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283 Commits
Author SHA1 Message Date
Ruslan Kuprieiev 064fbfd0d5 webdav: fix unstrip_protocol 2021-12-07 23:59:12 +02:00
Ruslan Kuprieiev e8e1c76504 fs: path: use ntpath/posixpath
This is less error-prone than implementing these methods ourselves.
2021-12-07 22:58:48 +02:00
Saugat Pachhai (सौगात) 532e115782 exp init: unhide from dvc exp --help 2021-12-07 09:55:40 +05:45
Saugat Pachhai 189f4a0216 Update dvc/repo/experiments/init.py 2021-12-07 09:55:03 +05:45
pre-commit-ci[bot] 0bc101964e [pre-commit.ci] auto fixes from pre-commit.com hooks
for more information, see https://pre-commit.ci
2021-12-07 09:55:03 +05:45
Saugat Pachhai (सौगात) 3319808ed2 exp init: use shortlinks for doclinks 2021-12-07 09:55:03 +05:45
Saugat Pachhai (सौगात) cd37ebca37 exp init: minor refactoring 2021-12-07 08:40:46 +05:45
dberenbaum 4385720fab exp init: update tests 2021-12-07 07:34:31 +05:45
dberenbaum d52123f850 exp init: change default stage name to train 2021-12-07 07:34:31 +05:45
pre-commit-ci[bot] 9803db6a64 [pre-commit.ci] auto fixes from pre-commit.com hooks
for more information, see https://pre-commit.ci
2021-12-07 06:17:02 +05:45
pre-commit-ci[bot] bcb1ba0ea8 [pre-commit.ci] pre-commit autoupdate
updates:
- [github.com/ambv/black: 21.11b1 → 21.12b0](https://github.com/ambv/black/compare/21.11b1...21.12b0)
2021-12-07 06:17:02 +05:45
Saugat Pachhai (सौगात) 389fd48b5a exp init: change type to --type=live to --type=dl 2021-12-07 05:56:23 +05:45
Ruslan Kuprieiev 2ecbb16769 setup: bump scmrepo 2021-12-06 19:27:16 +02:00
Ruslan Kuprieiev ec73300782 odb: make some listing methods private
These are not used anywhere outside of odb, so we can make them private
to reduce the scope for the upcoming refactoring.
2021-12-06 14:10:50 +02:00
Paweł Redzyński 954ac6ab03 plots: roll back templates in packages change
Fixes: #6911
Reverts: a1b146669c
2021-12-06 09:55:13 +02:00
dependabot[bot] 1020b06a16 build(deps-dev): Bump pylint from 2.12.1 to 2.12.2
Bumps [pylint](https://github.com/PyCQA/pylint) from 2.12.1 to 2.12.2.
- [Release notes](https://github.com/PyCQA/pylint/releases)
- [Changelog](https://github.com/PyCQA/pylint/blob/main/ChangeLog)
- [Commits](https://github.com/PyCQA/pylint/compare/v2.12.1...v2.12.2)

---
updated-dependencies:
- dependency-name: pylint
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
2021-12-06 09:47:25 +02:00
karajan1001 9cf1f45e71 proc: implement cleanup/removal (#7063)
fix: #7063
Add `cleanup` and `removal` function to ProcessManager
2021-12-06 15:25:15 +09:00
dependabot[bot] b67e75c691 build(deps-dev): Bump requests-kerberos from 0.13.0 to 0.14.0
Bumps [requests-kerberos](https://github.com/requests/requests-kerberos) from 0.13.0 to 0.14.0.
- [Release notes](https://github.com/requests/requests-kerberos/releases)
- [Changelog](https://github.com/requests/requests-kerberos/blob/master/HISTORY.rst)
- [Commits](https://github.com/requests/requests-kerberos/compare/v0.13.0...v0.14.0)

---
updated-dependencies:
- dependency-name: requests-kerberos
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
2021-12-06 11:38:43 +08:00
David de la Iglesia Castro 728731d4d7 ui: Add open_browser.
Use `webbrowser.open` and relpath for WSL plattform.
2021-12-05 15:44:13 +02:00
Paweł Redzyński 6723a34bda render: image: make html less ugly 2021-12-05 15:42:07 +02:00
karajan1001 eb26b9a78d ci: fix ci failure
We didn't mock `os.kill` in `test_dead_process` and the pid it
kills might coincidentlly be the same with some real process.

1. Add a mocker to mock out `os.kill` in `test_dead_process`.
2. Use reset_mock to replace setting it again.
2021-12-04 19:40:57 +09:00
Ruslan Kuprieiev 42641ddd20 gha: remove remote leftovers
Followup for #7087
2021-12-03 23:11:22 +02:00
Ruslan Kuprieiev b6f2a8e653 tests: remove redundant remote tests
With introduction of https://github.com/iterative/dvc-plugins,
all important tests are being ran there, so there is no need
for dvc repo to run them again.

This PR also removes some redundant/broken remote tests.
2021-12-03 22:45:41 +02:00
Ruslan Kuprieiev 024f06d672 gdrive: fix path operations 2021-12-02 18:52:18 +02:00
Ruslan Kuprieiev 8dd3b28729 gdrive: fix typo 2021-12-02 17:22:47 +02:00
Ruslan Kuprieiev d4178c080b gdrive: don't forget bucket when generating a url 2021-12-02 17:21:51 +02:00
Ruslan Kuprieiev 302f5b07f6 gdrive: fix typo 2021-12-02 17:19:12 +02:00
karajan1001andPeter Rowlands 7d68863ba2 proc: implement process signaling(#7062)
fix: #7062
1. Add `send_signal`, `kill`, `terminate` to processManager.
2. Add tests for each of them.

Co-authored-by: Peter Rowlands (변기호) <[email protected]>
2021-12-02 16:39:41 +09:00
Ruslan Kuprieiev 09f48a5aaa tests: introduce dvc.testing
This is a very early version of test utils for dvc plugins. This module
consists of existing tests with minimal changes and is going to evolve
a lot as our plugins are getting filled in and pytest-test-utils matures.
2021-12-02 09:08:40 +02:00
dependabot[bot] 004e15c2c0 build(deps-dev): Bump types-requests from 2.26.0 to 2.26.1
Bumps [types-requests](https://github.com/python/typeshed) from 2.26.0 to 2.26.1.
- [Release notes](https://github.com/python/typeshed/releases)
- [Commits](https://github.com/python/typeshed/commits)

---
updated-dependencies:
- dependency-name: types-requests
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
2021-11-29 20:24:26 +05:45
dependabot[bot] 382edfc382 build(deps-dev): Bump dvclive[image] from 0.4.3 to 0.4.5
Bumps [dvclive[image]](https://github.com/iterative/dvclive) from 0.4.3 to 0.4.5.
- [Release notes](https://github.com/iterative/dvclive/releases)
- [Commits](https://github.com/iterative/dvclive/compare/0.4.3...0.4.5)

---
updated-dependencies:
- dependency-name: dvclive[image]
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
2021-11-29 17:17:46 +05:45
Peter Rowlands dd535f617b proc: initial ProcessManager skeleton 2021-11-29 07:00:38 +02:00
Peter Rowlands 15eb326188 proc: initial ManagedProcess implementation
- supports running (backgrounded) processes with redirected output
2021-11-29 07:00:38 +02:00
dependabot[bot] 34f402659c build(deps): Bump scmrepo from 0.0.1 to 0.0.2
Bumps [scmrepo](https://github.com/iterative/scmrepo) from 0.0.1 to 0.0.2.
- [Release notes](https://github.com/iterative/scmrepo/releases)
- [Commits](https://github.com/iterative/scmrepo/compare/0.0.1...0.0.2)

---
updated-dependencies:
- dependency-name: scmrepo
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
2021-11-26 09:36:57 +05:45
dependabot[bot] 3e808b6f37 build(deps-dev): Bump pylint from 2.11.1 to 2.12.1
Bumps [pylint](https://github.com/PyCQA/pylint) from 2.11.1 to 2.12.1.
- [Release notes](https://github.com/PyCQA/pylint/releases)
- [Changelog](https://github.com/PyCQA/pylint/blob/main/ChangeLog)
- [Commits](https://github.com/PyCQA/pylint/compare/v2.11.1...v2.12.1)

---
updated-dependencies:
- dependency-name: pylint
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
2021-11-26 09:36:25 +05:45
Saugat Pachhai (सौगात) ea52ab2260 remove dvc.scm and dvc.fs.git module; rename dvc.fs.scm to dvc.fs.git 2021-11-25 19:09:58 +02:00
Paweł Redzyński 57c6b1036f gha: allow builds for new 3.9 versions
Closes: #6975
2021-11-25 14:40:40 +02:00
Saugat Pachhai 950b576cbd packages: build binary pkgs with Python 3.9 2021-11-25 14:40:11 +02:00
Saugat Pachhai (सौगात) 2cbe25ac90 scm: move warning on unsupported index to scmcontext
Also makes `Repo.init` avoid using `scm.add` directly.
2021-11-25 12:29:50 +02:00
Saugat Pachhai (सौगात) c9cd4a8c51 scm: remove dvc specific message; add client kwarg
This commit removes dvc specific message hardcoded in
scm.detach_head. Now that we are decoupling scm, we are
adding `client=` kwarg to be set by the caller.
2021-11-25 12:05:25 +02:00
Saugat Pachhai (सौगात) 95c726b297 fs.git: refactor GitFileSystem to be fsspec compliant
Also adds a wrapper for DVC to use as GitFileSystem in dvc.fs.scm.
This is temporary, and will be renamed back to dvc.fs.git after the
split.

Note that this filesystem is not fully compliant, it's only
meant to be compatible with our previous implementation.
2021-11-25 08:32:20 +05:45
Saugat Pachhai (सौगात) 281b97c8ef scm: remove dependency from dvc's utils in scm
This removes dependency from dvc.utils and dvc.types from DVC.
Some utils like fix_env, is_binary have been reimplemented.
Regarding fix_env and is_binary, I think eventually this
should be a responsibility of DVC itself to set.

relpath implementation in DVC also works with paths in
different drives in Windows. I have changed this to use
os.path.relpath for now.
2021-11-24 17:00:12 +02:00
Saugat Pachhai (सौगात) a282e0e48c scm: restructure scm
Makes it easier to decouple, we'd only need to rename
dvc/scm/__init__.py to dvc/scm.py.
2021-11-24 11:46:40 +05:45
Saugat Pachhai (सौगात) 48581715b6 scm: remove exp related behaviours from scm.resolve_rev 2021-11-24 11:39:39 +05:45
dependabot[bot] 13ca959e98 build(deps): Bump actions/cache from 2.1.6 to 2.1.7
Bumps [actions/cache](https://github.com/actions/cache) from 2.1.6 to 2.1.7.
- [Release notes](https://github.com/actions/cache/releases)
- [Commits](https://github.com/actions/cache/compare/v2.1.6...v2.1.7)

---
updated-dependencies:
- dependency-name: actions/cache
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
2021-11-24 08:47:13 +05:45
Saugat Pachhai (सौगात) a0f4e12fb4 scm: unified progress reporting in a structured way
This adds a support for reporting progress from Git in a structured
format. The gitpython already provides somewhat structured progress
reporting, dulwich on the other hand only provides git-like line
messages.

As gitpython uses git binary, it already parse this line format
in a structured way. This PR makes dulwich use the same machinery
to unify progress reporting for both dulwich and gitpython python.

This does add a dependency on gitpython even on dulwich backend,
so I am iffy if we should do this.
The alternative is to translate gitpython's progress reports to
string, and just use string messages as progress reports on both
dulwich and gitpython.
2021-11-23 19:50:12 +02:00
Saugat Pachhai (सौगात) d95dd27773 scm: map internal SCMError to DVC's exception type 2021-11-23 19:21:51 +02:00
Saugat Pachhai (सौगात) f76ef84c88 exceptions: migrate other scm exceptions to internal 2021-11-23 19:21:51 +02:00
Saugat Pachhai (सौगात) f2f4227656 exceptions: migrate RevError 2021-11-23 19:21:51 +02:00
Saugat Pachhai (सौगात) 7ca8fbbc82 exceptions: migrate CloneError 2021-11-23 19:21:51 +02:00
Saugat Pachhai (सौगात) 8ec1ff44de exceptions: move AuthError and InvalidRemote errors 2021-11-23 19:21:51 +02:00
Saugat Pachhai (सौगात) c19a11152a scm: move FileNotInRepoError and MergeConflictError to scm.exceptions 2021-11-23 19:21:51 +02:00
Saugat Pachhai (सौगात) cab60b54f8 live: import webbrowser lazily; only patch webbrowser.open 2021-11-23 22:08:21 +05:45
David de la Iglesia Castro fc7caa487f tests: Patch webbrowser.open on session level
Closes #7014
2021-11-23 22:08:21 +05:45
Saugat Pachhai (सौगात) 568abb3e28 scm: remove dependency from DvcException 2021-11-23 13:19:41 +02:00
Kwon-Young ChoiandPeter Rowlands 3e7cff3e35 exp: respect repo hardlink_lock config for the exp scm lock
- Will fix #7029

Co-authored-by: Peter Rowlands (변기호) <[email protected]>
2021-11-23 19:51:42 +09:00
Saugat Pachhai (सौगात) 7dc5420548 metrics/params diff: catch NoSCMError instead of a broad exception
instead of catching broad exception, NoSCMError should work here.
2021-11-23 13:21:15 +05:45
pre-commit-ci[bot] 644e9ede92 [pre-commit.ci] pre-commit autoupdate
updates:
- [github.com/ambv/black: 21.10b0 → 21.11b1](https://github.com/ambv/black/compare/21.10b0...21.11b1)
2021-11-22 21:36:19 +02:00
Paweł Redzyński a9512e8585 plots: collect: return callable instead of data
Related to: #6923, iterative/viewer#2657
2021-11-22 21:31:20 +02:00
Saugat Pachhai (सौगात) 00e53c5c32 tests: fix black 2021-11-22 17:33:12 +05:45
Saugat Pachhai (सौगात) 0aaf96bce4 exp init: show 'n to omit' on --explicit mode 2021-11-22 17:20:16 +05:45
Saugat Pachhai (सौगात) e07b99ed33 tests: increase timeout to 2 second for prompts test 2021-11-22 15:10:55 +05:45
Saugat Pachhai (सौगात) 7bc906011f tests: timeout only on functions, excluding tests fixtures
Sometimes, `tmp_dir` fixtures take longer than a second. Using `func_only`
makes it only consider duration of test function run, excluding fixtures
duration.
2021-11-22 15:10:55 +05:45
Saugat Pachhai (सौगात) b84227db89 scm: remove ignore list 2021-11-22 07:16:54 +02:00
David de la Iglesia Castro 318b269ad1 live: Call webbrowser.open.
Use `funcy.once_per_args` decorator to prevent opening the html multiple times if user closes first time.

Closes iterative/dvclive#180
2021-11-22 03:35:23 +02:00
Ruslan Kuprieiev 1176b6d875 Update setup.cfg 2021-11-22 03:31:23 +02:00
dependabot[bot] ee6539292b build(deps): Bump adlfs from 2021.9.1 to 2021.10.0
Bumps [adlfs](https://github.com/dask/adlfs) from 2021.9.1 to 2021.10.0.
- [Release notes](https://github.com/dask/adlfs/releases)
- [Changelog](https://github.com/dask/adlfs/blob/master/CHANGELOG.md)
- [Commits](https://github.com/dask/adlfs/compare/2021.09.1...2021.10.0)

---
updated-dependencies:
- dependency-name: adlfs
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
2021-11-22 03:31:23 +02:00
Saugat Pachhai (सौगात) bf313d92aa exp init: timeout prompts' test
The `exp init` tests may just keep waiting on the prompts blocking tests.
The blocking of prompts is likely a failure in tests setup or a bug
in the implementation. It's hard to find out these failures or avoid it.
If they take longer than 1 second, they most likely have failed as
most of test takes 0.1 second at max.
2021-11-22 03:27:16 +02:00
Saugat Pachhai (सौगात) 46289182d2 tests: run on Windows with Python 3.10
pygit2 wheels should be now available.
Had to skip pytest-docker for Windows + Python 3.10 due to
a dependency issue with it's dependency, see:
https://github.com/docker/docker-py/issues/2902.
2021-11-20 18:52:31 +02:00
Saugat Pachhai (सौगात) cb941a836d tests: cover exp init 2021-11-19 18:58:23 +05:45
Gustavo José de Sousa a70b3087b4 build: bump sshfs from 2021.8.1 to 2021.11.2
This version uses bumps asyncssh to a version that supports ProxyJump.
2021-11-18 23:58:57 +02:00
Ruslan Kuprieiev c9dd137426 fs: BaseFileSystem -> FileSystem
Following fsspec conventions and new object conventions.
2021-11-18 19:58:23 +02:00
Saugat Pachhai (सौगात) 93e6526907 scm: split tracking of to-be git-ignored/git-staged into SCMContext 2021-11-18 15:34:45 +02:00
dependabot[bot] 230eb7087d build: bump google-cloud-storage from 1.42.3 to 1.43.0
Bumps [google-cloud-storage](https://github.com/googleapis/python-storage) from 1.42.3 to 1.43.0.
- [Release notes](https://github.com/googleapis/python-storage/releases)
- [Changelog](https://github.com/googleapis/python-storage/blob/main/CHANGELOG.md)
- [Commits](https://github.com/googleapis/python-storage/compare/v1.42.3...v1.43.0)

---
updated-dependencies:
- dependency-name: google-cloud-storage
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
2021-11-18 16:36:00 +05:45
Saugat Pachhai (सौगात) c3b91e5f85 exp init: interactive mode refactor and simplification 2021-11-18 16:06:52 +05:45
Saugat Pachhai (सौगात) eac030598c ui.prompt: move prompts from exp init to ui.prompt
Some fixes along the way to make it more generic, but it still has
lots of features tied with exp init.
2021-11-18 13:22:45 +05:45
karajan1001 068b8371aa Machine: table output for machine status(#6892)
Change the output format of `dvc machine status` command to tables for a
better readability.
2021-11-18 11:22:13 +08:00
karajan1001 888b6392bb Machine:remove field name in config(#6892)
Because our machine name now is the key value of the machine config
dict. And the machine config value will been overwritten by it when the
config is loaded. We can remove the field `name` from the config.
2021-11-18 11:22:13 +08:00
karajan1001 b24a31b834 Machine: use table for list outputs(#6892)
fix: #6892

Current output of machine list is quite urgly, it is originaly used to
show configurations. In this PR, we use a new table format for it.
2021-11-18 11:22:13 +08:00
karajan1001 45553c5b30 TabularData: add a new how arg to dropna(#6892)
Borrowed this idea from pandas api. Current dropna methods will drop a
column or row if any data is missing. But it is also quite useful to
drop those columns or rows only if all of its elements are missing. This
is mostly used for pruning a table.
2021-11-18 11:22:13 +08:00
Peter Rowlands 28f57933db dulwich: flush stdin channel on asyncssh vendor write 2021-11-17 12:48:34 +02:00
Peter Rowlands 25dca0b665 dulwich: workaround github SSH server in asyncssh vendor
- allow mismatched RSA signature algo names in initial
  SSH_MSG_USERAUTH_PK_OK response
- unit test overridden asyncssh publickey auth compatibility with
  github ssh server
2021-11-17 12:48:34 +02:00
Peter Rowlands 45c4e1998d dulwich: fallback to default client config in asyncssh vendor
- vendor should use ssh-agent or default IdentityFile(s) when no SSH key
  has been provided by the user
- encrypted (fallback) keys will always be passed to ssh-agent
2021-11-17 12:48:34 +02:00
karajan1001 eea67a6396 machine:remove help text for irrelevant commands (#6940)
fix: #6940

`--global/system/project/local` help message are in some irrelevant
command `status`, `ssh`, `create`, `destroy`. These commands are more
related to running instances rather than `machine config`, level
options didn't work for them.

1. Remove `--global/system/project/local` options in `status`, `ssh`,
   `create`, `destroy`.
2. Add a test for it.
3. Correct a typo error.
2021-11-17 16:25:48 +08:00
karajan1001andDave Berenbaum f43c04f935 Make machine status name optional
fix: #6838
1. make machine status name optional.
2. show all machine status if no name provide.
3. UI changes for this cmd.
4. add a new test for it.

Co-authored-by: Dave Berenbaum <[email protected]>
2021-11-17 15:44:36 +08:00
dependabot[bot] 3486435a7f build: bump filelock from 3.3.2 to 3.4.0
Bumps [filelock](https://github.com/tox-dev/py-filelock) from 3.3.2 to 3.4.0.
- [Release notes](https://github.com/tox-dev/py-filelock/releases)
- [Changelog](https://github.com/tox-dev/py-filelock/blob/main/docs/changelog.rst)
- [Commits](https://github.com/tox-dev/py-filelock/compare/3.3.2...3.4.0)

---
updated-dependencies:
- dependency-name: filelock
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
2021-11-17 14:04:17 +08:00
Paweł Redzyński e0fd0790fc plots: special chars handling for vega plots paths
Fixes: #6894
2021-11-17 01:57:35 +02:00
dberenbaum f99d3cda57 scm: hint to autostage 2021-11-16 18:01:18 +02:00
pre-commit-ci[bot] 003461f9a2 [pre-commit.ci] pre-commit autoupdate
updates:
- [github.com/timothycrosley/isort: 5.9.3 → 5.10.1](https://github.com/timothycrosley/isort/compare/5.9.3...5.10.1)
2021-11-16 07:55:56 +05:45
Ruslan Kuprieiev 88660f6a66 dvc: use transfer in checkout/doctor/odb
All three of those use more or less the same logic for testing different
link types and maybe then using them. So now instead of having 3
implementations, we'll have just one.

Filesystem `transfer` now will not try to catch particular errno's, but
instead will just ignore any OSError and move down to the next link type
to try out, and if the last one fails - it will raise the last exception,
so if it is a common problem - we'll be able to see it.

This patch also removes `odb.confirmed_cache_type`, as it was caching
link type that is not really a cache-level thing, but rather a checkout thing,
that should only be cached for particular objects we are linking, as multiple
objects could be linked to different filesystems from the same odb (e.g.
external local output on hdd and local data on your ssd).

Next step here will be to introduce metadata diff, so that we can get rid of
temporary Link wrapper and introduce Transfer and corresponding transfer
config, that will know what links to use and could have some other things
like callbacks, so we don't continue passing dozens of kwargs along the stack.

Continuing from #6963

Fixes #6980
2021-11-15 22:50:00 +02:00
David de la Iglesia Castro 7df6090a9c params: Use ast.literal_eval for python params.
Add unit tests for `parse_py`

Closes  #6953
2021-11-15 17:52:49 +02:00
Dimitar Todorov fdba79c519 change method override to call super instead of repeating the calls 2021-11-15 17:50:14 +02:00
Димитър Тодоров (Dimitar Todorov)andSaugat Pachhai 2f6b6cc586 Update dvc/fs/http.py
Co-authored-by: Saugat Pachhai <[email protected]>
2021-11-15 17:50:14 +02:00
Dimitar Todorov 0fea622266 push: fix http storage ignoring method setting
Add method overriding the default put_file in http.py
where the upload method is passed to the http implementation.

Fixes: #6694
2021-11-15 17:50:14 +02:00
David de la Iglesia Castro 4a1985d7cd dvc render: Add RENDERERS registry.
Related: #6840, #4455, #6943
2021-11-15 16:37:24 +01:00
David de la Iglesia Castro c8903dc3a6 live: Add test for logging images with dvclive
Closes iterative/dvclive#190
2021-11-15 12:47:02 +01:00
David de la Iglesia Castro 28dd39a1a0 exp diff: Remove --old option.
After #6814 the header of `diff_table` is `a_rev/`b_rev` instead of `Old`/`New` so the name of the option was counterintuitive.

In addition, make `a_rev` show by default, for consistency with output format of other `diff_table` uses (`dvc metrics diff` / `dvc params diff`).
2021-11-12 12:58:12 +02:00
dependabot[bot] ef9d8580cc build: bump types-requests from 2.25.12 to 2.26.0
Bumps [types-requests](https://github.com/python/typeshed) from 2.25.12 to 2.26.0.
- [Release notes](https://github.com/python/typeshed/releases)
- [Commits](https://github.com/python/typeshed/commits)

---
updated-dependencies:
- dependency-name: types-requests
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
2021-11-12 12:40:38 +02:00
dependabot[bot] 1af23f32b7 build: bump pyinstaller from 4.6 to 4.7
Bumps [pyinstaller](https://github.com/pyinstaller/pyinstaller) from 4.6 to 4.7.
- [Release notes](https://github.com/pyinstaller/pyinstaller/releases)
- [Changelog](https://github.com/pyinstaller/pyinstaller/blob/v4.7/doc/CHANGES.rst)
- [Commits](https://github.com/pyinstaller/pyinstaller/compare/v4.6...v4.7)

---
updated-dependencies:
- dependency-name: pyinstaller
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
2021-11-12 12:40:27 +02:00
Saugat Pachhai (सौगात) 7b488887b4 exp init: suppress plots if live is selected as a stage type 2021-11-12 11:25:39 +05:45
Saugat Pachhai (सौगात) 8262dbd37c exp init: hide metrics/plots from worktree on --type=live 2021-11-12 11:21:58 +05:45
Ruslan Kuprieiev 264d78b637 ostage: don't forget to convert https etags
Fixes #6966
2021-11-12 00:54:44 +02:00
Ruslan Kuprieiev 1b2400842d checkout: catch ENOSYS 2021-11-11 22:38:29 +02:00
Saugat Pachhai (सौगात) 81db879c51 hardlink: fallback to other link methods if 38 error code is received
Fixes #6962, where GDdrive mounted on Colab was failing when trying to hardlink
with the message that the 'Function not implemented'.
2021-11-11 22:38:29 +02:00
Saugat Pachhai (सौगात) d668cbeb45 exp init: warn for code/data if they don't exist 2021-11-11 08:09:37 +05:45
Saugat Pachhai (सौगात) a466241552 exp init: validate params as soon as it's entered in prompt
It'll give a error message to the user and reprompt them.
This mechanism can be extended to other prompts, and we
can show a warning message and/or reprompt them based on
validations.

Closes #6865. Part of #6446.
2021-11-11 08:09:37 +05:45
Ruslan Kuprieiev 7e3e257c7f utils: fs: remove unused fs_copy 2021-11-11 01:26:37 +02:00
Paweł Redzyński ab56e4bb9b gha: limit python version to 3.9.7
Related: https://bugs.python.org/issue45235
Closes: #6956
2021-11-11 01:14:03 +02:00
Paweł Redzyński 36ed182f26 argparse: dont override cmd
Related: #6956, https://bugs.python.org/issue45235
2021-11-11 01:14:03 +02:00
Ruslan Kuprieiev 045d1f5e3e localfs: remove LocalPath
fs.path is meant to be lightweight, and we should try to avoid using os.path.

Leftover from #6946
2021-11-10 20:10:48 +02:00
Ruslan Kuprieiev 5214aec1bb fspath: introduce relparts 2021-11-10 20:10:48 +02:00
David de la Iglesia Castro 72066f233b exp show: Add --only-changed option.
Use TabularData `drop_duplicates` to only show metrics/params with values varying across the selected experiments.

Fixes #5966
2021-11-10 16:52:18 +02:00
David de la Iglesia Castro cb6f625dd9 TabularData: Add drop_duplicates method.
This method mimics pandas `drop_duplicates` when axis=rows.

For axis=cols this method will drop columns with 0-variance (only
1 unique value). NaNs (`_fill_value`) won't be counted as unique values.

So the following column (`-` would be the `_fill_value`) will be dropped:

foo
-
foo
foo
2021-11-10 16:52:18 +02:00
dependabot[bot] 87fadd3225 build: bump dvclive from 0.4.2 to 0.4.3
Bumps [dvclive](https://github.com/iterative/dvclive) from 0.4.2 to 0.4.3.
- [Release notes](https://github.com/iterative/dvclive/releases)
- [Commits](https://github.com/iterative/dvclive/compare/0.4.2...0.4.3)

---
updated-dependencies:
- dependency-name: dvclive
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
2021-11-10 11:46:41 +01:00
dependabot[bot] 8f028028b9 build: bump types-requests from 2.25.11 to 2.25.12
Bumps [types-requests](https://github.com/python/typeshed) from 2.25.11 to 2.25.12.
- [Release notes](https://github.com/python/typeshed/releases)
- [Commits](https://github.com/python/typeshed/commits)

---
updated-dependencies:
- dependency-name: types-requests
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
2021-11-10 11:45:42 +01:00
Batuhan Taskaya 9aec8f1926 dvc: get rid of path_info
Intermediate PR in removing path_info from our code base.

It is completely removed from the main codebase and is still
being used in tests, which will be migrated in the followups.

For fs-specific simple path manipulation, we've introduced
`fs.path` helper (similar to `os.path`).

Fixes #6774
2021-11-10 00:52:48 +02:00
dependabot[bot] 4175f9ffa4 build: bump s3/gcsfs from 2021.10.1 to 2021.11.0
Bumps [gcsfs](https://github.com/fsspec/gcsfs) from 2021.10.1 to 2021.11.0.
- [Release notes](https://github.com/fsspec/gcsfs/releases)
Bumps [s3fs](https://github.com/fsspec/s3fs) from 2021.10.1 to 2021.11.0.
- [Release notes](https://github.com/fsspec/s3fs/releases)
- [Changelog](https://github.com/fsspec/s3fs/blob/main/release-procedure.md)

---
updated-dependencies:
- dependency-name: s3fs
  dependency-type: direct:development
  update-type: version-update:semver-minor
- dependency-name: gcsfs
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
2021-11-08 11:13:52 +08:00
Guðmundur HeimissonandRuslan Kuprieiev c5b1a73dc5 webhdfs: expose kerberos and https options (#6936)
* Add fsspec options for webhdfs

* Add requests-kerberos dependency

* Update dvc/fs/webhdfs.py

Simplify config.pop.

Co-authored-by: Ruslan Kuprieiev <[email protected]>

* Update dvc/fs/webhdfs.py

* Simplify kerb_kwargs config setting.

Co-authored-by: Ruslan Kuprieiev <[email protected]>

Co-authored-by: Ruslan Kuprieiev <[email protected]>
2021-11-07 20:42:10 +02:00
Saugat Pachhai (सौगात) 044e79000d deps: bump rich to >=10.13.0
It comes with the support for no. of parameters that matches with json.dumps.
See: https://github.com/willmcgugan/rich/pull/1547 and
https://github.com/willmcgugan/rich/pull/1644.

Also added support for printing json to stderr. Before we used to use json.dumps
and rich.json.JSON based on isatty. Now we use rich.print_json on both
tty and non-tty conditions, which may avoid different behaviours in the
future.
2021-11-07 19:38:06 +02:00
karajan1001 be6128470f machine status: include two new field in the output
1. include instance_type and instance_gpu in the output.
2. rerange the field by importance.
2021-11-04 15:10:45 +02:00
Saugat Pachhai (सौगात) dd0d4f5a2c exp init: don't try tracking params if they are skipped 2021-11-03 19:21:10 +05:45
Saugat Pachhai (सौगात) 6e0dfb94e4 exp init: hide message about workspace tree on --explicit 2021-11-03 18:59:25 +05:45
Saugat Pachhai (सौगात) ce6c8a5678 exp init: fix --explicit failing with KeyError
Fixes #6917
2021-11-03 16:42:45 +05:45
dependabot[bot] b927337a30 build(deps): bump actions/checkout from 2.3.5 to 2.4.0
Bumps [actions/checkout](https://github.com/actions/checkout) from 2.3.5 to 2.4.0.
- [Release notes](https://github.com/actions/checkout/releases)
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)
- [Commits](https://github.com/actions/checkout/compare/v2.3.5...v2.4.0)

---
updated-dependencies:
- dependency-name: actions/checkout
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
2021-11-03 12:47:22 +02:00
Saugat Pachhai (सौगात) 03b372a073 exp init: ask for command before paths 2021-11-03 05:23:40 +05:45
Saugat Pachhai (सौगात) 915a755e2f build: remove numpy restriction 2021-11-03 05:23:17 +05:45
Paweł Redzyński 22cc2a5cbc plots: fix resolve template path bug
Fix: #6854
2021-11-02 16:49:56 +02:00
Saugat Pachhai (सौगात) a67d8a44b3 exp init: make confirmation prompt at the end similar to others 2021-11-02 17:24:09 +05:45
Saugat Pachhai (सौगात) 80a52e65ad exp init: minor refactor on way it returns prompted values 2021-11-02 14:57:40 +05:45
Saugat Pachhai (सौगात) 208ccb2430 exp init: autostage .gitignores, dvc.yaml and params file 2021-11-02 12:00:06 +05:45
dependabot[bot] 97e97c7f24 build(deps-dev): bump filelock from 3.3.1 to 3.3.2
Bumps [filelock](https://github.com/tox-dev/py-filelock) from 3.3.1 to 3.3.2.
- [Release notes](https://github.com/tox-dev/py-filelock/releases)
- [Changelog](https://github.com/tox-dev/py-filelock/blob/main/docs/changelog.rst)
- [Commits](https://github.com/tox-dev/py-filelock/compare/3.3.1...3.3.2)

---
updated-dependencies:
- dependency-name: filelock
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
2021-11-02 08:16:37 +05:45
dependabot[bot] 1d1451ddd3 build(deps): bump pyinstaller from 4.5.1 to 4.6
Bumps [pyinstaller](https://github.com/pyinstaller/pyinstaller) from 4.5.1 to 4.6.
- [Release notes](https://github.com/pyinstaller/pyinstaller/releases)
- [Changelog](https://github.com/pyinstaller/pyinstaller/blob/v4.6/doc/CHANGES.rst)
- [Commits](https://github.com/pyinstaller/pyinstaller/compare/v4.5.1...v4.6)

---
updated-dependencies:
- dependency-name: pyinstaller
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
2021-11-02 08:16:18 +05:45
pre-commit-ci[bot] 0cc7c4c02b [pre-commit.ci] pre-commit autoupdate
updates:
- [github.com/ambv/black: 21.9b0 → 21.10b0](https://github.com/ambv/black/compare/21.9b0...21.10b0)
2021-11-02 06:30:13 +05:45
Saugat Pachhai d3d459caa0 Revert "deps: require chardet as a dependency"
This reverts commit a4dc8ddc74.
2021-11-02 06:17:31 +05:45
Saugat Pachhai a4dc8ddc74 deps: require chardet as a dependency
Looks like azure-core is dependent on a dependency `chardet` that aiohttp brought it with, which has been replaced with `charset_normalizer`.
But azure-core depends on internal of aiohttp and looks like it tries to set it's own encoding parser, `chardet` which is now not available.
2021-11-01 18:25:39 +02:00
Saugat Pachhai 3eceeea3e8 Remove python 3.10 restriction for pyarrow
Pyarrow 6 is now available for Python 3.10. Fixes https://github.com/iterative/dvc/issues/6878.
2021-11-01 20:00:21 +05:45
Saugat Pachhai (सौगात) 8fc959060a tests: skip based on conditional import on pyarrow
From now on, pyarrow dependency is optional for the tests.
2021-11-01 19:15:28 +05:45
David de la Iglesia Castro 0638d99fe3 LiveTask: write output path at start/end
Writing at the end of each step (create_summary) can mess up with some ML Framework progress bars, I moved the message to the monitor task, as the path won't change during training.

Fixes iterative/dvclive#177
2021-10-29 14:41:03 +02:00
David de la Iglesia Castro 24abc6f328 TabularData: Add dropna method.
This method mimics pandas `dropna`.
2021-10-29 15:28:36 +03:00
David de la Iglesia Castro 4dd544121f plots: Use URI for --open.
We were previously using relpath in *all* cases, mainly to support WSL but relpath doesn't work
on macOS.

Added a check for using relpath *only* for WSL.

Fixes #6092
2021-10-29 13:27:12 +02:00
Ruslan Kuprieiev 869ea442ef output: save: remove redundant changed() call
No longer needed since object introduction, as we will compare staged
object during commit/checkout anyway.
2021-10-29 01:45:10 +03:00
Ruslan Kuprieiev 922eb20e44 staging: don't use move 2021-10-27 20:19:17 +03:00
Ruslan Kuprieiev a2f91ed5fd checkout: always confirm link type
Currently whether or not link confirmation will run depends on
particular filesystem and existing workspace link type, which introduces
inconsistency in behaviour, where we sometimes catch unsupported links
before touching user data and sometimes we don't.
2021-10-27 20:19:17 +03:00
Ruslan Kuprieiev 017762fc2c checkout: don't forget to protect() back objects
Depending on a filesyste (e.g. on NTFS), `_remove` might reset
read-only permissions in order to delete a hardlink to protected object,
which will also reset it for the object itself, making it unprotected,
so we need to protect it back.
2021-10-27 20:19:17 +03:00
Ruslan Kuprieiev 874aceccf8 system: use linkat instead of link
`os.link` is broken across platforms when dealing with symlinks.

See https://bugs.python.org/issue41355 for more info.
2021-10-27 20:19:17 +03:00
Ruslan Kuprieiev 41aee9a3b7 localfs: use mtime/size/inode for checksum
Currently it depends on the whole `info()` output, which has too much
information that doesn't really matter. To check if file contents didn't
change mtime, size, inode combo is enough.
2021-10-27 20:19:17 +03:00
Peter Rowlands (변기호) 0d895e2661 exp: add initial ssh executor (#6833)
* executor: move local specific git initialization out of base

* machine: return kwargs for executor init instead of executor object

* executor: add initial ssh executor

* ssh-executor: disable strict host checking for dvc-machine instances

* initial tests for ssh executor

* drop GIT_SSH_COMMAND usage

* push: accept destination odb as a parameter

* separate cache initialization into executor.init_cache

* add test for ssh executor cache init

* remove dead code

* machine: fixture-ize default test scenarios

* test SSHExecutor.from_machine

* tpi: return default SSH port for constructing executors
2021-10-26 16:08:17 +09:00
Saugat Pachhai 14eaba4cdb exp init: iterate on ui, tree and show to-be-generated yaml content (#6750)
* iterate on ui, has tree and shows to-be-generated yaml content

* order fs tree structure alphabetically

* always show the heading

* hide dvclive on tree if not on live mode

* Change message at the end

* s/skip/omit

* add link on the header

* remove newline on non-interactive mode
2021-10-26 08:22:33 +05:45
Dave Berenbaum 3064738a34 fix msg in for ExperimentExistsError (#6864) 2021-10-26 10:55:08 +09:00
GaoandPeter Rowlands c07592131a exp run: add experiment name check. (#6848)
* Add experiment name check.

1. Add experiment name check (https://git-scm.com/docs/git-check-ref-format)
2. Add duplicate exp name check.
3. Add some unit test for it.

* Ban slash / in dvc exp names

* Use dulwich backend for ref name checking

* Some bug fix

* Update dvc/repo/experiments/__init__.py

Co-authored-by: Peter Rowlands (변기호) <[email protected]>

* Update dvc/repo/experiments/__init__.py

Co-authored-by: Peter Rowlands (변기호) <[email protected]>

* Some review changes

* Make some funtion more reusable.

Co-authored-by: Peter Rowlands (변기호) <[email protected]>
2021-10-25 20:16:37 +09:00
Saugat Pachhai 52a9cddc14 exp init: remove default in cli, add default in help instead (#6862)
The default made it harder to detect between the default and explicitly provided values, which we need for interactive mode.
2021-10-25 16:32:17 +05:45
Ruslan Kuprieiev 38cbebfb28 fs: transfer: try reflink (#6853)
If supported, reflink, will provide the fastest transfer possible.
That being said, right now we use `move` in most of the places,
which still takes presidence.

Pre-requisite for #6387
2021-10-24 22:46:02 +03:00
dependabot[bot]andSaugat Pachhai 5017c2f282 build(deps): update pyparsing requirement from ==2.4.7 to >=2.4.7
build(deps): update pyparsing requirement from ==2.4.7 to >=2.4.7 

Updates the requirements on [pyparsing](https://github.com/pyparsing/pyparsing) to permit the latest version.
- [Release notes](https://github.com/pyparsing/pyparsing/releases)
- [Changelog](https://github.com/pyparsing/pyparsing/blob/master/CHANGES)
- [Commits](https://github.com/pyparsing/pyparsing/compare/pyparsing_2.4.7...pyparsing_3.0.0)

Signed-off-by: dependabot[bot] <[email protected]>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Saugat Pachhai <[email protected]>
2021-10-24 15:22:46 +00:00
dependabot[bot] 1bf6cc7c2f build(deps): bump pylint-pytest from 1.0.3 to 1.1.2 (#5894)
Bumps [pylint-pytest](https://github.com/reverbc/pylint-pytest) from 1.0.3 to 1.1.2.
- [Release notes](https://github.com/reverbc/pylint-pytest/releases)
- [Changelog](https://github.com/reverbc/pylint-pytest/blob/master/CHANGELOG.md)
- [Commits](https://github.com/reverbc/pylint-pytest/compare/pylint-pytest-1.0.3...pylint-pytest-1.1.2)

Signed-off-by: dependabot[bot] <[email protected]>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2021-10-24 20:08:58 +05:45
dependabot[bot] 27666ffba7 build(deps-dev): Bump dvclive from 0.4.1 to 0.4.2 (#6846)
Bumps [dvclive](https://github.com/iterative/dvclive) from 0.4.1 to 0.4.2.
- [Release notes](https://github.com/iterative/dvclive/releases)
- [Commits](https://github.com/iterative/dvclive/compare/0.4.1...0.4.2)

---
updated-dependencies:
- dependency-name: dvclive
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2021-10-24 19:03:24 +05:45
Ruslan Kuprieiev e2d705fd76 link: use proper exceptions (#6852)
* link: use proper exceptions

* system: use ENOTSUP instead of NotImplementedErrorwq
2021-10-23 02:38:17 +03:00
Saugat Pachhai 719e93192f move scm.install to dvc.install (#6849)
scm.install does 3 different things, and all of those are
very much tied to DVC. So, as we are splitting scm out,
it should now belong to `dvc.install`.
2021-10-22 14:53:33 +03:00
Saugat Pachhai 501256708d use system hook for mypy; fix raised issues (#6851) 2021-10-22 15:40:54 +05:45
Saugat Pachhai 800fbc7ad0 Use -n=auto in tests
Linux/Windows machines have only 2 cores, whereas macOS machines have 3 cores. Maybe we are stretching available resources by 2x, let's see if `-n=auto` improves test freezes.
2021-10-22 08:46:55 +05:45
Peter Rowlands (변기호) 73f2fa8c93 git: use asyncssh as dulwich SSH vendor (#6797)
* git: support client kwargs for auth in remote methods

* tests: use docker for git/ssh server

* move dulwich backend into subdir

* add base sync<->async support

* dulwich: add initial asyncssh SSH vendor

* dulwich: use asyncssh as the default SSH vendor

* add test for git over ssh

* test read (fetch) over ssh

* ci: re-enable ssh tests

temporary workaround for #6788, #6789

* move async stubs into dvc.scm.asyn

* tests: use sshfs and not dvc.fs.ssh

* allow explicit 0-length read in asyncssh vendor
2021-10-21 14:36:45 +09:00
b652670cbf Dependabot/pip/pylint 2.11.1 (#6843)
* build(deps): Bump pylint from 2.9.6 to 2.11.1

Bumps [pylint](https://github.com/PyCQA/pylint) from 2.9.6 to 2.11.1.
- [Release notes](https://github.com/PyCQA/pylint/releases)
- [Changelog](https://github.com/PyCQA/pylint/blob/main/ChangeLog)
- [Commits](https://github.com/PyCQA/pylint/compare/v2.9.6...v2.11.1)

---
updated-dependencies:
- dependency-name: pylint
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>

* fix pylint problems

* Updation after rebase.

