Commit Graph
7260 Commits
Author SHA1 Message Date
David de la Iglesia Castro f1dc9e50a7 debug: Add support for viztracer profiler. 2022-01-25 20:28:41 +05:45
Saugat Pachhai (सौगात) 2f15f30b0e exp run: do not log message twice on workspace executor
Fixes #7276.
2022-01-25 19:01:48 +05:45
Peter Rowlands 47d10c4a8b utils: add decorator to wrap diskcache pickle errors 2022-01-25 16:21:53 +09:00
David de la Iglesia Castro 822b501069 add: Update help of --jobs 2022-01-24 21:06:47 +01:00
Saugat Pachhai (सौगात) 943481f0a3 exp init: handle exception properly on missing parameters file 2022-01-24 17:43:29 +05:45
Jeff Hale b30385885b Fix 3 README links so that they render in GitHub 2022-01-24 15:55:12 +09:00
David de la Iglesia Castro d4861d535a TabularData: Simplify drop internals.
Update `subset` type hint.
2022-01-22 09:41:29 +08:00
dberenbaum 646097a735 update exp init help text 2022-01-21 11:07:32 +05:45
David de la Iglesia Castro 43953ace53 exp show: Add --drop and --keep args
Removed `--include-metrics` / `--include-params` and
`--exclude-metrics` / `--exclude-params`.

Removed `--no-timestamp` . Can be done by `--drop Created`.

`--drop` and `--keep` operate directly on the table columns.

`--keep` does not perform any filtering. It's only used
to specify columns to keep despite the other filtering.

For example `--only-changed --keep foo` will prevent
`foo` from being removed by `--only-changed`.

Another example, `--drop train.* --keep train.dropout`
will remove all columns matching `train.*` except for
`train.dropout`.

Closes #7079
Closes #7080
Pre-requisite for #6434
2022-01-20 03:28:33 +01:00
David de la Iglesia Castro 255e6a1aec TabularData: Support protected`columns.
TabularData: Add subset arg to dropna and drop_duplicates.

Closes #7083
2022-01-20 03:28:33 +01:00
Saugat Pachhai (सौगात) 73fee513b9 cli: improve startup speed
fsspec callbacks were making us lose 35ms (~207 ms vs 170ms now).
These are now extracted from dvc.progress to dvc.fs._callback.
2022-01-19 20:38:19 +02:00
Saugat Pachhai (सौगात) b0f65cbd17 tests: increase timeout for exp init tests 2022-01-19 20:26:41 +05:45
Saugat Pachhai (सौगात) 672f079cc6 tests: clean repositories before each test runs 2022-01-19 20:21:48 +05:45
Saugat Pachhai (सौगात) 446516d788 refactor: rename dvc.command to dvc.commands 2022-01-19 19:41:40 +05:45
Saugat Pachhai (सौगात) 1b3e1251e6 cli refactor: move dvc.command.base to dvc.cli.command 2022-01-19 19:41:40 +05:45
Saugat Pachhai (सौगात) 4268b5a339 cli: don't inherit DvcParserError from DvcException, move to dvc.cli 2022-01-19 19:41:40 +05:45
Saugat Pachhai (सौगात) f5baf990cf cli: refactor into a module
By splitting dvc.cli into a module, we'll be able to share cli-related
utilities, split parser-related stuffs into smaller parts, improve
reusability and improve API for command extensions in the future.
2022-01-19 12:22:07 +02:00
dependabot[bot] 69ff760e4b build(deps-dev): Bump pytest-timeout from 2.0.2 to 2.1.0
Bumps [pytest-timeout](https://github.com/pytest-dev/pytest-timeout) from 2.0.2 to 2.1.0.
- [Release notes](https://github.com/pytest-dev/pytest-timeout/releases)
- [Commits](https://github.com/pytest-dev/pytest-timeout/compare/2.0.2...2.1.0)

---
updated-dependencies:
- dependency-name: pytest-timeout
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-01-19 10:57:17 +05:45
Saugat Pachhai (सौगात) 4ba504be3e repro/exp run: display stage instead of filepath on failure
Before it used to say 'failed to reproduce dvc.yaml', which is now changed
to print 'failed to reproduce train' or something similar.

For stages that are in dvc.yaml in the current working directory, it will
just print the stage names. For stages in other dvc.yaml files, it'll print

in <relative_path>:<stage_name>.
2022-01-19 06:58:40 +05:45
Ruslan Kuprieiev 377b0bc689 find_root: unify error message
We used to use that message for special external repo cases, but we don't
need it anymore.

