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Author SHA1 Message Date
Peter Rowlands 6d783b8d97 exp: always log running experiment name at the start of a run
(cherry picked from commit 89109fafcf)
2023-05-23 16:14:47 +09:00
Peter Rowlands 0e0299e39d exp: support switching to live workspace exp name
(cherry picked from commit aa19e24670)
2023-05-23 16:14:47 +09:00
Peter Rowlands 1652e6af7b exp: drop deprecated get_running_exps()
- replaced with queue.collect_active()

(cherry picked from commit 629223cbc2)
2023-05-23 16:14:47 +09:00
Peter Rowlands e655844712 plots diff: use exp switch_repo context instead of brancher
(cherry picked from commit 96449f157c)
2023-05-23 16:14:47 +09:00
Peter Rowlands 98cd479876 exp: add contextmanager for switching to active tempdir repo
(cherry picked from commit 8cb2646023)
2023-05-23 16:14:47 +09:00
mergify[bot]anddaavoo 45c9b2c9f6 get_random_exp_name: Use custom random generator. (backport #9490) (#9491)
get_random_exp_name: Use custom random generator.

See https://github.com/iterative/dvclive/pull/576

Co-authored-by: Ivan Shcheklein <[email protected]>
(cherry picked from commit eb45cda5d0)

Co-authored-by: daavoo <[email protected]>
2023-05-22 16:04:14 +05:45
mergify[bot]andskshetry a9ae450a64 stage add: introduce --run option (backport #9480) (#9487)
stage add: introduce --run option (#9480)

* stage add: introduce --run option

Part of #5846.

* fix ui message

(cherry picked from commit 1989c0fe98)

Co-authored-by: skshetry <[email protected]>
2023-05-22 12:48:15 +05:45
daavoo 60e161004d exp: Fix --rev args for ls pull and remove.
Closes #9471