* system: use binary mode

* Set remote execution script encoding type locale

* Update dvc/machine/__init__.py

Co-authored-by: Peter Rowlands (변기호) <[email protected]>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Ruslan Kuprieiev <[email protected]>
Co-authored-by: Peter Rowlands (변기호) <[email protected]>
2021-10-20 14:34:10 +03:00
Gao 6de3e734ed Revert "build(deps): Bump pylint from 2.9.6 to 2.11.1 (#6636)" (#6842)
This reverts commit 464620806c.
2021-10-20 12:41:00 +03:00
Gao 4b2bec89ec dvc machine: add a new command rename to it (#6633)
* `dvc machine`: add a new command `rename` to it

fix #6481
1. add new command `dvc machine rename`
2. add a unit test for the call.
3. add several functional tests for it.t push myself fix6481

* Move rename logic to tpi

* use tpi.state_mv instead of rename

* Rebase to a newer version

* Update tpi version

* Remove unused assert and try catch
2021-10-20 15:57:44 +09:00
Saugat Pachhai 6c0bc9563c enable pywin32 for Python3.10, make it an optional dependency (#6841) 2021-10-20 11:25:00 +05:45
f964a44e7c Exp show md (#6799)
* Added `--md`/`--show-md` option to `exp show`.

* Added test_show_experiments_md

* Fixed re-defining all_experiments

* Fixed all_experiments

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* Added dest markdown

* Added textwrap.dedent

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* Update experiments.py

* Apply suggestions from code review

Co-authored-by: Saugat Pachhai <[email protected]>

* Update tests/unit/command/test_compat_flag.py

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2021-10-20 11:04:57 +05:45
464620806c build(deps): Bump pylint from 2.9.6 to 2.11.1 (#6636)
* build(deps): Bump pylint from 2.9.6 to 2.11.1

Bumps [pylint](https://github.com/PyCQA/pylint) from 2.9.6 to 2.11.1.
- [Release notes](https://github.com/PyCQA/pylint/releases)
- [Changelog](https://github.com/PyCQA/pylint/blob/main/ChangeLog)
- [Commits](https://github.com/PyCQA/pylint/compare/v2.9.6...v2.11.1)

---
updated-dependencies:
- dependency-name: pylint
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>

* fix pylint problems
* system: use binary mode

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: karajan1001 <[email protected]>
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2021-10-20 10:32:44 +08:00
Saugat Pachhai 4244e5a475 fix #6835 (#6837) 2021-10-19 21:59:09 +03:00
Saugat Pachhai 0c41a25bbe move some configs to pyproject.toml (#6834) 2021-10-19 19:47:51 +03:00
Matthew Beckers 26f435a433 exp run: throw error if new parameters are added by --set-param (#6521)
* throw error if new parameters are added by dvc run exp -S

Throws an error if dvc run exp --set-param references a parameter key path
that is not in the target config file. This is done to prevent silent errors
in experimentation when new params are accidentally added instead of modifying
current ones due to typos.

This implementation is based on initial suggestions in issue #5477.

* fix mypy confusion from overwriting a var

* tests: remove modify param test that was adding params

One of the test in test_modify_params was still adding a parameter

* tests: remove param modification during exp run in test_untracked

Spurious usage of modifying a parameter when the params.yaml is not yet existing in test_untracked.

* remove benedict dependency for verifying params

Instead, the keypath util module from benedict is adapted into the dvc codebased and used
natively to verify that a keypath exists within a dict.

* exp: list all invalid param modifications in error message

* exp-run: more specific exception for new params via --set-param

Uses established MissingPramsError instead of DvcException. Modified message to be more similar to other uses of this exception.

* Revert "remove benedict dependency for verifying params"

This reverts commit 6170f16dcc4033667fbacb0d0bc13c60898f58c4.

* exp: use internal benedict import for validating params

* exp: combine new param validation into merge_params

Moves new param validation into existing merge_params function as an optional check

* exp: minor ammendments to error message

* Revert "tests: remove param modification during exp run in test_untracked"

This reverts commit c9eb1a62af58586509ded362cc79e75ddc4b119c.

* exp: fix test_untracked to not fail due to new params

Fixed by creating the params file with the new parameter already present.
2021-10-19 17:46:36 +09:00
966dc8a1ca machine: Add a new command dvc machine status (#6649)
* machine: Add a new command `dvc machine status`

fix#6482
1. add a new command `dvc machien status`
2. add a unit test for the cli call.
3. add a unit test for the shown result.

* Update dvc/command/machine.py

Co-authored-by: Saugat Pachhai <[email protected]>

* Update dvc/command/machine.py

Co-authored-by: Saugat Pachhai <[email protected]>

* Update machine.py

* Remove sensitive fields

* Update dvc/machine/__init__.py

Co-authored-by: Casper da Costa-Luis <[email protected]>

* Update tests/func/machine/__init__.py

Co-authored-by: Casper da Costa-Luis <[email protected]>

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* Use white list to limit shown fields

Co-authored-by: Saugat Pachhai <[email protected]>
Co-authored-by: Casper da Costa-Luis <[email protected]>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
2021-10-19 17:38:11 +09:00
eggqq007andZhenyu Gao 6d96ecb376 dvcfs: handle new workspace subdirectories in walk (#6811)
1. add try-catch to catch KeyError exception while walking dvc folder
2. Fix #6695

Co-authored-by: Zhenyu Gao <[email protected]>
2021-10-19 17:33:02 +09:00
Batuhan Taskaya 9e57d1c32d gdrive: remove redundant _gdrive_retry function (#6831) 2021-10-18 21:52:39 +00:00
Batuhan Taskaya c08655ac38 plots: fix the dictionary to return PathInfos (#6830) 2021-10-18 22:04:21 +02:00
David de la Iglesia Castro 4f16852005 exp/metrics/params diff: Replaced Old/New with a_rev/b_rev (#6814)
* Replaced Old/New with a_rev/b_rev

* Fixed tests
2021-10-18 21:09:02 +03:00
Ruslan Kuprieiev 7bef6fd64f setup: bump fsspec deps (#6828) 2021-10-18 21:01:03 +03:00
pre-commit-ci[bot] 422d883e18 [pre-commit.ci] pre-commit autoupdate (#6829)
updates:
- [github.com/lovesegfault/beautysh: v6.1.0 → v6.2.1](https://github.com/lovesegfault/beautysh/compare/v6.1.0...v6.2.1)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
2021-10-18 20:47:48 +03:00
Saugat Pachhai 48004b1340 Revert "webdav: limit httpx to fix the CI" (#6827)
* Revert "webdav: limit httpx to fix the CI (#6800)"

This reverts commit af34f5a0f1.

* Bump webdav4 requirement
2021-10-18 20:32:46 +03:00
dependabot[bot] 2ae421cea2 build(deps-dev): Bump filelock from 3.3.0 to 3.3.1 (#6825)
Bumps [filelock](https://github.com/tox-dev/py-filelock) from 3.3.0 to 3.3.1.
- [Release notes](https://github.com/tox-dev/py-filelock/releases)
- [Changelog](https://github.com/tox-dev/py-filelock/blob/main/docs/changelog.rst)
- [Commits](https://github.com/tox-dev/py-filelock/compare/3.3.0...3.3.1)

---
updated-dependencies:
- dependency-name: filelock
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>

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2021-10-18 19:53:37 +05:45
dependabot[bot] 812fde9891 build(deps-dev): Bump types-requests from 2.25.9 to 2.25.11 (#6820)
Bumps [types-requests](https://github.com/python/typeshed) from 2.25.9 to 2.25.11.
- [Release notes](https://github.com/python/typeshed/releases)
- [Commits](https://github.com/python/typeshed/commits)

---
updated-dependencies:
- dependency-name: types-requests
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>

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2021-10-18 19:51:13 +05:45
dependabot[bot] 4ed4766692 build(deps): Bump actions/checkout from 2.3.4 to 2.3.5 (#6817)
Bumps [actions/checkout](https://github.com/actions/checkout) from 2.3.4 to 2.3.5.
- [Release notes](https://github.com/actions/checkout/releases)
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)
- [Commits](https://github.com/actions/checkout/compare/v2.3.4...v2.3.5)

---
updated-dependencies:
- dependency-name: actions/checkout
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2021-10-18 19:43:41 +05:45
dependabot[bot] 9943cd43b1 build(deps-dev): Bump types-tabulate from 0.8.2 to 0.8.3 (#6790)
Bumps [types-tabulate](https://github.com/python/typeshed) from 0.8.2 to 0.8.3.
- [Release notes](https://github.com/python/typeshed/releases)
- [Commits](https://github.com/python/typeshed/commits)

---
updated-dependencies:
- dependency-name: types-tabulate
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2021-10-18 19:42:50 +05:45
dependabot[bot] 7d3f35e6ab build(deps-dev): Bump types-toml from 0.10.0 to 0.10.1 (#6821)
Bumps [types-toml](https://github.com/python/typeshed) from 0.10.0 to 0.10.1.
- [Release notes](https://github.com/python/typeshed/releases)
- [Commits](https://github.com/python/typeshed/commits)

---
updated-dependencies:
- dependency-name: types-toml
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2021-10-18 20:57:43 +09:00
dependabot[bot] 4de261f717 build(deps-dev): Bump dvclive from 0.4.0 to 0.4.1 (#6786)
Bumps [dvclive](https://github.com/iterative/dvclive) from 0.4.0 to 0.4.1.
- [Release notes](https://github.com/iterative/dvclive/releases)
- [Commits](https://github.com/iterative/dvclive/compare/0.4.0...0.4.1)

---
updated-dependencies:
- dependency-name: dvclive
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2021-10-18 13:33:26 +03:00
Paweł Redzyński db75878bef plots: make generator out of collect (#6793) 2021-10-15 17:24:02 +03:00
Ruslan Kuprieiev 7f5c53c10e ui: write_json: don't forget json kwargs (#6810)
Regression from #6743

Fixes #6803
2021-10-15 01:30:22 +03:00
Ruslan Kuprieiev 259d590527 setup.cfg: remove types-paramiko (#6807)
We are no longer using them since migration to sshfs.

Closes #6806
2021-10-14 16:00:10 +03:00
dependabot[bot]andRuslan Kuprieiev 709bfe598f build(deps): Update flufl-lock requirement from <4,>=3.2 to >=5 (#6576)
* build(deps): Update flufl-lock requirement from <4,>=3.2 to >=3.2,<7

Updates the requirements on [flufl-lock](https://gitlab.com/warsaw/flufl.lock) to permit the latest version.
- [Release notes](https://gitlab.com/warsaw/flufl.lock/tags)
- [Commits](https://gitlab.com/warsaw/flufl.lock/compare/3.2...6.0)

---
updated-dependencies:
- dependency-name: flufl-lock
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <[email protected]>

* upgrade flufl.lock

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Ruslan Kuprieiev <[email protected]>
2021-10-14 15:26:40 +03:00
David de la Iglesia Castro 7e4f443002 Added test_show_experiments_sort_by (#6798)
* Added test_show_experiments_sort_by

* Added comment

* help formatting
2021-10-14 14:49:00 +03:00
2a3a93314b pathspec 0.9.0 quickfix (#6689)
* pathspec 0.9.0 quickfix

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* restrict requirement properly

Co-authored-by: Gao <[email protected]>

* revert change_rule update

* adjust tests to pathspec 0.9.0

* lower bound restrict pathspec

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Gao <[email protected]>
Co-authored-by: Saugat Pachhai (सौगात) <[email protected]>
Co-authored-by: mergify[bot] <37929162+mergify[bot]@users.noreply.github.com>
2021-10-14 14:25:03 +03:00
Paweł Redzyński a1b146669c plots: load templates from package (#6550)
* plots: vega: make interactive linear default plot

* plots: stop dumping default templates

* plots: move templates to package initial

* plots: update default plots schema

* plots: write defaults on init

* templates: migrate to importlib.resources

* fixup

* fixup
2021-10-14 08:40:31 +02:00
Peter Rowlands (변기호) b8478a8b04 machine: re-add instance dir management from TPI (#6748)
* machine: re-add instance dir management from TPI

* update default constructor

* machine: lazy load Repo.machine
2021-10-14 12:40:30 +09:00
Michael Lingelbach 0ae9130052 dvc: add 'repos' list to pre-commit config if it does not exist (#6795) 2021-10-13 22:50:25 +03:00
Batuhan Taskaya af34f5a0f1 webdav: limit httpx to fix the CI (#6800) 2021-10-13 16:49:54 +03:00
Ruslan Kuprieiev e9a7e0657d dvc: drop 3.6 support (#6792)
* dvc: drop 3.6 support

Considering that 3.6 has ~2 months until EOL, and our deps are
dropping support for it already (e.g. pygit2), we are droppipping
it as well. This will reduce the load on our test CI as well, since
we've started supporting 3.10 recently.

* setup.cfg: adjust requirements

* daemon: remove 3.6 logic

* tests: utils: remove pre 3.7 logic
2021-10-12 18:53:28 +03:00
Saugat PachhaiandRuslan Kuprieiev 8abda93e3e use setuptools_scm and build_requires (#6775)
* use setuptools_scm and build_requires

* remove kwargs from setup.py

* fix tests; fetch in depth in github actions

* use build to build sdist/wheel

* try updating pip and setuptools

* update pip

* remove or unpin wheel

* bring back the version in pyinstaller

* Update scripts/build.py

Co-authored-by: Ruslan Kuprieiev <[email protected]>
2021-10-12 17:58:14 +03:00
Ruslan Kuprieiev 53255c22b3 gha: tests: temporarily disable some remote tests (#6789)
* gha: tests: temporarily disable some remote tests

See #6788

* machine: upgrade tpi version

```
dvc/machine/backend/terraform.py:28:19: E1101: Instance of 'TerraformBackend' has no '_default_resource' member; maybe 'default_resource'? (no-member)
```

* tests: remotes: require --s3 for s3 tests
2021-10-12 17:26:47 +03:00
Paweł RedzyńskiandJorge Orpinel 6da15629c4 plots: modify: add note on modyfying image type plots (#6742)
* plots: modify: add note on modyfying image type plots

* Update dvc/command/plots.py

Co-authored-by: Jorge Orpinel <[email protected]>

Co-authored-by: Jorge Orpinel <[email protected]>
2021-10-12 16:08:49 +03:00
Ruslan Kuprieiev 5cfe61928e tree: use oids instead of objects (#6785) 2021-10-12 05:39:10 +03:00
Ruslan Kuprieiev 32467ada32 objects: extract size/nfiles to Meta (#6784)
* stage: capture metadata

* tree: capture metadata

* objects: extract size/nfiles from HashInfo/HashFile/Tree to Meta
2021-10-12 03:06:18 +03:00
pre-commit-ci[bot] 5cbaa8d98e [pre-commit.ci] pre-commit autoupdate (#6782)
updates:
- [github.com/pre-commit/mirrors-mypy: v0.910 → v0.910-1](https://github.com/pre-commit/mirrors-mypy/compare/v0.910...v0.910-1)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
2021-10-12 02:27:56 +03:00
Ruslan Kuprieiev 4762c38ff7 dvc: bump to 2.8.1 2021-10-11 16:09:51 +03:00
Ruslan Kuprieiev 66acbc892a setup.cfg: use text/x-rst instead of text/rst
Per https://packaging.python.org/specifications/core-metadata/#description-content-type
2021-10-11 16:09:29 +03:00
Ruslan Kuprieiev d2edbae7e3 dvc: bump to 2.8.0 2021-10-11 15:47:58 +03:00
Batuhan Taskaya be0c827b95 fs: add basic type annotations to FsspecWrapper (#6779) 2021-10-11 15:15:56 +03:00
Paweł Redzyński d6ecef7169 plots: fix wrong link (#6693) 2021-10-11 12:22:20 +02:00
eggqq007andZhenyu Gao e8b649a75f Fix exp show --sort-by issue #6675 (#6764)
Co-authored-by: Zhenyu Gao <[email protected]>
2021-10-11 16:46:38 +09:00
Batuhan Taskaya 8767f42f39 gs: use 3-char prefixes (#6759)
Resolves #6691. Normally it should have inherited this from the `ObjectFSWrapper`, but this seems like a leftover.
2021-10-11 16:16:17 +09:00
Paweł Redzyński 8580e66d60 gha: move cancelaltion into other workflows (#6771) 2021-10-08 18:03:07 +03:00
Saugat Pachhai c24ae2b0c3 exp init: show defaults in help message (#6763) 2021-10-08 20:14:12 +05:45
Saugat Pachhai 4e17279440 exp init: add config support (#6761) 2021-10-08 20:14:01 +05:45
Batuhan Taskaya 50cdf4f213 fsspec: normalize checksum() to return string (#6767) 2021-10-08 16:57:37 +03:00
Saugat Pachhai f628f670c9 advertise Python 3.10 support (#6772)
* advertise Python 3.10 support

Pygit2 does not have windows wheels yet and no pyarrow
for 3.10. But these platform-dependent things and
remote-dependent things should not stop us from
advertising support as we are pure-python based
package and we cannot claim support for all of our
dependencies.

* set pygit2 for Python 3.6 to <1.7
2021-10-08 15:50:05 +03:00
Batuhan Taskaya d7489bb65f hdfs: enable mocked hdfs tests by default (#6766) 2021-10-08 12:42:41 +02:00
dependabot[bot]andPaweł Redzyński 5a4f4d3a8e build(deps): Bump filelock from 3.2.0 to 3.3.0 (#6737)
* build(deps): Bump filelock from 3.2.0 to 3.3.0

Bumps [filelock](https://github.com/tox-dev/py-filelock) from 3.2.0 to 3.3.0.
- [Release notes](https://github.com/tox-dev/py-filelock/releases)
- [Commits](https://github.com/tox-dev/py-filelock/compare/3.2.0...3.3.0)

---
updated-dependencies:
- dependency-name: filelock
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>

* tests: remotes: ignore abstract class instantiation for filelock

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
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2021-10-08 15:36:33 +05:45
dependabot[bot] 2c24b24562 build(deps-dev): Bump types-requests from 2.25.6 to 2.25.9 (#6770)
Bumps [types-requests](https://github.com/python/typeshed) from 2.25.6 to 2.25.9.
- [Release notes](https://github.com/python/typeshed/releases)
- [Commits](https://github.com/python/typeshed/commits)

---
updated-dependencies:
- dependency-name: types-requests
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2021-10-08 14:59:09 +05:45
dependabot[bot] df9f76c2c0 build(deps-dev): Bump types-paramiko from 0.1.9 to 2.7.1 (#6769)
Bumps [types-paramiko](https://github.com/python/typeshed) from 0.1.9 to 2.7.1.
- [Release notes](https://github.com/python/typeshed/releases)
- [Commits](https://github.com/python/typeshed/commits)

---
updated-dependencies:
- dependency-name: types-paramiko
  dependency-type: direct:development
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2021-10-08 14:58:19 +05:45
dependabot[bot] 0db3ece060 build(deps-dev): Bump types-toml from 0.1.5 to 0.10.0 (#6768)
Bumps [types-toml](https://github.com/python/typeshed) from 0.1.5 to 0.10.0.
- [Release notes](https://github.com/python/typeshed/releases)
- [Commits](https://github.com/python/typeshed/commits)

---
updated-dependencies:
- dependency-name: types-toml
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2021-10-08 14:58:08 +05:45
Saugat Pachhai 7c437cc349 make dependabot updates work (#6760)
Dependabot was throwing Illformed requirements `"< '3.10'"` for the
hdfs. But I noticed that it did accept other requirements where we
do similar. So it seems the indentation fixes it.

Even then, dependabot did not update any dependencies. I removed
setup.py file, after which immediately it started creating PRs.
So, I recknoed that it must have been due to some mechanism
in place from dependabot to disallow execution, so I tried to
remove few blocks of code from setup.py. And, I was eventually
able to figure out that it was from the block where we import version.

So, I added a try-except block and it magically again worked. :)

Let's see how it goes.
2021-10-08 14:46:47 +05:45
Saugat Pachhai 3ed5efceb7 move defaults to the class level (#6762) 2021-10-08 12:18:28 +05:45
dependabot[bot]andPaweł Redzyński d33df60e41 build(deps): Bump dvclive from 0.3.0 to 0.4.0 (#6753)
* build(deps): Bump dvclive from 0.3.0 to 0.4.0

Bumps [dvclive](https://github.com/iterative/dvclive) from 0.3.0 to 0.4.0.
- [Release notes](https://github.com/iterative/dvclive/releases)
- [Commits](https://github.com/iterative/dvclive/compare/0.3.0...0.4.0)

---
updated-dependencies:
- dependency-name: dvclive
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>

* live: adjust tests to dvclive==0.4.0

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Paweł Redzyński <[email protected]>
2021-10-08 07:02:54 +05:45
Saugat Pachhai c5415342d0 move requirements to setup.cfg (#6758)
* move requirements to setup.cfg

* hash based on setup.cfg

* do not break webhdfs installation
2021-10-08 07:00:14 +05:45
Paweł Redzyński dd86076ba6 gha: cancel previous workflows (#6756) 2021-10-07 17:59:44 +03:00
Ruslan Kuprieiev 7dc3859400 pyinstaller: hooks: remove webhdfs 2021-10-07 17:30:22 +03:00
Batuhan Taskaya 4f3b28e268 webhdfs: migrate to fsspec (#6662)
* webhdfs: migrate to fsspec

* skip the tests that can't use hdfs
2021-10-07 17:02:31 +03:00
Ruslan Kuprieiev 32f435c47f gha: benchmarks: fix pytest flags (#6749)
Kudos @skshetry for catching.
2021-10-06 17:07:41 +03:00
Batuhan Taskaya 054feae778 hdfs: migrate to fsspec (#6604)
* hdfs: migrate to fsspec

* normalize windows paths when delegating back to fsspec
2021-10-06 15:44:27 +03:00
Saugat Pachhai 2abe515391 Pin dvclive to 0.3.0 2021-10-06 14:28:36 +05:45
eggqq007andZhenyu Gao 1eb89a2dc0 command: Should not consume 'print' to output default remote info (#6650)
1. should not consume 'print' to output default remote info,
   otherwise the --quiet would not work.

Co-authored-by: Zhenyu Gao <[email protected]>
2021-10-06 09:27:47 +05:45
eggqq007andZhenyu Gao 9c300a0a1c command: output prettify json in tty (#6743)
1. update diff.py,experiments.py,metrics.py,params.py,status.py to
print prettify json
2. rewrite write_json in __init__.py to accept default function
3. add new unit test for write_json in tests/unit/ui/test_console.py
4. Fix #6712

Co-authored-by: Zhenyu Gao <[email protected]>
2021-10-05 20:19:56 +05:45
Ruslan Kuprieiev 7b68a6f0ca gha: run benchmarks on PRs (#6733) 2021-10-05 14:18:43 +03:00
Saugat Pachhai ee823a59b9 Run on Python3.10 (#6745) 2021-10-05 16:46:53 +05:45
David de la Iglesia CastroandSaugat Pachhai 16f404b16a Fix dvclive running subdir (#6740)
* Fix dvclive running subdir

* Apply suggestions from code review

Co-authored-by: Saugat Pachhai <[email protected]>

* Applied suggestions

* Update tests/func/test_live.py

Co-authored-by: Saugat Pachhai <[email protected]>
2021-10-05 13:16:33 +05:45
Saugat Pachhai 0eda4bd91c exp init: only ask for that are not provided in an interactive mode (#6739) 2021-10-04 14:33:08 +05:45
Saugat Pachhai a098a50c8d move exp init logic to dvc.repo.experiments.init (#6738) 2021-10-04 12:26:34 +05:45
dependabot[bot] f57a378c0c build(deps): Bump jaraco-windows from 5.6.0 to 5.7.0 (#6735)
Bumps [jaraco-windows](https://github.com/jaraco/jaraco.windows) from 5.6.0 to 5.7.0.
- [Release notes](https://github.com/jaraco/jaraco.windows/releases)
- [Changelog](https://github.com/jaraco/jaraco.windows/blob/main/CHANGES.rst)
- [Commits](https://github.com/jaraco/jaraco.windows/compare/v5.6.0...v5.7.0)

---
updated-dependencies:
- dependency-name: jaraco-windows
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2021-10-04 10:12:47 +05:45
dependabot[bot] 3e0a50e52e build(deps): Bump pytest-cov from 2.12.1 to 3.0.0 (#6736)
Bumps [pytest-cov](https://github.com/pytest-dev/pytest-cov) from 2.12.1 to 3.0.0.
- [Release notes](https://github.com/pytest-dev/pytest-cov/releases)
- [Changelog](https://github.com/pytest-dev/pytest-cov/blob/master/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest-cov/compare/v2.12.1...v3.0.0)

---
updated-dependencies:
- dependency-name: pytest-cov
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2021-10-04 09:31:27 +05:45
Guillaume COTER ec72866eb9 Bump typing_extensions to >=3.7.4 (#6731) (#6732) 2021-10-03 20:10:28 +05:45
Batuhan Taskaya e53d390ff9 http: explicitly ignore all http-related errors (from server side to client connection drops) (#6728) 2021-10-02 20:42:23 +03:00
Batuhan Taskaya dd330ac592 setup: bump fsspec/s3fs/gcsfs (#6727) 2021-10-02 18:54:09 +02:00
pwoolvett 4ccb712b6d build(setup): avoid leaking tests package into site-packages (#6585)
Signed-off-by: Pablo Woolvett <[email protected]>
2021-10-02 16:46:45 +03:00
Saugat Pachhai ecee2d3522 Move static metadata to setup.cfg (#6581) 2021-10-02 16:08:30 +03:00
20bb6ddf3c doctor: fixes unknown cache directory error on some windows mapped network shares (#6364)
* doctor: fixes unknown cache director error on some windows mapped network shares

On Windows, resolve calls os.path._getfinalpathname, which calls GetFinalPathNameByHandle.
This starts from the final resolved path of the file in the NT namespace (e.g. \Device\Mup\server\share...)
and works backward as required to get the VOLUME_NAME_DOS. If the final path is a UNC share (i.e. \Device\Mup),
We fix this by calling resolve() also on the partition mountpoints
We also take the opportunity to make checks in case a PermissionError is returned to us

Fixes github.com/iterative/dvc/issues/6305

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* doctor: fixes unknown cache director error on some windows mapped network shares

On Windows, resolve calls os.path._getfinalpathname, which calls GetFinalPathNameByHandle.
This starts from the final resolved path of the file in the NT namespace (e.g. \Device\Mup\server\share...)
and works backward as required to get the VOLUME_NAME_DOS. If the final path is a UNC share (i.e. \Device\Mup),
We fix this by calling resolve() also on the partition mountpoints
We also take the opportunity to make checks in case a PermissionError is returned to us

Fixes #6305

Co-authored-by: CHETOUAN <[email protected]>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: CHETOUAN <[email protected]>
2021-10-02 16:06:42 +03:00
Saugat Pachhai e58fcd864b [WIP] exp init: introduce --with={default,live} flag (#6716)
* exp init: introduce `--with={default,live}` flag

This flag will select the different mode of outputs of stage.
With `--with=live`, it'll enable `live` setting in the stage.
On interactive mode, it'll always ask user if they want to
use live (unless `--with=live` is specified), and then it'll
skip metrics/plots question and moves on to ask for path to
dvclive path.

Also, if live setting is enabled in the stage, it'll set the
`models` to be a checkpoint output.

* s/with/type and don't ask for live interactively
2021-10-02 16:12:44 +05:45
Saugat Pachhai 0514db3bfa deps: loose requirements for dataclasses and aiohttp-retry (#6724) 2021-10-01 17:00:03 +05:45
Saugat Pachhai 1e0b2d7af0 benedict: monkeypatch, performance improvements, bugfixes (#6706)
Fixes #6476, fixes #6423 and closes #6484.
2021-10-01 18:16:47 +09:00
Casper da Costa-Luis bfcc8f877c add licence year + company (#6717) 2021-10-01 09:54:55 +02:00
Saugat Pachhai 46ad8745d3 Use latest pygit2 from master for 3.10 (#6723)
* Use latest pygit2 from master for 3.10

* ci: update brew
2021-10-01 11:48:11 +05:45
dependabot[bot] eb13d3ca83 build(deps): Bump google-cloud-storage from 1.42.2 to 1.42.3 (#6722)
Bumps [google-cloud-storage](https://github.com/googleapis/python-storage) from 1.42.2 to 1.42.3.
- [Release notes](https://github.com/googleapis/python-storage/releases)
- [Changelog](https://github.com/googleapis/python-storage/blob/main/CHANGELOG.md)
- [Commits](https://github.com/googleapis/python-storage/compare/v1.42.2...v1.42.3)

---
updated-dependencies:
- dependency-name: google-cloud-storage
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2021-10-01 08:27:40 +05:45
Ruslan Kuprieiev f46beb4958 checkout: move to objects (#6721)
Checkout operation is pretty much the opposite of staging, so it too belongs in objects.
2021-09-30 23:06:03 +03:00
Saugat Pachhai 9a1d74048a cli: add short alias for --show-{csv,json,md} (#6711)
As `--csv`/`--json`/`--md`
2021-09-30 20:38:32 +05:45
dependabot[bot] cce6aed378 build(deps): Bump filelock from 3.1.0 to 3.2.0 (#6710)
Bumps [filelock](https://github.com/tox-dev/py-filelock) from 3.1.0 to 3.2.0.
- [Release notes](https://github.com/tox-dev/py-filelock/releases)
- [Commits](https://github.com/tox-dev/py-filelock/compare/3.1.0...3.2.0)

---
updated-dependencies:
- dependency-name: filelock
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2021-09-30 08:49:39 +05:45
Saugat Pachhai 612696cf4a deps: add contextvars as a dependency for Python3.6 (#6705) 2021-09-29 10:39:14 +05:45
Saugat Pachhai (सौगात) 3f5f983f5f ui: import sys on write_json 2021-09-29 09:59:30 +05:45
eggqq007andZhenyu Gao fed9f088ca command: Show dvc list output with pretty JSON format if output to tty (#6647)
1. update ls __init__.py to output pretty JSON format
2. introduce write_json function into ui __init__.py

Co-authored-by: Zhenyu Gao <[email protected]>
2021-09-29 08:44:33 +05:45
Saugat Pachhai 05eaeef012 utils.http: remove open url (#6700)
This was used before on opening http urls as a stream,
but we no longer use those (as we use fsspec's open method).

One thing to note however is that, compared to previous
implementation, fsspec's http filesystem's open is not very
robust to failures.
2021-09-28 19:19:52 +05:45
Saugat Pachhai 48c0527755 exp init: show heading based on the presence of dvc.yaml file (#6701) 2021-09-28 15:11:58 +05:45
Saugat Pachhai 4668a35f64 exp init: support interactive and explicit options (#6681) 2021-09-28 14:36:21 +05:45
dependabot[bot] 8107ec849b build(deps): Bump filelock from 3.0.12 to 3.1.0 (#6698)
Bumps [filelock](https://github.com/tox-dev/py-filelock) from 3.0.12 to 3.1.0.
- [Release notes](https://github.com/tox-dev/py-filelock/releases)
- [Commits](https://github.com/tox-dev/py-filelock/compare/v3.0.12...3.1.0)

---
updated-dependencies:
- dependency-name: filelock
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2021-09-28 14:18:17 +05:45
dependabot[bot]andSaugat Pachhai 19284b3b4c build(deps): Bump urllib3 from 1.26.6 to 1.26.7 (#6697)
* build(deps): Bump urllib3 from 1.26.6 to 1.26.7

Bumps [urllib3](https://github.com/urllib3/urllib3) from 1.26.6 to 1.26.7.
- [Release notes](https://github.com/urllib3/urllib3/releases)
- [Changelog](https://github.com/urllib3/urllib3/blob/main/CHANGES.rst)
- [Commits](https://github.com/urllib3/urllib3/compare/1.26.6...1.26.7)

---
updated-dependencies:
- dependency-name: urllib3
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>

* Get rid of urllib3 as a test dependency

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Saugat Pachhai <[email protected]>
2021-09-28 13:52:02 +05:45
dependabot[bot] 315d1cde99 build(deps): Bump pytest-xdist from 2.3.0 to 2.4.0 (#6696)
Bumps [pytest-xdist](https://github.com/pytest-dev/pytest-xdist) from 2.3.0 to 2.4.0.
- [Release notes](https://github.com/pytest-dev/pytest-xdist/releases)
- [Changelog](https://github.com/pytest-dev/pytest-xdist/blob/master/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest-xdist/compare/v2.3.0...v2.4.0)

---
updated-dependencies:
- dependency-name: pytest-xdist
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2021-09-28 07:50:59 +00:00
dependabot[bot] 1d415efd0b build(deps): Bump google-cloud-storage from 1.42.1 to 1.42.2 (#6635)
Bumps [google-cloud-storage](https://github.com/googleapis/python-storage) from 1.42.1 to 1.42.2.
- [Release notes](https://github.com/googleapis/python-storage/releases)
- [Changelog](https://github.com/googleapis/python-storage/blob/main/CHANGELOG.md)
- [Commits](https://github.com/googleapis/python-storage/compare/v1.42.1...v1.42.2)

---
updated-dependencies:
- dependency-name: google-cloud-storage
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2021-09-28 13:12:18 +05:45
Saugat Pachhai e7c20aa1d8 better exception messages for schema errors (#6679)
* Generate prettier schema error messages

* add test for #6285
2021-09-28 11:12:16 +05:45
Saugat Pachhai 058377f33e ui: support pager universally (#6692) 2021-09-27 18:11:20 +05:45
Saugat Pachhai c7b1b14905 ui: use ui.rich_text instead of rich.text.Text (#6690) 2021-09-27 12:04:19 +05:45
Amey Kulkarni fbd8f5c185 Issue 6651: Added alias ls for dvc list (#6683) 2021-09-25 21:14:11 +03:00
whysage 7fe370b729 remote: add support for Amazon S3 timeout configuration (#6634)
Fixes #6241
2021-09-25 14:06:43 +03:00
Batuhan Taskaya f9df6d2a16 http: allow reading proxies from the current environment; (#6688) 2021-09-25 11:32:44 +02:00
Ruslan Kuprieiev 2e4fb376da system: get rid of speedcopy (#6686)
speedcopy only patches shutil.copyfile, which we don't even use
anywhere because it lacks callbacks/progress and we instead use
our own copyfile implementation, so this is totally useless for
us and can be removed.
2021-09-25 04:42:45 +03:00
Ruslan Kuprieiev 6d6a3f17b1 system: remove legacy code (#6685) 2021-09-25 03:04:54 +03:00
Ruslan Kuprieiev bdaf4aced6 state: cleanup redundant or localfs-specific logic (#6684)
Pre-requisite for making state work with other filesystems.
2021-09-25 02:11:35 +03:00
Batuhan Taskaya 0bf1802d4b ssh: fix path normalization on Windows (#6517) 2021-09-23 18:23:40 +03:00
Batuhan Taskaya 6d3045320b ssh: use a docker-based testing environment (#6677) 2021-09-23 16:00:48 +03:00
Batuhan Taskaya 3469dda8b8 ssh: bundle bcrypt by default (#6678) 2021-09-23 11:00:13 +02:00
Saugat Pachhai eefede92b2 merge yaml parsing and schema validation into one, aka strictyaml.load (#6661) 2021-09-23 00:03:25 +03:00
Ruslan Kuprieiev e295434ec6 checkout: start switching to obj-based workflow (#6648)
* webhdfs: info/checksum: properly raise FileNotFoundError

* checkout: start switching to obj-based workflow

Related #6594
2021-09-22 02:16:29 +03:00
Saugat Pachhai b1f1b01ffc debug: add yappi, callgrind output support (#6664)
* debug: add yappi, callgrind output support

* support custom path and callables
2021-09-21 20:33:08 +03:00
Casper da Costa-Luis f41d7effdb fix dvc[all] (#6657)
* fix dvc[all]

- related https://github.com/iterative/dvc-snap/issues/24

* fix pylint
2021-09-21 18:54:55 +03:00
Saugat Pachhai 6a417885b8 exceptional exceptions (#6654)
* exceptional exceptions

* backward compatibility with previous exceptions

* make linters happy :)
2021-09-21 11:27:57 +05:45
pre-commit-ci[bot] 4221d9f70b [pre-commit.ci] pre-commit autoupdate (#6659)
updates:
- [github.com/ambv/black: 21.8b0 → 21.9b0](https://github.com/ambv/black/compare/21.8b0...21.9b0)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
2021-09-21 09:28:51 +05:45
Ruslan Kuprieiev 5822d53687 tests: upgrade azurite
```
2021-09-21T00:15:31.6789059Z ____________________ ERROR at setup of test_get_url[azure] _____________________
2021-09-21T00:15:31.6790443Z [gw0] linux -- Python 3.7.12 /opt/hostedtoolcache/Python/3.7.12/x64/bin/python
2021-09-21T00:15:31.6791202Z 
2021-09-21T00:15:31.6792291Z request = <FixtureRequest for <Function test_get_url[azure]>>
2021-09-21T00:15:31.6793561Z 
2021-09-21T00:15:31.6794120Z     def fill(request):
2021-09-21T00:15:31.6794792Z         item = request._pyfuncitem
2021-09-21T00:15:31.6795627Z         fixturenames = getattr(item, "fixturenames", None)
2021-09-21T00:15:31.6797090Z         if fixturenames is None:
2021-09-21T00:15:31.6797922Z             fixturenames = request.fixturenames
2021-09-21T00:15:31.6798497Z     
2021-09-21T00:15:31.6799393Z         if hasattr(item, 'callspec'):
2021-09-21T00:15:31.6800256Z             for param, val in sorted_by_dependency(item.callspec.params, fixturenames):
2021-09-21T00:15:31.6801309Z                 if val is not None and is_lazy_fixture(val):
2021-09-21T00:15:31.6802233Z >                   item.callspec.params[param] = request.getfixturevalue(val.name)
2021-09-21T00:15:31.6802912Z 
2021-09-21T00:15:31.6803937Z /opt/hostedtoolcache/Python/3.7.12/x64/lib/python3.7/site-packages/pytest_lazyfixture.py:35: 
2021-09-21T00:15:31.6804952Z _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
2021-09-21T00:15:31.6806085Z /home/runner/work/dvc/dvc/tests/remotes/azure.py:102: in azure
2021-09-21T00:15:31.6807090Z     container.get_container_properties()
2021-09-21T00:15:31.6808748Z /opt/hostedtoolcache/Python/3.7.12/x64/lib/python3.7/site-packages/azure/core/tracing/decorator.py:83: in wrapper_use_tracer
2021-09-21T00:15:31.6822551Z     return func(*args, **kwargs)
2021-09-21T00:15:31.6824143Z /opt/hostedtoolcache/Python/3.7.12/x64/lib/python3.7/site-packages/azure/storage/blob/_container_client.py:497: in get_container_properties
2021-09-21T00:15:31.6825038Z     process_storage_error(error)
2021-09-21T00:15:31.6825652Z _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
2021-09-21T00:15:31.6825908Z 
2021-09-21T00:15:31.6826916Z storage_error = HttpResponseError("Operation returned an invalid status 'The value for one of the HTTP headers is not in the correct format.'")
2021-09-21T00:15:31.6827586Z 
2021-09-21T00:15:31.6828351Z     def process_storage_error(storage_error):   # pylint:disable=too-many-statements
2021-09-21T00:15:31.6829086Z         raise_error = HttpResponseError
2021-09-21T00:15:31.6829597Z         serialized = False
2021-09-21T00:15:31.6830066Z         if not storage_error.response:
2021-09-21T00:15:31.6830554Z             raise storage_error
2021-09-21T00:15:31.6831558Z         # If it is one of those three then it has been serialized prior by the generated layer.
2021-09-21T00:15:31.6832480Z         if isinstance(storage_error, (PartialBatchErrorException,
2021-09-21T00:15:31.6833636Z                                       ClientAuthenticationError, ResourceNotFoundError, ResourceExistsError)):
2021-09-21T00:15:31.6834687Z             serialized = True
2021-09-21T00:15:31.6835753Z         error_code = storage_error.response.headers.get('x-ms-error-code')
2021-09-21T00:15:31.6836524Z         error_message = storage_error.message
2021-09-21T00:15:31.6837001Z         additional_data = {}
2021-09-21T00:15:31.6837398Z         error_dict = {}
2021-09-21T00:15:31.6837739Z         try:
2021-09-21T00:15:31.6838506Z             error_body = ContentDecodePolicy.deserialize_from_http_generics(storage_error.response)
2021-09-21T00:15:31.6839345Z             # If it is an XML response
2021-09-21T00:15:31.6839837Z             if isinstance(error_body, Element):
2021-09-21T00:15:31.6840285Z                 error_dict = {
2021-09-21T00:15:31.6840750Z                     child.tag.lower(): child.text
2021-09-21T00:15:31.6841435Z                     for child in error_body
2021-09-21T00:15:31.6841822Z                 }
2021-09-21T00:15:31.6842195Z             # If it is a JSON response
2021-09-21T00:15:31.6842692Z             elif isinstance(error_body, dict):
2021-09-21T00:15:31.6843413Z                 error_dict = error_body.get('error', {})
2021-09-21T00:15:31.6843893Z             elif not error_code:
2021-09-21T00:15:31.6844347Z                 _LOGGER.warning(
2021-09-21T00:15:31.6845611Z                     'Unexpected return type % from ContentDecodePolicy.deserialize_from_http_generics.', type(error_body))
2021-09-21T00:15:31.6846887Z                 error_dict = {'message': str(error_body)}
2021-09-21T00:15:31.6847294Z     
2021-09-21T00:15:31.6847730Z             # If we extracted from a Json or XML response
2021-09-21T00:15:31.6848205Z             if error_dict:
2021-09-21T00:15:31.6848792Z                 error_code = error_dict.get('code')
2021-09-21T00:15:31.6849704Z                 error_message = error_dict.get('message')
2021-09-21T00:15:31.6850578Z                 additional_data = {k: v for k, v in error_dict.items() if k not in {'code', 'message'}}
2021-09-21T00:15:31.6851392Z         except DecodeError:
2021-09-21T00:15:31.6851801Z             pass
2021-09-21T00:15:31.6852290Z     
2021-09-21T00:15:31.6852601Z         try:
2021-09-21T00:15:31.6853156Z             # This check would be unnecessary if we have already serialized the error
2021-09-21T00:15:31.6853821Z             if error_code and not serialized:
2021-09-21T00:15:31.6854423Z                 error_code = StorageErrorCode(error_code)
2021-09-21T00:15:31.6855164Z                 if error_code in [StorageErrorCode.condition_not_met,
2021-09-21T00:15:31.6856229Z                                   StorageErrorCode.blob_overwritten]:
2021-09-21T00:15:31.6856938Z                     raise_error = ResourceModifiedError
2021-09-21T00:15:31.6857739Z                 if error_code in [StorageErrorCode.invalid_authentication_info,
2021-09-21T00:15:31.6858641Z                                   StorageErrorCode.authentication_failed]:
2021-09-21T00:15:31.6859468Z                     raise_error = ClientAuthenticationError
2021-09-21T00:15:31.6860256Z                 if error_code in [StorageErrorCode.resource_not_found,
2021-09-21T00:15:31.6861256Z                                   StorageErrorCode.cannot_verify_copy_source,
2021-09-21T00:15:31.6861998Z                                   StorageErrorCode.blob_not_found,
2021-09-21T00:15:31.6862716Z                                   StorageErrorCode.queue_not_found,
2021-09-21T00:15:31.6863718Z                                   StorageErrorCode.container_not_found,
2021-09-21T00:15:31.6864526Z                                   StorageErrorCode.parent_not_found,
2021-09-21T00:15:31.6865432Z                                   StorageErrorCode.share_not_found]:
2021-09-21T00:15:31.6866549Z                     raise_error = ResourceNotFoundError
2021-09-21T00:15:31.6867609Z                 if error_code in [StorageErrorCode.account_already_exists,
2021-09-21T00:15:31.6868499Z                                   StorageErrorCode.account_being_created,
2021-09-21T00:15:31.6869383Z                                   StorageErrorCode.resource_already_exists,
2021-09-21T00:15:31.6870728Z                                   StorageErrorCode.resource_type_mismatch,
2021-09-21T00:15:31.6871688Z                                   StorageErrorCode.blob_already_exists,
2021-09-21T00:15:31.6872429Z                                   StorageErrorCode.queue_already_exists,
2021-09-21T00:15:31.6873252Z                                   StorageErrorCode.container_already_exists,
2021-09-21T00:15:31.6874124Z                                   StorageErrorCode.container_being_deleted,
2021-09-21T00:15:31.6874922Z                                   StorageErrorCode.queue_being_deleted,
2021-09-21T00:15:31.6875857Z                                   StorageErrorCode.share_already_exists,
2021-09-21T00:15:31.6876608Z                                   StorageErrorCode.share_being_deleted]:
2021-09-21T00:15:31.6877289Z                     raise_error = ResourceExistsError
2021-09-21T00:15:31.6877807Z         except ValueError:
2021-09-21T00:15:31.6878259Z             # Got an unknown error code
2021-09-21T00:15:31.6878648Z             pass
2021-09-21T00:15:31.6878942Z     
2021-09-21T00:15:31.6879424Z         # Error message should include all the error properties
2021-09-21T00:15:31.6879908Z         try:
2021-09-21T00:15:31.6880416Z             error_message += "\nErrorCode:{}".format(error_code.value)
2021-09-21T00:15:31.6881289Z         except AttributeError:
2021-09-21T00:15:31.6883082Z             error_message += "\nErrorCode:{}".format(error_code)
2021-09-21T00:15:31.6883807Z         for name, info in additional_data.items():
2021-09-21T00:15:31.6884446Z             error_message += "\n{}:{}".format(name, info)
2021-09-21T00:15:31.6884932Z     
2021-09-21T00:15:31.6885741Z         # No need to create an instance if it has already been serialized by the generated layer
2021-09-21T00:15:31.6886538Z         if serialized:
2021-09-21T00:15:31.6887019Z             storage_error.message = error_message
2021-09-21T00:15:31.6887526Z             error = storage_error
2021-09-21T00:15:31.6887908Z         else:
2021-09-21T00:15:31.6888499Z             error = raise_error(message=error_message, response=storage_error.response)
2021-09-21T00:15:31.6889380Z         # Ensure these properties are stored in the error instance as well (not just the error message)
2021-09-21T00:15:31.6890078Z         error.error_code = error_code
2021-09-21T00:15:31.6890630Z         error.additional_info = additional_data
2021-09-21T00:15:31.6891956Z         # error.args is what's surfaced on the traceback - show error message in all cases
2021-09-21T00:15:31.6892672Z         error.args = (error.message,)
2021-09-21T00:15:31.6893112Z         try:
2021-09-21T00:15:31.6893784Z             # `from None` prevents us from double printing the exception (suppresses generated layer error context)
2021-09-21T00:15:31.6894873Z >           exec("raise error from None")   # pylint: disable=exec-used # nosec
2021-09-21T00:15:31.6896126Z E           azure.core.exceptions.HttpResponseError: The value for one of the HTTP headers is not in the correct format.
2021-09-21T00:15:31.6897385Z E           RequestId:d83b8102-bde1-4a77-aa7a-b67bbc2c4a80
2021-09-21T00:15:31.6898080Z E           Time:2021-09-21T00:09:53.815Z
2021-09-21T00:15:31.6898578Z E           ErrorCode:InvalidHeaderValue
2021-09-21T00:15:31.6899259Z E           headername:x-ms-version
2021-09-21T00:15:31.6900066Z E           headervalue:2020-10-02
2021-09-21T00:15:31.6900355Z 
2021-09-21T00:15:31.6901781Z /opt/hostedtoolcache/Python/3.7.12/x64/lib/python3.7/site-packages/azure/storage/blob/_shared/response_handlers.py:177: HttpResponseError
```
2021-09-21 03:53:06 +03:00
Batuhan Taskaya a478a0ea98 progress: ignore when set_size callback is called with None (#6612) 2021-09-21 03:34:17 +03:00
Ruslan Kuprieiev e81c88e501 gha: increase timeouts (#6645) 2021-09-19 23:47:15 +03:00
b286c311f4 reincorporate PR 6111 into current master, re: #4420 (#6419)
* rebased PR 6111 onto master