Fixes #7281

Leftover from #7214
2022-01-19 01:39:48 +02:00
Matt Seddon 89f2d42df8 plots: update linear template so colors can be externally overwritten 2022-01-18 12:42:17 +01:00
karajan1001 57263f15fa Pull: accept multiple as input(#7196)
fix: #7196

New feature: now `dvc exp pull` can accept a list of experiment names as input.

2. add support to list input for the `exp pull`
3. add function tests for the multi exp pull
4. add unit test for the arg parse
2022-01-18 17:31:55 +08:00
karajan1001 9bb6494e55 Push: accept multiple as input(#7196)
fix: #7196

New feature: now `dvc exp push` can accept a list of experiment names as input.

1. refactor of experiment push
2. add support to list input for the `exp push`
3. add function tests for the multi exp push
4. add unit test for the arg parse
2022-01-18 17:31:55 +08:00
Ruslan Kuprieiev 13238e9716 objects: fix imports 2022-01-15 21:39:39 +02:00
Ruslan Kuprieiev 85181e396f objects: fix empty line 2022-01-15 21:20:09 +02:00
Ruslan Kuprieiev 4c3c492b90 objects: don't forget __init__.py 2022-01-15 21:16:20 +02:00
dependabot[bot] 474812195e build(deps-dev): Bump wsgidav from 3.1.1 to 4.0.1
Bumps [wsgidav](https://github.com/mar10/wsgidav) from 3.1.1 to 4.0.1.
- [Release notes](https://github.com/mar10/wsgidav/releases)
- [Changelog](https://github.com/mar10/wsgidav/blob/master/CHANGELOG.md)
- [Commits](https://github.com/mar10/wsgidav/compare/v3.1.1...v4.0.1)

---
updated-dependencies:
- dependency-name: wsgidav
  dependency-type: direct:development
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-01-14 09:12:16 +05:45
Saugat Pachhai c83612be71 deps-dev: don't specify pygments explicitly
pygments is a transitive dependency for us, from `rich` and here it was for `collective.checkdocs`.
2022-01-14 09:11:20 +05:45
dependabot[bot] 161e7892ba build(deps-dev): Bump google-cloud-storage from 1.43.0 to 2.0.0
Bumps [google-cloud-storage](https://github.com/googleapis/python-storage) from 1.43.0 to 2.0.0.
- [Release notes](https://github.com/googleapis/python-storage/releases)
- [Changelog](https://github.com/googleapis/python-storage/blob/main/CHANGELOG.md)
- [Commits](https://github.com/googleapis/python-storage/compare/v1.43.0...v2.0.0)

---
updated-dependencies:
- dependency-name: google-cloud-storage
  dependency-type: direct:development
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-01-14 09:02:38 +05:45
dependabot[bot] 0a0e3c3f9c build(deps-dev): Bump types-requests from 2.27.5 to 2.27.7
Bumps [types-requests](https://github.com/python/typeshed) from 2.27.5 to 2.27.7.
- [Release notes](https://github.com/python/typeshed/releases)
- [Commits](https://github.com/python/typeshed/commits)

---
updated-dependencies:
- dependency-name: types-requests
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-01-14 09:02:25 +05:45
dependabot[bot] ac2feb2340 build(deps): Bump pyinstaller from 4.7 to 4.8
Bumps [pyinstaller](https://github.com/pyinstaller/pyinstaller) from 4.7 to 4.8.
- [Release notes](https://github.com/pyinstaller/pyinstaller/releases)
- [Changelog](https://github.com/pyinstaller/pyinstaller/blob/develop/doc/CHANGES-3.rst)
- [Commits](https://github.com/pyinstaller/pyinstaller/compare/v4.7...v4.8)

