
||||
@@ -634,8 +632,7 @@ def test_show_experiments_sort_by(capsys, sort_order):
|
||||
}
|
||||
}
|
||||
},
|
||||
"queued": False,
|
||||
"running": False,
|
||||
"status": "Success",
|
||||
"executor": None,
|
||||
"metrics": {},
|
||||
"name": "exp-89140",
|
||||
@@ -651,8 +648,7 @@ def test_show_experiments_sort_by(capsys, sort_order):
|
||||
}
|
||||
}
|
||||
},
|
||||
"queued": False,
|
||||
"running": False,
|
||||
"status": "Success",
|
||||
"executor": None,
|
||||
"metrics": {},
|
||||
"name": "exp-43537",
|
||||
@@ -668,8 +664,7 @@ def test_show_experiments_sort_by(capsys, sort_order):
|
||||
}
|
||||
}
|
||||
},
|
||||
"queued": False,
|
||||
"running": False,
|
||||
"status": "Success",
|
||||
"executor": None,
|
||||
"metrics": {},
|
||||
"name": "exp-4f89e",
|
||||
@@ -915,8 +910,7 @@ def test_show_experiments_pcp(tmp_dir, mocker):
|
||||
"data": {
|
||||
"timestamp": None,
|
||||
"params": {"params.yaml": {"data": {"foo": 1}}},
|
||||
"queued": False,
|
||||
"running": False,
|
||||
"status": "Success",
|
||||
"executor": None,
|
||||
"metrics": {
|
||||
"scores.json": {"data": {"bar": 0.9544670443829399}}
|
||||
|
||||
@@ -41,6 +41,7 @@ def test_import_url(mocker):
|
||||
labels=None,
|
||||
meta=None,
|
||||
jobs=4,
|
||||
version_aware=False,
|
||||
)
|
||||
|
||||
|
||||
@@ -98,6 +99,7 @@ def test_import_url_no_exec_download_flags(mocker, flag, expected):
|
||||
type=None,
|
||||
labels=None,
|
||||
meta=None,
|
||||
version_aware=False,
|
||||
**expected
|
||||
)
|
||||
|
||||
@@ -135,6 +137,7 @@ def test_import_url_to_remote(mocker):
|
||||
labels=None,
|
||||
meta=None,
|
||||
jobs=None,
|
||||
version_aware=False,
|
||||
)
|
||||
|
||||
|
||||
|
||||
@@ -0,0 +1,24 @@
|
||||
from dvc.cli import parse_args
|
||||
from dvc.commands.ls_url import CmdListUrl
|
||||
|
||||
|
||||
def test_ls_url(mocker):
|
||||
cli_args = parse_args(["ls-url", "src"])
|
||||
assert cli_args.func == CmdListUrl
|
||||
cmd = cli_args.func(cli_args)
|
||||
m = mocker.patch("dvc.repo.Repo.ls_url", autospec=True)
|
||||
|
||||
assert cmd.run() == 0
|
||||
|
||||
m.assert_called_once_with("src", recursive=False)
|
||||
|
||||
|
||||
def test_recursive(mocker):
|
||||
cli_args = parse_args(["ls-url", "-R", "src"])
|
||||
assert cli_args.func == CmdListUrl
|
||||
cmd = cli_args.func(cli_args)
|
||||
m = mocker.patch("dvc.repo.Repo.ls_url", autospec=True)
|
||||
|
||||
assert cmd.run() == 0
|
||||
|
||||
m.assert_called_once_with("src", recursive=True)
|
||||
@@ -334,10 +334,6 @@ def test_plots_diff_json(dvc, mocker, capsys):
|
||||
)
|
||||
render_mock = mocker.patch("dvc_render.render_html")
|
||||
|
||||
show_json_mock = mocker.patch(
|
||||
"dvc.commands.plots._filter_unhandled_renderers",
|
||||
return_value=renderers,
|
||||
)
|
||||
show_json_mock = mocker.patch("dvc.commands.plots._show_json")
|
||||
|
||||
assert cmd.run() == 0
|
||||
|
||||
@@ -8,7 +8,7 @@ def test_run(mocker, dvc):
|
||||
[
|
||||
"run",
|
||||
"--name",
|
||||
"nam",
|
||||
"name",
|
||||
"--deps",
|
||||
"deps",
|
||||
"--outs",
|
||||
@@ -86,7 +86,7 @@ def test_run(mocker, dvc):
|
||||
no_commit=True,
|
||||
always_changed=True,
|
||||
cmd="command",
|
||||
name="nam",
|
||||
name="name",
|
||||
single_stage=False,
|
||||
external=True,
|
||||
desc="description",
|
||||
|
||||
@@ -1,10 +1,12 @@
|
||||
from dataclasses import dataclass
|
||||
|
||||
import pytest
|
||||
from dvc_http import HTTPFileSystem, HTTPSFileSystem
|
||||
from dvc_s3 import S3FileSystem
|
||||