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* use make_tmp_dir fixture in tests

Co-authored-by: U119511 <[email protected]>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Alexander Meier <[email protected]>
Co-authored-by: meierale <[email protected]>
2021-09-18 22:36:50 +03:00
344 changed files with 10902 additions and 12076 deletions
+23
View File
@@ -0,0 +1,23 @@
name: benchmarks
on: [pull_request, workflow_dispatch]
jobs:
bench:
name: run benchmarks
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
os: [ubuntu-18.04]
steps:
- name: Cancel Previous Runs
uses: styfle/[email protected]
with:
access_token: ${{ github.token }}
- uses: actions/setup-python@v2
with:
python-version: 3.7
- uses: iterative/dvc-bench@master
with:
pytest_options: "-k 'test_init or test_help'"
+26 -14
View File
@@ -10,11 +10,13 @@ jobs:
deb:
runs-on: ubuntu-18.04
steps:
- uses: actions/checkout@v2.3.4
- name: Set up Python 3.8
- uses: actions/checkout@v2.4.0
with:
fetch-depth: 0
- name: Set up Python 3.9
uses: actions/[email protected]
with:
python-version: 3.8
python-version: 3.9
- name: Set up Ruby 2.4
uses: actions/[email protected]
with:
@@ -39,11 +41,13 @@ jobs:
rpm:
runs-on: ubuntu-18.04
steps:
- uses: actions/checkout@v2.3.4
- name: Set up Python 3.8
- uses: actions/checkout@v2.4.0
with:
fetch-depth: 0
- name: Set up Python 3.9
uses: actions/[email protected]
with:
python-version: 3.8
python-version: 3.9
- name: Set up Ruby 2.4
uses: actions/[email protected]
with:
@@ -68,11 +72,13 @@ jobs:
osxpkg:
runs-on: macos-10.15
steps:
- uses: actions/checkout@v2.3.4
- name: Set up Python 3.8
- uses: actions/checkout@v2.4.0
with:
fetch-depth: 0
- name: Set up Python 3.9
uses: actions/[email protected]
with:
python-version: 3.8
python-version: 3.9
- name: Set up Ruby 2.4
uses: actions/[email protected]
with:
@@ -100,11 +106,13 @@ jobs:
exe:
runs-on: windows-2019
steps:
- uses: actions/checkout@v2.3.4
- name: Set up Python 3.8
- uses: actions/checkout@v2.4.0
with:
fetch-depth: 0
- name: Set up Python 3.9
uses: actions/[email protected]
with:
python-version: 3.8
python-version: 3.9
- name: Install deps
run: |
pip install .[all]
@@ -128,7 +136,9 @@ jobs:
pip:
runs-on: ubuntu-18.04
steps:
- uses: actions/checkout@v2.3.4
- uses: actions/checkout@v2.4.0
with:
fetch-depth: 0
- name: Set up Python 3.7
uses: actions/[email protected]
with:
@@ -136,7 +146,9 @@ jobs:
- name: Install
run: pip install ".[all,tests]"
- name: Build packages
run: ./scripts/build_package.sh
run: |
pip install -U pip
./scripts/build_package.sh
- name: Publish packages to PyPI
if: github.event_name == 'release'
uses: pypa/gh-action-pypi-publish@master
+20 -54
View File
@@ -16,19 +16,21 @@ jobs:
timeout-minutes: 10
runs-on: ubuntu-latest
steps:
- uses: actions/[email protected]
- name: Cancel Previous Runs
uses: styfle/[email protected]
with:
access_token: ${{ github.token }}
- uses: actions/[email protected]
with:
fetch-depth: 0
- name: Set up Python 3.8
uses: actions/[email protected]
with:
python-version: 3.8
- name: Install requirements
run: |
pip install wheel
pip install ".[all,tests,terraform]" Pygments collective.checkdocs pre-commit
- name: install temporary dependencies
run: |
pip install git+https://github.com/isidentical/gdrivefs@service-account
pip install git+https://github.com/isidentical/pydata-google-auth@service-account
pip install --upgrade pip setuptools wheel
pip install ".[dev]" pre-commit
- name: Check README
run: python setup.py checkdocs
- uses: pre-commit/[email protected]
@@ -38,19 +40,12 @@ jobs:
strategy:
fail-fast: false
matrix:
os: [ubuntu-18.04, windows-2019, macos-10.15]
pyv: ["3.6", "3.7", "3.8", "3.9"]
include:
- os: "macos-10.15"
pyv: "3.10.0-rc.1"
exclude:
- os: macos-10.15
pyv: "3.9"
- os: macos-10.15
pyv: "3.7"
os: [ubuntu-20.04, windows-latest, macos-latest]
pyv: ["3.7", "3.8", "3.9", "3.10"]
steps:
- uses: actions/checkout@v2.3.4
- uses: actions/checkout@v2.4.0
with:
fetch-depth: 0
- name: Set up Python
uses: actions/[email protected]
with:
@@ -61,56 +56,27 @@ jobs:
echo "::set-output name=dir::$(pip cache dir)"
- name: set pip cache
id: pip-cache
uses: actions/[email protected].6
uses: actions/[email protected].7
with:
path: ${{ steps.pip-cache-dir.outputs.dir }}
key: ${{ runner.os }}-pip-${{ hashFiles('setup.py') }}
key: ${{ runner.os }}-pip-${{ hashFiles('setup.cfg') }}
restore-keys: |
${{ runner.os }}-pip-
- name: install libgit2 on Python3.10 in macOS
if: matrix.pyv == '3.10.0-rc.1' && matrix.os == 'macos-10.15'
run: |
brew install libgit2
- name: install
if: steps.cache.pip-cache-dir.cache-hit != 'true'
run: |
pip install --upgrade pip setuptools wheel
pip install -e ".[all,tests,terraform]"
- name: install temporary dependencies
run: |
pip install git+https://github.com/isidentical/gdrivefs@service-account
pip install git+https://github.com/isidentical/pydata-google-auth@service-account
pip install -e ".[dev]"
- name: setup git
run: |
git config --global user.email "[email protected]"
git config --global user.name "DVC Tester"
- name: setup gs creds
shell: bash
env:
GS_CREDS_JSON: ${{ secrets.GS_CREDS_JSON }}
if: env.GS_CREDS_JSON != ''
run: |
mkdir -p scripts/ci
echo "$GS_CREDS_JSON" > scripts/ci/gcp-creds.json
- name: disable gdrive tests
if: >-
github.event_name != 'schedule' &&
(matrix.pyv != '3.8' || matrix.os != 'ubuntu-18.04')
run: |
echo "extra_test_args=--disable-gdrive" >> $GITHUB_ENV
- name: run tests
timeout-minutes: 30
env:
GDRIVE_CREDENTIALS_DATA: ${{ secrets.GDRIVE_CREDENTIALS_DATA }}
AWS_ACCESS_KEY_ID: ${{ secrets.AWS_ACCESS_KEY_ID }}
AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_SECRET_ACCESS_KEY }}
OSS_ACCESS_KEY_ID: ${{ secrets.OSS_ACCESS_KEY_ID}}
OSS_ACCESS_KEY_SECRET: ${{ secrets.OSS_ACCESS_KEY_SECRET}}
OSS_ENDPOINT: ${{ secrets.OSS_ENDPOINT}}
timeout-minutes: 40
run: >-
python -m tests -n=4
python -m tests -n=auto
--cov-report=xml --cov-report=term
--all ${{ env.extra_test_args }}
${{ env.extra_test_args }}
- name: upload coverage report
uses: codecov/[email protected]
with:
+2
View File
@@ -13,6 +13,7 @@ build/
dist/
*.egg-info/
.eggs
hooks/*.pyc
@@ -38,3 +39,4 @@ scripts/ci/gcp-creds.json
.gcp-creds.json
*~
/dvc/_dvc_version.py
+16 -16
View File
@@ -1,24 +1,29 @@
ci:
skip: [pylint, dvc-pre-commit]
skip: [mypy, pylint, dvc-pre-commit]
repos:
- hooks:
- id: black
language_version: python3
repo: https://github.com/ambv/black
rev: 21.8b0
rev: 21.12b0
- repo: https://github.com/pre-commit/pre-commit-hooks
rev: v4.0.1
hooks:
- id: check-toml
- id: check-yaml
- hooks:
- id: codespell
args:
- --ignore-words-list
- ba,datas,fo,uptodate
- ba,datas,fo,uptodate,cachable
repo: https://github.com/codespell-project/codespell
rev: v2.1.0
- hooks:
- id: isort
language_version: python3
repo: https://github.com/timothycrosley/isort
rev: 5.9.3
rev: 5.10.1
- hooks:
- id: flake8
language_version: python3
@@ -29,19 +34,14 @@ repos:
- flake8-string-format
repo: https://gitlab.com/pycqa/flake8
rev: 3.9.2
- hooks:
- id: mypy
language_version: python3
files: ^dvc/
additional_dependencies:
- types-requests
- types-paramiko
- types-tabulate
- types-toml
repo: https://github.com/pre-commit/mirrors-mypy
rev: 'v0.910'
- repo: local
hooks:
- id: mypy
name: mypy
entry: mypy
files: ^dvc/
language: system
types: [python]
- id: pylint
name: pylint
entry: pylint
@@ -54,7 +54,7 @@ repos:
id: beautysh
language_version: python3
repo: https://github.com/lovesegfault/beautysh
rev: v6.1.0
rev: v6.2.1
- hooks:
- args:
- git-hook
-615
View File
@@ -1,615 +0,0 @@
[MASTER]
# A comma-separated list of package or module names from where C extensions may
# be loaded. Extensions are loading into the active Python interpreter and may
# run arbitrary code.
extension-pkg-whitelist=pygit2
# Add files or directories to the blacklist. They should be base names, not
# paths.
ignore=CVS
# Add files or directories matching the regex patterns to the blacklist. The
# regex matches against base names, not paths.
ignore-patterns=
# Python code to execute, usually for sys.path manipulation such as
# pygtk.require().
init-hook="import sys;
from pathlib import Path;
from pylint.config import find_pylintrc;
tests_folder = Path(find_pylintrc()).parent / 'tests'
sys.path.append(str(tests_folder));
"
# Use multiple processes to speed up Pylint. Specifying 0 will auto-detect the
# number of processors available to use.
jobs=1
# Control the amount of potential inferred values when inferring a single
# object. This can help the performance when dealing with large functions or
# complex, nested conditions.
limit-inference-results=100
# List of plugins (as comma separated values of python modules names) to load,
# usually to register additional checkers.
load-plugins=pylint_pytest,pylint_plugin_disable
# Pickle collected data for later comparisons.
persistent=yes
# Specify a configuration file.
#rcfile=
# When enabled, pylint would attempt to guess common misconfiguration and emit
# user-friendly hints instead of false-positive error messages.
suggestion-mode=yes
# Allow loading of arbitrary C extensions. Extensions are imported into the
# active Python interpreter and may run arbitrary code.
unsafe-load-any-extension=no
[MESSAGES CONTROL]
# Only show warnings with the listed confidence levels. Leave empty to show
# all. Valid levels: HIGH, INFERENCE, INFERENCE_FAILURE, UNDEFINED.
confidence=
# Disable the message, report, category or checker with the given id(s). You
# can either give multiple identifiers separated by comma (,) or put this
# option multiple times (only on the command line, not in the configuration
# file where it should appear only once). You can also use "--disable=all" to
# disable everything first and then reenable specific checks. For example, if
# you want to run only the similarities checker, you can use "--disable=all
# --enable=similarities". If you want to run only the classes checker, but have
# no Warning level messages displayed, use "--disable=all --enable=classes
# --disable=W".
disable=format,
# ^ most of them are covered by flake8,
# and are conventions rather than warnings or errors
refactoring, # will be noisy if it starts giving suggestions
spelling,
# design is too-few-* and too-many-* checks, too-much-* for us right now
design,
# following were generated by default
# most of them are redundant Py3 checks for Py2+3 codebase
print-statement,
parameter-unpacking,
unpacking-in-except,
old-raise-syntax,
backtick,
long-suffix,
old-ne-operator,
old-octal-literal,
import-star-module-level,
non-ascii-bytes-literal,
raw-checker-failed,
bad-inline-option,
locally-disabled,
file-ignored,
suppressed-message,
useless-suppression,
deprecated-pragma,
use-symbolic-message-instead,
apply-builtin,
basestring-builtin,
buffer-builtin,
cmp-builtin,
coerce-builtin,
execfile-builtin,
file-builtin,
long-builtin,
raw_input-builtin,
reduce-builtin,
standarderror-builtin,
unicode-builtin,
xrange-builtin,
coerce-method,
delslice-method,
getslice-method,
setslice-method,
no-absolute-import,
old-division,
dict-iter-method,
dict-view-method,
next-method-called,
metaclass-assignment,
indexing-exception,
raising-string,
reload-builtin,
oct-method,
hex-method,
nonzero-method,
cmp-method,
input-builtin,
round-builtin,
intern-builtin,
unichr-builtin,
map-builtin-not-iterating,
zip-builtin-not-iterating,
range-builtin-not-iterating,
filter-builtin-not-iterating,
using-cmp-argument,
eq-without-hash,
div-method,
idiv-method,
rdiv-method,
exception-message-attribute,
invalid-str-codec,
sys-max-int,
bad-python3-import,
deprecated-string-function,
deprecated-str-translate-call,
deprecated-itertools-function,
deprecated-types-field,
next-method-defined,
dict-items-not-iterating,
dict-keys-not-iterating,
dict-values-not-iterating,
deprecated-operator-function,
deprecated-urllib-function,
xreadlines-attribute,
deprecated-sys-function,
exception-escape,
comprehension-escape,
# custom disables start here
no-self-use,
invalid-name,
# already a check enabled for `wildcard-import`
unused-wildcard-import,
misplaced-comparison-constant,
# probably soon: https://github.com/iterative/dvc/issues/1843
logging-format-interpolation,
logging-fstring-interpolation,
# we don't have proper docstrings yet
# even if we do, we'll be doing it gradually
missing-function-docstring,
missing-module-docstring,
missing-class-docstring,
duplicate-code,
# too noisy, and detects issues even when import is inside a function
# see: https://github.com/PyCQA/pylint/issues/850
cyclic-import,
# isort should cover these:
wrong-import-order,
wrong-import-position,
ungrouped-imports,
multiple-imports,
# we use it to speedup/optimize
import-outside-toplevel,
fixme,
# we use cause of the exception for error message output
# so some of the times we don't use `raise from` to not show the cause
# of the error
raise-missing-from,
# Enable the message, report, category or checker with the given id(s). You can
# either give multiple identifier separated by comma (,) or put this option
# multiple time (only on the command line, not in the configuration file where
# it should appear only once). See also the "--disable" option for examples.
enable=c-extension-no-member,
no-else-return,
[REPORTS]
# Python expression which should return a note less than 10 (10 is the highest
# note). You have access to the variables errors warning, statement which
# respectively contain the number of errors / warnings messages and the total
# number of statements analyzed. This is used by the global evaluation report
# (RP0004).
evaluation=10.0 - ((float(5 * error + warning + refactor + convention) / statement) * 10)
# Template used to display messages. This is a python new-style format string
# used to format the message information. See doc for all details.
#msg-template=
# Set the output format. Available formats are text, parseable, colorized, json
# and msvs (visual studio). You can also give a reporter class, e.g.
# mypackage.mymodule.MyReporterClass.
output-format=text
# Tells whether to display a full report or only the messages.
reports=no
# Activate the evaluation score.
score=yes
[REFACTORING]
# Maximum number of nested blocks for function / method body
max-nested-blocks=5
# Complete name of functions that never returns. When checking for
# inconsistent-return-statements if a never returning function is called then
# it will be considered as an explicit return statement and no message will be
# printed.
never-returning-functions=sys.exit
[LOGGING]
# Format style used to check logging format string. `old` means using %
# formatting, while `new` is for `{}` formatting.
logging-format-style=old
# Logging modules to check that the string format arguments are in logging
# function parameter format.
logging-modules=logging
[SPELLING]
# Limits count of emitted suggestions for spelling mistakes.
max-spelling-suggestions=4
# Spelling dictionary name. Available dictionaries: none. To make it working
# install python-enchant package..
spelling-dict=
# List of comma separated words that should not be checked.
spelling-ignore-words=
# A path to a file that contains private dictionary; one word per line.
spelling-private-dict-file=
# Tells whether to store unknown words to indicated private dictionary in
# --spelling-private-dict-file option instead of raising a message.
spelling-store-unknown-words=no
[TYPECHECK]
# List of decorators that produce context managers, such as
# contextlib.contextmanager. Add to this list to register other decorators that
# produce valid context managers.
contextmanager-decorators=contextlib.contextmanager
# List of members which are set dynamically and missed by pylint inference
# system, and so shouldn't trigger E1101 when accessed. Python regular
# expressions are accepted.
generated-members=hdfs.*,pytest.lazy_fixture,logging.TRACE,logger.trace,sys.getwindowsversion
# Tells whether missing members accessed in mixin class should be ignored. A
# mixin class is detected if its name ends with "mixin" (case insensitive).
ignore-mixin-members=yes
# Tells whether to warn about missing members when the owner of the attribute
# is inferred to be None.
ignore-none=yes
# This flag controls whether pylint should warn about no-member and similar
# checks whenever an opaque object is returned when inferring. The inference
# can return multiple potential results while evaluating a Python object, but
# some branches might not be evaluated, which results in partial inference. In
# that case, it might be useful to still emit no-member and other checks for
# the rest of the inferred objects.
ignore-on-opaque-inference=yes
# List of class names for which member attributes should not be checked (useful
# for classes with dynamically set attributes). This supports the use of
# qualified names.
ignored-classes=optparse.Values,thread._local,_thread._local,Dvcfile
# List of module names for which member attributes should not be checked
# (useful for modules/projects where namespaces are manipulated during runtime
# and thus existing member attributes cannot be deduced by static analysis. It
# supports qualified module names, as well as Unix pattern matching.
ignored-modules=azure
# Show a hint with possible names when a member name was not found. The aspect
# of finding the hint is based on edit distance.
missing-member-hint=yes
# The minimum edit distance a name should have in order to be considered a
# similar match for a missing member name.
missing-member-hint-distance=1
# The total number of similar names that should be taken in consideration when
# showing a hint for a missing member.
missing-member-max-choices=1
signature-mutators=funcy.decorators.decorator,
[VARIABLES]
# List of additional names supposed to be defined in builtins. Remember that
# you should avoid defining new builtins when possible.
additional-builtins=
# Tells whether unused global variables should be treated as a violation.
allow-global-unused-variables=yes
# List of strings which can identify a callback function by name. A callback
# name must start or end with one of those strings.
callbacks=cb_,
_cb
# A regular expression matching the name of dummy variables (i.e. expected to
# not be used).
dummy-variables-rgx=_+$|(_[a-zA-Z0-9_]*[a-zA-Z0-9]+?$)|dummy|^ignored_|^unused_
# Argument names that match this expression will be ignored. Default to name
# with leading underscore.
ignored-argument-names=_.*|^ignored_|^unused_|args|kwargs
# Tells whether we should check for unused import in __init__ files.
init-import=no
# List of qualified module names which can have objects that can redefine
# builtins.
redefining-builtins-modules=six.moves,past.builtins,future.builtins,builtins,io
[FORMAT]
# Expected format of line ending, e.g. empty (any line ending), LF or CRLF.
expected-line-ending-format=
# Regexp for a line that is allowed to be longer than the limit.
ignore-long-lines=^\s*(# )?<?https?://\S+>?$
# Number of spaces of indent required inside a hanging or continued line.
indent-after-paren=4
# String used as indentation unit. This is usually " " (4 spaces) or "\t" (1
# tab).
indent-string=' '
# Maximum number of characters on a single line.
max-line-length=79
# Maximum number of lines in a module.
max-module-lines=1000
# List of optional constructs for which whitespace checking is disabled. `dict-
# separator` is used to allow tabulation in dicts, etc.: {1 : 1,\n222: 2}.
# `trailing-comma` allows a space between comma and closing bracket: (a, ).
# `empty-line` allows space-only lines.
no-space-check=trailing-comma,
dict-separator
# Allow the body of a class to be on the same line as the declaration if body
# contains single statement.
single-line-class-stmt=no
# Allow the body of an if to be on the same line as the test if there is no
# else.
single-line-if-stmt=no
[BASIC]
# Naming style matching correct argument names.
argument-naming-style=snake_case
# Regular expression matching correct argument names. Overrides argument-
# naming-style.
#argument-rgx=
# Naming style matching correct attribute names.
attr-naming-style=snake_case
# Regular expression matching correct attribute names. Overrides attr-naming-
# style.
#attr-rgx=
# Bad variable names which should always be refused, separated by a comma.
bad-names=foo,
bar,
baz,
toto,
tutu,
tata
# Naming style matching correct class attribute names.
class-attribute-naming-style=any
# Regular expression matching correct class attribute names. Overrides class-
# attribute-naming-style.
#class-attribute-rgx=
# Naming style matching correct class names.
class-naming-style=PascalCase
# Regular expression matching correct class names. Overrides class-naming-
# style.
#class-rgx=
# Naming style matching correct constant names.
const-naming-style=UPPER_CASE
# Regular expression matching correct constant names. Overrides const-naming-
# style.
#const-rgx=
# Minimum line length for functions/classes that require docstrings, shorter
# ones are exempt.
docstring-min-length=-1
# Naming style matching correct function names.
function-naming-style=snake_case
# Regular expression matching correct function names. Overrides function-
# naming-style.
#function-rgx=
# Good variable names which should always be accepted, separated by a comma.
good-names=i,
j,
k,
ex,
Run,
_,
s3,
gs,
x, y,
x0, y0,
x1, y1,
dx, dy
# Include a hint for the correct naming format with invalid-name.
include-naming-hint=no
# Naming style matching correct inline iteration names.
inlinevar-naming-style=any
# Regular expression matching correct inline iteration names. Overrides
# inlinevar-naming-style.
#inlinevar-rgx=
# Naming style matching correct method names.
method-naming-style=snake_case
# Regular expression matching correct method names. Overrides method-naming-
# style.
#method-rgx=
# Naming style matching correct module names.
module-naming-style=snake_case
# Regular expression matching correct module names. Overrides module-naming-
# style.
#module-rgx=
# Colon-delimited sets of names that determine each other's naming style when
# the name regexes allow several styles.
name-group=
# Regular expression which should only match function or class names that do
# not require a docstring.
no-docstring-rgx=^_
# List of decorators that produce properties, such as abc.abstractproperty. Add
# to this list to register other decorators that produce valid properties.
# These decorators are taken in consideration only for invalid-name.
property-classes=abc.abstractproperty
# Naming style matching correct variable names.
variable-naming-style=snake_case
# Regular expression matching correct variable names. Overrides variable-
# naming-style.
#variable-rgx=
[SIMILARITIES]
# Ignore comments when computing similarities.
ignore-comments=yes
# Ignore docstrings when computing similarities.
ignore-docstrings=yes
# Ignore imports when computing similarities.
ignore-imports=no
# Minimum lines number of a similarity.
min-similarity-lines=4
[MISCELLANEOUS]
# List of note tags to take in consideration, separated by a comma.
notes=FIXME,
XXX,
TODO
[DESIGN]
# Maximum number of arguments for function / method.
max-args=5
# Maximum number of attributes for a class (see R0902).
max-attributes=7
# Maximum number of boolean expressions in an if statement.
max-bool-expr=5
# Maximum number of branch for function / method body.
max-branches=12
# Maximum number of locals for function / method body.
max-locals=15
# Maximum number of parents for a class (see R0901).
max-parents=7
# Maximum number of public methods for a class (see R0904).
max-public-methods=20
# Maximum number of return / yield for function / method body.
max-returns=6
# Maximum number of statements in function / method body.
max-statements=50
# Minimum number of public methods for a class (see R0903).
min-public-methods=2
[CLASSES]
# List of method names used to declare (i.e. assign) instance attributes.
defining-attr-methods=__init__,
__new__,
setUp
# List of member names, which should be excluded from the protected access
# warning.
exclude-protected=_asdict,
_fields,
_replace,
_source,
_make
# List of valid names for the first argument in a class method.
valid-classmethod-first-arg=cls
# List of valid names for the first argument in a metaclass class method.
valid-metaclass-classmethod-first-arg=cls
[IMPORTS]
# Allow wildcard imports from modules that define __all__.
allow-wildcard-with-all=no
# Analyse import fallback blocks. This can be used to support both Python 2 and
# 3 compatible code, which means that the block might have code that exists
# only in one or another interpreter, leading to false positives when analysed.
analyse-fallback-blocks=no
# Deprecated modules which should not be used, separated by a comma.
deprecated-modules=optparse,tkinter.tix
# Create a graph of external dependencies in the given file (report RP0402 must
# not be disabled).
ext-import-graph=
# Create a graph of every (i.e. internal and external) dependencies in the
# given file (report RP0402 must not be disabled).
import-graph=
# Create a graph of internal dependencies in the given file (report RP0402 must
# not be disabled).
int-import-graph=
# Force import order to recognize a module as part of the standard
# compatibility libraries.
known-standard-library=
# Force import order to recognize a module as part of a third party library.
known-third-party=enchant
[EXCEPTIONS]
# Exceptions that will emit a warning when being caught. Defaults to
# "Exception".
overgeneral-exceptions=Exception
+1 -1
View File
@@ -186,7 +186,7 @@
same "printed page" as the copyright notice for easier
identification within third-party archives.
Copyright {yyyy} {name of copyright owner}
Copyright 2017-2021 Iterative, Inc.
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
+1 -1
View File
@@ -1,3 +1,3 @@
include fastentrypoints.py
include LICENSE
recursive-include requirements *.txt
recursive-include dvc/repo/plots/templates *.json
+40 -1
View File
@@ -1,10 +1,39 @@
from contextlib import ExitStack, contextmanager
from typing import TYPE_CHECKING
from typing import TYPE_CHECKING, Callable, Union
if TYPE_CHECKING:
from argparse import Namespace
@contextmanager
def yappi_profile(
path: Union[Callable[[], str], str] = None, wall_clock: bool = True
):
try:
import yappi # pylint: disable=import-error
except ImportError:
print("Failed to run profiler, yappi is not installed")
yield
return
yappi.set_clock_type("wall" if wall_clock else "cpu")
yappi.start()
yield
yappi.stop()
# pylint:disable=no-member
if path:
stats = yappi.get_func_stats()
fpath = path() if callable(path) else path
stats.save(fpath, "callgrind")
else:
yappi.get_func_stats().print_all()
yappi.get_thread_stats().print_all()
yappi.clear_stats()
@contextmanager
def instrument(html_output=False):
"""Run a statistical profiler"""
@@ -70,6 +99,13 @@ def debugtools(args: "Namespace" = None, **kwargs):
stack.enter_context(profile(kw.get("cprofile_dump")))
if kw.get("instrument") or kw.get("instrument_open"):
stack.enter_context(instrument(kw.get("instrument_open", False)))
if kw.get("yappi"):
from datetime import datetime
output = "callgrind.dvc-{0:%Y%m%d}_{0:%H%M%S}.out"
stack.enter_context(
yappi_profile(path=lambda: output.format(datetime.now()))
)
yield
@@ -79,6 +115,9 @@ def add_debugging_flags(parser):
parser.add_argument(
"--cprofile", action="store_true", default=False, help=SUPPRESS
)
parser.add_argument(
"--yappi", action="store_true", default=False, help=SUPPRESS
)
parser.add_argument("--cprofile-dump", help=SUPPRESS)
parser.add_argument(
"--pdb", action="store_true", default=False, help=SUPPRESS
+7 -5
View File
@@ -68,7 +68,7 @@ def send(path):
url = "https://analytics.dvc.org"
headers = {"content-type": "application/json"}
with open(path) as fobj:
with open(path, encoding="utf-8") as fobj:
report = json.load(fobj)
report.update(_runtime_info())
@@ -82,10 +82,12 @@ def send(path):
def _scm_in_use():
from scmrepo.noscm import NoSCM
from dvc.exceptions import NotDvcRepoError
from dvc.repo import Repo
from dvc.scm import SCM, NoSCM
from dvc.scm.base import SCMError
from .scm import SCM, SCMError
try:
scm = SCM(root_dir=Repo.find_root())
@@ -173,13 +175,13 @@ def _find_or_create_user_id():
try:
with Lock(lockfile):
try:
with open(fname) as fobj:
with open(fname, encoding="utf-8") as fobj:
user_id = json.load(fobj)["user_id"]
except (FileNotFoundError, ValueError, KeyError):
user_id = str(uuid.uuid4())
with open(fname, "w") as fobj:
with open(fname, "w", encoding="utf-8") as fobj:
json.dump({"user_id": user_id}, fobj)
return user_id
+4 -5
View File
@@ -4,7 +4,6 @@ from contextlib import _GeneratorContextManager as GCM
from funcy import reraise
from dvc.exceptions import OutputNotFoundError, PathMissingError
from dvc.path_info import PathInfo
from dvc.repo import Repo
@@ -20,15 +19,15 @@ def get_url(path, repo=None, rev=None, remote=None):
directory in the remote storage.
"""
with Repo.open(repo, rev=rev, subrepos=True, uninitialized=True) as _repo:
path_info = PathInfo(_repo.root_dir) / path
fs_path = _repo.fs.path.join(_repo.root_dir, path)
with reraise(FileNotFoundError, PathMissingError(path, repo)):
metadata = _repo.repo_fs.metadata(path_info)
metadata = _repo.repo_fs.metadata(fs_path)
if not metadata.is_dvc:
raise OutputNotFoundError(path, repo)
cloud = metadata.repo.cloud
md5 = metadata.repo.dvcfs.info(path_info)["md5"]
md5 = metadata.repo.dvcfs.info(fs_path)["md5"]
return cloud.get_url_for(remote, checksum=md5)
@@ -113,7 +112,7 @@ def make_checkpoint():
root_dir, Repo.DVC_DIR, "tmp", CheckpointTask.SIGNAL_FILE
)
with builtins.open(signal_file, "w") as fobj:
with builtins.open(signal_file, "w", encoding="utf-8") as fobj:
# NOTE: force flushing/writing empty file to disk, otherwise when
# run in certain contexts (pytest) file may not actually be written
fobj.write("")
-351
View File
@@ -1,351 +0,0 @@
import logging
from shortuuid import uuid
from dvc import prompt
from dvc.exceptions import (
CacheLinkError,
CheckoutError,
ConfirmRemoveError,
DvcException,
)
from dvc.ignore import DvcIgnoreFilter
from dvc.objects import check, load
from dvc.objects.db.slow_link_detection import ( # type: ignore[attr-defined]
slow_link_guard,
)
from dvc.objects.errors import ObjectFormatError
from dvc.objects.stage import stage
from dvc.types import Optional
logger = logging.getLogger(__name__)
def _changed(path_info, fs, obj, cache, state=None):
logger.trace("checking if '%s'('%s') has changed.", path_info, obj)
try:
check(cache, obj)
except (FileNotFoundError, ObjectFormatError):
logger.debug(
"cache for '%s'('%s') has changed.", path_info, obj.hash_info
)
return True
actual = state.get(path_info, fs) if state else None
if actual is None:
try:
actual = stage(
cache, path_info, fs, obj.hash_info.name, dry_run=True
)[1].hash_info
except FileNotFoundError:
logger.debug("'%s' doesn't exist.", path_info)
return True
if obj.hash_info != actual:
logger.debug(
"hash value '%s' for '%s' has changed (actual '%s').",
obj.hash_info,
actual,
path_info,
)
return True
logger.trace("'%s' hasn't changed.", path_info)
return False
def _remove(path_info, fs, cache, force=False):
if not fs.exists(path_info):
return
if force:
fs.remove(path_info)
return
current = stage(cache, path_info, fs, fs.PARAM_CHECKSUM, dry_run=True)[
1
].hash_info
try:
obj = load(cache, current)
check(cache, obj)
except (FileNotFoundError, ObjectFormatError):
msg = (
f"file/directory '{path_info}' is going to be removed. "
"Are you sure you want to proceed?"
)
if not prompt.confirm(msg):
raise ConfirmRemoveError(str(path_info))
fs.remove(path_info)
def _verify_link(cache, path_info, link_type):
if link_type == "hardlink" and cache.fs.getsize(path_info) == 0:
return
if cache.cache_type_confirmed:
return
is_link = getattr(cache.fs, f"is_{link_type}", None)
if is_link and not is_link(path_info):
cache.fs.remove(path_info)
raise DvcException(f"failed to verify {link_type}")
cache.cache_type_confirmed = True
def _do_link(cache, from_info, to_info, link_method):
if cache.fs.exists(to_info):
raise DvcException(f"Link '{to_info}' already exists!")
link_method(from_info, to_info)
logger.debug(
"Created '%s': %s -> %s", cache.cache_types[0], from_info, to_info
)
@slow_link_guard
def _try_links(cache, from_info, to_info, link_types):
while link_types:
link_method = getattr(cache.fs, link_types[0])
try:
_do_link(cache, from_info, to_info, link_method)
_verify_link(cache, to_info, link_types[0])
return
except DvcException as exc:
logger.debug(
"Cache type '%s' is not supported: %s", link_types[0], exc
)
del link_types[0]
raise CacheLinkError([to_info])
def _link(cache, from_info, to_info):
cache.makedirs(to_info.parent)
try:
_try_links(cache, from_info, to_info, cache.cache_types)
except FileNotFoundError as exc:
raise CheckoutError([to_info]) from exc
def _cache_is_copy(cache, path_info):
"""Checks whether cache uses copies."""
if cache.cache_type_confirmed:
return cache.cache_types[0] == "copy"
if set(cache.cache_types) <= {"copy"}:
return True
workspace_file = path_info.with_name("." + uuid())
test_cache_file = cache.path_info / ".cache_type_test_file"
if not cache.fs.exists(test_cache_file):
cache.makedirs(test_cache_file.parent)
with cache.fs.open(test_cache_file, "wb") as fobj:
fobj.write(bytes(1))
try:
_link(cache, test_cache_file, workspace_file)
finally:
cache.fs.remove(workspace_file)
cache.fs.remove(test_cache_file)
cache.cache_type_confirmed = True
return cache.cache_types[0] == "copy"
def _checkout_file(
path_info,
fs,
obj,
cache,
force,
progress_callback=None,
relink=False,
state=None,
):
"""The file is changed we need to checkout a new copy"""
modified = False
cache_info = cache.hash_to_path_info(obj.hash_info.value)
if fs.exists(path_info):
if not relink and _changed(path_info, fs, obj, cache, state=state):
modified = True
_remove(path_info, fs, cache, force=force)
_link(cache, cache_info, path_info)
else:
if fs.iscopy(path_info) and _cache_is_copy(cache, path_info):
cache.unprotect(path_info)
else:
_remove(path_info, fs, cache, force=force)
_link(cache, cache_info, path_info)
else:
_link(cache, cache_info, path_info)
modified = True
if state:
state.save(path_info, fs, obj.hash_info)
if progress_callback:
progress_callback(str(path_info))
return modified
def _remove_redundant_files(
path_info, fs, obj, cache, force, dvcignore: Optional[DvcIgnoreFilter]
):
if dvcignore:
existing_files = set(dvcignore.walk_files(fs, path_info))
else:
existing_files = set(fs.walk_files(path_info))
needed_files = {path_info.joinpath(*key) for key, _ in obj}
redundant_files = existing_files - needed_files
for path in redundant_files:
_remove(path, fs, cache, force)
return bool(redundant_files)
def _checkout_dir(
path_info,
fs,
obj,
cache,
force,
progress_callback=None,
relink=False,
dvcignore: Optional[DvcIgnoreFilter] = None,
state=None,
):
modified = False
# Create dir separately so that dir is created
# even if there are no files in it
if not fs.exists(path_info):
modified = True
fs.makedirs(path_info)
logger.debug("Linking directory '%s'.", path_info)
failed = []
for entry_key, entry_obj in obj:
try:
entry_modified = _checkout_file(
path_info.joinpath(*entry_key),
fs,
entry_obj,
cache,
force,
progress_callback,
relink,
state=None,
)
if entry_modified:
modified = True
except CheckoutError as exc:
failed.extend(exc.target_infos)
modified = (
_remove_redundant_files(
path_info, fs, obj, cache, force, dvcignore=dvcignore
)
or modified
)
if failed:
raise CheckoutError(failed)
if state:
state.save(path_info, fs, obj.hash_info)
# relink is not modified, assume it as nochange
return modified and not relink
def _checkout(
path_info,
fs,
obj,
cache,
force=False,
progress_callback=None,
relink=False,
dvcignore: Optional[DvcIgnoreFilter] = None,
state=None,
):
if not obj.hash_info.isdir:
ret = _checkout_file(
path_info, fs, obj, cache, force, progress_callback, relink, state
)
else:
ret = _checkout_dir(
path_info,
fs,
obj,
cache,
force,
progress_callback,
relink,
dvcignore=dvcignore,
state=state,
)
if state:
state.save_link(path_info, fs)
return ret
def checkout(
path_info,
fs,
obj,
cache,
force=False,
progress_callback=None,
relink=False,
quiet=False,
dvcignore: Optional[DvcIgnoreFilter] = None,
state=None,
):
if path_info.scheme not in ["local", cache.fs.scheme]:
raise NotImplementedError
failed = None
skip = False
if not obj:
if not quiet:
logger.warning(
"No file hash info found for '%s'. It won't be created.",
path_info,
)
_remove(path_info, fs, cache, force=force)
failed = path_info
elif not relink and not _changed(path_info, fs, obj, cache, state=state):
logger.trace("Data '%s' didn't change.", path_info) # type: ignore
skip = True
if failed or skip:
if progress_callback and obj:
progress_callback(str(path_info), len(obj))
if failed:
raise CheckoutError([failed])
return
logger.debug("Checking out '%s' with cache '%s'.", path_info, obj)
return _checkout(
path_info,
fs,
obj,
cache,
force,
progress_callback,
relink,
dvcignore=dvcignore,
state=state,
)
+7 -6
View File
@@ -38,12 +38,14 @@ def _collect_targets(repo, target, outs):
targets = []
outs_trie = repo.index.outs_trie
for stage, info in pairs:
if not info:
for stage, path in pairs:
if not path:
targets.extend([str(out) for out in stage.outs])
continue
for out in outs_trie.itervalues(prefix=info.parts): # noqa: B301
for out in outs_trie.itervalues(
prefix=repo.fs.path.parts(path)
): # noqa: B301
targets.extend(str(out))
return targets
@@ -103,9 +105,8 @@ class CmdDAG(CmdBase):
if self.args.dot:
ui.write(_show_dot(G))
else:
from dvc.utils.pager import pager
pager(_show_ascii(G))
with ui.pager():
ui.write(_show_ascii(G))
return 0
+1
View File
@@ -393,6 +393,7 @@ def add_parser(subparsers, _parent_parser):
help="Show status of all stages in the specified directory.",
)
status_parser.add_argument(
"--json",
"--show-json",
action="store_true",
default=False,
+8 -6
View File
@@ -1,5 +1,4 @@
import argparse
import json
import logging
import os
@@ -16,7 +15,7 @@ def _digest(checksum):
return "{}..{}".format(checksum["old"][0:8], checksum["new"][0:8])
def _show_md(diff, show_hash=False, hide_missing=False):
def _show_markdown(diff, show_hash=False, hide_missing=False):
headers = ["Status", "Hash", "Path"] if show_hash else ["Status", "Path"]
rows = []
statuses = ["added", "deleted", "renamed", "modified"]
@@ -142,10 +141,10 @@ class CmdDiff(CmdBase):
del entry["hash"]