---
updated-dependencies:
- dependency-name: pyinstaller
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-01-13 17:00:03 +09:00
Peter Rowlands dd5d999644 exp: add exp run --machine flag 2022-01-13 16:34:20 +09:00
Peter Rowlands 3c7695b39d exp: add SSHExecutor.reproduce via exp exec-run 2022-01-13 16:34:20 +09:00
Peter Rowlands 367e5d1429 exp: add exec-run plumbing command to run exp from ExecutorInfo 2022-01-13 16:34:20 +09:00
Peter Rowlands fb16cd06e3 machine: update behavior for exp ssh executors
- log startup script finished message
- add setup_script option for runtime env setup
2022-01-13 16:34:20 +09:00
Peter Rowlands 39eee9b5a6 exp: implement git + DVC cache collection for ssh executors 2022-01-13 16:34:20 +09:00
Peter Rowlands 84da78a62b exp: initial SSHExecutorManager implementation 2022-01-13 16:34:20 +09:00
Peter Rowlands 4b9d39c901 push/fetch: support push/fetch to specific ODB
- prerequisite for remote execution
- allow explicitly pushing imports which would normally be skipped
  (internal-use only, does not apply to `dvc push`)
2022-01-13 16:34:20 +09:00
David de la Iglesia Castro 5b8bf52eab plots: Fix --json requiring -o.
`-o` was being required even when renderers don't need output path.
2022-01-12 18:00:08 +01:00
karajan1001andPeter Rowlands b673ac24d0 exp show: add --rev flag (#7152)
fix: #7152
1. Add `--rev` flag to `dvc exp show`.
2. Add -1 support for `--num` flag`.
3. Extract revision found logic to `utils`.
4. Brancher use this revision found logic.
5. Update command unit test
6. Add a util unit test.

Co-authored-by: Peter Rowlands (변기호) <[email protected]>
2022-01-11 19:01:34 +08:00
Saugat Pachhai (सौगात) 87abeaddc2 rich-table: fix add_column args/kwargs
Rich added `vertical` kwarg in `add_column`, which linter
is now complaining (as it should). But this may keep on breaking
when rich adds/removes args/kwargs in the future.

So, this commit uses (*args, **kwargs) instead of specifying particular
parameters explicitly. This also sets `collapse` directly to the
`rich.table.Column` rather than extending through our one `Column`
implementation.
2022-01-11 11:28:54 +05:45
dependabot[bot] a3dece8236 build(deps-dev): Bump types-tabulate from 0.8.4 to 0.8.5
Bumps [types-tabulate](https://github.com/python/typeshed) from 0.8.4 to 0.8.5.
- [Release notes](https://github.com/python/typeshed/releases)
- [Commits](https://github.com/python/typeshed/commits)

---
updated-dependencies:
- dependency-name: types-tabulate
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-01-11 09:19:36 +05:45
dependabot[bot] 221adf246b build(deps-dev): Bump types-toml from 0.10.1 to 0.10.3
Bumps [types-toml](https://github.com/python/typeshed) from 0.10.1 to 0.10.3.
- [Release notes](https://github.com/python/typeshed/releases)
- [Commits](https://github.com/python/typeshed/commits)

---
updated-dependencies:
- dependency-name: types-toml
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-01-11 09:10:44 +05:45
dependabot[bot] 8681086bfb build(deps-dev): Bump mypy from 0.930 to 0.931
Bumps [mypy](https://github.com/python/mypy) from 0.930 to 0.931.
- [Release notes](https://github.com/python/mypy/releases)
- [Commits](https://github.com/python/mypy/compare/v0.930...v0.931)

---
updated-dependencies:
- dependency-name: mypy
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-01-11 09:02:39 +05:45
dependabot[bot] 6c3b1370a3 build(deps-dev): Bump types-requests from 2.26.3 to 2.27.5
Bumps [types-requests](https://github.com/python/typeshed) from 2.26.3 to 2.27.5.
- [Release notes](https://github.com/python/typeshed/releases)
- [Commits](https://github.com/python/typeshed/commits)