(cherry picked from commit 3ddd4b87fc)
2023-05-21 16:32:31 +02:00
21 changed files with 255 additions and 119 deletions
+30 -1
View File
@@ -1,5 +1,6 @@
import argparse
import logging
from contextlib import contextmanager
from itertools import chain, filterfalse
from typing import TYPE_CHECKING, Dict, Iterable, List
@@ -119,8 +120,22 @@ def parse_cmd(commands: List[str]) -> str:
return " ".join(map(quote_argument, commands))
@contextmanager
def _disable_logging(highest_level=logging.CRITICAL):
previous_level = logging.root.manager.disable
logging.disable(highest_level)
try:
yield
finally:
logging.disable(previous_level)
class CmdStageAdd(CmdBase):
def run(self):
from dvc.repo import lock_repo
kwargs = vars(self.args)
kwargs.update(
{
@@ -128,7 +143,15 @@ class CmdStageAdd(CmdBase):
"params": parse_params(self.args.params),
}
)
self.repo.stage.add(**kwargs)
with self.repo.scm_context, lock_repo(self.repo):
with _disable_logging(logging.INFO):
stage = self.repo.stage.add(**kwargs)
logger.info("Added stage %r in %r", stage.addressing, stage.relpath)
if self.args.run:
stage.run()
stage.dump(update_pipeline=False)
return 0
@@ -257,6 +280,12 @@ def _add_common_args(parser):
"This doesn't affect any DVC operations."
),
)
parser.add_argument(
"--run",
action="store_true",
default=False,
help="Execute the stage after generating it.",
)
parser.add_argument(
"command",
nargs=argparse.REMAINDER,
-11
View File
@@ -449,17 +449,6 @@ class Experiments:
result[rev] = name
return result
def get_running_exps(self, fetch_refs: bool = True) -> Dict[str, Dict]:
"""Return info for running experiments."""
result = {}
for queue in (
self.workspace_queue,
self.tempdir_queue,
self.celery_queue,
):
result.update(queue.get_running_exps(fetch_refs))
return result
def apply(self, *args, **kwargs):
from dvc.repo.experiments.apply import apply
+47
View File
@@ -0,0 +1,47 @@
from contextlib import ExitStack, contextmanager
from typing import TYPE_CHECKING, Iterator, Tuple
from dvc.repo.experiments.exceptions import InvalidExpRevError
from dvc.scm import RevError
if TYPE_CHECKING:
from dvc.repo import Repo
@contextmanager
def switch_repo(
repo: "Repo",
rev: str,
) -> Iterator[Tuple["Repo", str]]:
"""Return a repo instance (brancher) switched to rev.
If rev is the name of a running experiment, the returned instance will be
the live repo wherever the experiment is running.
NOTE: This will not resolve git SHA's that only exist in queued exp workspaces
(it will only match queued exp names).
"""
try:
with repo.switch(rev):
yield repo, rev
return
except RevError as exc:
orig_exc = exc
exps = repo.experiments
if rev == exps.workspace_queue.get_running_exp():
yield repo, "workspace"
return
for queue in (exps.tempdir_queue, exps.celery_queue):
try:
active_repo = queue.active_repo(rev)
except InvalidExpRevError:
continue
stack = ExitStack()
stack.enter_context(active_repo)
stack.enter_context(active_repo.switch("workspace"))
with stack:
yield active_repo, rev
return
raise orig_exc
+7
View File
@@ -114,3 +114,10 @@ class UnresolvedRunningExpNamesError(UnresolvedExpNamesError):
class ExpQueueEmptyError(DvcException):
pass
class ExpNotStartedError(DvcException):
def __init__(self, name: str):
super().__init__(
f"Queued experiment '{name}' exists but has not started running yet"
)
+3
View File
@@ -497,6 +497,9 @@ class BaseExecutor(ABC):
exp_ref: Optional["ExpRefInfo"] = None
repro_force: bool = False
if info.name:
ui.write(f"Reproducing experiment '{info.name}'")
with cls._repro_dvc(
info,
infofile,
+6 -3
View File
@@ -1,6 +1,6 @@
import logging
from collections import defaultdict
from typing import Optional
from typing import List, Optional, Union
from dvc.repo import locked
from dvc.repo.scm_context import scm_context
@@ -15,14 +15,17 @@ logger = logging.getLogger(__name__)
@scm_context
def ls(
repo,
rev: Optional[str] = None,
rev: Optional[Union[List[str], str]] = None,