from dvc_ssh import SSHFileSystem
|
||||
|
||||
from dvc.config import RemoteNotFoundError
|
||||
from dvc.fs import LocalFileSystem, get_fs_cls, get_fs_config
|
||||
from dvc.fs import LocalFileSystem, get_cloud_fs, get_fs_cls, get_fs_config
|
||||
|
||||
url_cls_pairs = [
|
||||
("s3://bucket/path", S3FileSystem),
|
||||
@@ -36,5 +38,39 @@ def test_get_fs_cls(url, cls):
|
||||
|
||||
|
||||
def test_get_fs_config():
|
||||
result = get_fs_config({}, url="ssh://example.com:/dir/path")
|
||||
assert result == {"url": "ssh://example.com:/dir/path"}
|
||||
|
||||
|
||||
def test_get_fs_config_error():
|
||||
with pytest.raises(RemoteNotFoundError):
|
||||
get_fs_config(None, {"remote": {}}, name="myremote")
|
||||
get_fs_config({"remote": {}}, name="myremote")
|
||||
|
||||
|
||||
def test_remote_url():
|
||||
config = {
|
||||
"remote": {
|
||||
"base": {"url": "http://example.com"},
|
||||
"r1": {"url": "remote://base/r1", "user": "user"},
|
||||
"r2": {"url": "remote://r1/r2", "password": "123"},
|
||||
}
|
||||
}
|
||||
result = get_fs_config(config, url="remote://r2/foo")
|
||||
assert result == {
|
||||
"password": "123",
|
||||
"user": "user",
|
||||
"url": "http://example.com/r1/r2/foo",
|
||||
}
|
||||
|
||||
|
||||
@dataclass
|
||||
class FakeRepo:
|
||||
config: dict
|
||||
|
||||
|
||||
def test_get_cloud_fs():
|
||||
repo = FakeRepo({})
|
||||
cls, config, path = get_cloud_fs(repo, url="ssh://example.com:/dir/path")
|
||||
assert cls is SSHFileSystem
|
||||
assert config == {"host": "example.com", "verify": False}
|
||||
assert path == "/dir/path"
|
||||
|
||||
@@ -1,184 +0,0 @@
|
||||
# pylint: disable=W0613
|
||||
|
||||
import getpass
|
||||
import os
|
||||
from unittest.mock import mock_open, patch
|
||||
|
||||
import pytest
|
||||
from dvc_ssh import DEFAULT_PORT, SSHFileSystem
|
||||
|
||||
|
||||
def test_get_kwargs_from_urls():
|
||||
user = "test"
|
||||
host = "123.45.67.89"
|
||||
port = 1234
|
||||
path = "/path/to/dir"
|
||||
|
||||
# URL ssh://[user@]host.xz[:port]/path
|
||||
url = f"ssh://{user}@{host}:{port}{path}"
|
||||
|
||||
assert SSHFileSystem._get_kwargs_from_urls(url) == {
|
||||
"username": user,
|
||||
"host": host,
|
||||
"port": port,
|
||||
}
|
||||
|
||||
# SCP-like URL ssh://[user@]host.xz:/absolute/path
|
||||
url = f"ssh://{user}@{host}:{path}"
|
||||
|
||||
assert SSHFileSystem._get_kwargs_from_urls(url) == {
|
||||
"username": user,
|
||||
"host": host,
|
||||
}
|
||||
|
||||
|
||||
def test_init():
|
||||
fs = SSHFileSystem(
|
||||
user="test", host="12.34.56.78", port="1234", password="xxx"
|
||||
)
|
||||
assert fs.fs_args["username"] == "test"
|
||||
assert fs.fs_args["host"] == "12.34.56.78"
|
||||
assert fs.fs_args["port"] == "1234"
|
||||
assert fs.fs_args["password"] == fs.fs_args["passphrase"] == "xxx"
|
||||
|
||||
|
||||
def test_ssh_ask_password(mocker):
|
||||
mocker.patch("dvc_ssh.ask_password", return_value="fish")
|
||||
fs = SSHFileSystem(user="test", host="2.2.2.2", ask_password=True)
|
||||
assert fs.fs_args["password"] == fs.fs_args["passphrase"] == "fish"
|
||||
|
||||
|
||||
mock_ssh_config = """
|
||||
Host example.com
|
||||
User ubuntu
|
||||
HostName 1.2.3.4
|
||||
Port 1234
|
||||
IdentityFile ~/.ssh/not_default.key
|
||||
"""
|
||||
|
||||
|
||||
@pytest.mark.parametrize(
|
||||
"config,expected_host",
|
||||
[
|
||||
({"host": "example.com"}, "1.2.3.4"),
|
||||
({"host": "not_in_ssh_config.com"}, "not_in_ssh_config.com"),
|
||||
],
|
||||
)
|
||||
@patch(
|
||||