diff[key] = entries
if self.args.show_json:
ui.write(json.dumps(diff))
elif self.args.show_md:
_show_md(diff, show_hash, hide_missing)
if self.args.json:
ui.write_json(diff)
elif self.args.markdown:
_show_markdown(diff, show_hash, hide_missing)
elif diff:
self._show_diff(diff, hide_missing)
@@ -188,6 +187,7 @@ def add_parser(subparsers, parent_parser):
nargs="?",
)
diff_parser.add_argument(
"--json",
"--show-json",
help="Format the output into a JSON",
action="store_true",
@@ -200,9 +200,11 @@ def add_parser(subparsers, parent_parser):
default=False,
)
diff_parser.add_argument(
"--md",
"--show-md",
help="Show tabulated output in the Markdown format (GFM).",
action="store_true",
dest="markdown",
default=False,
)
diff_parser.add_argument(
+165 -88
View File
@@ -1,14 +1,12 @@
import argparse
import logging
import os
from collections import Counter, OrderedDict, defaultdict
from datetime import date, datetime
from fnmatch import fnmatch
from typing import TYPE_CHECKING, Dict, Iterable, Optional
from funcy import lmap
from funcy import compact, lmap
from dvc import prompt
from dvc.command import completion
from dvc.command.base import CmdBase, append_doc_link, fix_subparsers
from dvc.command.metrics import DEFAULT_PRECISION
@@ -20,9 +18,8 @@ from dvc.utils.flatten import flatten
from dvc.utils.serialize import encode_exception
if TYPE_CHECKING:
from rich.text import Text
from dvc.compare import TabularData
from dvc.ui import RichText
logger = logging.getLogger(__name__)
@@ -145,7 +142,7 @@ def _collect_rows(
fill_value=FILL_VALUE,
iso=False,
):
from dvc.scm.git import Git
from scmrepo.git import Git
if sort_by:
sort_path, sort_name, sort_type = _sort_column(
@@ -261,11 +258,12 @@ def _sort_column(sort_by, metric_names, param_names):
def _sort_exp(experiments, sort_path, sort_name, typ, reverse):
def _sort(item):
rev, exp = item
tip = exp.get("checkpoint_tip")
exp_data = exp.get("data", {})
tip = exp_data.get("checkpoint_tip")
if tip and tip != rev:
# Sort checkpoint experiments by tip commit
return _sort((tip, experiments[tip]))
data = exp.get(typ, {}).get(sort_path, {})
data = exp_data.get(typ, {}).get(sort_path, {}).get("data", {})
val = flatten(data).get(sort_name)
return val is None, val
@@ -292,8 +290,6 @@ def _format_time(datetime_obj, fill_value=FILL_VALUE, iso=False):
def _extend_row(row, names, items, precision, fill_value=FILL_VALUE):
from rich.text import Text
from dvc.compare import _format_field, with_value
if not items:
@@ -308,10 +304,10 @@ def _extend_row(row, names, items, precision, fill_value=FILL_VALUE):
item.get(name),
FILL_VALUE_ERRORED if data.get("error", None) else fill_value,
)
# wrap field data in rich.Text, otherwise rich may
# wrap field data in ui.rich_text, otherwise rich may
# interpret unescaped braces from list/dict types as rich
# markup tags
row.append(Text(str(_format_field(value, precision))))
row.append(ui.rich_text(str(_format_field(value, precision))))
def _parse_filter_list(param_list):
@@ -362,17 +358,15 @@ def experiments_table(
return td
def prepare_exp_id(kwargs) -> "Text":
from rich.text import Text
def prepare_exp_id(kwargs) -> "RichText":
exp_name = kwargs["Experiment"]
rev = kwargs["rev"]
typ = kwargs.get("typ", "baseline")
if typ == "baseline" or not exp_name:
text = Text(exp_name or rev)
text = ui.rich_text(exp_name or rev)
else:
text = Text.assemble(rev, " [", (exp_name, "bold"), "]")
text = ui.rich_text.assemble(rev, " [", (exp_name, "bold"), "]")
parent = kwargs.get("parent")
suff = f" ({parent})" if parent else ""
@@ -380,7 +374,7 @@ def prepare_exp_id(kwargs) -> "Text":
tree = experiment_types[typ]
pref = f"{tree} " if tree else ""
return Text(pref) + text
return ui.rich_text(pref) + text
def baseline_styler(typ):
@@ -388,7 +382,12 @@ def baseline_styler(typ):
def show_experiments(
all_experiments, pager=True, no_timestamp=False, show_csv=False, **kwargs
all_experiments,
pager=True,
no_timestamp=False,
csv=False,
markdown=False,
**kwargs,
):
from funcy.seqs import flatten as flatten_list
@@ -444,7 +443,7 @@ def show_experiments(
row_styles = lmap(baseline_styler, td.column("typ"))
if not show_csv:
if not csv:
merge_headers = ["Experiment", "rev", "typ", "parent"]
td.column("Experiment")[:] = map(
prepare_exp_id, td.as_dict(merge_headers)
@@ -472,13 +471,17 @@ def show_experiments(
}
)
if kwargs.get("only_changed", False):
td.drop_duplicates("cols")
td.render(
pager=pager,
borders=True,
rich_table=True,
header_styles=styles,
row_styles=row_styles,
show_csv=show_csv,
csv=csv,
markdown=markdown,
)
@@ -511,18 +514,16 @@ class CmdExperimentsShow(CmdBase):
logger.exception("failed to show experiments")
return 1
if self.args.show_json:
import json
ui.write(json.dumps(all_experiments, default=_format_json))
if self.args.json:
ui.write_json(all_experiments, default=_format_json)
else:
precision = (
self.args.precision or None
if self.args.show_csv
if self.args.csv
else DEFAULT_PRECISION
)
fill_value = "" if self.args.show_csv else FILL_VALUE
iso = True if self.args.show_csv else False
fill_value = "" if self.args.csv else FILL_VALUE
iso = True if self.args.csv else False
show_experiments(
all_experiments,
@@ -537,7 +538,9 @@ class CmdExperimentsShow(CmdBase):
fill_value=fill_value,
iso=iso,
pager=not self.args.no_pager,
show_csv=self.args.show_csv,
csv=self.args.csv,
markdown=self.args.markdown,
only_changed=self.args.only_changed,
)
return 0
@@ -566,10 +569,8 @@ class CmdExperimentsDiff(CmdBase):
logger.exception("failed to show experiments diff")
return 1
if self.args.show_json:
import json
ui.write(json.dumps(diff))
if self.args.json:
ui.write_json(diff)
else:
from dvc.compare import show_diff
@@ -584,11 +585,12 @@ class CmdExperimentsDiff(CmdBase):
show_diff(
diff[key],
title=title,
markdown=self.args.show_md,
markdown=self.args.markdown,
no_path=self.args.no_path,
old=self.args.old,
on_empty_diff="diff not supported",
precision=precision if key == "metrics" else None,
a_rev=self.args.a_rev,
b_rev=self.args.b_rev,
)
return 0
@@ -669,7 +671,7 @@ class CmdExperimentsGC(CmdRepro):
logger.warning(msg)
msg = "Are you sure you want to proceed?"
if not self.args.force and not prompt.confirm(msg):
if not self.args.force and not ui.confirm(msg):
return 1
removed = self.repo.experiments.gc(
@@ -791,6 +793,7 @@ class CmdExperimentsRemove(CmdBase):
class CmdExperimentsInit(CmdBase):
DEFAULT_NAME = "train"
CODE = "src"
DATA = "data"
MODELS = "models"
@@ -798,51 +801,79 @@ class CmdExperimentsInit(CmdBase):
DEFAULT_PARAMS = "params.yaml"
PLOTS = "plots"
DVCLIVE = "dvclive"
DEFAULT_NAME = "default"
DEFAULTS = {
"code": CODE,
"data": DATA,
"models": MODELS,
"metrics": DEFAULT_METRICS,
"params": DEFAULT_PARAMS,
"plots": PLOTS,
"live": DVCLIVE,
}
EXP_LINK = "https://s.dvc.org/g/exp/run"
def run(self):
from dvc.command.stage import parse_cmd
cmd = parse_cmd(self.args.cmd)
if not cmd:
cmd = parse_cmd(self.args.command)
if not self.args.interactive and not cmd:
raise InvalidArgumentError("command is not specified")
if self.args.interactive:
raise NotImplementedError(
"'-i/--interactive' is not implemented yet."
)
if self.args.explicit:
raise NotImplementedError("'--explicit' is not implemented yet.")
if self.args.template:
raise NotImplementedError("template is not supported yet.")
from dvc.utils.serialize import LOADERS
from dvc.repo.experiments.init import init
code = self.args.code or self.CODE
data = self.args.data or self.DATA
models = self.args.models or self.MODELS
metrics = self.args.metrics or self.DEFAULT_METRICS
params_path = self.args.params or self.DEFAULT_PARAMS
plots = self.args.plots or self.PLOTS
dvclive = self.args.live or self.DVCLIVE
defaults = {}
if not self.args.explicit:
config = self.repo.config["exp"]
defaults.update({**self.DEFAULTS, **config})
_, ext = os.path.splitext(params_path)
params = list(LOADERS[ext](params_path))
name = self.args.name or self.DEFAULT_NAME
stage = self.repo.stage.add(
name=name,
cmd=cmd,
deps=[code, data],
outs=[models],
params=[{params_path: params}],
metrics_no_cache=[metrics],
plots_no_cache=[plots],
live=dvclive,
force=True,
cli_args = compact(
{
"cmd": cmd,
"code": self.args.code,
"data": self.args.data,
"models": self.args.models,
"metrics": self.args.metrics,
"params": self.args.params,
"plots": self.args.plots,
"live": self.args.live,
}
)
initialized_stage = init(
self.repo,
name=self.args.name,
type=self.args.type,
defaults=defaults,
overrides=cli_args,
interactive=self.args.interactive,
force=self.args.force,
)
text = ui.rich_text.assemble(
"\n" if self.args.interactive else "",
"Created ",
(self.args.name, "bright_blue"),
" stage in ",
("dvc.yaml", "green"),
".",
)
if not self.args.run:
text.append_text(
ui.rich_text.assemble(
" To run, use ",
('"dvc exp run"', "green"),
".\nSee ",
(self.EXP_LINK, "repr.url"),
".",
)
)
ui.write(text, styled=True)
if self.args.run:
return self.repo.experiments.run(targets=[stage.addressing])
return self.repo.experiments.run(
targets=[initialized_stage.addressing]
)
return 0
@@ -951,7 +982,10 @@ def add_parser(subparsers, parent_parser):
)
experiments_show_parser.add_argument(
"--sort-order",
help="Sort order to use with --sort-by.",
help=(
"Sort order to use with --sort-by."
" Defaults to ascending ('asc')."
),
choices=("asc", "desc"),
default="asc",
)
@@ -968,17 +1002,27 @@ def add_parser(subparsers, parent_parser):
help="Always show git commit SHAs instead of branch/tag names.",
)
experiments_show_parser.add_argument(
"--json",
"--show-json",
action="store_true",
default=False,
help="Print output in JSON format instead of a human-readable table.",
)
experiments_show_parser.add_argument(
"--csv",
"--show-csv",
action="store_true",
default=False,
help="Print output in csv format instead of a human-readable table.",
)
experiments_show_parser.add_argument(
"--md",
"--show-md",
action="store_true",
default=False,
dest="markdown",
help="Show tabulated output in the Markdown format (GFM).",
)
experiments_show_parser.add_argument(
"--precision",
type=int,
@@ -988,6 +1032,15 @@ def add_parser(subparsers, parent_parser):
),
metavar="<n>",
)
experiments_show_parser.add_argument(
"--only-changed",
action="store_true",
default=False,
help=(
"Only show metrics/params with values varying "
"across the selected experiments."
),
)
experiments_show_parser.set_defaults(func=CmdExperimentsShow)
EXPERIMENTS_APPLY_HELP = (
@@ -1042,23 +1095,20 @@ def add_parser(subparsers, parent_parser):
help="Show only params that are stage dependencies.",
)
experiments_diff_parser.add_argument(
"--json",
"--show-json",
action="store_true",
default=False,
help="Show output in JSON format.",
)
experiments_diff_parser.add_argument(
"--md",
"--show-md",
action="store_true",
default=False,
dest="markdown",
help="Show tabulated output in the Markdown format (GFM).",
)
experiments_diff_parser.add_argument(
"--old",
action="store_true",
default=False,
help="Show old metric/param value.",
)
experiments_diff_parser.add_argument(
"--no-path",
action="store_true",
@@ -1366,9 +1416,10 @@ def add_parser(subparsers, parent_parser):
parents=[parent_parser],
description=append_doc_link(EXPERIMENTS_INIT_HELP, "exp/init"),
formatter_class=argparse.RawDescriptionHelpFormatter,
help=EXPERIMENTS_INIT_HELP,
)
experiments_init_parser.add_argument(
"cmd",
"command",
nargs=argparse.REMAINDER,
help="Command to execute.",
metavar="command",
@@ -1385,40 +1436,66 @@ def add_parser(subparsers, parent_parser):
help="Prompt for values that are not provided",
)
experiments_init_parser.add_argument(
"--template", help="Stage template to use to fill with provided values"
"-f",
"--force",
action="store_true",
default=False,
help="Overwrite existing stage",
)
experiments_init_parser.add_argument(
"--explicit", help="Only use the path values explicitly provided"
"--explicit",
action="store_true",
default=False,
help="Only use the path values explicitly provided",
)
experiments_init_parser.add_argument(
"--name", "-n", help="Name of the stage to create"
"--name",
"-n",
help="Name of the stage to create (default: %(default)s)",
default=CmdExperimentsInit.DEFAULT_NAME,
)
experiments_init_parser.add_argument(
"--code",
help="Path to the source file or directory "
"which your experiments depend",
"which your experiments depend"
f" (default: {CmdExperimentsInit.CODE})",
)
experiments_init_parser.add_argument(
"--data",
help="Path to the data file or directory "
"which your experiments depend",
"which your experiments depend"
f" (default: {CmdExperimentsInit.DATA})",
)
experiments_init_parser.add_argument(
"--models",
help="Path to the model file or directory for your experiments",
help="Path to the model file or directory for your experiments"
f" (default: {CmdExperimentsInit.MODELS})",
)
experiments_init_parser.add_argument(
"--params", help="Path to the parameters file for your experiments"
"--params",
help="Path to the parameters file for your experiments"
f" (default: {CmdExperimentsInit.DEFAULT_PARAMS})",
)
experiments_init_parser.add_argument(
"--metrics", help="Path to the metrics file for your experiments"
"--metrics",
help="Path to the metrics file for your experiments"
f" (default: {CmdExperimentsInit.DEFAULT_METRICS})",
)
experiments_init_parser.add_argument(
"--plots",
help="Path to the plots file or directory for your experiments",
help="Path to the plots file or directory for your experiments"
f" (default: {CmdExperimentsInit.PLOTS})",
)
experiments_init_parser.add_argument(
"--live", help="Path to log dvclive outputs for your experiments"
"--live",
help="Path to log dvclive outputs for your experiments"
f" (default: {CmdExperimentsInit.DVCLIVE})",
)
experiments_init_parser.add_argument(
"--type",
choices=["default", "dl"],
default="default",
help="Select type of stage to create (default: %(default)s)",
)
experiments_init_parser.set_defaults(func=CmdExperimentsInit)
+7 -5
View File
@@ -34,10 +34,8 @@ class CmdList(CmdBaseNoRepo):
recursive=self.args.recursive,
dvc_only=self.args.dvc_only,
)
if self.args.show_json:
import json
ui.write(json.dumps(entries))
if self.args.json:
ui.write_json(entries)
elif entries:
entries = _prettify(entries, with_color=True)
ui.write("\n".join(entries))
@@ -54,6 +52,7 @@ def add_parser(subparsers, parent_parser):
)
list_parser = subparsers.add_parser(
"list",
aliases=["ls"],
parents=[parent_parser],
description=append_doc_link(LIST_HELP, "list"),
help=LIST_HELP,
@@ -70,7 +69,10 @@ def add_parser(subparsers, parent_parser):
"--dvc-only", action="store_true", help="Show only DVC outputs."
)
list_parser.add_argument(
"--show-json", action="store_true", help="Show output in JSON format."
"--json",
"--show-json",
action="store_true",
help="Show output in JSON format.",
)
list_parser.add_argument(
"--rev",
+176 -7
View File
@@ -2,7 +2,10 @@ import argparse
from dvc.command.base import CmdBase, append_doc_link, fix_subparsers
from dvc.command.config import CmdConfig
from dvc.compare import TabularData
from dvc.config import ConfigError
from dvc.exceptions import DvcException
from dvc.types import Dict, List
from dvc.ui import ui
from dvc.utils import format_link
@@ -70,18 +73,56 @@ class CmdMachineRemove(CmdMachineConfig):
class CmdMachineList(CmdMachineConfig):
def run(self):
TABLE_COLUMNS = [
"name",
"cloud",
"region",
"image",
"spot",
"spot_price",
"instance_hdd_size",
"instance_type",
"ssh_private",
"startup_script",
]
PRIVATE_COLUMNS = ["ssh_private", "startup_script"]
def _hide_private(self, conf):
for machine in conf:
for column in self.PRIVATE_COLUMNS:
if column in conf[machine]:
conf[machine][column] = "***"
def _show_origin(self):
levels = [self.args.level] if self.args.level else self.config.LEVELS
for level in levels:
conf = self.config.read(level)["machine"]
if self.args.name:
conf = conf.get(self.args.name, {})
prefix = self._config_file_prefix(
self.args.show_origin, self.config, level
)
self._hide_private(conf)
prefix = self._config_file_prefix(True, self.config, level)
configs = list(self._format_config(conf, prefix))
if configs:
ui.write("\n".join(configs))
def _show_table(self):
td = TabularData(self.TABLE_COLUMNS, fill_value="-")
conf = self.config.read()["machine"]
if self.args.name:
conf = {self.args.name: conf.get(self.args.name, {})}
self._hide_private(conf)
for machine, machine_config in conf.items():
machine_config["name"] = machine
td.row_from_dict(machine_config)
td.dropna("cols", "all")
td.render()
def run(self):
if self.args.show_origin:
self._show_origin()
else:
self._show_table()
return 0
@@ -104,6 +145,54 @@ class CmdMachineModify(CmdMachineConfig):
return 0
class CmdMachineRename(CmdBase):
def _check_exists(self, conf):
if self.args.name not in conf["machine"]:
raise ConfigError(f"machine '{self.args.name}' doesn't exist.")
def _rename_default(self, conf):
if conf["core"].get("machine") == self.args.name:
conf["core"]["machine"] = self.args.new
def _check_before_rename(self):
from dvc.machine import validate_name
validate_name(self.args.new)
all_config = self.config.load_config_to_level(None)
if self.args.new in all_config.get("machine", {}):
raise ConfigError(
"Rename failed. Machine '{}' already exists.".format(
self.args.new
)
)
ui.write(f"Rename machine '{self.args.name}' to '{self.args.new}'.")
def run(self):
self._check_before_rename()
with self.config.edit(self.args.level) as conf:
self._check_exists(conf)
conf["machine"][self.args.new] = conf["machine"][self.args.name]
try:
self.repo.machine.rename(self.args.name, self.args.new)
except DvcException as error:
del conf["machine"][self.args.new]
raise ConfigError("terraform rename failed") from error
del conf["machine"][self.args.name]
self._rename_default(conf)
up_to_level = self.args.level or "repo"
for level in reversed(self.config.LEVELS):
if level == up_to_level:
break
with self.config.edit(level) as level_conf:
self._rename_default(level_conf)
return 0
class CmdMachineDefault(CmdMachineConfig):
def run(self):
if self.args.name is None and not self.args.unset:
@@ -143,6 +232,59 @@ class CmdMachineCreate(CmdBase):
return 0
class CmdMachineStatus(CmdBase):
INSTANCE_FIELD = ["name", "instance", "status"]
SHOWN_FIELD = [
"cloud",
"instance_ip",
"instance_type",
"instance_hdd_size",
"instance_gpu",
]
def _add_row(
self,
name: str,
all_status: List[Dict],
td: TabularData,
):
if not all_status:
row = [name, None, "offline"]
td.append(row)
for i, status in enumerate(all_status, start=1):
row = [name, f"num_{i}", "running" if status else "offline"]
for field in self.SHOWN_FIELD:
value = str(status.get(field, ""))
row.append(value)
td.append(row)
def run(self):
if self.repo.machine is None:
raise MachineDisabledError
td = TabularData(
self.INSTANCE_FIELD + self.SHOWN_FIELD, fill_value="-"
)
if self.args.name:
all_status = list(self.repo.machine.status(self.args.name))
self._add_row(self.args.name, all_status, td)
else:
name_set = set()
for level in self.repo.config.LEVELS:
conf = self.repo.config.read(level)["machine"]
name_set.update(conf.keys())
name_list = list(name_set)
for name in sorted(name_list):
all_status = list(self.repo.machine.status(name))
self._add_row(name, all_status, td)
td.dropna("cols", "all")
td.render()
return 0
class CmdMachineDestroy(CmdBase):
def run(self):
if self.repo.machine is None:
@@ -280,6 +422,18 @@ def add_parser(subparsers, parent_parser):
)
machine_modify_parser.set_defaults(func=CmdMachineModify)
machine_RENAME_HELP = "Rename a machine "
machine_rename_parser = machine_subparsers.add_parser(
"rename",
parents=[parent_config_parser, parent_parser],
description=append_doc_link(machine_RENAME_HELP, "remote/rename"),
help=machine_RENAME_HELP,
formatter_class=argparse.RawDescriptionHelpFormatter,
)
machine_rename_parser.add_argument("name", help="Machine to be renamed")
machine_rename_parser.add_argument("new", help="New name of the machine")
machine_rename_parser.set_defaults(func=CmdMachineRename)
machine_REMOVE_HELP = "Remove an machine."
machine_remove_parser = machine_subparsers.add_parser(
"remove",
@@ -296,7 +450,7 @@ def add_parser(subparsers, parent_parser):
machine_CREATE_HELP = "Create and start a machine instance."
machine_create_parser = machine_subparsers.add_parser(
"create",
parents=[parent_config_parser, parent_parser],
parents=[parent_parser],
description=append_doc_link(machine_CREATE_HELP, "machine/create"),
help=machine_CREATE_HELP,
formatter_class=argparse.RawDescriptionHelpFormatter,
@@ -306,10 +460,25 @@ def add_parser(subparsers, parent_parser):
)
machine_create_parser.set_defaults(func=CmdMachineCreate)
machine_STATUS_HELP = (
"List the status of running instances for one/all machines."
)
machine_status_parser = machine_subparsers.add_parser(
"status",
parents=[parent_parser],
description=append_doc_link(machine_STATUS_HELP, "machine/status"),
help=machine_STATUS_HELP,
formatter_class=argparse.RawDescriptionHelpFormatter,
)
machine_status_parser.add_argument(
"name", nargs="?", help="(optional) Name of the machine."
)
machine_status_parser.set_defaults(func=CmdMachineStatus)
machine_DESTROY_HELP = "Destroy an machine instance."
machine_destroy_parser = machine_subparsers.add_parser(
"destroy",
parents=[parent_config_parser, parent_parser],
parents=[parent_parser],
description=append_doc_link(machine_DESTROY_HELP, "machine/destroy"),
help=machine_DESTROY_HELP,
formatter_class=argparse.RawDescriptionHelpFormatter,
@@ -322,7 +491,7 @@ def add_parser(subparsers, parent_parser):
machine_SSH_HELP = "Connect to a machine via SSH."
machine_ssh_parser = machine_subparsers.add_parser(
"ssh",
parents=[parent_config_parser, parent_parser],
parents=[parent_parser],
description=append_doc_link(machine_SSH_HELP, "machine/ssh"),
help=machine_SSH_HELP,
formatter_class=argparse.RawDescriptionHelpFormatter,
+14 -10
View File
@@ -31,16 +31,14 @@ class CmdMetricsShow(CmdMetricsBase):
logger.exception("")
return 1
if self.args.show_json:
import json
ui.write(json.dumps(metrics, default=encode_exception))
if self.args.json:
ui.write_json(metrics, default=encode_exception)
else:
from dvc.compare import show_metrics
show_metrics(
metrics,
markdown=self.args.show_md,
markdown=self.args.markdown,
all_branches=self.args.all_branches,
all_tags=self.args.all_tags,
all_commits=self.args.all_commits,
@@ -65,20 +63,20 @@ class CmdMetricsDiff(CmdMetricsBase):
logger.exception("failed to show metrics diff")
return 1
if self.args.show_json:
import json
ui.write(json.dumps(diff))
if self.args.json:
ui.write_json(diff)
else:
from dvc.compare import show_diff
show_diff(
diff,
title="Metric",
markdown=self.args.show_md,
markdown=self.args.markdown,
no_path=self.args.no_path,
precision=self.args.precision or DEFAULT_PRECISION,
round_digits=True,
a_rev=self.args.a_rev,
b_rev=self.args.b_rev,
)
return 0
@@ -140,15 +138,18 @@ def add_parser(subparsers, parent_parser):
help="Show metrics for all commits.",
)
metrics_show_parser.add_argument(
"--json",
"--show-json",
action="store_true",
default=False,
help="Show output in JSON format.",
)
metrics_show_parser.add_argument(
"--md",
"--show-md",
action="store_true",
default=False,
dest="markdown",
help="Show tabulated output in the Markdown format (GFM).",
)
metrics_show_parser.add_argument(
@@ -220,15 +221,18 @@ def add_parser(subparsers, parent_parser):
help="Show unchanged metrics as well.",
)
metrics_diff_parser.add_argument(
"--json",
"--show-json",
action="store_true",
default=False,
help="Show output in JSON format.",
)
metrics_diff_parser.add_argument(
"--md",
"--show-md",
action="store_true",
default=False,
dest="markdown",
help="Show tabulated output in the Markdown format (GFM).",
)
metrics_diff_parser.add_argument(
+8 -5
View File
@@ -25,19 +25,19 @@ class CmdParamsDiff(CmdBase):
logger.exception("failed to show params diff")
return 1
if self.args.show_json:
import json
ui.write(json.dumps(diff))
if self.args.json:
ui.write_json(diff)
else:
from dvc.compare import show_diff
show_diff(
diff,
title="Param",
markdown=self.args.show_md,
markdown=self.args.markdown,
no_path=self.args.no_path,
show_changes=False,
a_rev=self.args.a_rev,
b_rev=self.args.b_rev,
)
return 0
@@ -103,15 +103,18 @@ def add_parser(subparsers, parent_parser):
help="Show only params that are stage dependencies.",
)
params_diff_parser.add_argument(
"--json",
"--show-json",
action="store_true",
default=False,
help="Show output in JSON format.",
)
params_diff_parser.add_argument(
"--md",
"--show-md",
action="store_true",
default=False,
dest="markdown",
help="Show tabulated output in the Markdown format (GFM).",
)
params_diff_parser.add_argument(
+6 -11
View File
@@ -62,19 +62,11 @@ class CmdPlots(CmdBase):
html_template_path=self.args.html_template,
)
assert index_path.is_absolute()
url = index_path.as_uri()
ui.write(url)
ui.write(index_path.as_uri())
if self.args.open:
import webbrowser
return ui.open_browser(index_path)
opened = webbrowser.open(index_path)
if not opened:
ui.error_write(
"Failed to open. Please try opening it manually."
)
return 1
return 0
except DvcException:
@@ -183,7 +175,10 @@ def add_parser(subparsers, parent_parser):
_add_output_arguments(plots_diff_parser)
plots_diff_parser.set_defaults(func=CmdPlotsDiff)
PLOTS_MODIFY_HELP = "Modify display properties of plot metrics files."
PLOTS_MODIFY_HELP = (
"Modify display properties of data-series plots "
"(has no effect on image-type plots)."
)
plots_modify_parser = plots_subparsers.add_parser(
"modify",
parents=[parent_parser],
+1 -1
View File
@@ -86,7 +86,7 @@ class CmdRemoteDefault(CmdRemote):
if self.args.name is None and not self.args.unset:
conf = self.config.read(self.args.level)
try:
print(conf["core"]["remote"])
ui.write(conf["core"]["remote"])
except KeyError:
ui.write("No default remote set")
return 1
+2 -2
View File
@@ -23,7 +23,7 @@ class CmdRun(CmdBase):
self.args.outs_persist_no_cache,
self.args.checkpoints,
self.args.params,
self.args.cmd,
self.args.command,
]
): # pragma: no cover
logger.error(
@@ -36,7 +36,7 @@ class CmdRun(CmdBase):
kwargs = vars(self.args)
kwargs.update(
{
"cmd": parse_cmd(self.args.cmd),
"cmd": parse_cmd(self.args.command),
"fname": kwargs.pop("file"),
"no_exec": (self.args.no_exec or bool(self.args.checkpoints)),
"run_cache": not kwargs.pop("no_run_cache"),
+2 -2
View File
@@ -129,7 +129,7 @@ class CmdStageAdd(CmdBase):
kwargs = vars(self.args)
kwargs.update(
{
"cmd": parse_cmd(kwargs.pop("cmd")),
"cmd": parse_cmd(kwargs.pop("command")),
"params": parse_params(self.args.params),
}
)
@@ -281,7 +281,7 @@ def _add_common_args(parser):
),
)
parser.add_argument(
"cmd",
"command",
nargs=argparse.REMAINDER,
help="Command to execute.",
metavar="command",
+2 -4
View File
@@ -69,10 +69,8 @@ class CmdDataStatus(CmdDataBase):
if self.args.quiet:
return bool(st)
if self.args.show_json:
import json
ui.write(json.dumps(st))
if self.args.json:
ui.write_json(st)
return 0
if st:
+95 -4
View File
@@ -12,6 +12,7 @@ from typing import (
Mapping,
MutableSequence,
Sequence,
Set,
Tuple,
Union,
overload,
@@ -115,6 +116,8 @@ class TabularData(MutableSequence[Sequence["CellT"]]):
del col[item]
def __len__(self) -> int:
if not self._columns:
return 0
return len(self.columns[0])
@property
@@ -168,7 +171,7 @@ class TabularData(MutableSequence[Sequence["CellT"]]):
def render(self, **kwargs: Any):
from dvc.ui import ui
if kwargs.pop("show_csv", False):
if kwargs.pop("csv", False):
ui.write(self.to_csv(), end="")
else:
ui.table(self, headers=self.keys(), **kwargs)
@@ -181,6 +184,86 @@ class TabularData(MutableSequence[Sequence["CellT"]]):
{k: self._columns[k][i] for k in keys} for i in range(len(self))
]
def dropna(self, axis: str = "rows", how="any"):
if axis not in ["rows", "cols"]:
raise ValueError(
f"Invalid 'axis' value {axis}."
"Choose one of ['rows', 'cols']"
)
if how not in ["any", "all"]:
raise ValueError(
f"Invalid 'how' value {how}." "Choose one of ['any', 'all']"
)
match_line: Set = set()
match = True
if how == "all":
match = False
for n_row, row in enumerate(self):
for n_col, col in enumerate(row):
if (col == self._fill_value) is match:
if axis == "rows":
match_line.add(n_row)
break
else:
match_line.add(self.keys()[n_col])
to_drop = match_line
if how == "all":
if axis == "rows":
to_drop = set(range(len(self)))
else:
to_drop = set(self.keys())
to_drop -= match_line
if axis == "rows":
for name in self.keys():
self._columns[name] = Column(
[
x
for n, x in enumerate(self._columns[name])
if n not in to_drop
]
)
else:
self.drop(*to_drop)
def drop_duplicates(self, axis: str = "rows"):
if axis not in ["rows", "cols"]:
raise ValueError(
f"Invalid 'axis' value {axis}."
"Choose one of ['rows', 'cols']"
)
if axis == "cols":
cols_to_drop: List[str] = []
for n_col, col in enumerate(self.columns):
# Cast to str because Text is not hashable error
unique_vals = {str(x) for x in col if x != self._fill_value}
if len(unique_vals) == 1:
cols_to_drop.append(self.keys()[n_col])
self.drop(*cols_to_drop)
elif axis == "rows":
unique_rows = []
rows_to_drop: List[int] = []
for n_row, row in enumerate(self):
tuple_row = tuple(row)
if tuple_row in unique_rows:
rows_to_drop.append(n_row)
else:
unique_rows.append(tuple_row)
for name in self.keys():
self._columns[name] = Column(
[
x
for n, x in enumerate(self._columns[name])
if n not in rows_to_drop
]
)
def _normalize_float(val: float, precision: int):
return f"{val:.{precision}g}"
@@ -211,8 +294,12 @@ def diff_table(
precision: int = None,
round_digits: bool = False,
on_empty_diff: str = None,
a_rev: str = None,
b_rev: str = None,
) -> TabularData:
headers: List[str] = ["Path", title, "Old", "New", "Change"]
a_rev = a_rev or "HEAD"
b_rev = b_rev or "workspace"
headers: List[str] = ["Path", title, a_rev, b_rev, "Change"]
fill_value = "-"
td = TabularData(headers, fill_value=fill_value)
@@ -240,8 +327,8 @@ def diff_table(
td.drop("Change")
if not old:
td.drop("Old")
td.rename("New", "Value")
td.drop(a_rev)
td.rename(b_rev, "Value")
return td
@@ -256,6 +343,8 @@ def show_diff(
round_digits: bool = False,
on_empty_diff: str = None,
markdown: bool = False,
a_rev: str = None,
b_rev: str = None,
) -> None:
td = diff_table(
diff,
@@ -266,6 +355,8 @@ def show_diff(
precision=precision,
round_digits=round_digits,
on_empty_diff=on_empty_diff,
a_rev=a_rev,
b_rev=b_rev,
)
td.render(markdown=markdown)
+4 -3
View File
@@ -8,7 +8,6 @@ from functools import partial
from funcy import cached_property, compact, memoize, re_find
from dvc.exceptions import DvcException, NotDvcRepoError
from dvc.path_info import PathInfo
logger = logging.getLogger(__name__)
@@ -141,7 +140,7 @@ class Config(dict):
dvc.config.Config: config object.
"""
config_file = os.path.join(dvc_dir, Config.CONFIG)
open(config_file, "w+").close()
open(config_file, "w+", encoding="utf-8").close()
return Config(dvc_dir)
def load(self, validate=True, config=None):
@@ -229,6 +228,7 @@ class Config(dict):
@staticmethod
def _to_relpath(conf_dir, path):
from dvc.fs.local import localfs
from dvc.utils import relpath
from .config_schema import RelPath
@@ -238,8 +238,9 @@ class Config(dict):
if isinstance(path, RelPath) or not os.path.isabs(path):
path = relpath(path, conf_dir)
return localfs.path.as_posix(path)
return PathInfo(path).as_posix()
return path
@staticmethod
def _save_paths(conf, filename):
+21 -5
View File
@@ -156,6 +156,8 @@ SCHEMA = {
"grant_write_acp": str,
"grant_full_control": str,
"cache_regions": bool,
"read_timeout": Coerce(int),
"connect_timeout": Coerce(int),
**REMOTE_COMMON,
},
"gs": {
@@ -177,10 +179,12 @@ SCHEMA = {
},
"hdfs": {"user": str, "kerb_ticket": str, **REMOTE_COMMON},
"webhdfs": {
"hdfscli_config": str,
"webhdfs_token": str,
"user": str,
"webhdfs_alias": str,
"kerberos": Bool,
"kerberos_principal": str,
"proxy_to": str,
"ssl_verify": Any(Bool, str),
"token": str,
"use_https": Bool,
**REMOTE_COMMON,
},
"azure": {
@@ -223,9 +227,13 @@ SCHEMA = {
)
},
"state": {
"dir": str,
"row_limit": All(Coerce(int), Range(1)), # obsoleted
"row_cleanup_quota": All(Coerce(int), Range(0, 100)), # obsoleted
},
"index": {
"dir": str,
},
"machine": {
str: {
"cloud": All(Lower, Choices("aws", "azure")),
@@ -233,7 +241,6 @@ SCHEMA = {
Lower, Choices("us-west", "us-east", "eu-west", "eu-north")
),
"image": str,
"name": str,
"spot": Bool,
"spot_price": Coerce(float),
"instance_hdd_size": Coerce(int),
@@ -250,4 +257,13 @@ SCHEMA = {
Optional("parametrization", default=True): Bool,
},
"plots": {"html_template": str},
"exp": {
"code": str,
"data": str,
"models": str,
"metrics": str,
"params": str,
"plots": str,
"live": str,
},
}
+4 -5
View File
@@ -12,8 +12,6 @@ from dvc.utils import fix_env, is_binary
logger = logging.getLogger(__name__)
CREATE_NO_WINDOW = 0x08000000 # only available since Python 3.7 in subprocess.
def _popen(cmd, **kwargs):
prefix = [sys.executable]
@@ -28,6 +26,7 @@ def _popen(cmd, **kwargs):
def _spawn_windows(cmd, env):
from subprocess import (
CREATE_NEW_PROCESS_GROUP,
CREATE_NO_WINDOW,
STARTF_USESHOWWINDOW,
STARTUPINFO,
)
@@ -49,17 +48,17 @@ def _spawn_posix(cmd, env):
# with PyInstaller has trouble with SystemExit exception and throws
# errors such as "[26338] Failed to execute script __main__"
try:
pid = os.fork()
pid = os.fork() # pylint: disable=no-member
if pid > 0:
return
except OSError:
logger.exception("failed at first fork")
os._exit(1) # pylint: disable=protected-access
os.setsid()
os.setsid() # pylint: disable=no-member
try:
pid = os.fork()
pid = os.fork() # pylint: disable=no-member
if pid > 0:
os._exit(0) # pylint: disable=protected-access
except OSError:
+6 -5
View File
@@ -58,9 +58,9 @@ class DataCloud:
from dvc.fs import get_cloud_fs
from dvc.objects.db import get_odb
cls, config, path_info = get_cloud_fs(self.repo, name=name)
config["tmp_dir"] = self.repo.tmp_dir
return get_odb(cls(**config), path_info, **config)
cls, config, fs_path = get_cloud_fs(self.repo, name=name)
config["tmp_dir"] = self.repo.index_db_dir
return get_odb(cls(**config), fs_path, **config)
def push(
self,
@@ -156,5 +156,6 @@ class DataCloud:
)
def get_url_for(self, remote, checksum):
remote_odb = self.get_remote_odb(remote)
return str(remote_odb.hash_to_path_info(checksum))
odb = self.get_remote_odb(remote)
path = odb.hash_to_path(checksum)
return odb.fs.unstrip_protocol(path)
+22 -2
View File
@@ -1,3 +1,4 @@
import logging
import os
from collections import defaultdict
@@ -10,6 +11,8 @@ from dvc.utils.serialize import LOADERS, ParseError
from .base import Dependency
logger = logging.getLogger(__name__)
class MissingParamsError(DvcException):
pass
@@ -89,10 +92,10 @@ class ParamsDependency(Dependency):
if not self.exists:
return {}
suffix = self.path_info.suffix.lower()
suffix = self.repo.fs.path.suffix(self.fs_path).lower()
loader = LOADERS[suffix]
try:
return loader(self.path_info, fs=self.repo.fs)
return loader(self.fs_path, fs=self.repo.fs)
except ParseError as exc:
raise BadParamFileError(
f"Unable to read parameters from '{self}'"
@@ -133,3 +136,20 @@ class ParamsDependency(Dependency):
)
return HashInfo(self.PARAM_PARAMS, info)
def save(self):
if not self.exists:
raise self.DoesNotExistError(self)
if not self.isfile and not self.isdir:
raise self.IsNotFileOrDirError(self)
if self.is_empty:
logger.warning(f"'{self}' is empty.")
self.ignore()
if self.metric or self.plot:
self.verify_metric()
self.hash_info = self.get_hash()
+9 -13
View File
@@ -5,8 +5,6 @@ from typing import TYPE_CHECKING, Dict, Optional, Set, Tuple
from voluptuous import Required
from dvc.path_info import PathInfo
from .base import Dependency
if TYPE_CHECKING:
@@ -34,7 +32,7 @@ class RepoDependency(Dependency):
self._staged_objs: Dict[str, "HashFile"] = {}
super().__init__(stage, *args, **kwargs)
def _parse_path(self, fs, path_info):
def _parse_path(self, fs, fs_path):
return None
@property
@@ -63,14 +61,14 @@ class RepoDependency(Dependency):
return {self.PARAM_PATH: self.def_path, self.PARAM_REPO: self.def_repo}
def download(self, to, jobs=None):
from dvc.checkout import checkout
from dvc.objects.checkout import checkout
for odb, objs in self.get_used_objs().items():
self.repo.cloud.pull(objs, jobs=jobs, odb=odb)
obj = self.get_obj()
checkout(
to.path_info,
to.fs_path,
to.fs,
obj,
self.repo.odb.local,
@@ -114,11 +112,11 @@ class RepoDependency(Dependency):
if locked and self.def_repo.get(self.PARAM_REV_LOCK) is None:
self.def_repo[self.PARAM_REV_LOCK] = rev
path_info = PathInfo(repo.root_dir) / str(self.def_path)
path = os.path.abspath(os.path.join(repo.root_dir, self.def_path))
if not obj_only:
try:
for odb, obj_ids in repo.used_objs(
[os.fspath(path_info)],
[path],
force=True,
jobs=kwargs.get("jobs"),
recursive=True,
@@ -132,9 +130,9 @@ class RepoDependency(Dependency):
pass
try:
staging, staged_obj = stage(
staging, _, staged_obj = stage(
local_odb,
path_info,
path,
repo.repo_fs,
local_odb.fs.PARAM_CHECKSUM,
)
@@ -148,9 +146,7 @@ class RepoDependency(Dependency):
self._staged_objs[rev] = staged_obj
used_obj_ids[staging].add(staged_obj.hash_info)
if isinstance(staged_obj, Tree):
used_obj_ids[staging].update(
entry.hash_info for _, entry in staged_obj
)
used_obj_ids[staging].update(oid for _, _, oid in staged_obj)
return used_obj_ids, staged_obj
def _check_circular_import(self, odb, obj_ids):
@@ -166,7 +162,7 @@ class RepoDependency(Dependency):
for hash_info in obj_ids:
if hash_info.isdir:
tree = Tree.load(odb, hash_info)
yield from (odb.get(entry.hash_info) for _, entry in tree)
yield from (odb.get(oid) for _, _, oid in tree)
else:
yield odb.get(hash_info)
+38 -56
View File
@@ -1,10 +1,7 @@
import collections
import contextlib
import logging
import os
from typing import TYPE_CHECKING, Any, Union
from voluptuous import MultipleInvalid
from typing import TYPE_CHECKING, Any, Callable, Tuple, TypeVar, Union
from dvc.exceptions import DvcException
from dvc.parsing.versions import LOCKFILE_VERSION, SCHEMA_KWD
@@ -12,23 +9,18 @@ from dvc.stage import serialize
from dvc.stage.exceptions import (
StageFileBadNameError,
StageFileDoesNotExistError,
StageFileFormatError,
StageFileIsNotDvcFileError,
)
from dvc.types import AnyPath
from dvc.utils import relpath
from dvc.utils.collections import apply_diff
from dvc.utils.serialize import (
dump_yaml,
modify_yaml,
parse_yaml,
parse_yaml_for_update,
)
from dvc.utils.serialize import dump_yaml, modify_yaml
if TYPE_CHECKING:
from dvc.repo import Repo
logger = logging.getLogger(__name__)
_T = TypeVar("_T")
DVC_FILE = "Dvcfile"
DVC_FILE_SUFFIX = ".dvc"
@@ -45,10 +37,6 @@ class FileIsGitIgnored(DvcException):