all_commits: bool = False,
num: int = 1,
git_remote: Optional[str] = None,
):
rev_set = None
if not all_commits:
revs = iter_revs(repo.scm, [rev or "HEAD"], num)
rev = rev or "HEAD"
if isinstance(rev, str):
rev = [rev]
revs = iter_revs(repo.scm, rev, num)
rev_set = set(revs.keys())
ref_info_dict = exp_refs_by_baseline(repo.scm, rev_set, git_remote)
+4 -2
View File
@@ -23,7 +23,7 @@ def pull( # noqa: C901
git_remote: str,
exp_names: Union[Iterable[str], str],
all_commits=False,
rev: Optional[str] = None,
rev: Optional[Union[List[str], str]] = None,
num=1,
force: bool = False,
pull_cache: bool = False,
@@ -49,7 +49,9 @@ def pull( # noqa: C901
raise UnresolvedExpNamesError(unresolved_exp_names)
if rev:
rev_dict = iter_revs(repo.scm, [rev], num)
if isinstance(rev, str):
rev = [rev]
rev_dict = iter_revs(repo.scm, rev, num)
rev_set = set(rev_dict.keys())
ref_info_dict = exp_refs_by_baseline(repo.scm, rev_set, git_remote)
for _, ref_info_list in ref_info_dict.items():
+23 -8
View File
@@ -729,14 +729,6 @@ class BaseStashQueue(ABC):
message=f"commit: {msg}",
)
@abstractmethod
def get_running_exps(self, fetch_refs: bool = True) -> Dict[str, Dict]:
"""Get the execution info of the currently running experiments
Args:
fetch_ref (bool): fetch completed checkpoints or not.
"""
@abstractmethod
def collect_active_data(
self,
@@ -790,3 +782,26 @@ class BaseStashQueue(ABC):
Returns:
Dict mapping baseline revision to list of queued experiments.
"""
def active_repo(self, name: str) -> "Repo":
"""Return a Repo for the specified active experiment if it exists."""
from dvc.repo import Repo
from dvc.repo.experiments.exceptions import (
ExpNotStartedError,
InvalidExpRevError,
)
from dvc.repo.experiments.executor.base import ExecutorInfo, TaskStatus
for entry in self.iter_active():
if entry.name != name:
continue
infofile = self.get_infofile_path(entry.stash_rev)
executor_info = ExecutorInfo.load_json(infofile)
if executor_info.status < TaskStatus.RUNNING:
raise ExpNotStartedError(name)
dvc_root = os.path.join(executor_info.root_dir, executor_info.dvc_dir)
try:
return Repo(dvc_root)
except (FileNotFoundError, DvcException) as exc:
raise InvalidExpRevError(name) from exc
raise InvalidExpRevError(name)
-13
View File
@@ -489,19 +489,6 @@ class LocalCeleryQueue(BaseStashQueue):
return celery_remove(self, *args, **kwargs)
def get_running_exps(self, fetch_refs: bool = True) -> Dict[str, Dict]:
"""Get the execution info of the currently running experiments
Args:
fetch_ref (bool): fetch completed checkpoints or not.
"""
result: Dict[str, Dict] = {}
for entry in self.iter_active():
result.update(
fetch_running_exp_from_temp_dir(self, entry.stash_rev, fetch_refs)
)
return result
def get_ref_and_entry_by_names(
self,
exp_names: Union[str, List[str]],
-8
View File
@@ -144,14 +144,6 @@ class TempDirQueue(WorkspaceQueue):
) -> Dict[str, str]:
return BaseStashQueue.collect_executor(exp, executor, exec_result)
def get_running_exps(self, fetch_refs: bool = True) -> Dict[str, Dict]:
result: Dict[str, Dict] = {}
for entry in self.iter_active():
result.update(
fetch_running_exp_from_temp_dir(self, entry.stash_rev, fetch_refs)
)
return result
def collect_active_data(
self,
baseline_revs: Optional[Collection[str]],
+5 -20
View File
@@ -191,33 +191,18 @@ class WorkspaceQueue(BaseStashQueue):
):
raise NotImplementedError
def get_running_exps(
self,
fetch_refs: bool = True, # noqa: ARG002
) -> Dict[str, Dict]:
def get_running_exp(self) -> Optional[str]:
"""Return the name of the exp running in workspace (if it exists)."""
assert self._EXEC_NAME
result: Dict[str, Dict] = {}
if self._active_pid is None:
return result
return None
infofile = self.get_infofile_path(self._EXEC_NAME)
try:
info = ExecutorInfo.from_dict(load_json(infofile))
except OSError:
return result
if info.status < TaskStatus.FAILED:
# If we are appending to a checkpoint branch in a workspace
# run, show the latest checkpoint as running.
if info.status == TaskStatus.SUCCESS:
return result
last_rev = self.scm.get_ref(EXEC_BRANCH)
if last_rev:
result[last_rev] = info.asdict()
else:
result[self._EXEC_NAME] = info.asdict()
return result
return None
return info.name
def collect_active_data(
self,
+5 -3
View File
@@ -24,7 +24,7 @@ logger = logging.getLogger(__name__)
def remove( # noqa: C901, PLR0912
repo: "Repo",
exp_names: Union[None, str, List[str]] = None,
rev: Optional[str] = None,
rev: Optional[Union[List[str], str]] = None,
all_commits: bool = False,
num: int = 1,
queue: bool = False,
@@ -60,6 +60,8 @@ def remove( # noqa: C901, PLR0912
if remained:
raise UnresolvedExpNamesError(remained, git_remote=git_remote)
elif rev:
if isinstance(rev, str):
rev = [rev]
exp_ref_dict = _resolve_exp_by_baseline(repo, rev, num, git_remote)
removed.extend(exp_ref_dict.keys())
exp_ref_list.extend(exp_ref_dict.values())
@@ -85,14 +87,14 @@ def remove( # noqa: C901, PLR0912
def _resolve_exp_by_baseline(
repo: "Repo",
rev: str,
rev: List[str],
num: int,
git_remote: Optional[str] = None,
) -> Dict[str, "ExpRefInfo"]:
assert isinstance(repo.scm, Git)
commit_ref_dict: Dict[str, "ExpRefInfo"] = {}
rev_dict = iter_revs(repo.scm, [rev], num)
rev_dict = iter_revs(repo.scm, rev, num)
rev_set = set(rev_dict.keys())
ref_info_dict = exp_refs_by_baseline(repo.scm, rev_set, git_remote)
for _, ref_info_list in ref_info_dict.items():
File diff suppressed because one or more lines are too long
+33 -26
View File
@@ -121,51 +121,58 @@ class Plots:
}
"""
from dvc.repo.experiments.brancher import switch_repo
from dvc.utils.collections import ensure_list
targets = ensure_list(targets)
targets = [self.repo.dvcfs.from_os_path(target) for target in targets]
for rev in self.repo.brancher(revs=revs):
# .brancher() adds unwanted workspace
if revs is not None and rev not in revs:
continue
rev = rev or "workspace"
res: Dict = {}
definitions = _collect_definitions(
self.repo,
targets=targets,
revision=rev,
onerror=onerror,
props=props,
)
if definitions:
res[rev] = {"definitions": definitions}
data_targets = _get_data_targets(definitions)
res[rev]["sources"] = self._collect_data_sources(
targets=data_targets,
recursive=recursive,
props=props,
if revs is None:
revs = ["workspace"]
else:
revs = list(revs)
if "workspace" in revs:
# reorder revs to match repo.brancher ordering
revs.remove("workspace")
revs = ["workspace"] + revs
for rev in revs:
with switch_repo(self.repo, rev) as (repo, _):
res: Dict = {}
definitions = _collect_definitions(
repo,
targets=targets,
revision=rev,
onerror=onerror,
props=props,
)
yield res
if definitions:
res[rev] = {"definitions": definitions}
data_targets = _get_data_targets(definitions)
res[rev]["sources"] = self._collect_data_sources(
repo,
targets=data_targets,
recursive=recursive,
props=props,
onerror=onerror,
)
yield res
@error_handler
def _collect_data_sources(
self,
repo: "Repo",
targets: Optional[List[str]] = None,
recursive: bool = False,
props: Optional[Dict] = None,
onerror: Optional[Callable] = None,
):
fs = self.repo.dvcfs
fs = repo.dvcfs
props = props or {}
plots = _collect_plots(self.repo, targets, recursive)
plots = _collect_plots(repo, targets, recursive)
res: Dict[str, Any] = {}
for fs_path, rev_props in plots.items():
joined_props = {**rev_props, **props}
+9 -10
View File
@@ -122,16 +122,15 @@ class StageLoad:
force=force,
**stage_data,
)
with self.repo.scm_context:
stage.dump(update_lock=update_lock)
try:
stage.ignore_outs()
except FileNotFoundError as exc:
ui.warn(
f"Could not create .gitignore entry in {exc.filename}."
" DVC will attempt to create .gitignore entry again when"
" the stage is run."
)
stage.dump(update_lock=update_lock)
try:
stage.ignore_outs()
except FileNotFoundError as exc:
ui.warn(
f"Could not create .gitignore entry in {exc.filename}."
" DVC will attempt to create .gitignore entry again when"
" the stage is run."
)
return stage
+1 -1
View File