"builtins.open",
|
||||
new_callable=mock_open,
|
||||
read_data=mock_ssh_config,
|
||||
)
|
||||
def test_ssh_host_override_from_config(mock_file, config, expected_host):
|
||||
fs = SSHFileSystem(**config)
|
||||
assert fs.fs_args["host"] == expected_host
|
||||
|
||||
|
||||
@pytest.mark.parametrize(
|
||||
"config,expected_user",
|
||||
[
|
||||
({"host": "example.com", "user": "test1"}, "test1"),
|
||||
({"host": "example.com"}, "ubuntu"),
|
||||
({"host": "not_in_ssh_config.com", "user": "test1"}, "test1"),
|
||||
({"host": "not_in_ssh_config.com"}, getpass.getuser()),
|
||||
],
|
||||
)
|
||||
@patch(
|
||||
"builtins.open",
|
||||
new_callable=mock_open,
|
||||
read_data=mock_ssh_config,
|
||||
)
|
||||
def test_ssh_user(mock_file, config, expected_user):
|
||||
fs = SSHFileSystem(**config)
|
||||
assert fs.fs_args["username"] == expected_user
|
||||
|
||||
|
||||
@pytest.mark.parametrize(
|
||||
"config,expected_port",
|
||||
[
|
||||
({"host": "example.com"}, 1234),
|
||||
({"host": "example.com", "port": 4321}, 4321),
|
||||
({"host": "not_in_ssh_config.com"}, DEFAULT_PORT),
|
||||
({"host": "not_in_ssh_config.com", "port": 2222}, 2222),
|
||||
],
|
||||
)
|
||||
@patch(
|
||||
"builtins.open",
|
||||
new_callable=mock_open,
|
||||
read_data=mock_ssh_config,
|
||||
)
|
||||
def test_ssh_port(mock_file, config, expected_port):
|
||||
fs = SSHFileSystem(**config)
|
||||
assert fs.fs_args["port"] == expected_port
|
||||
|
||||
|
||||
@pytest.mark.parametrize(
|
||||
"config,expected_keyfile",
|
||||
[
|
||||
(
|
||||
{"host": "example.com", "keyfile": "dvc_config.key"},
|
||||
["dvc_config.key"],
|
||||
),
|
||||
(
|
||||
{"host": "example.com"},
|
||||
["~/.ssh/not_default.key"],
|
||||
),
|
||||
(
|
||||
{
|
||||
"host": "not_in_ssh_config.com",
|
||||
"keyfile": "dvc_config.key",
|
||||
},
|
||||
["dvc_config.key"],
|
||||
),
|
||||
({"host": "not_in_ssh_config.com"}, None),
|
||||
],
|
||||
)
|
||||
@patch(
|
||||
"builtins.open",
|
||||
new_callable=mock_open,
|
||||
read_data=mock_ssh_config,
|
||||
)
|
||||
def test_ssh_keyfile(mock_file, config, expected_keyfile):
|
||||
fs = SSHFileSystem(**config)
|
||||
expected_keyfiles = (
|
||||
[os.path.expanduser(path) for path in expected_keyfile]
|
||||
if expected_keyfile
|
||||
else expected_keyfile
|
||||
)
|
||||
assert fs.fs_args.get("client_keys") == expected_keyfiles
|
||||
|
||||
|
||||
mock_ssh_multi_key_config = """
|
||||
IdentityFile file_1
|
||||
|
||||
Host example.com
|
||||
IdentityFile file_2
|
||||
"""
|
||||
|
||||
|
||||
@patch(
|
||||
"builtins.open",
|
||||
new_callable=mock_open,
|
||||
read_data=mock_ssh_multi_key_config,
|
||||
)
|
||||
def test_ssh_multi_identity_files(mock_file):
|
||||
fs = SSHFileSystem(host="example.com")
|
||||
assert fs.fs_args.get("client_keys") == ["file_1", "file_2"]
|
||||
|
||||
|
||||
@pytest.mark.parametrize(
|
||||
"config,expected_gss_auth",
|
||||
[
|
||||
({"host": "example.com", "gss_auth": True}, True),
|
||||
({"host": "example.com", "gss_auth": False}, False),
|
||||
({"host": "not_in_ssh_config.com"}, False),
|
||||
],
|
||||
)
|
||||
@patch(
|
||||
"builtins.open",
|
||||
new_callable=mock_open,
|
||||
read_data=mock_ssh_config,
|
||||
)
|
||||
def test_ssh_gss_auth(mock_file, config, expected_gss_auth):
|
||||
fs = SSHFileSystem(**config)
|
||||
assert fs.fs_args["gss_auth"] == expected_gss_auth
|
||||
Some files were not shown because too many files have changed in this diff Show More
Reference in New Issue
Block a user