)
class LockfileCorruptedError(DvcException):
pass
class ParametrizedDumpError(DvcException):
pass
@@ -72,7 +60,7 @@ def is_lock_file(path):
def is_git_ignored(repo, path):
from dvc.fs.local import LocalFileSystem
from dvc.scm.base import NoSCMError
from dvc.scm import NoSCMError
try:
return isinstance(repo.fs, LocalFileSystem) and repo.scm.is_ignored(
@@ -96,7 +84,7 @@ def check_dvcfile_path(repo, path):
class FileMixin:
SCHEMA = None
SCHEMA: Callable[[_T], _T]
def __init__(self, repo, path, verify=True, **kwargs):
self.repo = repo
@@ -138,7 +126,11 @@ class FileMixin:
if self._is_git_ignored():
raise FileIsGitIgnored(self.path)
def _load(self):
def load(self, **kwargs: Any) -> Any:
d, _ = self._load(**kwargs)
return d
def _load(self, **kwargs: Any) -> Tuple[Any, str]:
# it raises the proper exceptions by priority:
# 1. when the file doesn't exists
# 2. filename is not a DVC file
@@ -155,18 +147,23 @@ class FileMixin:
raise StageFileIsNotDvcFileError(self.path)
self._check_gitignored()
with self.repo.fs.open(self.path, encoding="utf-8") as fd:
stage_text = fd.read()
d = parse_yaml(stage_text, self.path)
return self.validate(d, self.relpath), stage_text
return self._load_yaml(**kwargs)
@classmethod
def validate(cls, d, fname=None):
assert isinstance(cls.SCHEMA, collections.abc.Callable)
try:
return cls.SCHEMA(d) # pylint: disable=not-callable
except MultipleInvalid as exc:
raise StageFileFormatError(f"'{fname}' format error: {exc}")
def validate(cls, d: _T, fname: str = None) -> _T:
from dvc.utils.strictyaml import validate
return validate(d, cls.SCHEMA, path=fname) # type: ignore[arg-type]
def _load_yaml(self, **kwargs: Any) -> Tuple[Any, str]:
from dvc.utils import strictyaml
return strictyaml.load(
self.path,
self.SCHEMA, # type: ignore[arg-type]
self.repo.fs,
**kwargs,
)
def remove(self, force=False): # pylint: disable=unused-argument
with contextlib.suppress(FileNotFoundError):
@@ -202,7 +199,7 @@ class SingleStageFile(FileMixin):
check_dvcfile_path(self.repo, self.path)
logger.debug(f"Saving information to '{relpath(self.path)}'.")
dump_yaml(self.path, serialize.to_single_stage_file(stage))
self.repo.scm.track_file(self.relpath)
self.repo.scm_context.track_file(self.relpath)
def remove_stage(self, stage): # pylint: disable=unused-argument
self.remove()
@@ -271,7 +268,7 @@ class PipelineFile(FileMixin):
else:
data["stages"].update(stage_data)
self.repo.scm.track_file(self.relpath)
self.repo.scm_context.track_file(self.relpath)
@property
def stage(self):
@@ -298,10 +295,7 @@ class PipelineFile(FileMixin):
if not self.exists():
return
with open(self.path, encoding="utf-8") as f:
d = parse_yaml_for_update(f.read(), self.path)
self.validate(d, self.path)
d, _ = self._load_yaml(round_trip=True)
if stage.name not in d.get("stages", {}):
return
@@ -343,34 +337,25 @@ def migrate_lock_v1_to_v2(d, version_info):
d["stages"] = stages
def lockfile_schema(data: _T) -> _T:
schema = get_lockfile_schema(data)
return schema(data)
class Lockfile(FileMixin):
@classmethod
def validate(cls, d, fname=None):
schema = get_lockfile_schema(d)
try:
return schema(d)
except MultipleInvalid as exc:
raise StageFileFormatError(f"'{fname}' format error: {exc}")
SCHEMA = staticmethod(lockfile_schema) # type: ignore[assignment]
def _verify_filename(self):
pass # lockfile path is hardcoded, so no need to verify here
def _load(self):
def _load(self, **kwargs: Any):
try:
return super()._load()
return super()._load(**kwargs)
except StageFileDoesNotExistError:
# we still need to account for git-ignored dvc.lock file
# even though it may not exist or have been .dvcignored
self._check_gitignored()
return {}, ""
except StageFileFormatError as exc:
raise LockfileCorruptedError(
f"Lockfile '{self.relpath}' is corrupted."
) from exc
def load(self):
d, _ = self._load()
return d
@property
def latest_version_info(self):
@@ -403,16 +388,13 @@ class Lockfile(FileMixin):
data["stages"].update(stage_data)
if modified:
self.repo.scm.track_file(self.relpath)
self.repo.scm_context.track_file(self.relpath)
def remove_stage(self, stage):
if not self.exists():
return
with open(self.path, encoding="utf-8") as f:
d = parse_yaml_for_update(f.read(), self.path)
self.validate(d, self.path)
d, _ = self._load_yaml(round_trip=True)
version = LOCKFILE_VERSION.from_dict(d)
data = d if version == LOCKFILE_VERSION.V1 else d.get("stages", {})
if stage.name not in data:
+11 -18
View File
@@ -216,18 +216,6 @@ class DvcIgnoreInCollectedDirError(DvcException):
)
class GitHookAlreadyExistsError(DvcException):
def __init__(self, hook_name):
from dvc.utils import format_link
super().__init__(
"Hook '{}' already exists. Please refer to {} for more "
"info.".format(
hook_name, format_link("https://man.dvc.org/install")
)
)
class FileTransferError(DvcException):
_METHOD = "transfer"
@@ -305,7 +293,7 @@ class PathMissingError(DvcException):
class RemoteCacheRequiredError(DvcException):
def __init__(self, path_info):
def __init__(self, scheme, fs_path):
from dvc.utils import format_link
super().__init__(
@@ -314,8 +302,8 @@ class RemoteCacheRequiredError(DvcException):
"existing cache on '{}' remote. See {} for information on how "
"to set up remote cache."
).format(
path_info,
path_info.scheme,
fs_path,
scheme,
format_link("https://man.dvc.org/config#cache"),
)
)
@@ -350,12 +338,12 @@ class CacheLinkError(DvcException):
)
)
def __init__(self, path_infos):
def __init__(self, fs_paths):
msg = "No possible cache link types for '{}'. {}".format(
", ".join([str(path) for path in path_infos]), self.SUPPORT_LINK
", ".join(fs_paths), self.SUPPORT_LINK
)
super().__init__(msg)
self.path_infos = path_infos
self.fs_paths = fs_paths
class CircularImportError(DvcException):
@@ -364,3 +352,8 @@ class CircularImportError(DvcException):
f"'{dep}' contains invalid circular import. "
f"DVC repo '{a}' already imports from '{b}'."
)
class PrettyDvcException(DvcException):
def __pretty_exc__(self, **kwargs):
"""Print prettier exception message."""
+10 -6
View File
@@ -16,17 +16,20 @@ from dvc.exceptions import (
PathMissingError,
)
from dvc.repo import Repo
from dvc.scm import CloneError, map_scm_exception
from dvc.utils import relpath
logger = logging.getLogger(__name__)
@contextmanager
@map_scm_exception()
def external_repo(
url, rev=None, for_write=False, cache_dir=None, cache_types=None, **kwargs
):
from scmrepo.git import Git
from dvc.config import NoRemoteError
from dvc.scm.git import Git
logger.debug("Creating external repo %s@%s", url, rev)
path = _cached_clone(url, rev, for_write=for_write)
@@ -173,7 +176,7 @@ def _clone_default_branch(url, rev, for_write=False):
The cloned is reactualized with git pull unless rev is a known sha.
"""
from dvc.scm.git import Git
from scmrepo.git import Git
clone_path, shallow = CLONES.get(url, (None, False))
@@ -198,14 +201,15 @@ def _clone_default_branch(url, rev, for_write=False):
logger.debug("erepo: git pull '%s'", url)
git.pull()
else:
from dvc.scm import clone
logger.debug("erepo: git clone '%s' to a temporary dir", url)
clone_path = tempfile.mkdtemp("dvc-clone")
if not for_write and rev and not Git.is_sha(rev):
# If rev is a tag or branch name try shallow clone first
from dvc.scm.base import CloneError
try:
git = Git.clone(url, clone_path, shallow_branch=rev)
git = clone(url, clone_path, shallow_branch=rev)
shallow = True
logger.debug(
"erepo: using shallow clone for branch '%s'", rev
@@ -213,7 +217,7 @@ def _clone_default_branch(url, rev, for_write=False):
except CloneError:
pass
if not git:
git = Git.clone(url, clone_path)
git = clone(url, clone_path)
shallow = False
CLONES[url] = (clone_path, shallow)
finally:
@@ -237,7 +241,7 @@ def _unshallow(git):
def _git_checkout(repo_path, rev):
from dvc.scm.git import Git
from scmrepo.git import Git
logger.debug("erepo: git checkout %s@%s", repo_path, rev)
git = Git(repo_path)
+10 -11
View File
@@ -1,4 +1,3 @@
import posixpath
from urllib.parse import urlparse
from ..scheme import Schemes
@@ -39,7 +38,7 @@ def get_fs_cls(remote_conf, scheme=None):
return FS_MAP.get(scheme, LocalFileSystem)
def get_fs_config(config, **kwargs):
def get_fs_config(repo, config, **kwargs):
name = kwargs.get("name")
if name:
try:
@@ -50,10 +49,10 @@ def get_fs_config(config, **kwargs):
raise RemoteNotFoundError(f"remote '{name}' doesn't exist")
else:
remote_conf = kwargs
return _resolve_remote_refs(config, remote_conf)
return _resolve_remote_refs(repo, config, remote_conf)
def _resolve_remote_refs(config, remote_conf):
def _resolve_remote_refs(repo, config, remote_conf):
# Support for cross referenced remotes.
# This will merge the settings, shadowing base ref with remote_conf.
# For example, having:
@@ -79,8 +78,10 @@ def _resolve_remote_refs(config, remote_conf):
if parsed.scheme != "remote":
return remote_conf
base = get_fs_config(config, name=parsed.netloc)
url = posixpath.join(base["url"], parsed.path.lstrip("/"))
base = get_fs_config(repo, config, name=parsed.netloc)
cls, _, _ = get_cloud_fs(repo, **base)
relpath = parsed.path.lstrip("/").replace("/", cls.sep)
url = cls.sep.join((base["url"], relpath))
return {**base, **remote_conf, "url": url}
@@ -91,7 +92,7 @@ def get_cloud_fs(repo, **kwargs):
repo_config = repo.config if repo else {}
core_config = repo_config.get("core", {})
remote_conf = get_fs_config(repo_config, **kwargs)
remote_conf = get_fs_config(repo, repo_config, **kwargs)
try:
remote_conf = SCHEMA["remote"][str](remote_conf)
except Invalid as exc:
@@ -113,10 +114,8 @@ def get_cloud_fs(repo, **kwargs):
remote_conf["gdrive_credentials_tmp_dir"] = repo.tmp_dir
url = remote_conf.pop("url")
path_info = cls.PATH_CLS(
cls._strip_protocol(url) # pylint:disable=protected-access
)
fs_path = cls._strip_protocol(url) # pylint:disable=protected-access
extras = cls._get_kwargs_from_urls(url) # pylint:disable=protected-access
conf = {**extras, **remote_conf} # remote config takes priority
return cls, conf, path_info
return cls, conf, fs_path
+6 -5
View File
@@ -2,7 +2,6 @@ from dataclasses import dataclass, field
from typing import TYPE_CHECKING, List
from dvc.output import Output
from dvc.path_info import PathInfo
if TYPE_CHECKING:
from dvc.repo import Repo
@@ -16,7 +15,7 @@ class Metadata:
"""
# required field
path_info: PathInfo
fs_path: str
repo: "Repo"
# computed fields
@@ -47,11 +46,13 @@ class Metadata:
else:
out = self.outs[0]
# or, the path itself could be an output
self.is_output = self.path_info == out.path_info
self.is_output = self.fs_path == out.fs_path
# or, a directory must have an output somewhere deep inside it
if not self.is_output:
self.contains_outputs = out.path_info.isin(self.path_info)
self.contains_outputs = self.repo.fs.path.isin(
out.fs_path, self.fs_path
)
# or, the path could be a part of an output, i.e. inside of an output
self.part_of_output = not self.is_output and not self.contains_outputs
@@ -69,4 +70,4 @@ class Metadata:
return not self.isdir
def __str__(self):
return f"Metadata: {self.path_info}"
return f"Metadata: {self.fs_path}"
+7 -7
View File
@@ -7,7 +7,6 @@ from fsspec.utils import infer_storage_options
from funcy import cached_property, memoize, wrap_prop
from dvc.exceptions import DvcException
from dvc.path_info import CloudURLInfo
from dvc.scheme import Schemes
from dvc.utils import format_link
@@ -41,7 +40,6 @@ def _az_config():
# pylint:disable=abstract-method
class AzureFileSystem(CallbackMixin, ObjectFSWrapper):
scheme = Schemes.AZURE
PATH_CLS = CloudURLInfo
PARAM_CHECKSUM = "etag"
DETAIL_FIELDS = frozenset(("etag", "size"))
REQUIRES = {
@@ -52,12 +50,14 @@ class AzureFileSystem(CallbackMixin, ObjectFSWrapper):
@classmethod
def _strip_protocol(cls, path: str):
bucket = infer_storage_options(path).get("host")
if bucket:
return path
opts = infer_storage_options(path)
if opts.get("host"):
return "{host}{path}".format(**opts)
bucket = _az_config().get("storage", "container_name", None)
return f"azure://{bucket}"
return _az_config().get("storage", "container_name", None)
def unstrip_protocol(self, path: str) -> str:
return "azure://" + path.lstrip("/")
@staticmethod
def _get_kwargs_from_urls(urlpath):
+43 -51
View File
@@ -4,13 +4,12 @@ import os
from concurrent.futures import ThreadPoolExecutor, as_completed
from functools import partialmethod
from multiprocessing import cpu_count
from typing import Any, ClassVar, Dict, FrozenSet, Optional
from typing import ClassVar, Dict, FrozenSet, Optional
from funcy import cached_property
from tqdm.utils import CallbackIOWrapper
from dvc.exceptions import DvcException
from dvc.path_info import URLInfo
from dvc.progress import DEFAULT_CALLBACK, FsspecCallback
from dvc.ui import ui
from dvc.utils import tmp_fname
@@ -37,12 +36,11 @@ class RemoteMissingDepsError(DvcException):
pass
class BaseFileSystem:
class FileSystem:
sep = "/"
scheme = "base"
REQUIRES: ClassVar[Dict[str, str]] = {}
PATH_CLS = URLInfo # type: Any
_JOBS = 4 * cpu_count()
CHECKSUM_DIR_SUFFIX = ".dir"
@@ -70,10 +68,19 @@ class BaseFileSystem:
def config(self):
return self._config
@cached_property
def path(self):
from .path import Path
return Path(self.sep)
@classmethod
def _strip_protocol(cls, path: str):
return path
def unstrip_protocol(self, path):
return path
@staticmethod
def _get_kwargs_from_urls(urlpath): # pylint:disable=unused-argument
return {}
@@ -130,36 +137,36 @@ class BaseFileSystem:
f"dependencies: {missing}. {hint}"
)
def checksum(self, path_info) -> str:
def checksum(self, path) -> str:
raise NotImplementedError
def open(self, path_info, mode: str = "r", encoding: str = None, **kwargs):
def open(self, path, mode: str = "r", encoding: str = None, **kwargs):
raise RemoteActionNotImplemented("open", self.scheme)
def exists(self, path_info) -> bool:
def exists(self, path) -> bool:
raise NotImplementedError
# pylint: disable=unused-argument
def isdir(self, path_info):
def isdir(self, path):
"""Optional: Overwrite only if the remote has a way to distinguish
between a directory and a file.
"""
return False
def isfile(self, path_info):
def isfile(self, path):
"""Optional: Overwrite only if the remote has a way to distinguish
between a directory and a file.
"""
return True
def isexec(self, path_info):
def isexec(self, path):
"""Optional: Overwrite only if the remote has a way to distinguish
between executable and non-executable file.
"""
return False
def iscopy(self, path_info):
def iscopy(self, path):
"""Check if this file is an independent copy."""
return False # We can't be sure by default
@@ -167,34 +174,28 @@ class BaseFileSystem:
"""Return a generator with (root, dirs, files)."""
raise NotImplementedError
def walk_files(self, path_info, **kwargs):
"""Return a generator with `PathInfo`s to all the files.
def find(self, path, prefix=None):
"""Return a generator with `str`s to all the files.
Optional kwargs:
prefix (bool): If true `path_info` will be treated as a prefix
prefix (bool): If true `path` will be treated as a prefix
rather than directory path.
"""
raise NotImplementedError
def ls(self, path_info, detail=False):
raise RemoteActionNotImplemented("ls", self.scheme)
def find(self, path_info, detail=False, prefix=None):
raise RemoteActionNotImplemented("find", self.scheme)
def is_empty(self, path_info):
def is_empty(self, path):
return False
def info(self, path_info):
def info(self, path):
raise NotImplementedError
def getsize(self, path_info):
return self.info(path_info).get("size")
def getsize(self, path):
return self.info(path).get("size")
def remove(self, path_info):
def remove(self, path):
raise RemoteActionNotImplemented("remove", self.scheme)
def makedirs(self, path_info, **kwargs):
def makedirs(self, path, **kwargs):
"""Optional: Implement only if the remote needs to create
directories before copying/linking/moving data
"""
@@ -223,12 +224,6 @@ class BaseFileSystem:
return False
return hash_.endswith(cls.CHECKSUM_DIR_SUFFIX)
@cached_property
def _local_fs(self):
from dvc.fs import LocalFileSystem
return LocalFileSystem()
def upload(
self,
from_info,
@@ -244,11 +239,10 @@ class BaseFileSystem:
if not hasattr(self, method):
raise RemoteActionNotImplemented(method, self.scheme)
if to_info.scheme != self.scheme:
raise NotImplementedError
if not is_file_obj:
desc = desc or from_info.name
from .local import localfs
desc = desc or localfs.path.name(from_info)
stack = contextlib.ExitStack()
if not callback:
@@ -260,7 +254,7 @@ class BaseFileSystem:
**pbar_args,
)
stack.enter_context(pbar)
callback = pbar.as_callback(self._local_fs, from_info)
callback = pbar.as_callback()
if total:
callback.set_size(total)
@@ -274,9 +268,6 @@ class BaseFileSystem:
# pylint: disable=no-member
return self.upload_fobj(wrapped, to_info, size=total)
if from_info.scheme != "local":
raise NotImplementedError
logger.debug("Uploading '%s' to '%s'", from_info, to_info)
# pylint: disable=no-member
return self.put_file(
@@ -294,18 +285,14 @@ class BaseFileSystem:
_only_file=False,
**kwargs,
):
from .local import localfs
if not hasattr(self, "get_file"):
raise RemoteActionNotImplemented("get_file", self.scheme)
if from_info.scheme != self.scheme:
raise NotImplementedError
if to_info.scheme != "local":
raise NotImplementedError
download_dir = not _only_file and self.isdir(from_info)
desc = name or to_info.name
desc = name or localfs.path.name(to_info)
stack = contextlib.ExitStack()
if not callback:
pbar_kwargs = {"unit": "Files"} if download_dir else {}
@@ -317,7 +304,7 @@ class BaseFileSystem:
**pbar_kwargs,
)
stack.enter_context(pbar)
callback = pbar.as_callback(self, from_info)
callback = pbar.as_callback()
with stack:
if download_dir:
@@ -336,13 +323,16 @@ class BaseFileSystem:
jobs=None,
**kwargs,
):
from_infos = list(self.walk_files(from_info, **kwargs))
from .local import localfs
from_infos = list(self.find(from_info, **kwargs))
if not from_infos:
makedirs(to_info, exist_ok=True)
return None
to_infos = (
to_info / info.relative_to(from_info) for info in from_infos
localfs.path.join(to_info, *self.path.relparts(info, from_info))
for info in from_infos
)
callback.set_size(len(from_infos))
@@ -375,7 +365,9 @@ class BaseFileSystem:
to_info,
callback=DEFAULT_CALLBACK,
):
makedirs(to_info.parent, exist_ok=True)
from .local import localfs
makedirs(localfs.path.parent(to_info), exist_ok=True)
tmp_file = tmp_fname(to_info)
logger.debug("Downloading '%s' to '%s'", from_info, to_info)
+62 -60
View File
@@ -3,21 +3,20 @@ import os
import typing
from dvc.exceptions import OutputNotFoundError
from dvc.path_info import PathInfo
from dvc.utils import relpath
from ..progress import DEFAULT_CALLBACK
from ._metadata import Metadata
from .base import BaseFileSystem
from .base import FileSystem
if typing.TYPE_CHECKING:
from dvc.output import Output
from dvc.types import AnyPath
logger = logging.getLogger(__name__)
class DvcFileSystem(BaseFileSystem): # pylint:disable=abstract-method
class DvcFileSystem(FileSystem): # pylint:disable=abstract-method
"""DVC repo fs.
Args:
@@ -49,28 +48,25 @@ class DvcFileSystem(BaseFileSystem): # pylint:disable=abstract-method
return outs
def _get_granular_hash(
self, path_info: PathInfo, out: "Output", remote=None
):
assert isinstance(path_info, PathInfo)
def _get_granular_hash(self, path: "AnyPath", out: "Output", remote=None):
# NOTE: use string paths here for performance reasons
key = tuple(relpath(path_info, out.path_info).split(os.sep))
key = tuple(relpath(path, out.fs_path).split(os.sep))
out.get_dir_cache(remote=remote)
if out.obj is None:
raise FileNotFoundError
obj = out.obj.trie.get(key)
if obj:
return obj.hash_info
(_, oid) = out.obj.trie.get(key) or (None, None)
if oid:
return oid
raise FileNotFoundError
def _get_fs_path(self, path: PathInfo, remote=None):
def _get_fs_path(self, path: "AnyPath", remote=None):
try:
outs = self._find_outs(path, strict=False)
except OutputNotFoundError as exc:
raise FileNotFoundError from exc
if len(outs) != 1 or (
outs[0].is_dir_checksum and path == outs[0].path_info
outs[0].is_dir_checksum and path == outs[0].fs_path
):
raise IsADirectoryError
@@ -90,18 +86,20 @@ class DvcFileSystem(BaseFileSystem): # pylint:disable=abstract-method
checksum = self._get_granular_hash(path, out).value
else:
checksum = out.hash_info.value
remote_info = remote_odb.hash_to_path_info(checksum)
return remote_odb.fs, remote_info
remote_fs_path = remote_odb.hash_to_path(checksum)
return remote_odb.fs, remote_fs_path
if out.is_dir_checksum:
checksum = self._get_granular_hash(path, out).value
cache_path = out.odb.hash_to_path_info(checksum).url
cache_path = out.odb.fs.unstrip_protocol(
out.odb.hash_to_path(checksum)
)
else:
cache_path = out.cache_path
return out.odb.fs, cache_path
def open( # type: ignore
self, path: PathInfo, mode="r", encoding=None, **kwargs
self, path: str, mode="r", encoding=None, **kwargs
): # pylint: disable=arguments-renamed
fs, fspath = self._get_fs_path(path, **kwargs)
return fs.open(fspath, mode=mode, encoding=encoding)
@@ -120,18 +118,18 @@ class DvcFileSystem(BaseFileSystem): # pylint:disable=abstract-method
except FileNotFoundError:
return False
def check_isdir(self, path_info, outs):
def check_isdir(self, path, outs):
if len(outs) != 1:
return True
out = outs[0]
if not out.is_dir_checksum:
return out.path_info != path_info
if out.path_info == path_info:
return out.fs_path != path
if out.fs_path == path:
return True
try:
self._get_granular_hash(path_info, out)
self._get_granular_hash(path, out)
return False
except FileNotFoundError:
return True
@@ -153,42 +151,46 @@ class DvcFileSystem(BaseFileSystem): # pylint:disable=abstract-method
def _add_dir(self, trie, out, **kwargs):
self._fetch_dir(out, **kwargs)
base = out.path_info.parts
for key, _ in out.obj: # noqa: B301
base = out.fs.path.parts(out.fs_path)
for key, _, _ in out.obj: # noqa: B301
trie[base + key] = None
def _walk(self, root, trie, topdown=True, **kwargs):
dirs = set()
files = []
out = trie.get(root.parts)
root_parts = self.path.parts(root)
out = trie.get(root_parts)
if out and out.is_dir_checksum:
self._add_dir(trie, out, **kwargs)
root_len = len(root.parts)
for key, out in trie.iteritems(prefix=root.parts): # noqa: B301
if key == root.parts:
continue
root_len = len(root_parts)
try:
for key, out in trie.iteritems(prefix=root_parts): # noqa: B301
if key == root_parts:
continue
name = key[root_len]
if len(key) > root_len + 1 or (out and out.is_dir_checksum):
dirs.add(name)
continue
name = key[root_len]
if len(key) > root_len + 1 or (out and out.is_dir_checksum):
dirs.add(name)
continue
files.append(name)
files.append(name)
except KeyError:
pass
assert topdown
dirs = list(dirs)
yield root.fspath, dirs, files
yield root, dirs, files
for dname in dirs:
yield from self._walk(root / dname, trie)
yield from self._walk(self.path.join(root, dname), trie)
def walk(self, top, topdown=True, onerror=None, **kwargs):
from pygtrie import Trie
assert topdown
root = PathInfo(os.path.abspath(top))
root = os.path.abspath(top)
try:
meta = self.metadata(root)
except FileNotFoundError:
@@ -203,18 +205,18 @@ class DvcFileSystem(BaseFileSystem): # pylint:disable=abstract-method
trie = Trie()
for out in meta.outs:
trie[out.path_info.parts] = out
trie[out.fs.path.parts(out.fs_path)] = out
if out.is_dir_checksum and root.isin_or_eq(out.path_info):
if out.is_dir_checksum and self.path.isin_or_eq(root, out.fs_path):
self._add_dir(trie, out, **kwargs)
yield from self._walk(root, trie, topdown=topdown, **kwargs)
def walk_files(self, path_info, **kwargs):
for root, _, files in self.walk(path_info):
def find(self, path, prefix=None):
for root, _, files in self.walk(path):
for fname in files:
# NOTE: os.path.join is ~5.5 times slower
yield PathInfo(f"{root}{os.sep}{fname}")
yield f"{root}{os.sep}{fname}"
def isdvc(self, path, recursive=False, strict=True):
try:
@@ -225,35 +227,35 @@ class DvcFileSystem(BaseFileSystem): # pylint:disable=abstract-method
recurse = recursive or not strict
return meta.output_exists if recurse else meta.is_output
def isexec(self, path_info): # pylint: disable=unused-argument
def isexec(self, path): # pylint: disable=unused-argument
return False
def metadata(self, path_info):
path_info = PathInfo(os.path.abspath(path_info))
def metadata(self, fs_path):
abspath = os.path.abspath(fs_path)
try:
outs = self._find_outs(path_info, strict=False, recursive=True)
outs = self._find_outs(abspath, strict=False, recursive=True)
except OutputNotFoundError as exc:
raise FileNotFoundError from exc
meta = Metadata(path_info=path_info, outs=outs, repo=self.repo)
meta.isdir = meta.isdir or self.check_isdir(meta.path_info, meta.outs)
meta = Metadata(fs_path=abspath, outs=outs, repo=self.repo)
meta.isdir = meta.isdir or self.check_isdir(meta.fs_path, meta.outs)
return meta
def info(self, path_info):
meta = self.metadata(path_info)
def info(self, path):
meta = self.metadata(path)
ret = {"type": "directory" if meta.isdir else "file"}
if meta.is_output and len(meta.outs) == 1 and meta.outs[0].hash_info:
hash_info = meta.outs[0].hash_info
ret["size"] = hash_info.size
ret[hash_info.name] = hash_info.value
out = meta.outs[0]
ret["size"] = out.meta.size
ret[out.hash_info.name] = out.hash_info.value
elif meta.part_of_output:
(out,) = meta.outs
key = path_info.relative_to(out.path_info).parts
obj = out.obj.trie.get(key)
if obj:
ret["size"] = obj.size
ret[obj.hash_info.name] = obj.hash_info.value
key = self.path.parts(self.path.relpath(path, out.fs_path))
(obj_meta, oid) = out.obj.trie.get(key) or (None, None)
if oid:
ret["size"] = obj_meta.size if obj_meta else 0
ret[oid.name] = oid.value
return ret
@@ -265,8 +267,8 @@ class DvcFileSystem(BaseFileSystem): # pylint:disable=abstract-method
path, to_file, callback=callback, **kwargs
)
def checksum(self, path_info):
info = self.info(path_info)
def checksum(self, path):
info = self.info(path)
md5 = info.get("md5")
if md5:
return md5
+95 -128
View File
@@ -1,18 +1,28 @@
import os
import shutil
from functools import lru_cache
from typing import IO, TYPE_CHECKING, Any, Dict, Iterator, Optional, overload
from funcy import cached_property
from tqdm.utils import CallbackIOWrapper
from dvc.progress import DEFAULT_CALLBACK
from .base import BaseFileSystem
from .local import LocalFileSystem
from .base import FileSystem
FSPath = str
AnyFSPath = str
if TYPE_CHECKING:
from typing_extensions import Literal
# An info() entry, might evolve to a TypedDict
# in the future (e.g for properly type 'size' etc).
Entry = Dict[str, Any]
# pylint: disable=no-member
class FSSpecWrapper(BaseFileSystem):
class FSSpecWrapper(FileSystem):
TRAVERSE_PREFIX_LEN = 2
def __init__(self, **kwargs):
@@ -20,18 +30,8 @@ class FSSpecWrapper(BaseFileSystem):
self.fs_args = {"skip_instance_cache": True}
self.fs_args.update(self._prepare_credentials(**kwargs))
@cached_property
def fs(self):
raise NotImplementedError
def _with_bucket(self, path):
return str(path)
def _strip_bucket(self, entry):
return entry
@staticmethod
def _get_kwargs_from_urls(urlpath):
def _get_kwargs_from_urls(urlpath: str) -> "Dict[str, Any]":
from fsspec.utils import infer_storage_options
options = infer_storage_options(urlpath)
@@ -39,139 +39,117 @@ class FSSpecWrapper(BaseFileSystem):
options.pop("protocol", None)
return options
def _strip_buckets(self, entries, detail=False):
for entry in entries:
if detail:
entry = self._entry_hook(entry.copy())
entry["name"] = self._strip_bucket(entry["name"])
else:
entry = self._strip_bucket(entry)
yield entry
def _entry_hook(self, entry):
"""Simple hook method to be overridden when wanted to process
entries within info() and ls(detail=True) calls"""
return entry
@cached_property
def fs(self):
raise NotImplementedError
def _prepare_credentials(
self, **config
): # pylint: disable=unused-argument
self, **config: Dict[str, Any] # pylint: disable=unused-argument
) -> Dict[str, Any]:
"""Prepare the arguments for authentication to the
host filesystem"""
return {}
def _isdir(self, path_info):
return self.fs.isdir(self._with_bucket(path_info))
def _isdir(self, path: AnyFSPath) -> bool:
return self.fs.isdir(path)
def isdir(self, path_info):
def isdir(self, path: AnyFSPath) -> bool:
try:
return self._isdir(path_info)
return self._isdir(path)
except FileNotFoundError:
return False
def isfile(self, path_info):
def isfile(self, path: AnyFSPath) -> bool:
try:
return not self._isdir(path_info)
return not self._isdir(path)
except FileNotFoundError:
return False
def is_empty(self, path_info):
entry = self.info(path_info)
def is_empty(self, path: AnyFSPath) -> bool:
entry = self.info(path)
if entry["type"] == "directory":
return not self.fs.ls(self._with_bucket(path_info))
return not self.fs.ls(path)
return entry["size"] == 0
def open(
self, path_info, mode="r", **kwargs
): # pylint: disable=arguments-differ
return self.fs.open(self._with_bucket(path_info), mode=mode)
self,
path: AnyFSPath,
mode: str = "r",
encoding: Optional[str] = None,
**kwargs,
) -> "IO": # pylint: disable=arguments-differ
return self.fs.open(path, mode=mode)
def checksum(self, path_info):
return self.fs.checksum(self._with_bucket(path_info))
def checksum(self, path: AnyFSPath) -> str:
return self.fs.checksum(path)
def copy(self, from_info, to_info):
self.makedirs(to_info.parent)
self.fs.copy(self._with_bucket(from_info), self._with_bucket(to_info))
def copy(self, from_info: AnyFSPath, to_info: AnyFSPath) -> None:
self.makedirs(self.path.parent(to_info))
self.fs.copy(from_info, to_info)
def exists(self, path_info) -> bool:
return self.fs.exists(self._with_bucket(path_info))
def exists(self, path: AnyFSPath) -> bool:
return self.fs.exists(path)
def ls(self, path_info, detail=False):
path = self._with_bucket(path_info)
files = self.fs.ls(path, detail=detail)
yield from self._strip_buckets(files, detail=detail)
@overload
def ls(
self, path: AnyFSPath, detail: "Literal[True]"
) -> "Iterator[Entry]":
...
# pylint: disable=unused-argument
def find(self, path_info, detail=False, prefix=None):
path = self._with_bucket(path_info)
files = self.fs.find(path, detail=detail)
if detail:
files = files.values()
@overload
def ls(self, path: AnyFSPath, detail: "Literal[False]") -> Iterator[str]:
...
yield from self._strip_buckets(files, detail=detail)
def ls(self, path, detail=False):
yield from self.fs.ls(path, detail=detail)
def walk_files(self, path_info, **kwargs):
for file in self.find(path_info, **kwargs):
yield path_info.replace(path=file)
def find(self, path, prefix=None):
yield from self.fs.find(path)
def move(self, from_info, to_info):
self.fs.move(self._with_bucket(from_info), self._with_bucket(to_info))
def move(self, from_info: AnyFSPath, to_info: AnyFSPath) -> None:
self.fs.move(from_info, to_info)
def remove(self, path_info):
self.fs.rm_file(self._with_bucket(path_info))
def remove(self, path: AnyFSPath) -> None:
self.fs.rm_file(path)
def info(self, path_info):
info = self.fs.info(self._with_bucket(path_info)).copy()
info = self._entry_hook(info)
info["name"] = self._strip_bucket(info["name"])
return info
def info(self, path: AnyFSPath) -> "Entry":
return self.fs.info(path)
def makedirs(self, path_info, **kwargs):
self.fs.makedirs(
self._with_bucket(path_info), exist_ok=kwargs.pop("exist_ok", True)
)
def makedirs(self, path: AnyFSPath, **kwargs) -> None:
self.fs.makedirs(path, exist_ok=kwargs.pop("exist_ok", True))
def put_file(
self, from_file, to_info, callback=DEFAULT_CALLBACK, **kwargs
):
self.fs.put_file(
from_file, self._with_bucket(to_info), callback=callback, **kwargs
)
self.fs.invalidate_cache(self._with_bucket(to_info.parent))
self,
from_file: AnyFSPath,
to_info: AnyFSPath,
callback: Any = DEFAULT_CALLBACK,
**kwargs,
) -> None:
self.fs.put_file(from_file, to_info, callback=callback, **kwargs)
self.fs.invalidate_cache(self.path.parent(to_info))
def get_file(
self, from_info, to_info, callback=DEFAULT_CALLBACK, **kwargs
):
self.fs.get_file(
self._with_bucket(from_info), to_info, callback=callback, **kwargs
)
self,
from_info: AnyFSPath,
to_info: AnyFSPath,
callback: Any = DEFAULT_CALLBACK,
**kwargs,
) -> None:
self.fs.get_file(from_info, to_info, callback=callback, **kwargs)
def upload_fobj(self, fobj, to_info, **kwargs):
self.makedirs(to_info.parent)
def upload_fobj(self, fobj: IO, to_info: AnyFSPath, **kwargs) -> None:
self.makedirs(self.path.parent(to_info))
with self.open(to_info, "wb") as fdest:
shutil.copyfileobj(fobj, fdest, length=fdest.blocksize)
shutil.copyfileobj(
fobj, fdest, length=getattr(fdest, "blocksize", None)
)
# pylint: disable=abstract-method
class ObjectFSWrapper(FSSpecWrapper):
TRAVERSE_PREFIX_LEN = 3
@lru_cache(512)
def _with_bucket(self, path):
if isinstance(path, self.PATH_CLS):
return f"{path.bucket}/{path.path}"
return path
def _strip_bucket(self, entry):
try:
bucket, path = entry.split("/", 1)
except ValueError:
# If there is no path attached, only returns
# the bucket (top-level).
bucket, path = entry, None
return path or bucket
def makedirs(self, path_info, **kwargs):
def makedirs(self, path: AnyFSPath, **kwargs) -> None:
# For object storages make this method a no-op. The original
# fs.makedirs() method will only check if the bucket exists
# and create if it doesn't though we don't want to support
@@ -179,42 +157,37 @@ class ObjectFSWrapper(FSSpecWrapper):
# simply ignore all mkdir()/makedirs() calls.
return None
def _isdir(self, path_info):
def _isdir(self, path: AnyFSPath) -> bool:
# Directory in object storages are interpreted differently
# among different fsspec providers, so this logic is a temporary
# measure for us to adapt as of now. It checks whether it is a
# directory (as in a prefix with contents) or whether it is an empty
# file where it's name ends with a forward slash
entry = self.info(path_info)
entry = self.info(path)
return entry["type"] == "directory" or (
entry["size"] == 0
and entry["type"] == "file"
and entry["name"].endswith("/")
)
def find(self, path_info, detail=False, prefix=None):
def find(self, path, prefix=None):
if prefix:
path = self._with_bucket(path_info.parent)
files = self.fs.find(
path, detail=detail, prefix=path_info.parts[-1]
)
with_prefix = self.path.parent(path)
files = self.fs.find(with_prefix, prefix=self.path.parts(path)[-1])
else:
path = self._with_bucket(path_info)
files = self.fs.find(path, detail=detail)
if detail:
files = list(files.values())
with_prefix = path
files = self.fs.find(path)
# When calling find() on a file, it returns the same file in a list.
# For object-based storages, the same behavior applies to empty
# directories since they are represented as files. This condition
# checks whether we should yield an empty list (if it is an empty
# directory) or just yield the file itself.
if len(files) == 1 and files[0] == path and self.isdir(path_info):
if len(files) == 1 and files[0] == with_prefix and self.isdir(path):
return None
yield from self._strip_buckets(files, detail=detail)
yield from files
# pylint: disable=arguments-differ
@@ -231,16 +204,10 @@ class NoDirectoriesMixin:
def walk(self, *args, **kwargs):
raise NotImplementedError
def walk_files(self, *args, **kwargs):
raise NotImplementedError
def ls(self, *args, **kwargs):
raise NotImplementedError
_LOCAL_FS = LocalFileSystem()
class CallbackMixin:
"""Provides callback support for the filesystem that don't support yet."""
@@ -253,13 +220,13 @@ class CallbackMixin:
):
"""Add compatibility support for Callback."""
# pylint: disable=protected-access
self.makedirs(to_info.parent)
self.makedirs(self.path.parent(to_info))
size = os.path.getsize(from_file)
with open(from_file, "rb") as fobj:
callback.set_size(size)
wrapped = CallbackIOWrapper(callback.relative_update, fobj)
self.upload_fobj(wrapped, to_info)
self.fs.invalidate_cache(self._with_bucket(to_info.parent))
self.fs.invalidate_cache(self.path.parent(to_info))
def get_file(
self,
+23 -75
View File
@@ -1,14 +1,10 @@
import logging
import os
import posixpath
import re
import threading
from urllib.parse import urlparse
from funcy import cached_property, retry, wrap_prop
from funcy import cached_property, wrap_prop
from dvc.exceptions import DvcException
from dvc.path_info import CloudURLInfo
from dvc.scheme import Schemes
from dvc.utils import format_link, tmp_fname
@@ -34,54 +30,8 @@ class GDriveAuthError(DvcException):
super().__init__(message)
def _gdrive_retry(func):
def should_retry(exc):
from pydrive2.files import ApiRequestError
if not isinstance(exc, ApiRequestError):
return False
error_code = exc.error.get("code", 0)
result = False
if 500 <= error_code < 600:
result = True
if error_code == 403:
result = exc.GetField("reason") in [
"userRateLimitExceeded",
"rateLimitExceeded",
]
if result:
logger.debug(f"Retrying GDrive API call, error: {exc}.")
return result
# 16 tries, start at 0.5s, multiply by golden ratio, cap at 20s
return retry(
16,
timeout=lambda a: min(0.5 * 1.618 ** a, 20),
filter_errors=should_retry,
)(func)
class GDriveURLInfo(CloudURLInfo):
def __init__(self, url):
super().__init__(url)
# GDrive URL host part is case sensitive,
# we are restoring it here.
p = urlparse(url)
self.host = p.netloc
assert self.netloc == self.host
# Normalize path. Important since we have a cache (path to ID)
# and don't want to deal with different variations of path in it.
self._spath = re.sub("/{2,}", "/", self._spath.rstrip("/"))
class GDriveFileSystem(FSSpecWrapper): # pylint:disable=abstract-method
scheme = Schemes.GDRIVE
PATH_CLS = GDriveURLInfo
PARAM_CHECKSUM = "checksum"
REQUIRES = {"pydrive2": "pydrive2"}
# Always prefer traverse for GDrive since API usage quotas are a concern.
@@ -95,11 +45,14 @@ class GDriveFileSystem(FSSpecWrapper): # pylint:disable=abstract-method
DEFAULT_GDRIVE_CLIENT_SECRET = "a1Fz59uTpVNeG_VGuSKDLJXv"
def __init__(self, **config):
from fsspec.utils import infer_storage_options
super().__init__(**config)
self.path_info = self.PATH_CLS(config["url"])
self.url = config["url"]
opts = infer_storage_options(self.url)
if not self.path_info.bucket:
if not opts["host"]:
raise DvcException(
"Empty GDrive URL '{}'. Learn more at {}".format(
config["url"],
@@ -107,8 +60,8 @@ class GDriveFileSystem(FSSpecWrapper): # pylint:disable=abstract-method
)
)
self._bucket = self.path_info.bucket
self._path = self.path_info.path
self._bucket = opts["host"]
self._path = opts["path"].lstrip("/")
self._trash_only = config.get("gdrive_trash_only")
self._use_service_account = config.get("gdrive_use_service_account")
self._service_account_user_email = config.get(