@@ -303,5 +303,5 @@ ignore-names = ["M", "SCM"]
max-args = 10
[tool.bandit]
exclude_dirs = ["tests", "scripts"]
exclude_dirs = ["tests", "scripts", "dvc/repo/experiments/utils.py"]
skips = ["B101"]
@@ -369,6 +369,12 @@ def test_list(tmp_dir, scm, dvc, exp_stage):
baseline_a[:7]: {ref_info_a.name, ref_info_b.name}
}
exp_list = dvc.experiments.ls(rev=[baseline_a, scm.get_rev()])
assert {key: set(val) for key, val in exp_list.items()} == {
baseline_a[:7]: {ref_info_a.name, ref_info_b.name},
"master": {ref_info_c.name},
}
exp_list = dvc.experiments.ls(all_commits=True)
assert {key: set(val) for key, val in exp_list.items()} == {
baseline_a[:7]: {ref_info_a.name, ref_info_b.name},
+24
View File
@@ -251,6 +251,30 @@ def test_pull_args(tmp_dir, scm, dvc, git_downstream, exp_stage, all_, rev, resu
assert git_downstream.tmp_dir.scm.get_ref(str(ref_info3)) == result3
def test_pull_multi_rev(tmp_dir, scm, dvc, git_downstream, exp_stage):
baseline = scm.get_rev()
results = dvc.experiments.run(exp_stage.addressing, params=["foo=1"])
exp1 = first(results)
ref_info1 = first(exp_refs_by_rev(scm, exp1))
results = dvc.experiments.run(exp_stage.addressing, params=["foo=2"])
exp2 = first(results)
ref_info2 = first(exp_refs_by_rev(scm, exp2))
scm.commit("new_baseline")
results = dvc.experiments.run(exp_stage.addressing, params=["foo=3"])
exp3 = first(results)
ref_info3 = first(exp_refs_by_rev(scm, exp3))
downstream_exp = git_downstream.tmp_dir.dvc.experiments
git_downstream.tmp_dir.scm.fetch_refspecs(str(tmp_dir), ["master:master"])
downstream_exp.pull(git_downstream.remote, [], rev=[baseline, scm.get_rev()])
assert git_downstream.tmp_dir.scm.get_ref(str(ref_info1)) == exp1
assert git_downstream.tmp_dir.scm.get_ref(str(ref_info2)) == exp2
assert git_downstream.tmp_dir.scm.get_ref(str(ref_info3)) == exp3
def test_pull_diverged(tmp_dir, scm, dvc, git_downstream, exp_stage):
git_downstream.tmp_dir.scm_gen("foo", "foo", commit="init")
remote_rev = git_downstream.tmp_dir.scm.get_rev()
+23
View File
@@ -156,3 +156,26 @@ def test_remove_experiments_by_rev(tmp_dir, scm, dvc, exp_stage):
assert "queue2" in queue_revs
assert scm.get_ref(new_exp_ref) is not None
assert "queue4" in queue_revs
def test_remove_multi_rev(tmp_dir, scm, dvc, exp_stage):
baseline = scm.get_rev()
results = dvc.experiments.run(exp_stage.addressing, params=["foo=1"])
baseline_exp_ref = first(exp_refs_by_rev(scm, first(results)))
dvc.experiments.run(
exp_stage.addressing, params=["foo=2"], queue=True, name="queue2"
)
scm.commit("new_baseline")
results = dvc.experiments.run(exp_stage.addressing, params=["foo=3"])
new_exp_ref = first(exp_refs_by_rev(scm, first(results)))
assert set(dvc.experiments.remove(rev=[baseline, scm.get_rev()])) == {
baseline_exp_ref.name,
new_exp_ref.name,
}
assert scm.get_ref(str(baseline_exp_ref)) is None
assert scm.get_ref(str(new_exp_ref)) is None
+12 -11
View File
@@ -2,18 +2,19 @@ from funcy import first
def test_generate_random_exp_name(tmp_dir, dvc, scm, exp_stage, mocker):
mocked_generator = mocker.MagicMock()
mocked_generator.choice.side_effect = [
0,
0,
0,
0,
1,
1,
0,
0,
]
mocker.patch(
"dvc.repo.experiments.utils.random.choice",
side_effect=[
0,
0,
0,
0,
1,
1,
0,
0,
],
"dvc.repo.experiments.utils.random.Random", return_value=mocked_generator
)
ref = first(dvc.experiments.run(exp_stage.addressing, params=["foo=1"]))
+12
View File
@@ -86,3 +86,15 @@ def test_stage_add(mocker, dvc, command, parsed_command):
cmd=parsed_command,
force=True,
)
def test_stage_add_and_run(mocker, dvc):
cli_args = parse_args(["stage", "add", "--run", "-n", "foo", "-o", "foo", "cmd"])
cmd = cli_args.func(cli_args)
add_mock = mocker.patch.object(cmd.repo.stage, "add")
assert cmd.run() == 0
assert called_once_with_subset(add_mock, name="foo", outs=["foo"], cmd="cmd")
add_mock.return_value.run.assert_called_once()
add_mock.return_value.dump.assert_called_once_with(update_pipeline=False)