---
updated-dependencies:
- dependency-name: types-requests
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-01-11 08:36:12 +05:45
Ruslan Kuprieiev 9a01d98876 odb: move gc into a separate function 2022-01-11 01:52:34 +02:00
Ruslan Kuprieiev e190433249 lint: add new ignores
mypy:

```
dvc/utils/table.py: note: In member "add_column" of class "Table":
dvc/utils/table.py:24:5: error: Argument 7 of "add_column" is incompatible with
supertype "Table"; supertype defines the argument type as
"Union[Literal['top'], Literal['middle'], Literal['bottom']]"  [override]
        def add_column(  # pylint: disable=arguments-differ
        ^
dvc/utils/table.py:24:5: note: This violates the Liskov substitution principle
dvc/utils/table.py:24:5: note: See https://mypy.readthedocs.io/en/stable/common_issues.html#incompatible-overrides
dvc/utils/table.py:24:5: error: Argument 8 of "add_column" is incompatible with
supertype "Table"; supertype defines the argument type as
"Union[Literal['fold'], Literal['crop'], Literal['ellipsis'], Literal['ignore']]"
 [override]
        def add_column(  # pylint: disable=arguments-differ
        ^
dvc/utils/table.py:24:5: error: Argument 12 of "add_column" is incompatible
with supertype "Table"; supertype defines the argument type as "Optional[int]"
[override]
        def add_column(  # pylint: disable=arguments-differ
        ^
Found 3 errors in 1 file (checked 129 source files)
dvc/ui/table.py:87: note: In module imported here,
dvc/compare.py:25: note: ... from here:
dvc/utils/table.py: note: In member "add_column" of class "Table":
dvc/utils/table.py:24:5: error: Argument 7 of "add_column" is incompatible with
supertype "Table"; supertype defines the argument type as
"Union[Literal['top'], Literal['middle'], Literal['bottom']]"  [override]
        def add_column(  # pylint: disable=arguments-differ
        ^
dvc/utils/table.py:24:5: note: This violates the Liskov substitution principle
dvc/utils/table.py:24:5: note: See https://mypy.readthedocs.io/en/stable/common_issues.html#incompatible-overrides
dvc/utils/table.py:24:5: error: Argument 8 of "add_column" is incompatible with
supertype "Table"; supertype defines the argument type as
"Union[Literal['fold'], Literal['crop'], Literal['ellipsis'], Literal['ignore']]"
 [override]
        def add_column(  # pylint: disable=arguments-differ
        ^
dvc/utils/table.py:24:5: error: Argument 12 of "add_column" is incompatible
with supertype "Table"; supertype defines the argument type as "Optional[int]"
[override]
        def add_column(  # pylint: disable=arguments-differ
        ^
Found 3 errors in 1 file (checked 128 source files)
```

pylint:

```
************* Module dvc.utils.table
dvc/utils/table.py:24:4: W0237: Parameter 'vertical' has been renamed to 'overflow' in overridden 'Table.add_column' method (arguments-renamed)
dvc/utils/table.py:24:4: W0237: Parameter 'overflow' has been renamed to 'width' in overridden 'Table.add_column' method (arguments-renamed)
dvc/utils/table.py:24:4: W0237: Parameter 'width' has been renamed to 'min_width' in overridden 'Table.add_column' method (arguments-renamed)
dvc/utils/table.py:24:4: W0237: Parameter 'min_width' has been renamed to 'max_width' in overridden 'Table.add_column' method (arguments-renamed)
dvc/utils/table.py:24:4: W0237: Parameter 'max_width' has been renamed to 'ratio' in overridden 'Table.add_column' method (arguments-renamed)
dvc/utils/table.py:24:4: W0237: Parameter 'ratio' has been renamed to 'no_wrap' in overridden 'Table.add_column' method (arguments-renamed)
dvc/utils/table.py:24:4: W0237: Parameter 'no_wrap' has been renamed to 'collapse' in overridden 'Table.add_column' method (arguments-renamed)
```
2022-01-11 00:47:38 +02:00
Ruslan Kuprieiev f64018b75e dvc: separate data and objects
Initial simple separation to get the process of extracting dvc-objects
and dvc-data packages out of dvc.

dvc-objects is for:
 * defining base Object (aka HashFile) and ObjectDB
 * providing tools to work with those objects (check/transfer/etc)
 * etc

dvc-data is for:
 * defining higher level objects (e.g. Tree)
 * bulding objects from the workspace (aka staging)
 * projecting objects back into the workspace (aka checkout)
 * comparing Tree objects (aka diff)
 * defining misc object databases (e.g LocalObjectDB)
 * higher-level transfer (e.g. with Tree indexes)
 * etc

For example, the objects we use in run-cache are based on dvc-objects
and not on dvc-data, as they have absolutely nothing to do with data
management.

There are still some mixups in the code that will be addressed in the
followups.
2022-01-11 00:47:38 +02:00
Gavin Li 92f714e5ca fs: test_links: create destination directory first
`dvc.fs.utils.test_links()` fails with a CacheLinkError if the target `to_path` does not already exist, as is the case when "abc.dvc" exists (referring to a directory object) and we try to run "dvc pull abc/def". To avoid this issue, fully create `to_path` before attempting to create a link in it.
2022-01-08 13:56:51 +02:00
Jon Burdo 634246f81c add tests for Path.parts 2022-01-07 13:26:45 +02:00