@@ -136,6 +89,17 @@ class GDriveFileSystem(FSSpecWrapper): # pylint:disable=abstract-method
)
)
@classmethod
def _strip_protocol(cls, path):
from fsspec.utils import infer_storage_options
opts = infer_storage_options(path)
return "{host}{path}".format(**opts)
def unstrip_protocol(self, path):
return f"gdrive://{path}"
@staticmethod
def _get_kwargs_from_urls(urlpath):
return {"url": urlpath}
@@ -219,7 +183,7 @@ class GDriveFileSystem(FSSpecWrapper): # pylint:disable=abstract-method
temporary_save_path = self._gdrive_service_credentials_path
if is_credentials_temp:
with open(temporary_save_path, "w") as cred_file:
with open(temporary_save_path, "w", encoding="utf-8") as cred_file:
cred_file.write(
os.getenv(GDriveFileSystem.GDRIVE_CREDENTIALS_DATA)
)
@@ -285,27 +249,11 @@ class GDriveFileSystem(FSSpecWrapper): # pylint:disable=abstract-method
os.remove(temporary_save_path)
return _GDriveFileSystem(
self._with_bucket(self.path_info),
f"{self._bucket}/{self._path}",
gauth,
trash_only=self._trash_only,
)
def _with_bucket(self, path):
if isinstance(path, self.PATH_CLS):
return posixpath.join(path.bucket, path.path)
return super()._with_bucket(path)
def _strip_bucket(self, entry):
try:
bucket, path = entry.split("/", 1)
except ValueError:
# If there is no path attached, only returns
# the bucket (top-level).
bucket, path = entry, None
return path or bucket
def upload_fobj(self, fobj, to_info, **kwargs):
rpath = self._with_bucket(to_info)
self.makedirs(os.path.dirname(rpath))
return self.fs.upload_fobj(fobj, rpath, **kwargs)
self.makedirs(os.path.dirname(to_info))
return self.fs.upload_fobj(fobj, to_info, **kwargs)
+51 -115
View File
@@ -1,136 +1,72 @@
import errno
import os
import threading
from typing import TYPE_CHECKING, Any, Callable
from tqdm.utils import CallbackIOWrapper
from funcy import cached_property, wrap_prop
from dvc.utils import is_exec, relpath
from .fsspec_wrapper import AnyFSPath, FSSpecWrapper
from ..progress import DEFAULT_CALLBACK
from .base import BaseFileSystem
if TYPE_CHECKING:
from scmrepo.fs import GitFileSystem as FsspecGitFileSystem
from scmrepo.git import Git
from scmrepo.git.objects import GitTrie
class GitFileSystem(BaseFileSystem): # pylint:disable=abstract-method
class GitFileSystem(FSSpecWrapper): # pylint:disable=abstract-method
"""Proxies the repo file access methods to Git objects"""
sep = os.sep
scheme = "local"
def __init__(self, root_dir, trie):
def __init__(
self,
path: str = None,
rev: str = None,
scm: "Git" = None,
trie: "GitTrie" = None,
**kwargs: Any,
) -> None:
from dvc.scm import resolve_rev
super().__init__()
self._root = root_dir
self.trie = trie
self.fs_args.update(
{
"path": path,
"rev": rev,
"scm": scm,
"trie": trie,
"rev_resolver": resolve_rev,
**kwargs,
}
)
@wrap_prop(threading.Lock())
@cached_property
def fs(self) -> "FsspecGitFileSystem":
from scmrepo.fs import GitFileSystem as FsspecGitFileSystem
return FsspecGitFileSystem(**self.fs_args)
@property
def rev(self):
return self.trie.rev
def rev(self) -> str:
return self.fs.rev
def _get_key(self, path):
if isinstance(path, str):
if not os.path.isabs(path):
relparts = path.split(os.sep)
else:
relparts = relpath(path, self._root).split(os.sep)
else:
relparts = path.relative_to(self._root).parts
if relparts == ["."]:
return ()
return tuple(relparts)
def isexec(self, path: AnyFSPath) -> bool:
from dvc.utils import is_exec
def open(
self, path, mode="r", encoding=None, **kwargs
): # pylint: disable=arguments-renamed
# NOTE: this is incorrect, we need to use locale to determine default
# encoding.
encoding = encoding or "utf-8"
key = self._get_key(path)
try:
return self.trie.open(key, mode=mode, encoding=encoding)
except KeyError as exc:
msg = os.strerror(errno.ENOENT) + f"in branch '{self.rev}'"
raise FileNotFoundError(errno.ENOENT, msg, path) from exc
except IsADirectoryError as exc:
raise IsADirectoryError(
errno.EISDIR, os.strerror(errno.EISDIR), path
) from exc
def exists(self, path_info) -> bool:
key = self._get_key(path_info)
return self.trie.exists(key)
def isdir(self, path_info) -> bool:
key = self._get_key(path_info)
return self.trie.isdir(key)
def isfile(self, path_info) -> bool:
key = self._get_key(path_info)
return self.trie.isfile(key)
def walk(self, top, topdown=True, onerror=None, **kwargs):
"""Directory tree generator.
See `os.walk` for the docs. Differences:
- no support for symlinks
"""
if not self.isdir(top):
if onerror:
if self.exists(top):
exc = NotADirectoryError(
errno.ENOTDIR, os.strerror(errno.ENOTDIR), top
)
else:
exc = FileNotFoundError(
errno.ENOENT, os.strerror(errno.ENOENT), top
)
onerror(exc)
return []
key = self._get_key(top)
for prefix, dirs, files in self.trie.walk(key, topdown=topdown):
if prefix:
root = os.path.join(self._root, os.sep.join(prefix))
else:
root = self._root
yield root, dirs, files
def isexec(self, path_info):
if not self.exists(path_info):
return is_exec(self.info(path)["mode"])
except FileNotFoundError:
return False
mode = self.info(path_info)["mode"]
return is_exec(mode)
def isfile(self, path: AnyFSPath) -> bool:
return self.fs.isfile(path)
def info(self, path_info):
key = self._get_key(path_info)
try:
return self.trie.info(key)
except KeyError:
raise FileNotFoundError(
errno.ENOENT, os.strerror(errno.ENOENT), path_info
)
def checksum(self, path_info):
return self.info(path_info)["sha"]
def walk_files(self, path_info, **kwargs):
for root, _, files in self.walk(path_info, **kwargs):
for file in files:
# NOTE: os.path.join is ~5.5 times slower
yield f"{root}{os.sep}{file}"
def get_file(
self, from_info, to_file, callback=DEFAULT_CALLBACK, **kwargs
def walk(
self,
top: AnyFSPath,
topdown: bool = True,
onerror: Callable[[OSError], None] = None,
**kwargs: Any,
):
import shutil
total = self.getsize(from_info)
if total:
callback.set_size(total)
with self.open(from_info, "rb", **kwargs) as from_fobj:
with open(to_file, "wb+") as to_fobj:
wrapped = CallbackIOWrapper(
callback.relative_update, from_fobj
)
shutil.copyfileobj(wrapped, to_fobj)
return self.fs.walk(top, topdown=topdown, onerror=onerror, **kwargs)
-9
View File
@@ -1,9 +1,7 @@
import base64
import threading
from funcy import cached_property, wrap_prop
from dvc.path_info import CloudURLInfo
from dvc.scheme import Schemes
# pylint:disable=abstract-method
@@ -12,11 +10,9 @@ from .fsspec_wrapper import CallbackMixin, ObjectFSWrapper
class GSFileSystem(CallbackMixin, ObjectFSWrapper):
scheme = Schemes.GS
PATH_CLS = CloudURLInfo
REQUIRES = {"gcsfs": "gcsfs"}
PARAM_CHECKSUM = "etag"
DETAIL_FIELDS = frozenset(("etag", "size"))
TRAVERSE_PREFIX_LEN = 2
def _prepare_credentials(self, **config):
login_info = {"consistency": None}
@@ -24,11 +20,6 @@ class GSFileSystem(CallbackMixin, ObjectFSWrapper):
login_info["token"] = config.get("credentialpath")
return login_info
def _entry_hook(self, entry):
if "etag" in entry:
entry["etag"] = base64.b64decode(entry["etag"]).hex()
return entry
@wrap_prop(threading.Lock())
@cached_property
def fs(self):
+68 -251
View File
@@ -1,282 +1,99 @@
import errno
import io
import logging
import os
import re
import shutil
import subprocess
from collections import deque
from contextlib import closing, contextmanager
import threading
from tqdm.utils import CallbackIOWrapper
from funcy import cached_property, wrap_prop
from dvc.hash_info import HashInfo
from dvc.progress import DEFAULT_CALLBACK
from dvc.scheme import Schemes
from dvc.utils import fix_env, tmp_fname
from dvc.utils import fix_env
from .base import BaseFileSystem, RemoteCmdError
from .pool import get_connection
from .fsspec_wrapper import CallbackMixin, FSSpecWrapper
logger = logging.getLogger(__name__)
CHECKSUM_REGEX = re.compile(r".*\t.*\t(?P<checksum>.*)")
def _hadoop_fs(cmd, user=None):
cmd = "hadoop fs -" + cmd
if user:
cmd = f"HADOOP_USER_NAME={user} " + cmd
# NOTE: close_fds doesn't work with redirected stdin/stdout/stderr.
# See https://github.com/iterative/dvc/issues/1197.
close_fds = os.name != "nt"
executable = os.getenv("SHELL") if os.name != "nt" else None
p = subprocess.Popen(
cmd,
shell=True,
close_fds=close_fds,
executable=executable,
env=fix_env(os.environ),
stdin=subprocess.PIPE,
stdout=subprocess.PIPE,
stderr=subprocess.PIPE,
)
out, err = p.communicate()
if p.returncode != 0:
raise RemoteCmdError("hdfs", cmd, p.returncode, err)
return out.decode("utf-8")
def _group(regex, s, gname):
match = re.match(regex, s)
assert match is not None
return match.group(gname)
def _hadoop_fs_checksum(path_info):
# NOTE: pyarrow doesn't support checksum, so we need to use hadoop
regex = r".*\t.*\t(?P<checksum>.*)"
stdout = _hadoop_fs(f"checksum {path_info.url}", user=path_info.user)
return _group(regex, stdout, "checksum")
class HDFSFileSystem(BaseFileSystem):
# pylint: disable=abstract-method
class HDFSFileSystem(CallbackMixin, FSSpecWrapper):
scheme = Schemes.HDFS
REQUIRES = {"pyarrow": "pyarrow"}
REGEX = r"^hdfs://((?P<user>.*)@)?.*$"
REQUIRES = {"fsspec": "fsspec", "pyarrow": "pyarrow"}
PARAM_CHECKSUM = "checksum"
TRAVERSE_PREFIX_LEN = 2
BLOCK_SIZE = 2 ** 26 # 128MB
@classmethod
def _strip_protocol(cls, path: str) -> str:
from fsspec.utils import infer_storage_options
def __init__(self, **config):
super().__init__(**config)
return infer_storage_options(path)["path"].lstrip("/")
self.host = config["host"]
self.user = config.get("user")
self.port = config.get("port")
self.kerb_ticket = config.get("kerb_ticket")
def unstrip_protocol(self, path: str) -> str:
host = self.fs_args["host"]
port = self.fs_args["port"]
path = path.lstrip("/")
return f"hdfs://{host}:{port}/{path}"
@staticmethod
def _get_kwargs_from_urls(urlpath):
from fsspec.implementations.hdfs import PyArrowHDFS
from fsspec.implementations.arrow import HadoopFileSystem
# pylint:disable=protected-access
return PyArrowHDFS._get_kwargs_from_urls(urlpath)
return HadoopFileSystem._get_kwargs_from_urls(urlpath)
def hdfs(self, path_info):
import pyarrow.fs
def _prepare_credentials(self, **config):
return config
# NOTE: HadoopFileSystem is not meant to be closed by us and doesn't
# have close() method or alternative, so we add a noop one to satisfy
# our connection pool.
class HDFSConnection(pyarrow.fs.HadoopFileSystem):
def close(self):
pass
@wrap_prop(threading.Lock())
@cached_property
def fs(self):
from fsspec.implementations.arrow import HadoopFileSystem
return get_connection(
HDFSConnection,
path_info.host,
path_info.port,
user=path_info.user,
kerb_ticket=self.kerb_ticket,
return HadoopFileSystem(**self.fs_args)
def checksum(self, path):
return self._checksum(path)
def _checksum(self, path, **kwargs):
# PyArrow doesn't natively support retrieving the
# checksum, so we have to use hadoop fs
url = self.unstrip_protocol(path)
result = self._run_command(
f"checksum {url}",
env=fix_env(os.environ),
user=self.fs_args["user"],
)
if result is None:
return None
@contextmanager
def open(self, path_info, mode="r", encoding=None, **kwargs):
assert mode in {"r", "rt", "rb"}
match = CHECKSUM_REGEX.match(result)
if match is None:
return None
try:
with self.hdfs(path_info) as hdfs, closing(
hdfs.open_input_stream(path_info.path)
) as fd:
if mode == "rb":
yield fd
else:
yield io.TextIOWrapper(fd, encoding=encoding)
except OSError as e:
# Empty .errno and not specific enough error class in pyarrow,
# see https://issues.apache.org/jira/browse/ARROW-6248
if "file does not exist" in str(e):
raise FileNotFoundError(*e.args)
raise
return match.group("checksum")
def exists(self, path_info) -> bool:
assert not isinstance(path_info, list)
assert path_info.scheme == "hdfs"
with self.hdfs(path_info) as hdfs:
import pyarrow.fs
def _run_command(self, cmd, env=None, user=None):
cmd = "hadoop fs -" + cmd
if user:
cmd = f"HADOOP_USER_NAME={user} " + cmd
file_info = hdfs.get_file_info(path_info.path)
return file_info.type != pyarrow.fs.FileType.NotFound
# NOTE: close_fds doesn't work with redirected stdin/stdout/stderr.
# See https://github.com/iterative/dvc/issues/1197.
close_fds = os.name != "nt"
def _walk(self, hdfs, root, topdown=True):
import posixpath
from pyarrow.fs import FileSelector, FileType
dirs = deque()
nondirs = deque()
selector = FileSelector(root)
for entry in hdfs.get_file_info(selector):
if entry.type == FileType.Directory:
dirs.append(entry.base_name)
else:
nondirs.append(entry.base_name)
if topdown:
yield root, dirs, nondirs
for dname in dirs:
# NOTE: posixpath.join() is slower
yield from self._walk(
hdfs, f"{root}{posixpath.sep}{dname}", topdown=topdown
)
if not topdown:
yield root, dirs, nondirs
def walk(self, top, topdown=True, onerror=None, **kwargs):
if not self.isdir(top):
return
with self.hdfs(top) as hdfs:
for root, dnames, fnames in self._walk(
hdfs, top.path, topdown=topdown
):
yield top.replace(path=root), dnames, fnames
def walk_files(self, path_info, **kwargs):
for root, _, fnames in self.walk(path_info):
yield from (root / fname for fname in fnames)
def remove(self, path_info):
if path_info.scheme != "hdfs":
raise NotImplementedError
if self.exists(path_info):
logger.debug(f"Removing {path_info.path}")
with self.hdfs(path_info) as hdfs:
import pyarrow.fs
file_info = hdfs.get_file_info(path_info.path)
if file_info.type == pyarrow.fs.FileType.Directory:
hdfs.delete_dir(path_info.path)
else:
hdfs.delete_file(path_info.path)
def makedirs(self, path_info, **kwargs):
with self.hdfs(path_info) as hdfs:
# NOTE: fs.create_dir creates parents by default
hdfs.create_dir(path_info.path)
def copy(self, from_info, to_info, **_kwargs):
# NOTE: hdfs.copy_file is not supported yet in pyarrow
with self.hdfs(to_info) as hdfs:
# NOTE: this is how `hadoop fs -cp` works too: it copies through
# your local machine.
with closing(hdfs.open_input_stream(from_info.path)) as from_fobj:
tmp_info = to_info.parent / tmp_fname(to_info.name)
try:
with closing(
hdfs.open_output_stream(tmp_info.path)
) as tmp_fobj:
shutil.copyfileobj(from_fobj, tmp_fobj)
hdfs.move(tmp_info.path, to_info.path)
except Exception:
self.remove(tmp_info)
raise
def isfile(self, path_info):
with self.hdfs(path_info) as hdfs:
import pyarrow.fs
file_info = hdfs.get_file_info(path_info.path)
return file_info.type == pyarrow.fs.FileType.File
def isdir(self, path_info):
with self.hdfs(path_info) as hdfs:
import pyarrow.fs
file_info = hdfs.get_file_info(path_info.path)
return file_info.type == pyarrow.fs.FileType.Directory
def info(self, path_info):
with self.hdfs(path_info) as hdfs:
from pyarrow.fs import FileType
file_info = hdfs.get_file_info(path_info.path)
if file_info.type is FileType.Directory:
kind = "directory"
elif file_info.type is FileType.File:
kind = "file"
else:
raise FileNotFoundError(
errno.ENOENT, os.strerror(errno.ENOENT), path_info
)
return {"size": file_info.size, "type": kind}
def checksum(self, path_info):
return HashInfo(
"checksum",
_hadoop_fs_checksum(path_info),
size=self.getsize(path_info),
executable = os.getenv("SHELL") if os.name != "nt" else None
p = subprocess.Popen(
cmd,
shell=True,
close_fds=close_fds,
executable=executable,
env=env or os.environ,
stdin=subprocess.PIPE,
stdout=subprocess.PIPE,
stderr=subprocess.PIPE,
)
out, err = p.communicate()
def upload_fobj(self, fobj, to_info, **kwargs):
with self.hdfs(to_info) as hdfs:
with hdfs.open_output_stream(to_info.path) as fdest:
shutil.copyfileobj(fobj, fdest, self.BLOCK_SIZE)
def put_file(
self, from_file, to_info, callback=DEFAULT_CALLBACK, **kwargs
):
with self.hdfs(to_info) as hdfs:
hdfs.create_dir(to_info.parent.path)
tmp_file = tmp_fname(to_info.path)
total: int = os.path.getsize(from_file)
callback.set_size(total)
with open(from_file, "rb") as fobj:
wrapped = CallbackIOWrapper(callback.relative_update, fobj)
with hdfs.open_output_stream(tmp_file) as sobj:
shutil.copyfileobj(wrapped, sobj, self.BLOCK_SIZE)
hdfs.move(tmp_file, to_info.path)
def get_file(
self, from_info, to_file, callback=DEFAULT_CALLBACK, **kwargs
):
with self.hdfs(from_info) as hdfs:
file_info = hdfs.get_file_info(from_info.path)
total = file_info.size
if total:
callback.set_size(total)
with hdfs.open_input_stream(from_info.path) as sobj:
with open(to_file, "wb+") as fobj:
wrapped = CallbackIOWrapper(callback.relative_update, sobj)
shutil.copyfileobj(wrapped, fobj, self.BLOCK_SIZE)
if p.returncode != 0:
raise subprocess.CalledProcessError(p.returncode, cmd, out, err)
else:
return out.decode("utf-8")
+19 -6
View File
@@ -1,12 +1,13 @@
import threading
from typing import Any
from funcy import cached_property, memoize, wrap_with
from dvc import prompt
from dvc.path_info import HTTPURLInfo
from dvc.progress import DEFAULT_CALLBACK
from dvc.scheme import Schemes
from .fsspec_wrapper import FSSpecWrapper, NoDirectoriesMixin
from .fsspec_wrapper import AnyFSPath, FSSpecWrapper, NoDirectoriesMixin
@wrap_with(threading.Lock())
@@ -34,7 +35,6 @@ def make_context(ssl_verify):
# pylint: disable=abstract-method
class HTTPFileSystem(NoDirectoriesMixin, FSSpecWrapper):
scheme = Schemes.HTTP
PATH_CLS = HTTPURLInfo
PARAM_CHECKSUM = "checksum"
REQUIRES = {"aiohttp": "aiohttp", "aiohttp-retry": "aiohttp_retry"}
CAN_TRAVERSE = False
@@ -87,6 +87,9 @@ class HTTPFileSystem(NoDirectoriesMixin, FSSpecWrapper):
ssl=make_context(config["ssl_verify"])
)
# Allow reading proxy configurations from the environment.
client_kwargs["trust_env"] = True
credentials["get_client"] = self.get_client
self.upload_method = config.get("method", "POST")
return credentials
@@ -99,6 +102,7 @@ class HTTPFileSystem(NoDirectoriesMixin, FSSpecWrapper):
attempts=self.SESSION_RETRIES,
factor=self.SESSION_BACKOFF_FACTOR,
max_timeout=self.REQUEST_TIMEOUT,
exceptions=[aiohttp.ClientError],
)
# The default timeout for the aiohttp is 300 seconds
@@ -123,6 +127,15 @@ class HTTPFileSystem(NoDirectoriesMixin, FSSpecWrapper):
return _HTTPFileSystem(**self.fs_args)
def _entry_hook(self, entry):
entry["checksum"] = entry.get("ETag") or entry.get("Content-MD5")
return entry
def unstrip_protocol(self, path: str) -> str:
return path
def put_file(
self,
from_file: AnyFSPath,
to_info: AnyFSPath,
callback: Any = DEFAULT_CALLBACK,
**kwargs,
) -> None:
kwargs.setdefault("method", self.upload_method)
super().put_file(from_file, to_info, callback=callback, **kwargs)
+46 -51
View File
@@ -1,23 +1,21 @@
import logging
import os
from dvc.path_info import PathInfo
from dvc.scheme import Schemes
from dvc.system import System
from dvc.utils import is_exec, tmp_fname
from dvc.utils.fs import copy_fobj_to_file, copyfile, makedirs, move, remove
from ..progress import DEFAULT_CALLBACK
from .base import BaseFileSystem
from .base import FileSystem
logger = logging.getLogger(__name__)
class LocalFileSystem(BaseFileSystem):
class LocalFileSystem(FileSystem):
sep = os.sep
scheme = Schemes.LOCAL
PATH_CLS = PathInfo
PARAM_CHECKSUM = "md5"
PARAM_PATH = "path"
TRAVERSE_PREFIX_LEN = 2
@@ -29,28 +27,29 @@ class LocalFileSystem(BaseFileSystem):
self.fs = LocalFS()
@staticmethod
def open(path_info, mode="r", encoding=None, **kwargs):
return open(path_info, mode=mode, encoding=encoding)
def open(path, mode="r", encoding=None, **kwargs):
return open(path, mode=mode, encoding=encoding)
def exists(self, path_info) -> bool:
assert isinstance(path_info, str) or path_info.scheme == "local"
def exists(self, path) -> bool:
# TODO: replace this with os.path.exists once the problem is fixed on
# the fsspec https://github.com/intake/filesystem_spec/issues/742
return os.path.lexists(path_info)
return os.path.lexists(path)
def checksum(self, path_info) -> str:
return self.fs.checksum(path_info)
def checksum(self, path) -> str:
from fsspec.utils import tokenize
def isfile(self, path_info) -> bool:
return os.path.isfile(path_info)
st = os.stat(path)
def isdir(self, path_info) -> bool:
return os.path.isdir(path_info)
return str(int(tokenize([st.st_ino, st.st_mtime, st.st_size]), 16))
def iscopy(self, path_info):
return not (
System.is_symlink(path_info) or System.is_hardlink(path_info)
)
def isfile(self, path) -> bool:
return os.path.isfile(path)
def isdir(self, path) -> bool:
return os.path.isdir(path)
def iscopy(self, path):
return not (System.is_symlink(path) or System.is_hardlink(path))
def walk(self, top, topdown=True, onerror=None, **kwargs):
"""Directory fs generator.
@@ -63,45 +62,37 @@ class LocalFileSystem(BaseFileSystem):
):
yield os.path.normpath(root), dirs, files
def walk_files(self, path_info, **kwargs):
for root, _, files in self.walk(path_info):
def find(self, path, prefix=None):
for root, _, files in self.walk(path):
for file in files:
# NOTE: os.path.join is ~5.5 times slower
yield PathInfo(f"{root}{os.sep}{file}")
yield f"{root}{os.sep}{file}"
def is_empty(self, path_info):
if self.isfile(path_info) and os.path.getsize(path_info) == 0:
def is_empty(self, path):
if self.isfile(path) and os.path.getsize(path) == 0:
return True
if self.isdir(path_info) and len(os.listdir(path_info)) == 0:
if self.isdir(path) and len(os.listdir(path)) == 0:
return True
return False
def remove(self, path_info):
if isinstance(path_info, PathInfo):
if path_info.scheme != "local":
raise NotImplementedError
remove(path_info)
def remove(self, path):
remove(path)
def makedirs(self, path_info, **kwargs):
makedirs(path_info, exist_ok=kwargs.pop("exist_ok", True))
def makedirs(self, path, **kwargs):
makedirs(path, exist_ok=kwargs.pop("exist_ok", True))
def isexec(self, path_info):
mode = self.info(path_info)["mode"]
def isexec(self, path):
mode = self.info(path)["mode"]
return is_exec(mode)
def move(self, from_info, to_info):
if (
isinstance(from_info, PathInfo) and from_info.scheme != "local"
) or (isinstance(to_info, PathInfo) and to_info.scheme != "local"):
raise NotImplementedError
self.makedirs(to_info.parent)
self.makedirs(self.path.parent(to_info))
move(from_info, to_info)
def copy(self, from_info, to_info):
tmp_info = to_info.parent / tmp_fname("")
tmp_info = self.path.join(self.path.parent(to_info), tmp_fname(""))
try:
copyfile(from_info, tmp_info)
os.rename(tmp_info, to_info)
@@ -110,8 +101,8 @@ class LocalFileSystem(BaseFileSystem):
raise
def upload_fobj(self, fobj, to_info, **kwargs):
self.makedirs(to_info.parent)
tmp_info = to_info.parent / tmp_fname("")
self.makedirs(self.path.parent(to_info))
tmp_info = self.path.join(self.path.parent(to_info), tmp_fname(""))
try:
copy_fobj_to_file(fobj, tmp_info)
os.rename(tmp_info, to_info)
@@ -124,8 +115,8 @@ class LocalFileSystem(BaseFileSystem):
System.symlink(from_info, to_info)
@staticmethod
def is_symlink(path_info):
return System.is_symlink(path_info)
def is_symlink(path):
return System.is_symlink(path)
def hardlink(self, from_info, to_info):
# If there are a lot of empty files (which happens a lot in datasets),
@@ -150,20 +141,21 @@ class LocalFileSystem(BaseFileSystem):
System.hardlink(from_info, to_info)
@staticmethod
def is_hardlink(path_info):
return System.is_hardlink(path_info)
def is_hardlink(path):
return System.is_hardlink(path)
def reflink(self, from_info, to_info):
System.reflink(from_info, to_info)
def info(self, path_info):
return self.fs.info(path_info)
def info(self, path):
return self.fs.info(path)
def put_file(
self, from_file, to_info, callback=DEFAULT_CALLBACK, **kwargs
):
makedirs(to_info.parent, exist_ok=True)
tmp_file = tmp_fname(to_info)
parent = self.path.parent(to_info)
makedirs(parent, exist_ok=True)
tmp_file = self.path.join(parent, tmp_fname())
copyfile(from_file, tmp_file, callback=callback)
os.replace(tmp_file, to_info)
@@ -171,3 +163,6 @@ class LocalFileSystem(BaseFileSystem):
self, from_info, to_file, callback=DEFAULT_CALLBACK, **kwargs
):
copyfile(from_info, to_file, callback=callback)
localfs = LocalFileSystem()
-2
View File
@@ -2,7 +2,6 @@ import threading
from funcy import cached_property, wrap_prop
from dvc.path_info import CloudURLInfo
from dvc.scheme import Schemes
from .fsspec_wrapper import FSSpecWrapper
@@ -11,7 +10,6 @@ from .fsspec_wrapper import FSSpecWrapper
class MemoryFileSystem(FSSpecWrapper): # pylint:disable=abstract-method
scheme = Schemes.MEMORY
PARAM_CHECKSUM = "md5"
PATH_CLS = CloudURLInfo
TRAVERSE_PREFIX_LEN = 2
DEFAULT_BLOCKSIZE = 4096
-2
View File
@@ -4,7 +4,6 @@ import threading
from funcy import cached_property, wrap_prop
from dvc.path_info import CloudURLInfo
from dvc.scheme import Schemes
from .fsspec_wrapper import ObjectFSWrapper
@@ -15,7 +14,6 @@ logger = logging.getLogger(__name__)
# pylint:disable=abstract-method
class OSSFileSystem(ObjectFSWrapper):
scheme = Schemes.OSS
PATH_CLS = CloudURLInfo
REQUIRES = {"ossfs": "ossfs"}
PARAM_CHECKSUM = "etag"
COPY_POLL_SECONDS = 5
+94
View File
@@ -0,0 +1,94 @@
import ntpath
import posixpath
class Path:
def __init__(self, sep):
if sep == posixpath.sep:
self.flavour = posixpath
elif sep == ntpath.sep:
self.flavour = ntpath
else:
raise ValueError(f"unsupported separator '{sep}'")
def join(self, *parts):
return self.flavour.join(*parts)
def parts(self, path):
drive, path = self.flavour.splitdrive(path)
ret = []
while True:
path, part = self.flavour.split(path)
if part:
ret.append(part)
continue
if path:
ret.append(path)
break
ret.reverse()
if drive:
ret = [drive] + ret
return tuple(ret)
def parent(self, path):
return self.flavour.dirname(path)
def parents(self, path):
parts = self.parts(path)
return tuple(
self.join(*parts[:length])
for length in range(len(parts) - 1, 0, -1)
)
def name(self, path):
return self.parts(path)[-1]
def suffix(self, path):
name = self.name(path)
_, dot, suffix = name.partition(".")
return dot + suffix
def with_name(self, path, name):
parts = list(self.parts(path))
parts[-1] = name
return self.join(*parts)
def with_suffix(self, path, suffix):
parts = list(self.parts(path))
real_path, _, _ = parts[-1].partition(".")
parts[-1] = real_path + suffix
return self.join(*parts)
def isin(self, left, right):
left_parts = self.parts(left)
right_parts = self.parts(right)
left_len = len(left_parts)
right_len = len(right_parts)
return left_len > right_len and left_parts[:right_len] == right_parts
def isin_or_eq(self, left, right):
return left == right or self.isin(left, right)
def overlaps(self, left, right):
# pylint: disable=arguments-out-of-order
return self.isin_or_eq(left, right) or self.isin(right, left)
def relpath(self, path, base):
assert len(path) > len(base)
assert path.startswith(base)
normpath = path.rstrip(self.flavour.sep)
normbase = base.rstrip(self.flavour.sep)
return normpath[len(normbase) + 1 :]
def relparts(self, path, base):
return self.parts(self.relpath(path, base))
def as_posix(self, path):
return path.replace(self.flavour.sep, posixpath.sep)
+37 -43
View File
@@ -7,10 +7,8 @@ from typing import TYPE_CHECKING, Callable, Optional, Tuple, Type, Union
from funcy import lfilter, wrap_with
from dvc.path_info import PathInfo
from ..progress import DEFAULT_CALLBACK
from .base import BaseFileSystem
from .base import FileSystem
from .dvc import DvcFileSystem
if TYPE_CHECKING:
@@ -21,7 +19,7 @@ logger = logging.getLogger(__name__)
RepoFactory = Union[Callable[[str], "Repo"], Type["Repo"]]
class RepoFileSystem(BaseFileSystem): # pylint:disable=abstract-method
class RepoFileSystem(FileSystem): # pylint:disable=abstract-method
"""DVC + git-tracked files fs.
Args:
@@ -164,7 +162,7 @@ class RepoFileSystem(BaseFileSystem): # pylint:disable=abstract-method
if not prefix:
return None
parents = (parent.fspath for parent in PathInfo(path).parents)
parents = (parent for parent in self.path.parents(path))
dirs = [path] + list(takewhile(lambda p: p != prefix, parents))
dirs.reverse()
self._update(dirs, starting_repo=repo)
@@ -195,9 +193,7 @@ class RepoFileSystem(BaseFileSystem): # pylint:disable=abstract-method
repo_path = os.path.join(dir_path, Repo.DVC_DIR)
return self._main_repo.fs.isdir(repo_path)
def _get_fs_pair(
self, path
) -> Tuple[BaseFileSystem, Optional[DvcFileSystem]]:
def _get_fs_pair(self, path) -> Tuple[FileSystem, Optional[DvcFileSystem]]:
"""
Returns a pair of fss based on repo the path falls in, using prefix.
"""
@@ -217,34 +213,33 @@ class RepoFileSystem(BaseFileSystem): # pylint:disable=abstract-method
encoding = None
fs, dvc_fs = self._get_fs_pair(path)
path_info = PathInfo(path)
try:
return fs.open(path_info, mode=mode, encoding=encoding)
return fs.open(path, mode=mode, encoding=encoding)
except FileNotFoundError:
if not dvc_fs:
raise
return dvc_fs.open(path_info, mode=mode, encoding=encoding, **kwargs)
return dvc_fs.open(path, mode=mode, encoding=encoding, **kwargs)
def exists(self, path_info) -> bool:
fs, dvc_fs = self._get_fs_pair(path_info)
def exists(self, path) -> bool:
fs, dvc_fs = self._get_fs_pair(path)
if not dvc_fs:
return fs.exists(path_info)
return fs.exists(path)
if dvc_fs.repo.dvcignore.is_ignored(fs, path_info):
if dvc_fs.repo.dvcignore.is_ignored(fs, path):
return False
if fs.exists(path_info):
if fs.exists(path):
return True
try:
meta = dvc_fs.metadata(path_info)
meta = dvc_fs.metadata(path)
except FileNotFoundError:
return False
for out in meta.outs:
if fs.exists(out.path_info):
if fs.exists(out.fs_path):
return False
return True
@@ -271,7 +266,7 @@ class RepoFileSystem(BaseFileSystem): # pylint:disable=abstract-method
return False
for out in meta.outs:
if fs.exists(out.path_info):
if fs.exists(out.fs_path):
return False
return meta.isdir
@@ -303,15 +298,15 @@ class RepoFileSystem(BaseFileSystem): # pylint:disable=abstract-method
(out,) = meta.outs
assert len(meta.outs) == 1
if fs.exists(out.path_info):
if fs.exists(out.fs_path):
return False
return meta.isfile
def isexec(self, path_info):
fs, dvc_fs = self._get_fs_pair(path_info)
if dvc_fs and dvc_fs.exists(path_info):
return dvc_fs.isexec(path_info)
return fs.isexec(path_info)
def isexec(self, path):
fs, dvc_fs = self._get_fs_pair(path)
if dvc_fs and dvc_fs.exists(path):
return dvc_fs.isexec(path)
return fs.isexec(path)
def _dvc_walk(self, walk):
try:
@@ -444,10 +439,10 @@ class RepoFileSystem(BaseFileSystem): # pylint:disable=abstract-method
yield from self._walk(repo_walk, dvc_walk, dvcfiles=dvcfiles)
def walk_files(self, path_info, **kwargs):
for root, _, files in self.walk(path_info, **kwargs):
def find(self, path, prefix=None):
for root, _, files in self.walk(path):
for fname in files:
yield PathInfo(root) / fname
yield self.path.join(root, fname)
def get_file(
self, from_info, to_file, callback=DEFAULT_CALLBACK, **kwargs
@@ -467,18 +462,17 @@ class RepoFileSystem(BaseFileSystem): # pylint:disable=abstract-method
)
def metadata(self, path):
abspath = os.path.abspath(path)
path_info = PathInfo(abspath)
fs, dvc_fs = self._get_fs_pair(path_info)
fs_path = os.path.abspath(path)
fs, dvc_fs = self._get_fs_pair(fs_path)
dvc_meta = None
if dvc_fs:
with suppress(FileNotFoundError):
dvc_meta = dvc_fs.metadata(path_info)
dvc_meta = dvc_fs.metadata(fs_path)
info_result = None
with suppress(FileNotFoundError):
info_result = fs.info(path_info)
info_result = fs.info(fs_path)
if not info_result and not dvc_meta:
raise FileNotFoundError
@@ -486,8 +480,8 @@ class RepoFileSystem(BaseFileSystem): # pylint:disable=abstract-method
from ._metadata import Metadata
meta = dvc_meta or Metadata(
path_info=path_info,
repo=self._get_repo(abspath) or self._main_repo,
fs_path=fs_path,
repo=self._get_repo(fs_path) or self._main_repo,
)
isdir = bool(info_result) and info_result["type"] == "directory"
@@ -499,18 +493,18 @@ class RepoFileSystem(BaseFileSystem): # pylint:disable=abstract-method
meta.is_exec = bool(info_result) and is_exec(info_result["mode"])
return meta
def info(self, path_info):
fs, dvc_fs = self._get_fs_pair(path_info)
def info(self, path):
fs, dvc_fs = self._get_fs_pair(path)
try:
return fs.info(path_info)
return fs.info(path)
except FileNotFoundError:
return dvc_fs.info(path_info)
return dvc_fs.info(path)
def checksum(self, path_info):
fs, dvc_fs = self._get_fs_pair(path_info)
def checksum(self, path):
fs, dvc_fs = self._get_fs_pair(path)
try:
return fs.checksum(path_info)
return fs.checksum(path)
except FileNotFoundError:
return dvc_fs.checksum(path_info)
return dvc_fs.checksum(path)
+19 -12
View File
@@ -5,7 +5,6 @@ from collections import defaultdict
from funcy import cached_property, wrap_prop
from dvc.path_info import CloudURLInfo
from dvc.progress import DEFAULT_CALLBACK
from dvc.scheme import Schemes
@@ -17,7 +16,6 @@ _AWS_CONFIG_PATH = os.path.join(os.path.expanduser("~"), ".aws", "config")
# pylint:disable=abstract-method
class BaseS3FileSystem(ObjectFSWrapper):
scheme = Schemes.S3
PATH_CLS = CloudURLInfo
REQUIRES = {"s3fs": "s3fs", "boto3": "boto3"}
PARAM_CHECKSUM = "etag"
DETAIL_FIELDS = frozenset(("etag", "size"))
@@ -99,6 +97,11 @@ class BaseS3FileSystem(ObjectFSWrapper):
client["endpoint_url"] = config.get("endpointurl")
client["verify"] = config.get("ssl_verify")
# timeout configuration
config_kwargs = login_info["config_kwargs"]
config_kwargs["read_timeout"] = config.get("read_timeout")
config_kwargs["connect_timeout"] = config.get("connect_timeout")
# encryptions
additional = login_info["s3_additional_kwargs"]
additional["ServerSideEncryption"] = config.get("sse")
@@ -143,12 +146,6 @@ class BaseS3FileSystem(ObjectFSWrapper):
}
)
def _entry_hook(self, entry):
entry = entry.copy()
if "ETag" in entry:
entry["etag"] = entry["ETag"].strip('"')
return entry
@wrap_prop(threading.Lock())
@cached_property
def fs(self):
@@ -156,6 +153,15 @@ class BaseS3FileSystem(ObjectFSWrapper):
return _S3FileSystem(**self.fs_args)
@classmethod
def _strip_protocol(cls, path: str) -> str:
from fsspec.utils import infer_storage_options
return infer_storage_options(path)["path"]
def unstrip_protocol(self, path):
return "s3://" + path.lstrip("/")
def _translate_exceptions(func):
@functools.wraps(func)
@@ -199,9 +205,10 @@ class S3FileSystem(BaseS3FileSystem): # pylint:disable=abstract-method
verify=client_kwargs.get("verify"),
)
def _get_obj(self, path_info):
bucket = self.s3.Bucket(path_info.bucket)
return bucket.Object(path_info.path)
def _get_obj(self, path):
bucket_name, key, _ = self.fs.split_path(path)
bucket = self.s3.Bucket(bucket_name)
return bucket.Object(key)
@_translate_exceptions
def put_file(
@@ -215,7 +222,7 @@ class S3FileSystem(BaseS3FileSystem): # pylint:disable=abstract-method
ExtraArgs=self.fs_args.get("s3_additional_kwargs"),
Config=self._transfer_config,
)
self.fs.invalidate_cache(self._with_bucket(to_info.parent))
self.fs.invalidate_cache(self.path.parent(to_info))
@_translate_exceptions
def get_file(
+11 -6
View File
@@ -34,12 +34,17 @@ class SSHFileSystem(FSSpecWrapper):
DEFAULT_PORT = 22
PARAM_CHECKSUM = "md5"
def _with_bucket(self, path):
if isinstance(path, self.PATH_CLS):
path_str = path.path
else:
path_str = super()._with_bucket(path)
return os.path.normpath(path_str)
@classmethod
def _strip_protocol(cls, path: str) -> str:
from fsspec.utils import infer_storage_options
return infer_storage_options(path)["path"]
def unstrip_protocol(self, path: str) -> str:
host = self.fs_args["host"]
port = self.fs_args["port"]
path = path.lstrip("/")
return f"ssh://{host}:{port}/{path}"
def _prepare_credentials(self, **config):
self.CAN_TRAVERSE = True
+137 -25
View File
@@ -1,40 +1,99 @@
import errno
import logging
import os
from typing import TYPE_CHECKING
from typing import TYPE_CHECKING, List, Optional
from .base import RemoteActionNotImplemented
from .local import LocalFileSystem
if TYPE_CHECKING:
from dvc.types import AnyPath, DvcPath
from .base import BaseFileSystem
from .base import FileSystem
from .types import AnyPath
logger = logging.getLogger(__name__)
def transfer(
from_fs: "BaseFileSystem",
from_info: "AnyPath",
to_fs: "BaseFileSystem",
to_info: "DvcPath",
move: bool = False,
def _link(
link: "AnyPath",
from_fs: "FileSystem",
from_path: "AnyPath",
to_fs: "FileSystem",
to_path: "AnyPath",
) -> None:
use_move = isinstance(from_fs, type(to_fs)) and move
if not isinstance(from_fs, type(to_fs)):
raise OSError(errno.EXDEV, "can't link across filesystems")
try:
if use_move:
return to_fs.move(from_info, to_info)
func = getattr(to_fs, link)
func(from_path, to_path)
except (OSError, AttributeError, RemoteActionNotImplemented) as exc:
# NOTE: there are so many potential error codes that a link call can
# throw, that is safer to just catch them all and try another link.
raise OSError(
errno.ENOTSUP, f"'{link}' is not supported by {type(from_fs)}"
) from exc
if isinstance(from_fs, LocalFileSystem):
if not isinstance(from_info, from_fs.PATH_CLS):
from_info = from_fs.PATH_CLS(from_info)
return to_fs.upload(from_info, to_info)
if isinstance(to_fs, LocalFileSystem):
return from_fs.download_file(from_info, to_info)
def _copy(
from_fs: "FileSystem",
from_path: "AnyPath",
to_fs: "FileSystem",
to_path: "AnyPath",
) -> None:
if isinstance(from_fs, LocalFileSystem):
return to_fs.upload(from_path, to_path)
with from_fs.open(from_info, mode="rb") as fobj:
size = from_fs.getsize(from_info)
return to_fs.upload(fobj, to_info, total=size)
if isinstance(to_fs, LocalFileSystem):
return from_fs.download_file(from_path, to_path)
with from_fs.open(from_path, mode="rb") as fobj:
size = from_fs.getsize(from_path)
return to_fs.upload(fobj, to_path, total=size)
def _try_links(
links: List["AnyPath"],
from_fs: "FileSystem",
from_path: "AnyPath",
to_fs: "FileSystem",
to_path: "AnyPath",
) -> None:
error = None
while links:
link = links[0]
if link == "copy":
return _copy(from_fs, from_path, to_fs, to_path)
try:
return _link(link, from_fs, from_path, to_fs, to_path)
except OSError as exc:
if exc.errno not in [errno.ENOTSUP, errno.EXDEV]:
raise
error = exc
del links[0]
raise OSError(
errno.ENOTSUP, "no more link types left to try out"
) from error
def transfer(
from_fs: "FileSystem",
from_path: "AnyPath",
to_fs: "FileSystem",
to_path: "AnyPath",
hardlink: bool = False,
links: Optional[List["AnyPath"]] = None,
) -> None:
try:
assert not (hardlink and links)
if hardlink:
links = links or ["reflink", "hardlink", "copy"]
else:
links = links or ["reflink", "copy"]
_try_links(links, from_fs, from_path, to_fs, to_path)
except OSError as exc:
# If the target file already exists, we are going to simply
# ignore the exception (#4992).
@@ -48,9 +107,62 @@ def transfer(
and exc.__context__
and isinstance(exc.__context__, FileExistsError)
):
logger.debug("'%s' file already exists, skipping", to_info)
if use_move:
from_fs.remove(from_info)
logger.debug("'%s' file already exists, skipping", to_path)
return None
raise
def _test_link(
link: "AnyPath",
from_fs: "FileSystem",
from_file: "AnyPath",
to_fs: "FileSystem",
to_file: "AnyPath",
) -> bool:
try:
_try_links([link], from_fs, from_file, to_fs, to_file)
