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* stage: extract unnecessary methods out of Stage class * stage: change naming of functions * stage: extract dump equal to utils * stage: extract computation of md5 to utils * stage: extract command run related logic in run.py * stage: reorganize run() * stage: boolean cosmetic changes * stage: reorder save() and extract some into func * stage: refactor status() into smaller functions * extract resolve_wdir into utils * merge _changed() and changed() * cosmetic changes * extract dump to utils * extract import updates/sync to imports.py * remove meta from PipelineStage * fix imports, params load * make run_stage a function, fix mocks in tests * use original cmd * rollback imports on decorators * fix ds and cc