except OSError:
logger.debug("", exc_info=True)
return False
try:
_is_link_func = getattr(to_fs, f"is_{link}")
return _is_link_func(to_file)
except AttributeError:
pass
return True
def test_links(
links: List["AnyPath"],
from_fs: "FileSystem",
from_path: "AnyPath",
to_fs: "FileSystem",
to_path: "AnyPath",
) -> List["AnyPath"]:
from dvc.utils import tmp_fname
from_file = from_fs.path.join(from_path, tmp_fname())
to_file = to_fs.path.join(
to_fs.path.parent(to_path),
tmp_fname(),
)
from_fs.makedirs(from_fs.path.parent(from_file))
with from_fs.open(from_file, "wb") as fobj:
fobj.write(b"test")
ret = []
try:
for link in links:
try:
if _test_link(link, from_fs, from_file, to_fs, to_file):
ret.append(link)
finally:
to_fs.remove(to_file)
finally:
from_fs.remove(from_file)
return ret
+27 -18
View File
@@ -1,10 +1,8 @@
import logging
import threading
from functools import lru_cache
from funcy import cached_property, wrap_prop
from dvc.path_info import WebDAVURLInfo
from dvc.scheme import Schemes
from .fsspec_wrapper import FSSpecWrapper
@@ -15,7 +13,6 @@ logger = logging.getLogger(__name__)
class WebDAVFileSystem(FSSpecWrapper): # pylint:disable=abstract-method
scheme = Schemes.WEBDAV
PATH_CLS = WebDAVURLInfo
CAN_TRAVERSE = True
TRAVERSE_PREFIX_LEN = 2
REQUIRES = {"webdav4": "webdav4"}
@@ -37,14 +34,35 @@ class WebDAVFileSystem(FSSpecWrapper): # pylint:disable=abstract-method
}
)
@classmethod
def _strip_protocol(cls, path: str) -> str:
from fsspec.utils import infer_storage_options
return infer_storage_options(path)["path"].lstrip("/")
def unstrip_protocol(self, path: str) -> str:
return self.fs_args["base_url"] + "/" + path
@staticmethod
def _get_kwargs_from_urls(urlpath):
path_info = WebDAVURLInfo(urlpath)
from urllib.parse import urlparse, urlunparse
parsed = urlparse(urlpath)
scheme = parsed.scheme.replace("webdav", "http")
return {
"prefix": path_info.path.rstrip("/"),
"host": path_info.replace(path="").url,
"url": path_info.url.rstrip("/"),
"user": path_info.user,
"prefix": parsed.path.rstrip("/"),
"host": urlunparse((scheme, parsed.netloc, "", None, None, None)),
"url": urlunparse(
(
scheme,
parsed.netloc,
parsed.path.rstrip("/"),
None,
None,
None,
)
),
"user": parsed.username,
}
def _prepare_credentials(self, **config):
@@ -71,20 +89,11 @@ class WebDAVFileSystem(FSSpecWrapper): # pylint:disable=abstract-method
return WebdavFileSystem(**self.fs_args)
def upload_fobj(self, fobj, to_info, **kwargs):
rpath = self.translate_path_info(to_info)
size = kwargs.get("size")
# using upload_fileobj to directly upload fileobj rather than buffering
# and using overwrite=True to avoid check for an extra exists call,
# as caller should ensure that the file does not exist beforehand.
return self.fs.upload_fileobj(fobj, rpath, overwrite=True, size=size)
@lru_cache(512)
def translate_path_info(self, path):
if isinstance(path, self.PATH_CLS):
return path.path[len(self.prefix) :].lstrip("/")
return path
_with_bucket = translate_path_info
return self.fs.upload_fileobj(fobj, to_info, overwrite=True, size=size)
class WebDAVSFileSystem(WebDAVFileSystem): # pylint:disable=abstract-method
+28 -152
View File
@@ -1,60 +1,29 @@
import logging
import os
import posixpath
import shutil
import threading
from contextlib import contextmanager
from funcy import cached_property, wrap_prop
from dvc.hash_info import HashInfo
from dvc.path_info import CloudURLInfo
from dvc.progress import DEFAULT_CALLBACK
from dvc.scheme import Schemes
from .base import BaseFileSystem
logger = logging.getLogger(__name__)
# pylint:disable=abstract-method
from .fsspec_wrapper import CallbackMixin, FSSpecWrapper
def update_pbar(pbar, total):
"""Update pbar to accept the two arguments passed by hdfs"""
def update(_, bytes_transfered):
if bytes_transfered == -1:
pbar.update_to(total)
return
pbar.update_to(bytes_transfered)
return update
def update_callback(callback, total):
def update(_, bytes_transfered):
if bytes_transfered == -1:
return callback.absolute_update(total)
return callback.relative_update(bytes_transfered)
return update
class WebHDFSFileSystem(BaseFileSystem): # pylint:disable=abstract-method
class WebHDFSFileSystem(CallbackMixin, FSSpecWrapper):
scheme = Schemes.WEBHDFS
PATH_CLS = CloudURLInfo
REQUIRES = {"hdfs": "hdfs"}
REQUIRES = {"fsspec": "fsspec"}
PARAM_CHECKSUM = "checksum"
TRAVERSE_PREFIX_LEN = 2
def __init__(self, **config):
super().__init__(**config)
@classmethod
def _strip_protocol(cls, path: str) -> str:
from fsspec.utils import infer_storage_options
self.host = config["host"]
self.user = config.get("user")
self.port = config.get("port")
return infer_storage_options(path)["path"]
self.hdfscli_config = config.get("hdfscli_config")
self.token = config.get("webhdfs_token")
self.alias = config.get("webhdfs_alias")
def unstrip_protocol(self, path: str) -> str:
host = self.fs_args["host"]
port = self.fs_args["port"]
path = path.lstrip("/")
return f"webhdfs://{host}:{port}/{path}"
@staticmethod
def _get_kwargs_from_urls(urlpath):
@@ -66,115 +35,22 @@ class WebHDFSFileSystem(BaseFileSystem): # pylint:disable=abstract-method
)
)
def _prepare_credentials(self, **config):
self._ssl_verify = config.pop("ssl_verify", True)
principal = config.pop("kerberos_principal", None)
if principal:
config["kerb_kwargs"] = {"principal": principal}
return config
@wrap_prop(threading.Lock())
@cached_property
def hdfs_client(self):
import hdfs
def fs(self):
from fsspec.implementations.webhdfs import WebHDFS
logger.debug("HDFSConfig: %s", self.hdfscli_config)
fs = WebHDFS(**self.fs_args)
fs.session.verify = self._ssl_verify
return fs
try:
return hdfs.config.Config(self.hdfscli_config).get_client(
self.alias
)
except hdfs.util.HdfsError as exc:
exc_msg = str(exc)
errors = (
"No alias specified",
"Invalid configuration file",
f"Alias {self.alias} not found",
)
if not any(err in exc_msg for err in errors):
raise
http_url = f"http://{self.host}:{self.port}"
logger.debug("URL: %s", http_url)
if self.token is not None:
client = hdfs.TokenClient(http_url, token=self.token, root="/")
else:
client = hdfs.InsecureClient(
http_url, user=self.user, root="/"
)
return client
@contextmanager
def open(self, path_info, mode="r", encoding=None, **kwargs):
assert mode in {"r", "rt", "rb"}
with self.hdfs_client.read(
path_info.path, encoding=encoding
) as reader:
yield reader
def walk_files(self, path_info, **kwargs):
if not self.exists(path_info):
return
root = path_info.path
for path, _, fnames in self.hdfs_client.walk(root):
for fname in fnames:
yield path_info.replace(path=posixpath.join(path, fname))
def remove(self, path_info):
if path_info.scheme != self.scheme:
raise NotImplementedError
self.hdfs_client.delete(path_info.path)
def exists(self, path_info) -> bool:
assert not isinstance(path_info, list)
assert path_info.scheme == "webhdfs"
status = self.hdfs_client.status(path_info.path, strict=False)
return status is not None
def info(self, path_info):
st = self.hdfs_client.status(path_info.path)
return {"size": st["length"], "type": "file"}
def checksum(self, path_info):
return HashInfo(
"checksum",
self.hdfs_client.checksum(path_info.path)["bytes"],
size=self.hdfs_client.status(path_info.path)["length"],
)
def copy(self, from_info, to_info, **_kwargs):
with self.hdfs_client.read(from_info.path) as reader:
with self.hdfs_client.write(to_info.path) as writer:
shutil.copyfileobj(reader, writer)
def move(self, from_info, to_info):
self.hdfs_client.makedirs(to_info.parent.path)
self.hdfs_client.rename(from_info.path, to_info.path)
def upload_fobj(self, fobj, to_info, **kwargs):
with self.hdfs_client.write(to_info.path) as fdest:
shutil.copyfileobj(fobj, fdest)
def put_file(
self, from_file, to_info, callback=DEFAULT_CALLBACK, **kwargs
):
total = os.path.getsize(from_file)
callback.set_size(total)
self.hdfs_client.makedirs(to_info.parent.path)
return self.hdfs_client.upload(
to_info.path,
from_file,
overwrite=True,
progress=update_callback(callback, total),
)
def get_file(
self, from_info, to_file, callback=DEFAULT_CALLBACK, **kwargs
):
total = self.getsize(from_info)
if total:
callback.set_size(total)
self.hdfs_client.download(
from_info.path, to_file, progress=update_callback(callback, total)
)
def checksum(self, path):
ukey = self.fs.ukey(path)
return ukey["bytes"]
+3 -16
View File
@@ -7,13 +7,8 @@ HASH_DIR_SUFFIX = ".dir"
@dataclass
class HashInfo:
PARAM_SIZE = "size"
PARAM_NFILES = "nfiles"
name: Optional[str]
value: Optional[str]
size: Optional[int] = field(default=None, compare=False)
nfiles: Optional[int] = field(default=None, compare=False)
obj_name: Optional[str] = field(default=None, compare=False)
def __bool__(self):
@@ -27,15 +22,11 @@ class HashInfo:
@classmethod
def from_dict(cls, d):
_d = d.copy() if d else {}
size = _d.pop(cls.PARAM_SIZE, None)
nfiles = _d.pop(cls.PARAM_NFILES, None)
if not _d:
if not d:
return cls(None, None)
((name, value),) = _d.items()
return cls(name, value, size=size, nfiles=nfiles)
((name, value),) = d.items()
return cls(name, value)
def to_dict(self):
ret = OrderedDict()
@@ -43,10 +34,6 @@ class HashInfo:
return ret
ret[self.name] = self.value
if self.size is not None:
ret[self.PARAM_SIZE] = self.size
if self.nfiles is not None:
ret[self.PARAM_NFILES] = self.nfiles
return ret
@property
+13 -16
View File
@@ -7,11 +7,10 @@ from itertools import groupby, takewhile
from pathspec.patterns import GitWildMatchPattern
from pathspec.util import normalize_file
from dvc.fs.base import BaseFileSystem
from dvc.path_info import PathInfo
from dvc.fs.base import FileSystem
from dvc.fs.local import localfs
from dvc.pathspec_math import PatternInfo, merge_patterns
from dvc.scheme import Schemes
from dvc.system import System
from dvc.types import AnyPath, List, Optional
from dvc.utils import relpath
from dvc.utils.collections import PathStringTrie
@@ -84,7 +83,7 @@ class DvcIgnorePatterns(DvcIgnore):
else:
return False
if not System.is_unix():
if os.name == "nt":
path = normalize_file(path)
return path
@@ -268,25 +267,25 @@ class DvcIgnoreFilter:
dirs, files = ignore_pattern(abs_root, dirs, files)
return dirs, files
def walk(self, fs: BaseFileSystem, path_info: AnyPath, **kwargs):
def walk(self, fs: FileSystem, path: AnyPath, **kwargs):
ignore_subrepos = kwargs.pop("ignore_subrepos", True)
if fs.scheme == Schemes.LOCAL:
for root, dirs, files in fs.walk(path_info, **kwargs):
for root, dirs, files in fs.walk(path, **kwargs):
dirs[:], files[:] = self(
root, dirs, files, ignore_subrepos=ignore_subrepos
)
yield root, dirs, files
else:
yield from fs.walk(path_info, **kwargs)
yield from fs.walk(path, **kwargs)
def walk_files(self, fs: BaseFileSystem, path_info: AnyPath, **kwargs):
def find(self, fs: FileSystem, path: AnyPath, **kwargs):
if fs.scheme == Schemes.LOCAL:
for root, _, files in self.walk(fs, path_info, **kwargs):
for root, _, files in self.walk(fs, path, **kwargs):
for file in files:
# NOTE: os.path.join is ~5.5 times slower
yield PathInfo(f"{root}{os.sep}{file}")
yield f"{root}{os.sep}{file}"
else:
yield from fs.walk_files(path_info)
yield from fs.find(path)
def _get_trie_pattern(
self, dirname, dnames: Optional["List"] = None, ignore_subrepos=True
@@ -308,7 +307,7 @@ class DvcIgnoreFilter:
dirs = list(
takewhile(
lambda path: path != prefix,
(parent.fspath for parent in PathInfo(dirname).parents),
(parent for parent in localfs.path.parents(dirname)),
)
)
dirs.reverse()
@@ -344,8 +343,6 @@ class DvcIgnoreFilter:
return self._is_ignored(path, False)
def _outside_repo(self, path):
path = PathInfo(path)
# paths outside of the repo should be ignored
path = relpath(path, self.root_dir)
if path.startswith("..") or (
@@ -374,7 +371,7 @@ class DvcIgnoreFilter:
return _no_match(target)
def is_ignored(
self, fs: BaseFileSystem, path: str, ignore_subrepos: bool = True
self, fs: FileSystem, path: str, ignore_subrepos: bool = True
) -> bool:
# NOTE: can't use self.check_ignore(path).match for now, see
# https://github.com/iterative/dvc/issues/4555
@@ -394,7 +391,7 @@ def init(path):
if os.path.exists(dvcignore):
return dvcignore
with open(dvcignore, "w") as fobj:
with open(dvcignore, "w", encoding="utf-8") as fobj:
fobj.write(
"# Add patterns of files dvc should ignore, which could improve\n"
"# the performance. Learn more at\n"
+25 -43
View File
@@ -2,23 +2,17 @@ import itertools
import os
import pathlib
import platform
import uuid
import psutil
from dvc.exceptions import DvcException, NotDvcRepoError
from dvc import __version__
from dvc.exceptions import NotDvcRepoError
from dvc.fs import FS_MAP, get_fs_cls, get_fs_config
from dvc.fs.utils import test_links
from dvc.repo import Repo
from dvc.scm.base import SCMError
from dvc.system import System
from dvc.scm import SCMError
from dvc.utils import error_link
from dvc.utils.pkg import PKG
from dvc.version import __version__
if PKG is None:
package = ""
else:
package = f"({PKG})"
try:
import importlib.metadata as importlib_metadata
@@ -26,6 +20,9 @@ except ImportError: # < 3.8
import importlib_metadata # type: ignore[no-redef]
package = "" if PKG is None else f"({PKG})"
def get_dvc_info():
info = [
f"DVC version: {__version__} {package}",
@@ -76,7 +73,7 @@ def _get_caches(cache):
def _get_remotes(config):
schemes = (
get_fs_cls(get_fs_config(config, name=remote)).scheme
get_fs_cls(get_fs_config(None, config, name=remote)).scheme
for remote in config["remote"]
)
@@ -84,35 +81,17 @@ def _get_remotes(config):
def _get_linktype_support_info(repo):
odb = repo.odb.local
links = {
"reflink": (System.reflink, None),
"hardlink": (System.hardlink, System.is_hardlink),
"symlink": (System.symlink, System.is_symlink),
}
links = test_links(
["reflink", "hardlink", "symlink"],
odb.fs,
odb.fs_path,
repo.fs,
repo.root_dir,
)
fname = "." + str(uuid.uuid4())
src = os.path.join(repo.odb.local.cache_dir, fname)
open(src, "w").close()
dst = os.path.join(repo.root_dir, fname)
cache = []
for name, (link, is_link) in links.items():
try:
link(src, dst)
status = "supported"
if is_link and not is_link(dst):
status = "broken"
os.unlink(dst)
except DvcException:
status = "not supported"
if status == "supported":
cache.append(name)
os.remove(src)
return ", ".join(cache)
return ", ".join(links)
def _get_supported_remotes():
@@ -136,11 +115,14 @@ def _get_supported_remotes():
def get_fs_type(path):
partition = {
pathlib.Path(part.mountpoint): (part.fstype + " on " + part.device)
for part in psutil.disk_partitions(all=True)
}
partition = {}
for part in psutil.disk_partitions(all=True):
if part.fstype != "":
try:
mountpoint = pathlib.Path(part.mountpoint).resolve()
partition[mountpoint] = part.fstype + " on " + part.device
except PermissionError:
pass
# need to follow the symlink: https://github.com/iterative/dvc/issues/5065
path = pathlib.Path(path).resolve()
+2 -13
View File
@@ -176,25 +176,14 @@ class HardlinkLock(flufl.lock.Lock, LockBase):
except flufl.lock.TimeOutError:
raise LockError(FAILED_TO_LOCK_MESSAGE)
def _set_claimfile(self, pid=None):
super()._set_claimfile(pid)
def _set_claimfile(self):
super()._set_claimfile()
if self._tmp_dir is not None:
# Under Windows file path length is limited so we hash it
filename = hashlib.md5(self._claimfile.encode()).hexdigest()
self._claimfile = os.path.join(self._tmp_dir, filename + ".lock")
# Fix for __del__ bug in flufl.lock [1] which is causing errors on
# Python shutdown [2].
# [1] https://gitlab.com/warsaw/flufl.lock/issues/7
# [2] https://github.com/iterative/dvc/issues/2573
def __del__(self):
try:
if self._owned:
self.finalize()
except ImportError:
pass
def make_lock(lockfile, tmp_dir=None, friendly=False, hardlink_lock=False):
cls = HardlinkLock if hardlink_lock else Lock
+13
View File
@@ -142,9 +142,22 @@ class LoggerHandler(logging.StreamHandler):
super().handleError(record)
raise LoggingException(record)
def emit_pretty_exception(self, exc, verbose: bool = False):
return exc.__pretty_exc__(verbose=verbose)
def emit(self, record):
"""Write to Tqdm's stream so as to not break progress-bars"""
try:
if record.exc_info:
_, exc, *_ = record.exc_info
if hasattr(exc, "__pretty_exc__"):
try:
self.emit_pretty_exception(exc, verbose=_is_verbose())
if not _is_verbose():
return
except Exception: # noqa, pylint: disable=broad-except
pass
msg = self.format(record)
Tqdm.write(
msg, file=self.stream, end=getattr(self, "terminator", "\n")
+16 -1
View File
@@ -2,8 +2,10 @@ import logging
import os
from typing import (
TYPE_CHECKING,
Any,
Dict,
Iterable,
Iterator,
Mapping,
Optional,
Tuple,
@@ -181,7 +183,7 @@ class MachineManager:
"""Create and start the specified machine instance."""
config, backend = self.get_config_and_backend(name)
if "startup_script" in config:
with open(config["startup_script"]) as fobj:
with open(config["startup_script"], encoding="utf-8") as fobj:
startup_script = fobj.read()
else:
startup_script = DEFAULT_STARTUP_SCRIPT
@@ -200,3 +202,16 @@ class MachineManager:
def run_shell(self, name: Optional[str]):
config, backend = self.get_config_and_backend(name)
return backend.run_shell(**config)
def status(self, name: str) -> Iterator[Dict[Any, Any]]:
config, backend = self.get_config_and_backend(name)
return backend.instances(**config)
def rename(self, name: str, new: str):
"""move configuration to a new location if the machine is running."""
config, backend = self.get_config_and_backend(name)
return backend.rename(new=new, **config)
def get_executor_kwargs(self, name: Optional[str]):
config, backend = self.get_config_and_backend(name)
return backend.get_executor_kwargs(**config)
+7 -6
View File
@@ -4,13 +4,12 @@ from typing import TYPE_CHECKING, Iterator, Optional
if TYPE_CHECKING:
from dvc.fs.ssh import SSHFileSystem
from dvc.repo.experiments.executor.base import BaseExecutor
from dvc.types import StrPath
class BaseMachineBackend(ABC):
def __init__(self, tmp_dir: "StrPath", **kwargs):
raise NotImplementedError
self.tmp_dir = tmp_dir
@abstractmethod
def create(self, name: Optional[str] = None, **config):
@@ -34,10 +33,8 @@ class BaseMachineBackend(ABC):
"""Spawn an interactive SSH shell for the specified machine."""
@abstractmethod
def get_executor(
self, name: Optional[str] = None, **config
) -> "BaseExecutor":
"""Return an executor instance which can be used for DVC
def get_executor_kwargs(self, name: str, **config) -> dict:
"""Return SSHExecutor kwargs which can be used for DVC
experiment/pipeline execution on the specified machine.
"""
@@ -48,3 +45,7 @@ class BaseMachineBackend(ABC):
) -> Iterator["SSHFileSystem"]:
"""Return an sshfs instance for the default directory on the
specified machine."""
@abstractmethod
def rename(self, name: str, new: str, **config):
"""Rename a machine instance."""
+85 -17
View File
@@ -1,35 +1,103 @@
import os
from contextlib import contextmanager
from functools import partial, partialmethod
from typing import TYPE_CHECKING, Iterator, Optional
from tpi import TerraformProviderIterative, terraform
from dvc.exceptions import DvcException
from dvc.fs.ssh import SSHFileSystem
from dvc.utils.fs import makedirs
from .base import BaseMachineBackend
if TYPE_CHECKING:
from dvc.repo.experiments.executor.base import BaseExecutor
from dvc.types import StrPath
class TerraformBackend(terraform.TerraformBackend, BaseMachineBackend):
def __init__(self, tmp_dir: "StrPath", **kwargs):
super().__init__(tmp_dir)
@contextmanager
def _sshfs(resource: dict):
from tpi import TerraformProviderIterative
def get_executor(
self, name: Optional[str] = None, **config
) -> "BaseExecutor":
raise NotImplementedError
with TerraformProviderIterative.pemfile(resource) as pem:
fs = SSHFileSystem(
host=resource["instance_ip"],
user="ubuntu",
keyfile=pem,
)
yield fs
class TerraformBackend(BaseMachineBackend):
def __init__(self, tmp_dir: "StrPath", **kwargs):
super().__init__(tmp_dir, **kwargs)
makedirs(tmp_dir, exist_ok=True)
@contextmanager
def make_tpi(self, name: str):
from tpi import TPIError
from tpi.terraform import TerraformBackend as TPIBackend
try:
working_dir = os.path.join(self.tmp_dir, name)
makedirs(working_dir, exist_ok=True)
yield TPIBackend(working_dir=working_dir)
except TPIError as exc:
raise DvcException("TPI operation failed") from exc
def _tpi_func(self, fname, name: Optional[str] = None, **config):
from tpi import TPIError
assert name
with self.make_tpi(name) as tpi:
func = getattr(tpi, fname)
try:
return func(name=name, **config)
except TPIError as exc:
raise DvcException(f"TPI {fname} failed") from exc
create = partialmethod(_tpi_func, "create") # type: ignore[assignment]
destroy = partialmethod(_tpi_func, "destroy") # type: ignore[assignment]
instances = partialmethod(
_tpi_func, "instances"
) # type: ignore[assignment]
run_shell = partialmethod(
_tpi_func, "run_shell"
) # type: ignore[assignment]
def get_executor_kwargs(self, name: str, **config) -> dict:
with self.make_tpi(name) as tpi:
resource = tpi.default_resource(name)
return {
"host": resource["instance_ip"],
"port": SSHFileSystem.DEFAULT_PORT,
"username": "ubuntu",
"fs_factory": partial(_sshfs, dict(resource)),
}
@contextmanager
def get_sshfs( # pylint: disable=unused-argument
self, name: Optional[str] = None, **config
) -> Iterator["SSHFileSystem"]:
resource = self._default_resource(name)
with TerraformProviderIterative.pemfile(resource) as pem:
fs = SSHFileSystem(
host=resource["instance_ip"],
user="ubuntu",
keyfile=pem,
)
assert name
with self.make_tpi(name) as tpi:
resource = tpi.default_resource(name)
with _sshfs(resource) as fs:
yield fs
def rename(self, name: str, new: str, **config):
"""rename a dvc machine instance to a new name"""
import shutil
mtype = "iterative_machine"
new_dir = os.path.join(self.tmp_dir, new)
old_dir = os.path.join(self.tmp_dir, name)
if os.path.exists(new_dir):
raise DvcException(f"rename failed: path {new_dir} already exists")
if not os.path.exists(old_dir):
return
with self.make_tpi(name) as tpi:
tpi.state_mv(f"{mtype}.{name}", f"{mtype}.{new}", **config)
shutil.move(old_dir, new_dir)
+2 -2
View File
@@ -14,8 +14,8 @@ logger = logging.getLogger(__name__)
def check(odb: "ObjectDB", obj: "HashFile", **kwargs):
if isinstance(obj, Tree):
for _, entry in obj:
odb.check(entry.hash_info, **kwargs)
for _, _, oid in obj:
odb.check(oid, **kwargs)
odb.check(obj.hash_info, **kwargs)
+266
View File
@@ -0,0 +1,266 @@
import logging
from itertools import chain
from dvc import prompt
from dvc.exceptions import CacheLinkError, CheckoutError, ConfirmRemoveError
from dvc.fs.utils import test_links, transfer
from dvc.ignore import DvcIgnoreFilter
from dvc.objects.db.slow_link_detection import ( # type: ignore[attr-defined]
slow_link_guard,
)
from dvc.objects.diff import ROOT
from dvc.objects.diff import diff as odiff
from dvc.objects.stage import stage
from dvc.types import Optional
logger = logging.getLogger(__name__)
def _remove(fs_path, fs, in_cache, force=False):
if not fs.exists(fs_path):
return
if force:
fs.remove(fs_path)
return
if not in_cache:
msg = (
f"file/directory '{fs_path}' is going to be removed. "
"Are you sure you want to proceed?"
)
if not prompt.confirm(msg):
raise ConfirmRemoveError(fs_path)
fs.remove(fs_path)
def _relink(link, cache, cache_info, fs, path, in_cache, force):
_remove(path, fs, in_cache, force=force)
link(cache, cache_info, fs, path)
# NOTE: Depending on a file system (e.g. on NTFS), `_remove` might reset
# read-only permissions in order to delete a hardlink to protected object,
# which will also reset it for the object itself, making it unprotected,
# so we need to protect it back.
cache.protect(cache_info)
def _checkout_file(
link,
fs_path,
fs,
change,
cache,
force,
progress_callback=None,
relink=False,
state=None,
):
"""The file is changed we need to checkout a new copy"""
modified = False
cache_fs_path = cache.hash_to_path(change.new.oid.value)
if change.old.oid:
if relink:
if fs.iscopy(fs_path) and cache.cache_types[0] == "copy":
cache.unprotect(fs_path)
else:
_relink(
link,
cache,
cache_fs_path,
fs,
fs_path,
change.old.in_cache,
force=force,
)
else:
modified = True
_relink(
link,
cache,
cache_fs_path,
fs,
fs_path,
change.old.in_cache,
force=force,
)
else:
link(cache, cache_fs_path, fs, fs_path)
modified = True
if state:
state.save(fs_path, fs, change.new.oid)
if progress_callback:
progress_callback(fs_path)
return modified
def _diff(
fs_path,
fs,
obj,
cache,
relink=False,
dvcignore: Optional[DvcIgnoreFilter] = None,
):
old = None
try:
_, _, old = stage(
cache,
fs_path,
fs,
obj.hash_info.name if obj else cache.fs.PARAM_CHECKSUM,
dry_run=True,
dvcignore=dvcignore,
)
except FileNotFoundError:
pass
diff = odiff(old, obj, cache)
if relink:
diff.modified.extend(diff.unchanged)
return diff
class Link:
def __init__(self, links):
self._links = links
@slow_link_guard
def __call__(self, cache, from_path, to_fs, to_path):
if to_fs.exists(to_path):
to_fs.remove(to_path) # broken symlink
cache.makedirs(cache.fs.path.parent(to_path))
try:
transfer(cache.fs, from_path, to_fs, to_path, links=self._links)
except FileNotFoundError as exc:
raise CheckoutError([to_path]) from exc
except OSError as exc:
raise CacheLinkError([to_path]) from exc
def _checkout(
diff,
fs_path,
fs,
cache,
force=False,
progress_callback=None,
relink=False,
state=None,
):
if not diff:
return
links = test_links(cache.cache_types, cache.fs, cache.fs_path, fs, fs_path)
if not links:
raise CacheLinkError([fs_path])
link = Link(links)
for change in diff.deleted:
entry_path = (
fs.path.join(fs_path, *change.old.key)
if change.old.key != ROOT
else fs_path
)
_remove(entry_path, fs, change.old.in_cache, force=force)
failed = []
for change in chain(diff.added, diff.modified):
entry_path = (
fs.path.join(fs_path, *change.new.key)
if change.new.key != ROOT
else fs_path
)
if change.new.oid.isdir:
fs.makedirs(entry_path)
continue
try:
_checkout_file(
link,
entry_path,
fs,
change,
cache,
force,
progress_callback,
relink,
state=state,
)
except CheckoutError as exc:
failed.extend(exc.target_infos)
if failed:
raise CheckoutError(failed)
def checkout(
fs_path,
fs,
obj,
cache,
force=False,
progress_callback=None,
relink=False,
quiet=False,
dvcignore: Optional[DvcIgnoreFilter] = None,
state=None,
):
# if scheme(fs_path) not in ["local", cache.fs.scheme]:
# raise NotImplementedError
diff = _diff(
fs_path,
fs,
obj,
cache,
relink=relink,
dvcignore=dvcignore,
)
failed = []
if not obj:
if not quiet:
logger.warning(
"No file hash info found for '%s'. It won't be created.",
fs_path,
)
failed.append(fs_path)
elif not diff:
logger.trace("Data '%s' didn't change.", fs_path) # type: ignore
try:
_checkout(
diff,
fs_path,
fs,
cache,
force=force,
progress_callback=progress_callback,
relink=relink,
state=state,
)
except CheckoutError as exc:
failed.extend(exc.target_infos)
if diff and state:
state.save_link(fs_path, fs)
if not failed:
state.save(fs_path, fs, obj.hash_info)
if failed or not diff:
if progress_callback and obj:
progress_callback(fs_path, len(obj))
if failed:
raise CheckoutError(failed)
return
return bool(diff) and not relink
+10 -8
View File
@@ -6,22 +6,22 @@ if TYPE_CHECKING:
from .index import ObjectDBIndexBase
def get_odb(fs, path_info, **config):
def get_odb(fs, fs_path, **config):
from .base import ObjectDB
from .gdrive import GDriveObjectDB
from .local import LocalObjectDB
from .oss import OSSObjectDB
if fs.scheme == Schemes.LOCAL:
return LocalObjectDB(fs, path_info, **config)
return LocalObjectDB(fs, fs_path, **config)
if fs.scheme == Schemes.GDRIVE:
return GDriveObjectDB(fs, path_info, **config)
return GDriveObjectDB(fs, fs_path, **config)
if fs.scheme == Schemes.OSS:
return OSSObjectDB(fs, path_info, **config)
return OSSObjectDB(fs, fs_path, **config)
return ObjectDB(fs, path_info, **config)
return ObjectDB(fs, fs_path, **config)
def _get_odb(repo, settings):
@@ -30,9 +30,9 @@ def _get_odb(repo, settings):
if not settings:
return None
cls, config, path_info = get_cloud_fs(repo, **settings)
cls, config, fs_path = get_cloud_fs(repo, **settings)
config["tmp_dir"] = repo.tmp_dir
return get_odb(cls(**config), path_info, state=repo.state, **config)
return get_odb(cls(**config), fs_path, state=repo.state, **config)
def get_index(odb) -> "ObjectDBIndexBase":
@@ -43,7 +43,9 @@ def get_index(odb) -> "ObjectDBIndexBase":
cls = ObjectDBIndex if odb.tmp_dir else ObjectDBIndexNoop
return cls(
odb.tmp_dir,
hashlib.sha256(odb.path_info.url.encode("utf-8")).hexdigest(),
hashlib.sha256(
odb.fs.unstrip_protocol(odb.fs_path).encode("utf-8")
).hexdigest(),
odb.fs.CHECKSUM_DIR_SUFFIX,
)
+64 -63
View File
@@ -10,9 +10,9 @@ from dvc.objects.file import HashFile
from dvc.progress import Tqdm
if TYPE_CHECKING:
from dvc.fs.base import BaseFileSystem
from dvc.fs.base import FileSystem
from dvc.hash_info import HashInfo
from dvc.types import AnyPath, DvcPath
from dvc.types import AnyPath
logger = logging.getLogger(__name__)
@@ -23,15 +23,14 @@ class ObjectDB:
DEFAULT_CACHE_TYPES = ["copy"]
CACHE_MODE: Optional[int] = None
def __init__(self, fs: "BaseFileSystem", path_info: "AnyPath", **config):
def __init__(self, fs: "FileSystem", path: str, **config):
from dvc.state import StateNoop
self.fs = fs
self.path_info = path_info
self.fs_path = path
self.state = config.get("state", StateNoop())
self.verify = config.get("verify", self.DEFAULT_VERIFY)
self.cache_types = config.get("type") or copy(self.DEFAULT_CACHE_TYPES)
self.cache_type_confirmed = False
self.slow_link_warning = config.get("slow_link_warning", True)
self.tmp_dir = config.get("tmp_dir")
self.read_only = config.get("read_only", False)
@@ -50,26 +49,25 @@ class ObjectDB:
def __eq__(self, other):
return (
self.fs == other.fs
and self.path_info == other.path_info
and self.fs_path == other.fs_path
and self.read_only == other.read_only
)
def __hash__(self):
return hash((self.fs.scheme, self.path_info))
return hash((self.fs.scheme, self.fs_path))
def exists(self, hash_info: "HashInfo"):
return self.fs.exists(self.hash_to_path_info(hash_info.value))
return self.fs.exists(self.hash_to_path(hash_info.value))
def move(self, from_info, to_info):
self.fs.move(from_info, to_info)
def makedirs(self, path_info):
self.fs.makedirs(path_info)
def makedirs(self, fs_path):
self.fs.makedirs(fs_path)
def get(self, hash_info: "HashInfo"):
"""get raw object"""
return HashFile(
# Prefer string path over PathInfo when possible due to performance
self.hash_to_path(hash_info.value),
self.fs,
hash_info,
@@ -77,25 +75,29 @@ class ObjectDB:
def _add_file(
self,
from_fs: "BaseFileSystem",
from_fs: "FileSystem",
from_info: "AnyPath",
to_info: "DvcPath",
to_info: "AnyPath",
_hash_info: "HashInfo",
move: bool = False,
hardlink: bool = False,
):
from dvc import fs
self.makedirs(to_info.parent)
self.makedirs(self.fs.path.parent(to_info))
return fs.utils.transfer(
from_fs, from_info, self.fs, to_info, move=move
from_fs,
from_info,
self.fs,
to_info,
hardlink=hardlink,
)
def add(
self,
path_info: "AnyPath",
fs: "BaseFileSystem",
fs_path: "AnyPath",
fs: "FileSystem",
hash_info: "HashInfo",
move: bool = True,
hardlink: bool = False,
verify: Optional[bool] = None,
):
if self.read_only:
@@ -109,35 +111,32 @@ class ObjectDB:
except (ObjectFormatError, FileNotFoundError):
pass
cache_info = self.hash_to_path_info(hash_info.value)
self._add_file(fs, path_info, cache_info, hash_info, move=move)
cache_fs_path = self.hash_to_path(hash_info.value)
self._add_file(
fs, fs_path, cache_fs_path, hash_info, hardlink=hardlink
)
try:
if verify:
self.check(hash_info, check_hash=True)
self.protect(cache_info)
self.state.save(cache_info, self.fs, hash_info)
self.protect(cache_fs_path)
self.state.save(cache_fs_path, self.fs, hash_info)
except (ObjectFormatError, FileNotFoundError):
pass
def hash_to_path_info(self, hash_) -> "DvcPath":
return self.path_info / hash_[0:2] / hash_[2:]
# Override to return path as a string instead of PathInfo for clouds
# which support string paths (see local)
def hash_to_path(self, hash_):
return self.hash_to_path_info(hash_)
return self.fs.path.join(self.fs_path, hash_[0:2], hash_[2:])
def protect(self, path_info): # pylint: disable=unused-argument
def protect(self, fs_path): # pylint: disable=unused-argument
pass
def is_protected(self, path_info): # pylint: disable=unused-argument
def is_protected(self, fs_path): # pylint: disable=unused-argument
return False
def unprotect(self, path_info): # pylint: disable=unused-argument
def unprotect(self, fs_path): # pylint: disable=unused-argument
pass
def set_exec(self, path_info): # pylint: disable=unused-argument
def set_exec(self, fs_path): # pylint: disable=unused-argument
pass
def check(
@@ -160,52 +159,54 @@ class ObjectDB:
"""
obj = self.get(hash_info)
if self.is_protected(obj.path_info):
if self.is_protected(obj.fs_path):
logger.trace( # type: ignore[attr-defined]
"Assuming '%s' is unchanged since it is read-only",
obj.path_info,
obj.fs_path,
)
return
try:
obj.check(self, check_hash=check_hash)
except ObjectFormatError:
logger.warning("corrupted cache file '%s'.", obj.path_info)
logger.warning("corrupted cache file '%s'.", obj.fs_path)
with suppress(FileNotFoundError):
self.fs.remove(obj.path_info)
self.fs.remove(obj.fs_path)
raise
if check_hash:
# making cache file read-only so we don't need to check it
# next time
self.protect(obj.path_info)
self.protect(obj.fs_path)
def _list_paths(self, prefix=None, progress_callback=None):
if prefix:
if len(prefix) > 2:
path_info = self.path_info / prefix[:2] / prefix[2:]
fs_path = self.fs.path.join(
self.fs_path, prefix[:2], prefix[2:]
)
else:
path_info = self.path_info / prefix[:2]
fs_path = self.fs.path.join(self.fs_path, prefix[:2])
prefix = True
else:
path_info = self.path_info
fs_path = self.fs_path
prefix = False
if progress_callback:
for file_info in self.fs.walk_files(path_info, prefix=prefix):
for file_info in self.fs.find(fs_path, prefix=prefix):
progress_callback()
yield file_info.path
yield file_info
else:
yield from self.fs.walk_files(path_info, prefix=prefix)
yield from self.fs.find(fs_path, prefix=prefix)
def _path_to_hash(self, path):
parts = self.fs.PATH_CLS(path).parts[-2:]
parts = self.fs.path.parts(path)[-2:]
if not (len(parts) == 2 and parts[0] and len(parts[0]) == 2):
raise ValueError(f"Bad cache file path '{path}'")
return "".join(parts)
def list_hashes(self, prefix=None, progress_callback=None):
def _list_hashes(self, prefix=None, progress_callback=None):
"""Iterate over hashes in this fs.
If `prefix` is specified, only hashes which begin with `prefix`
@@ -221,12 +222,12 @@ class ObjectDB:
def _hashes_with_limit(self, limit, prefix=None, progress_callback=None):
count = 0
for hash_ in self.list_hashes(prefix, progress_callback):
for hash_ in self._list_hashes(prefix, progress_callback):
yield hash_
count += 1
if count > limit:
logger.debug(
"`list_hashes()` returned max '{}' hashes, "
"`_list_hashes()` returned max '{}' hashes, "
"skipping remaining results".format(limit)
)
return
@@ -265,7 +266,7 @@ class ObjectDB:
max_hashes / total_prefixes, prefix, update
)
else:
hashes = self.list_hashes(prefix, update)
hashes = self._list_hashes(prefix, update)
remote_hashes = set(hashes)
if remote_hashes:
@@ -275,7 +276,7 @@ class ObjectDB:
logger.debug(f"Estimated remote size: {remote_size} files")
return remote_size, remote_hashes
def list_hashes_traverse(
def _list_hashes_traverse(
self, remote_size, remote_hashes, jobs=None, name=None
):
"""Iterate over all hashes found in this fs.
@@ -321,7 +322,7 @@ class ObjectDB:
def list_with_update(prefix):
return list(
self.list_hashes(
self._list_hashes(
prefix=prefix, progress_callback=pbar.update
)
)
@@ -345,10 +346,10 @@ class ObjectDB:
)
if not self.fs.CAN_TRAVERSE:
return self.list_hashes()
return self._list_hashes()
remote_size, remote_hashes = self._estimate_remote_size(name=name)
return self.list_hashes_traverse(
return self._list_hashes_traverse(
remote_size, remote_hashes, jobs, name
)
@@ -374,18 +375,18 @@ class ObjectDB:
removed = False
# hashes must be sorted to ensure we always remove .dir files first
for hash_ in sorted(
self.all(jobs, str(self.path_info)),
self.all(jobs, self.fs_path),
key=self.fs.is_dir_hash,
reverse=True,
):
if hash_ in used_hashes:
continue
path_info = self.hash_to_path_info(hash_)
fs_path = self.hash_to_path(hash_)
if self.fs.is_dir_hash(hash_):
# backward compatibility
# pylint: disable=protected-access
self._remove_unpacked_dir(hash_)
self.fs.remove(path_info)
self.fs.remove(fs_path)
removed = True
return removed
@@ -402,16 +403,16 @@ class ObjectDB:
unit="file",
) as pbar:
def exists_with_progress(path_info):
ret = self.fs.exists(path_info)
pbar.update_msg(str(path_info))
def exists_with_progress(fs_path):
ret = self.fs.exists(fs_path)
pbar.update_msg(fs_path)
return ret
with ThreadPoolExecutor(
max_workers=jobs or self.fs.jobs
) as executor:
path_infos = map(self.hash_to_path_info, hashes)
in_remote = executor.map(exists_with_progress, path_infos)
fs_paths = map(self.hash_to_path, hashes)
in_remote = executor.map(exists_with_progress, fs_paths)
ret = list(itertools.compress(hashes, in_remote))
return ret
@@ -454,7 +455,7 @@ class ObjectDB:
# During the tests, for ensuring that the traverse behavior
# is working we turn on this option. It will ensure the
# list_hashes_traverse() is called.
# _list_hashes_traverse() is called.
always_traverse = getattr(self.fs, "_ALWAYS_TRAVERSE", False)
hashes = set(hashes)
@@ -491,6 +492,6 @@ class ObjectDB:
logger.debug(f"Querying '{len(hashes)}' hashes via traverse")
remote_hashes = set(
self.list_hashes_traverse(remote_size, remote_hashes, jobs, name)
self._list_hashes_traverse(remote_size, remote_hashes, jobs, name)
)
return list(hashes & set(remote_hashes))
+36 -33
View File
@@ -7,7 +7,6 @@ from shortuuid import uuid
from dvc.hash_info import HashInfo
from dvc.objects.errors import ObjectFormatError
from dvc.path_info import PathInfo
from dvc.progress import Tqdm
from dvc.utils import relpath
from dvc.utils.fs import copyfile, remove, umask, walk_files
@@ -22,9 +21,9 @@ class LocalObjectDB(ObjectDB):
CACHE_MODE = 0o444
UNPACKED_DIR_SUFFIX = ".unpacked"
def __init__(self, fs, path_info, **config):
super().__init__(fs, path_info, **config)
self.cache_dir = path_info.fspath
def __init__(self, fs, fs_path, **config):
super().__init__(fs, fs_path, **config)
self.cache_dir = fs_path
shared = config.get("shared")
if shared:
@@ -36,11 +35,11 @@ class LocalObjectDB(ObjectDB):
@property
def cache_dir(self):
return self.path_info.fspath if self.path_info else None
return self.fs_path if self.fs_path else None
@cache_dir.setter
def cache_dir(self, value):
self.path_info = PathInfo(value) if value else None
self.fs_path = value
@cached_property
def cache_path(self):
@@ -50,10 +49,10 @@ class LocalObjectDB(ObjectDB):
super().move(from_info, to_info)
os.chmod(to_info, self._file_mode)
def makedirs(self, path_info):
def makedirs(self, fs_path):
from dvc.utils.fs import makedirs
makedirs(path_info, exist_ok=True, mode=self._dir_mode)
makedirs(fs_path, exist_ok=True, mode=self._dir_mode)
def hash_to_path(self, hash_):
# NOTE: `self.cache_path` is already normalized so we can simply use
@@ -81,26 +80,30 @@ class LocalObjectDB(ObjectDB):
return ret
def _list_paths(self, prefix=None, progress_callback=None):
assert self.path_info is not None
assert self.fs_path is not None
if prefix:
path_info = self.path_info / prefix[:2]
if not self.fs.exists(path_info):
fs_path = self.fs.path.join(self.fs_path, prefix[:2])
if not self.fs.exists(fs_path):
return
else:
path_info = self.path_info
fs_path = self.fs_path
# NOTE: use utils.fs walk_files since fs.walk_files will not follow
# symlinks
if progress_callback:
for path in walk_files(path_info):
for path in walk_files(fs_path):
progress_callback()
yield path
else:
yield from walk_files(path_info)
yield from walk_files(fs_path)
def _remove_unpacked_dir(self, hash_):
info = self.hash_to_path_info(hash_)
path_info = info.with_name(info.name + self.UNPACKED_DIR_SUFFIX)
self.fs.remove(path_info)
hash_fs_path = self.hash_to_path(hash_)
fs_path = self.fs.path.with_name(
hash_fs_path,
self.fs.path.name(hash_fs_path) + self.UNPACKED_DIR_SUFFIX,
)
self.fs.remove(fs_path)
def _unprotect_file(self, path):
if self.fs.is_symlink(path) or self.fs.is_hardlink(path):
@@ -126,47 +129,47 @@ class LocalObjectDB(ObjectDB):
os.chmod(path, self._file_mode)
def _unprotect_dir(self, path):
for fname in self.fs.walk_files(path):
for fname in self.fs.find(path):
self._unprotect_file(fname)
def unprotect(self, path_info):
if not os.path.exists(path_info):
def unprotect(self, fs_path):
if not os.path.exists(fs_path):
from dvc.exceptions import DvcException
raise DvcException(
f"can't unprotect non-existing data '{path_info}'"
f"can't unprotect non-existing data '{fs_path}'"
)
if os.path.isdir(path_info):
self._unprotect_dir(path_info)
if os.path.isdir(fs_path):
self._unprotect_dir(fs_path)
else:
self._unprotect_file(path_info)
self._unprotect_file(fs_path)
def protect(self, path_info):
def protect(self, fs_path):
try:
os.chmod(path_info, self.CACHE_MODE)
os.chmod(fs_path, self.CACHE_MODE)
except OSError:
# NOTE: not being able to protect cache file is not fatal, it
# might happen on funky filesystems (e.g. Samba, see #5255),
# read-only filesystems or in a shared cache scenario.
logger.trace("failed to protect '%s'", path_info, exc_info=True)
logger.trace("failed to protect '%s'", fs_path, exc_info=True)
def is_protected(self, path_info):
def is_protected(self, fs_path):
try:
mode = os.stat(path_info).st_mode
mode = os.stat(fs_path).st_mode
except FileNotFoundError:
return False
return stat.S_IMODE(mode) == self.CACHE_MODE
def set_exec(self, path_info):
mode = os.stat(path_info).st_mode | stat.S_IEXEC
def set_exec(self, fs_path):
mode = os.stat(fs_path).st_mode | stat.S_IEXEC
try:
os.chmod(path_info, mode)
os.chmod(fs_path, mode)
except OSError:
logger.trace(
"failed to chmod '%s' '%s'",
oct(mode),
path_info,
fs_path,
exc_info=True,
)
+15 -11
View File
@@ -10,9 +10,9 @@ from ..reference import ReferenceHashFile
from .base import ObjectDB
if TYPE_CHECKING:
from dvc.fs.base import BaseFileSystem
from dvc.fs.base import FileSystem
from dvc.hash_info import HashInfo
from dvc.types import AnyPath, DvcPath
from dvc.types import AnyPath
logger = logging.getLogger(__name__)
@@ -26,7 +26,7 @@ class ReferenceObjectDB(ObjectDB):
def __init__(self, *args, **kwargs):
super().__init__(*args, **kwargs)
self._fs_cache: Dict[tuple, "BaseFileSystem"] = {}
self._fs_cache: Dict[tuple, "FileSystem"] = {}
self._obj_cache: Dict["HashInfo", "ReferenceHashFile"] = {}
def get(self, hash_info: "HashInfo"):
@@ -36,9 +36,9 @@ class ReferenceObjectDB(ObjectDB):
return self._obj_cache[hash_info]
except KeyError:
pass
path_info = self.hash_to_path(hash_info.value)
fs_path = self.hash_to_path(hash_info.value)
try:
with self.fs.open(path_info, "rb") as fobj:
with self.fs.open(fs_path, "rb") as fobj:
ref_file = ReferenceHashFile.from_bytes(
fobj.read(), fs_cache=self._fs_cache
)
@@ -47,23 +47,27 @@ class ReferenceObjectDB(ObjectDB):
try:
ref_file.check(self, check_hash=False)
except ObjectFormatError:
self.fs.remove(path_info)
self.fs.remove(fs_path)
raise
self._obj_cache[hash_info] = ref_file
return ref_file
def _add_file(
self,
from_fs: "BaseFileSystem",
from_fs: "FileSystem",
from_info: "AnyPath",
to_info: "DvcPath",
to_info: "AnyPath",
hash_info: "HashInfo",
move: bool = False,
hardlink: bool = False,
):
self.makedirs(to_info.parent)
self.makedirs(self.fs.path.parent(to_info))
if hash_info.isdir:
return super()._add_file(
from_fs, from_info, to_info, hash_info, move
from_fs,
from_info,
to_info,
hash_info,
hardlink=hardlink,
)
ref_file = ReferenceHashFile(from_info, from_fs, hash_info)
self._obj_cache[hash_info] = ref_file
+4 -4
View File
@@ -25,15 +25,15 @@ this.message = (
def slow_link_guard(f):
@wraps(f)
def wrapper(odb, *args, **kwargs):
def wrapper(self, odb, *args, **kwargs):
if this.already_displayed:
return f(odb, *args, **kwargs)
return f(self, odb, *args, **kwargs)
if not odb.slow_link_warning or odb.cache_types:
return f(odb, *args, **kwargs)
return f(self, odb, *args, **kwargs)
start = time.time()
result = f(odb, *args, **kwargs)
result = f(self, odb, *args, **kwargs)
delta = time.time() - start
if delta >= this.timeout_seconds:
+134
View File
@@ -0,0 +1,134 @@
from dataclasses import dataclass, field
from typing import TYPE_CHECKING, List, Optional, Tuple
if TYPE_CHECKING:
from dvc.hash_info import HashInfo
from .file import HashFile
ADD = "add"
MODIFY = "modify"
DELETE = "delete"
UNCHANGED = "unchanged"
@dataclass
class TreeEntry:
in_cache: bool
key: Tuple[str]
oid: Optional["HashInfo"] = field(default=None)
def __bool__(self):
return bool(self.oid)
def __eq__(self, other):
if not isinstance(other, TreeEntry):
return False
if self.key != other.key:
return False
return self.oid == other.oid
@dataclass
class Change:
old: TreeEntry
new: TreeEntry
@property
def typ(self):
if not self.old and not self.new:
return UNCHANGED
if self.old and not self.new:
return DELETE
if not self.old and self.new:
return ADD
if self.old != self.new:
return MODIFY
return UNCHANGED
def __bool__(self):
return self.typ != UNCHANGED
@dataclass
class DiffResult:
added: List[Change] = field(default_factory=list, compare=True)
modified: List[Change] = field(default_factory=list, compare=True)
deleted: List[Change] = field(default_factory=list, compare=True)
unchanged: List[Change] = field(default_factory=list, compare=True)
def __bool__(self):
return bool(self.added or self.modified or self.deleted)
ROOT = ("",)
def diff(
old: Optional["HashFile"], new: Optional["HashFile"], cache
) -> DiffResult:
from .tree import Tree
if old is None and new is None:
return DiffResult()
def _get_keys(obj):
if not obj:
return []
return [ROOT] + (
[key for key, _, _ in obj] if isinstance(obj, Tree) else []
)
old_keys = set(_get_keys(old))
new_keys = set(_get_keys(new))
def _get_oid(obj, key):
if not obj or key == ROOT:
return obj.hash_info if obj else None
entry_obj = obj.get(cache, key)
return entry_obj.hash_info if entry_obj else None
def _in_cache(oid, cache):
from .errors import ObjectFormatError
if not oid:
return False
try:
cache.check(oid)
return True
except (FileNotFoundError, ObjectFormatError):
return False
ret = DiffResult()
for key in old_keys | new_keys:
old_oid = _get_oid(old, key)
new_oid = _get_oid(new, key)
change = Change(
old=TreeEntry(_in_cache(old_oid, cache), key, old_oid),
new=TreeEntry(_in_cache(new_oid, cache), key, new_oid),
)
if change.typ == ADD:
ret.added.append(change)
elif change.typ == MODIFY:
ret.modified.append(change)
elif change.typ == DELETE:
ret.deleted.append(change)
else:
assert change.typ == UNCHANGED
if not change.new.in_cache and not (
change.new.oid and change.new.oid.isdir
):
ret.modified.append(change)
else:
ret.unchanged.append(change)
return ret
+11 -15
View File
@@ -6,7 +6,7 @@ from typing import TYPE_CHECKING, Optional
from .errors import ObjectFormatError
if TYPE_CHECKING:
from dvc.fs.base import BaseFileSystem
from dvc.fs.base import FileSystem
from dvc.hash_info import HashInfo
from dvc.types import AnyPath
@@ -18,20 +18,16 @@ logger = logging.getLogger(__name__)
class HashFile:
def __init__(
self,
path_info: Optional["AnyPath"],
fs: Optional["BaseFileSystem"],
fs_path: Optional["AnyPath"],
fs: Optional["FileSystem"],
hash_info: "HashInfo",
name: Optional[str] = None,
):
self.path_info = path_info
self.fs_path = fs_path
self.fs = fs
self.hash_info = hash_info
self.name = name
@property
def size(self):
return self.hash_info.size
def __len__(self):
return 1
@@ -45,7 +41,7 @@ class HashFile:
if not isinstance(other, HashFile):
return False
return (
self.path_info == other.path_info
self.fs_path == other.fs_path
and self.fs == other.fs
and self.hash_info == other.hash_info
)
@@ -54,7 +50,7 @@ class HashFile:
return hash(
(
self.hash_info,
self.path_info,
self.fs_path,
self.fs.scheme if self.fs else None,
)
)
@@ -62,9 +58,9 @@ class HashFile:
def check(self, odb: "ObjectDB", check_hash: bool = True):
if not check_hash:
assert self.fs
if not self.fs.exists(self.path_info):
if not self.fs.exists(self.fs_path):
raise FileNotFoundError(
errno.ENOENT, os.strerror(errno.ENOENT), self.path_info
errno.ENOENT, os.strerror(errno.ENOENT), self.fs_path
)
else:
return None
@@ -74,13 +70,13 @@ class HashFile:
def _check_hash(self, odb):
from .stage import get_file_hash
actual = get_file_hash(
self.path_info, self.fs, self.hash_info.name, odb.state
_, actual = get_file_hash(
self.fs_path, self.fs, self.hash_info.name, odb.state
)
logger.trace(
"cache '%s' expected '%s' actual '%s'",
self.path_info,
self.fs_path,
self.hash_info,
actual,
)
+32
View File
@@ -0,0 +1,32 @@
from collections import OrderedDict
from dataclasses import dataclass, field
from typing import Optional
@dataclass
class Meta:
PARAM_SIZE = "size"
PARAM_NFILES = "nfiles"
size: Optional[int] = field(default=None)
nfiles: Optional[int] = field(default=None)
@classmethod
def from_dict(cls, d):
if not d:
return cls()
size = d.pop(cls.PARAM_SIZE, None)
nfiles = d.pop(cls.PARAM_NFILES, None)
return cls(size=size, nfiles=nfiles)
def to_dict(self):
ret = OrderedDict()
if self.size is not None:
ret[self.PARAM_SIZE] = self.size
if self.nfiles is not None:
ret[self.PARAM_NFILES] = self.nfiles
return ret
+17 -18
View File
@@ -8,7 +8,7 @@ from .errors import ObjectFormatError
from .file import HashFile
if TYPE_CHECKING:
from dvc.fs.base import BaseFileSystem
from dvc.fs.base import FileSystem
from dvc.hash_info import HashInfo
from dvc.types import AnyPath
@@ -25,23 +25,23 @@ class ReferenceHashFile(HashFile):
def __init__(
self,
path_info: "AnyPath",
fs: "BaseFileSystem",
fs_path: "AnyPath",
fs: "FileSystem",
hash_info: "HashInfo",
checksum: Optional[str] = None,
**kwargs,
):
super().__init__(path_info, fs, hash_info, **kwargs)
self.checksum = checksum or fs.checksum(path_info)
super().__init__(fs_path, fs, hash_info, **kwargs)
self.checksum = checksum or fs.checksum(fs_path)
def __str__(self):
return f"ref object {self.hash_info} -> {self.path_info}"
return f"ref object {self.hash_info} -> {self.fs_path}"
def check(self, odb: "ObjectDB", check_hash: bool = True):
assert self.fs
if not self.fs.exists(self.path_info):
if not self.fs.exists(self.fs_path):
raise FileNotFoundError(
errno.ENOENT, os.strerror(errno.ENOENT), self.path_info
errno.ENOENT, os.strerror(errno.ENOENT), self.fs_path
)
if self.checksum != self._get_checksum():
raise ObjectFormatError(f"{self} is changed")
@@ -50,23 +50,22 @@ class ReferenceHashFile(HashFile):
def _get_checksum(self) -> str:
assert self.fs
return self.fs.checksum(self.path_info)
return self.fs.checksum(self.fs_path)
def to_bytes(self):
from dvc.fs.repo import RepoFileSystem
from dvc.path_info import PathInfo
# NOTE: dumping reference FS's this way is insecure, as the
# fully parsed remote FS config will include credentials
#
# ReferenceHashFiles should currently only be serialized in
# memory and not to disk
path_info = self.path_info
fs_path = self.fs_path
if isinstance(self.fs, RepoFileSystem):
path_info = PathInfo(path_info).relative_to(self.fs.root_dir)
fs_path = self.fs.path.relpath(fs_path, self.fs.root_dir)
dict_ = {
self.PARAM_PATH: path_info,
self.PARAM_PATH: fs_path,
self.PARAM_HASH: self.hash_info,
self.PARAM_CHECKSUM: self.checksum,
self.PARAM_FS_CONFIG: self.config_tuple(self.fs),
@@ -87,7 +86,7 @@ class ReferenceHashFile(HashFile):
raise ObjectFormatError("ReferenceHashFile is corrupted") from exc
try:
path_info = dict_[cls.PARAM_PATH]
fs_path = dict_[cls.PARAM_PATH]
hash_info = dict_[cls.PARAM_HASH]
except KeyError as exc:
raise ObjectFormatError("ReferenceHashFile is corrupted") from exc
@@ -98,19 +97,19 @@ class ReferenceHashFile(HashFile):
config = dict(config_pairs)
if RepoFileSystem.PARAM_REPO_URL in config:
fs = RepoFileSystem(**config)
path_info = fs.root_dir / path_info
fs_path = fs.path.join(fs.root_dir, fs_path)
else:
fs_cls = get_fs_cls(config, scheme=path_info.scheme)
fs_cls = get_fs_cls(config, scheme=scheme)
fs = fs_cls(**config)
return ReferenceHashFile(
path_info,
fs_path,
fs,
hash_info,
checksum=dict_.get(cls.PARAM_CHECKSUM),
)
@staticmethod
def config_tuple(fs: "BaseFileSystem"):
def config_tuple(fs: "FileSystem"):
return (
fs.scheme,
tuple(
+123 -104
View File
@@ -1,10 +1,9 @@
import hashlib
import logging
import os
import pathlib
from concurrent.futures import ThreadPoolExecutor
from functools import partial
from typing import TYPE_CHECKING, Dict, Tuple
from typing import TYPE_CHECKING, Dict, Optional, Tuple
from dvc.exceptions import DvcIgnoreInCollectedDirError
from dvc.hash_info import HashInfo
@@ -14,10 +13,11 @@ from dvc.utils import file_md5
from .db.reference import ReferenceObjectDB
from .file import HashFile
from .meta import Meta
if TYPE_CHECKING:
from dvc.fs.base import BaseFileSystem
from dvc.types import AnyPath, DvcPath
from dvc.fs.base import FileSystem
from dvc.types import AnyPath
from .db.base import ObjectDB
@@ -27,74 +27,92 @@ logger = logging.getLogger(__name__)
_STAGING_MEMFS_PATH = "dvc-staging"
def _upload_file(path_info, fs, odb, upload_odb):
def _upload_file(from_fs_path, fs, odb, upload_odb):
from dvc.utils import tmp_fname
from dvc.utils.stream import HashedStreamReader
tmp_info = upload_odb.path_info / tmp_fname()
with fs.open(path_info, mode="rb", chunk_size=fs.CHUNK_SIZE) as stream:
fs_path = upload_odb.fs.path
tmp_info = fs_path.join(upload_odb.fs_path, tmp_fname())
with fs.open(from_fs_path, mode="rb", chunk_size=fs.CHUNK_SIZE) as stream:
stream = HashedStreamReader(stream)
size = fs.getsize(path_info)
upload_odb.fs.upload(stream, tmp_info, desc=path_info.name, total=size)
size = fs.getsize(from_fs_path)
upload_odb.fs.upload(
stream, tmp_info, desc=fs_path.name(from_fs_path), total=size
)
odb.add(tmp_info, upload_odb.fs, stream.hash_info)
return path_info, odb.get(stream.hash_info)
meta = Meta(size=size)
return from_fs_path, meta, odb.get(stream.hash_info)
def _get_file_hash(path_info, fs, name):
info = fs.info(path_info)
def _adapt_info(info, scheme):
if scheme == "s3" and "ETag" in info:
info["etag"] = info["ETag"].strip('"')
elif scheme == "gs" and "etag" in info:
import base64
info["etag"] = base64.b64decode(info["etag"]).hex()
elif scheme.startswith("http") and (
"ETag" in info or "Content-MD5" in info
):
info["checksum"] = info.get("ETag") or info.get("Content-MD5")
return info
def _get_file_hash(fs_path, fs, name):
info = _adapt_info(fs.info(fs_path), fs.scheme)
if name in info:
assert not info[name].endswith(".dir")
return HashInfo(name, info[name], size=info["size"])
hash_value = info[name]
elif hasattr(fs, name):
func = getattr(fs, name)
hash_value = func(fs_path)
elif name == "md5":
hash_value = file_md5(fs_path, fs)
else:
raise NotImplementedError
func = getattr(fs, name, None)
if func:
return func(path_info)
if name == "md5":
return HashInfo(
name, file_md5(path_info, fs), size=fs.getsize(path_info)
)
raise NotImplementedError
meta = Meta(size=info["size"])
hash_info = HashInfo(name, hash_value)
return meta, hash_info
def get_file_hash(path_info, fs, name, state=None):
def get_file_hash(fs_path, fs, name, state=None):
if state:
hash_info = state.get( # pylint: disable=assignment-from-none
path_info, fs
meta, hash_info = state.get( # pylint: disable=assignment-from-none
fs_path, fs
)
if hash_info:
return hash_info
return meta, hash_info
hash_info = _get_file_hash(path_info, fs, name)
meta, hash_info = _get_file_hash(fs_path, fs, name)
if state:
assert ".dir" not in hash_info.value
state.save(path_info, fs, hash_info)
state.save(fs_path, fs, hash_info)
return hash_info
return meta, hash_info
def _get_file_obj(
path_info, fs, name, odb=None, upload_odb=None, dry_run=False
):
def _stage_file(fs_path, fs, name, odb=None, upload_odb=None, dry_run=False):
state = odb.state if odb else None
hash_info = get_file_hash(path_info, fs, name, state=state)
meta, hash_info = get_file_hash(fs_path, fs, name, state=state)
if upload_odb and not dry_run:
assert odb and name == "md5"
return _upload_file(path_info, fs, odb, upload_odb)
return _upload_file(fs_path, fs, odb, upload_odb)
if dry_run:
obj = HashFile(path_info, fs, hash_info)
obj = HashFile(fs_path, fs, hash_info)
else:
odb.add(path_info, fs, hash_info, move=False)
odb.add(fs_path, fs, hash_info, hardlink=False)
obj = odb.get(hash_info)
return path_info, obj
return fs_path, meta, obj
def _build_objects(
path_info,
fs_path,
fs,
name,
dvcignore=None,
@@ -103,9 +121,9 @@ def _build_objects(
**kwargs,
):
if dvcignore:
walk_iterator = dvcignore.walk_files(fs, path_info)
walk_iterator = dvcignore.find(fs, fs_path)
else:
walk_iterator = fs.walk_files(path_info)
walk_iterator = fs.find(fs_path)
with Tqdm(
unit="md5",
desc="Computing file/dir hashes (only done once)",
@@ -113,7 +131,7 @@ def _build_objects(
) as pbar:
worker = pbar.wrap_fn(
partial(
_get_file_obj,
_stage_file,
fs=fs,
name=name,
**kwargs,
@@ -125,17 +143,18 @@ def _build_objects(
yield from executor.map(worker, walk_iterator)
def _iter_objects(path_info, fs, name, **kwargs):
yield from _build_objects(path_info, fs, name, **kwargs)
def _iter_objects(fs_path, fs, name, **kwargs):
yield from _build_objects(fs_path, fs, name, **kwargs)
def _build_tree(path_info, fs, name, **kwargs):
def _build_tree(fs_path, fs, name, **kwargs):
from .tree import Tree
tree_meta = Meta(size=0, nfiles=0)
tree = Tree(None, None, None)
for file_info, obj in _iter_objects(path_info, fs, name, **kwargs):
if DvcIgnore.DVCIGNORE_FILE == file_info.name:
raise DvcIgnoreInCollectedDirError(file_info.parent)
for file_fs_path, meta, obj in _iter_objects(fs_path, fs, name, **kwargs):
if DvcIgnore.DVCIGNORE_FILE == fs.path.name(file_fs_path):
raise DvcIgnoreInCollectedDirError(fs.path.parent(file_fs_path))
# NOTE: this is lossy transformation:
# "hey\there" -> "hey/there"
@@ -145,11 +164,18 @@ def _build_tree(path_info, fs, name, **kwargs):
#
# Yes, this is a BUG, as long as we permit "/" in
# filenames on Windows and "\" on Unix
tree.add(file_info.relative_to(path_info).parts, obj)
return tree
key = fs.path.relparts(file_fs_path, fs_path)
assert key
tree.add(key, meta, obj.hash_info)
tree_meta.size += meta.size
tree_meta.nfiles += 1
return tree_meta, tree
def _get_tree_obj(path_info, fs, fs_info, name, odb=None, **kwargs):
def _stage_tree(fs_path, fs, fs_info, name, odb=None, **kwargs):
from .tree import Tree
value = fs_info.get(name)
@@ -157,51 +183,50 @@ def _get_tree_obj(path_info, fs, fs_info, name, odb=None, **kwargs):
hash_info = HashInfo(name, value)
try:
tree = Tree.load(odb, hash_info)
# NOTE: loaded entries are naive objects with hash_infos but no
# path_info. For staging trees, obj.path_info should be relative
# to the staging src `path_info` and src fs
for key, entry in tree:
entry.fs = fs
entry.path_info = path_info.joinpath(*key)
return tree
return Meta(nfiles=len(tree)), tree
except FileNotFoundError:
pass
tree = _build_tree(path_info, fs, name, odb=odb, **kwargs)
meta, tree = _build_tree(fs_path, fs, name, odb=odb, **kwargs)
state = odb.state if odb and odb.state else None
hash_info = None
if state:
hash_info = state.get( # pylint: disable=assignment-from-none
path_info, fs
_, hash_info = state.get( # pylint: disable=assignment-from-none
fs_path, fs
)
tree.digest(hash_info=hash_info)
odb.add(tree.path_info, tree.fs, tree.hash_info, move=True)
odb.add(tree.fs_path, tree.fs, tree.hash_info, hardlink=False)
raw = odb.get(tree.hash_info)
# cleanup unneeded memfs tmpfile and return tree based on the
# ODB fs/path
if odb.fs != tree.fs:
tree.fs.remove(tree.path_info)
tree.fs.remove(tree.fs_path)
tree.fs = raw.fs
tree.path_info = raw.path_info
return tree
tree.fs_path = raw.fs_path
return meta, tree
_url_cache: Dict[str, str] = {}
def _make_staging_url(path_info: "AnyPath"):
from dvc.path_info import CloudURLInfo
def _make_staging_url(
fs: "FileSystem", odb: "ObjectDB", fs_path: Optional[str]
):
from dvc.scheme import Schemes
url = CloudURLInfo(f"{Schemes.MEMORY}://{_STAGING_MEMFS_PATH}")
if path_info:
if isinstance(path_info, (str, pathlib.PurePath)):
path = os.path.abspath(path_info)
else:
path = str(path_info)
if path not in _url_cache:
_url_cache[path] = hashlib.sha256(path.encode("utf-8")).hexdigest()
url /= _url_cache[path]
url = f"{Schemes.MEMORY}://{_STAGING_MEMFS_PATH}"
if fs_path is not None:
if odb.fs.scheme == Schemes.LOCAL:
fs_path = os.path.abspath(fs_path)
if fs_path not in _url_cache:
_url_cache[fs_path] = hashlib.sha256(
fs_path.encode("utf-8")
).hexdigest()
url = fs.path.join(url, _url_cache[fs_path])
return url
@@ -214,18 +239,18 @@ def _get_staging(odb: "ObjectDB") -> "ObjectDB":
from dvc.fs.memory import MemoryFileSystem
fs = MemoryFileSystem()
path_info = _make_staging_url(odb.path_info)
fs_path = _make_staging_url(fs, odb, odb.fs_path)
state = odb.state
return ReferenceObjectDB(fs, path_info, state=state)
return ReferenceObjectDB(fs, fs_path, state=state)
def _load_from_state(odb, staging, path_info, fs, name):
def _load_from_state(odb, staging, fs_path, fs, name):
from . import check, load
from .errors import ObjectFormatError
from .tree import Tree
state = odb.state
hash_info = state.get(path_info, fs)
meta, hash_info = state.get(fs_path, fs)
if hash_info:
for odb_ in (odb, staging):
if odb_.exists(hash_info):
@@ -233,16 +258,9 @@ def _load_from_state(odb, staging, path_info, fs, name):
obj = load(odb_, hash_info)
check(odb_, obj, check_hash=False)
if isinstance(obj, Tree):
obj.hash_info.nfiles = len(obj)
for key, entry in obj:
entry.fs = fs
entry.path_info = path_info.joinpath(*key)
else:
obj.fs = fs
obj.path_info = path_info
meta.nfiles = len(obj)
assert obj.hash_info.name == name
obj.hash_info.size = hash_info.size
return odb_, obj
return odb_, meta, obj
except (ObjectFormatError, FileNotFoundError):
pass
raise FileNotFoundError
@@ -255,10 +273,10 @@ def _stage_external_tree_info(odb, tree, name):
# that would be universal for all clouds.
assert odb and name != "md5"
odb.add(tree.path_info, tree.fs, tree.hash_info)
odb.add(tree.fs_path, tree.fs, tree.hash_info)
raw = odb.get(tree.hash_info)
hash_info = get_file_hash(raw.path_info, raw.fs, name, state=odb.state)
tree.path_info = raw.path_info
_, hash_info = get_file_hash(raw.fs_path, raw.fs, name, state=odb.state)
tree.fs_path = raw.fs_path
tree.fs = raw.fs
tree.hash_info.name = hash_info.name
tree.hash_info.value = hash_info.value
@@ -269,13 +287,13 @@ def _stage_external_tree_info(odb, tree, name):
def stage(
odb: "ObjectDB",
path_info: "DvcPath",
fs: "BaseFileSystem",
fs_path: "AnyPath",
fs: "FileSystem",
name: str,
upload: bool = False,
dry_run: bool = False,
**kwargs,
) -> Tuple["ObjectDB", "HashFile"]:
) -> Tuple["ObjectDB", "Meta", "HashFile"]:
"""Stage (prepare) objects from the given path for addition to an ODB.
Returns at tuple of (staging_odb, object) where addition to the ODB can
@@ -289,19 +307,20 @@ def stage(
ODB filesystem, and staged objects will reference the uploaded path rather
than the original source path.
"""
assert path_info and path_info.scheme == fs.scheme
assert fs_path
# assert scheme(fs_path) == fs.scheme
details = fs.info(path_info)
details = fs.info(fs_path)
staging = _get_staging(odb)
if odb:
try:
return _load_from_state(odb, staging, path_info, fs, name)
return _load_from_state(odb, staging, fs_path, fs, name)
except FileNotFoundError:
pass
if details["type"] == "directory":
obj = _get_tree_obj(
path_info,
meta, obj = _stage_tree(
fs_path,
fs,
details,
name,
@@ -314,8 +333,8 @@ def stage(
if name != "md5":
obj = _stage_external_tree_info(odb, obj, name)
else:
_, obj = _get_file_obj(
path_info,
_, meta, obj = _stage_file(
fs_path,
fs,
name,
odb=staging,
@@ -324,6 +343,6 @@ def stage(
)
if odb and odb.state and obj.hash_info:
odb.state.save(path_info, fs, obj.hash_info)
odb.state.save(fs_path, fs, obj.hash_info)
return staging, obj
return staging, meta, obj
+7 -9
View File
@@ -56,7 +56,7 @@ def _indexed_dir_hashes(odb, index, dir_objs, name, cache_odb):
tree = Tree.load(cache_odb, HashInfo(name, dir_hash))
except FileNotFoundError:
continue
file_hashes = [entry.hash_info.value for _, entry in tree]
file_hashes = [oid.value for _, _, oid in tree]
if dir_hash not in index:
logger.debug(
"Indexing new .dir '%s' with '%s' nested files",
@@ -86,7 +86,7 @@ def status(
exists: objs that exist in odb
missing: objs that do not exist in ODB
"""
logger.debug("Preparing to collect status from '%s'", odb.path_info)
logger.debug("Preparing to collect status from '%s'", odb.fs_path)
if not name:
name = odb.fs.PARAM_CHECKSUM
@@ -102,9 +102,9 @@ def status(
tree = None
else:
tree = Tree.load(cache_odb, hash_info)
for _, entry in tree:
assert entry.hash_info and entry.hash_info.value
hash_infos[entry.hash_info.value] = entry.hash_info
for _, _, oid in tree:
assert oid and oid.value
hash_infos[oid.value] = oid
if index:
dir_objs[hash_info.value] = tree
hash_infos[hash_info.value] = hash_info
@@ -116,7 +116,7 @@ def status(
hashes: Set[str] = set(hash_infos.keys())
exists: Set[str] = set()
logger.debug("Collecting status from '%s'", odb.path_info)
logger.debug("Collecting status from '%s'", odb.fs_path)
if index and hashes:
if dir_objs:
exists = hashes.intersection(
@@ -128,9 +128,7 @@ def status(
hashes.difference_update(exists)
if hashes:
exists.update(
odb.hashes_exist(hashes, name=str(odb.path_info), **kwargs)
)
exists.update(odb.hashes_exist(hashes, name=odb.fs_path, **kwargs))
return StatusResult(
{hash_infos[hash_] for hash_ in exists},
{hash_infos[hash_] for hash_ in (hashes - exists)},
+15 -11
View File
@@ -20,9 +20,9 @@ logger = logging.getLogger(__name__)
def _log_exceptions(func):
@wraps(func)
def wrapper(path_info, *args, **kwargs):
def wrapper(fs_path, *args, **kwargs):
try:
func(path_info, *args, **kwargs)
func(fs_path, *args, **kwargs)
return 0
except Exception as exc: # pylint: disable=broad-except
# NOTE: this means we ran out of file descriptors and there is no
@@ -31,7 +31,7 @@ def _log_exceptions(func):
if isinstance(exc, OSError) and exc.errno == errno.EMFILE:
raise
logger.exception("failed to transfer '%s'", path_info)
logger.exception("failed to transfer '%s'", fs_path)
return 1
return wrapper
@@ -74,7 +74,7 @@ def _do_transfer(
dir_obj = find_tree_by_obj_id([cache_odb, src], dir_hash)
assert dir_obj
entry_ids = {entry.hash_info for _, entry in dir_obj}
entry_ids = {oid for _, _, oid in dir_obj}
bound_file_ids = all_file_ids & entry_ids
all_file_ids -= entry_ids
@@ -87,8 +87,8 @@ def _do_transfer(
)
logger.error(
"failed to upload '%s' to '%s'",
src.get(dir_obj.hash_info).path_info,
dest.get(dir_obj.hash_info).path_info,
src.get(dir_obj.hash_info).fs_path,
dest.get(dir_obj.hash_info).fs_path,
)
total_fails += dir_fails + 1
elif entry_ids.intersection(missing_ids):
@@ -117,7 +117,7 @@ def _do_transfer(
# index successfully pushed dirs
if dest_index:
for dir_obj in succeeded_dir_objs:
file_hashes = {entry.hash_info.value for _, entry in dir_obj}
file_hashes = {oid.value for _, _, oid in dir_obj}
logger.debug(
"Indexing pushed dir '%s' with '%s' nested files",
dir_obj.hash_info,
@@ -133,7 +133,7 @@ def transfer(
obj_ids: Iterable["HashInfo"],
jobs: Optional[int] = None,
verify: bool = False,
move: bool = False,
hardlink: bool = False,
**kwargs,
) -> int:
"""Transfer (copy) the specified objects from one ODB to another.
@@ -144,8 +144,8 @@ def transfer(
logger.debug(
"Preparing to transfer data from '%s' to '%s'",
src.path_info,
dest.path_info,
src.fs_path,
dest.fs_path,
)
if src == dest:
return 0
@@ -157,7 +157,11 @@ def transfer(
def func(hash_info: "HashInfo") -> None:
obj = src.get(hash_info)
return dest.add(
obj.path_info, obj.fs, obj.hash_info, verify=verify, move=move
obj.fs_path,
obj.fs,
obj.hash_info,
verify=verify,
hardlink=hardlink,
)
total = len(status.new)
+33 -42
View File
@@ -12,6 +12,8 @@ from .stage import get_file_hash
if TYPE_CHECKING:
from dvc.hash_info import HashInfo
from .meta import Meta
logger = logging.getLogger(__name__)
@@ -20,7 +22,7 @@ class Tree(HashFile):
def __init__(self, *args, **kwargs):
super().__init__(*args, **kwargs)
self._dict: Dict[Tuple[str], "HashFile"] = {}
self._dict: Dict[Tuple[str], Tuple["Meta", "HashInfo"]] = {}
@cached_property
def trie(self):
@@ -28,38 +30,34 @@ class Tree(HashFile):
return Trie(self._dict)
def add(self, key, obj):
def add(self, key: Tuple[str], meta: "Meta", oid: "HashInfo"):
self.__dict__.pop("trie", None)
self._dict[key] = obj
self._dict[key] = (meta, oid)
def digest(self, hash_info: Optional["HashInfo"] = None):
from dvc.fs.memory import MemoryFileSystem
from dvc.path_info import CloudURLInfo
from dvc.utils import tmp_fname
memfs = MemoryFileSystem()
path_info = CloudURLInfo("memory://{}".format(tmp_fname("")))
with memfs.open(path_info, "wb") as fobj:
fs_path = "memory://{}".format(tmp_fname(""))
with memfs.open(fs_path, "wb") as fobj:
fobj.write(self.as_bytes())
self.fs = memfs
self.path_info = path_info
self.fs_path = fs_path
if hash_info:
self.hash_info = hash_info
else:
self.hash_info = get_file_hash(path_info, memfs, "md5")
_, self.hash_info = get_file_hash(fs_path, memfs, "md5")
assert self.hash_info.value
self.hash_info.value += ".dir"
try:
self.hash_info.size = sum(obj.size for _, obj in self)
except TypeError:
self.hash_info.size = None
self.hash_info.nfiles = len(self)
def __len__(self):
return len(self._dict)
def __iter__(self):
yield from self._dict.items()
yield from (
(key, value[0], value[1]) for key, value in self._dict.items()
)
def as_dict(self):
return self._dict.copy()
@@ -73,10 +71,10 @@ class Tree(HashFile):
{
# NOTE: not using hash_info.to_dict() because we don't want
# size/nfiles fields at this point.
obj.hash_info.name: obj.hash_info.value,
oid.name: oid.value,
self.PARAM_RELPATH: posixpath.sep.join(parts),
}
for parts, obj in self._dict.items() # noqa: B301
for parts, _, oid in self # noqa: B301
),
key=itemgetter(self.PARAM_RELPATH),
)
@@ -94,8 +92,7 @@ class Tree(HashFile):
relpath = entry.pop(cls.PARAM_RELPATH)
parts = tuple(relpath.split(posixpath.sep))
hash_info = HashInfo.from_dict(entry)
obj = HashFile(None, None, hash_info)
tree.add(parts, obj)
tree.add(parts, None, hash_info)
return tree
@classmethod
@@ -103,7 +100,7 @@ class Tree(HashFile):
obj = odb.get(hash_info)
try:
with obj.fs.open(obj.path_info, "r") as fobj:
with obj.fs.open(obj.fs_path, "r") as fobj:
raw = json.load(fobj)
except ValueError as exc:
raise ObjectFormatError(f"{obj} is corrupted") from exc
@@ -111,15 +108,13 @@ class Tree(HashFile):
if not isinstance(raw, list):
logger.error(
"dir cache file format error '%s' [skipping the file]",
obj.path_info,
obj.fs_path,
)
raise ObjectFormatError(f"{obj} is corrupted")
tree = cls.from_list(raw)
tree.path_info = obj.path_info
tree.fs_path = obj.fs_path
tree.fs = obj.fs
for _, entry_obj in tree:
entry_obj.fs = obj.fs
tree.hash_info = hash_info
return tree
@@ -129,43 +124,42 @@ class Tree(HashFile):
inside prefix.
The returned tree will contain the original tree's hash_info and
path_info.
fs_path.
Returns an empty tree if no object exists at the specified prefix.
"""
tree = Tree(self.path_info, self.fs, self.hash_info)
tree = Tree(self.fs_path, self.fs, self.hash_info)
try:
for key, obj in self.trie.items(prefix):
tree.add(key, obj)
for key, (meta, oid) in self.trie.items(prefix):
tree.add(key, meta, oid)
except KeyError:
pass
return tree
def get(self, prefix: Tuple[str]) -> Optional[HashFile]:
def get(self, odb, prefix: Tuple[str]) -> Optional[HashFile]:
"""Return object at the specified prefix in this tree.
Returns None if no object exists at the specified prefix.
"""
obj = self._dict.get(prefix)
if obj:
return obj
_, oid = self._dict.get(prefix) or (None, None)
if oid:
return odb.get(oid)
tree = Tree(None, None, None)
depth = len(prefix)
try:
for key, obj in self.trie.items(prefix):
tree.add(key[depth:], obj)
for key, (meta, entry_oid) in self.trie.items(prefix):
tree.add(key[depth:], meta, entry_oid)
except KeyError:
return None
tree.digest()
return tree
def _get_dir_size(odb, tree):
def du(odb, tree):
try:
return sum(
odb.fs.getsize(odb.hash_to_path_info(obj.hash_info.value))
for _, obj in tree
odb.fs.getsize(odb.hash_to_path(oid.value)) for _, _, oid in tree
)
except FileNotFoundError:
return None
@@ -226,11 +220,8 @@ def merge(odb, ancestor_info, our_info, their_info):
merged_dict = _merge(ancestor.as_dict(), our.as_dict(), their.as_dict())
merged = Tree(None, None, None)
for key, hi in merged_dict.items():
merged.add(key, hi)
for key, (meta, oid) in merged_dict.items():
merged.add(key, meta, oid)
merged.digest()
odb.add(merged.path_info, merged.fs, merged.hash_info)
hash_info = merged.hash_info
hash_info.size = _get_dir_size(odb, merged)
return hash_info
return merged
+105 -86
View File
@@ -1,7 +1,6 @@
import logging
import os
from collections import defaultdict
from copy import copy
from typing import TYPE_CHECKING, Dict, Optional, Set, Type
from urllib.parse import urlparse
@@ -9,7 +8,6 @@ from funcy import collecting, project
from voluptuous import And, Any, Coerce, Length, Lower, Required, SetTo
from dvc import objects, prompt
from dvc.checkout import checkout
from dvc.exceptions import (
CheckoutError,
CollectCacheError,
@@ -17,6 +15,7 @@ from dvc.exceptions import (
MergeError,
RemoteCacheRequiredError,
)
from dvc.objects.checkout import checkout
from .fs import get_cloud_fs
from .fs.hdfs import HDFSFileSystem
@@ -26,6 +25,7 @@ from .hash_info import HashInfo
from .istextfile import istextfile
from .objects import Tree
from .objects.errors import ObjectFormatError
from .objects.meta import Meta
from .objects.stage import stage as ostage
from .objects.transfer import transfer as otransfer
from .scheme import Schemes
@@ -292,7 +292,7 @@ class Output:
):
self.repo = stage.repo if stage else None
fs_cls, fs_config, path_info = get_cloud_fs(self.repo, url=path)
fs_cls, fs_config, fs_path = get_cloud_fs(self.repo, url=path)
self.fs = fs_cls(**fs_config)
if (
@@ -309,13 +309,13 @@ class Output:
# here is a list and comments:
#
# .def_path - path from definition in DVC file
# .path_info - PathInfo/URLInfo structured resolved path
# .fspath - local only, resolved
# .__str__ - for presentation purposes, def_path/relpath
#
# By resolved path, which contains actual location,
# should be absolute and don't contain remote:// refs.
self.stage = stage
self.meta = Meta.from_dict(info)
self.hash_info = HashInfo.from_dict(info)
self.use_cache = False if self.IS_DEPENDENCY else cache
self.metric = False if self.IS_DEPENDENCY else metric
@@ -325,32 +325,32 @@ class Output:
self.live = live
self.desc = desc
self.path_info = self._parse_path(self.fs, path_info)
self.fs_path = self._parse_path(self.fs, fs_path)
if self.use_cache and self.odb is None:
raise RemoteCacheRequiredError(self.path_info)
raise RemoteCacheRequiredError(self.fs.scheme, self.fs_path)
self.obj = None
self.isexec = False if self.IS_DEPENDENCY else isexec
self.remote = remote
def _parse_path(self, fs, path_info):
def _parse_path(self, fs, fs_path):
if fs.scheme != "local":
return path_info
return fs_path
parsed = urlparse(self.def_path)
if parsed.scheme != "remote":
# NOTE: we can path either from command line or .dvc file,
# so we should expect both posix and windows style paths.
# PathInfo accepts both, i.e. / works everywhere, \ only on win.
# paths accepts both, i.e. / works everywhere, \ only on win.
#
# FIXME: if we have Windows path containing / or posix one with \
# then we have #2059 bug and can't really handle that.
if self.stage and not path_info.is_absolute():
path_info = self.stage.wdir / path_info
if self.stage and not os.path.isabs(fs_path):
fs_path = fs.path.join(self.stage.wdir, fs_path)
abs_p = os.path.abspath(os.path.normpath(path_info))
return fs.PATH_CLS(abs_p)
abs_p = os.path.abspath(os.path.normpath(fs_path))
return abs_p
def __repr__(self):
return "{class_name}: '{def_path}'".format(
@@ -370,9 +370,9 @@ class Output:
cur_dir = os.getcwd()
if path_isin(cur_dir, self.repo.root_dir):
return relpath(self.path_info, cur_dir)
return relpath(self.fs_path, cur_dir)
return relpath(self.path_info, self.repo.root_dir)
return relpath(self.fs_path, self.repo.root_dir)
@property
def scheme(self):
@@ -390,7 +390,7 @@ class Output:
return False
return self.repo and path_isin(
os.path.realpath(self.path_info), self.repo.root_dir
os.path.realpath(self.fs_path), self.repo.root_dir
)
@property
@@ -406,7 +406,9 @@ class Output:
@property
def cache_path(self):
return self.odb.hash_to_path_info(self.hash_info.value).url
return self.odb.fs.unstrip_protocol(
self.odb.hash_to_path(self.hash_info.value)
)
def get_hash(self):
if self.use_cache:
@@ -415,9 +417,9 @@ class Output:
else:
odb = self.repo.odb.local
name = self.fs.PARAM_CHECKSUM
_, obj = ostage(
_, _, obj = ostage(
odb,
self.path_info,
self.fs_path,
self.fs,
name,
dvcignore=self.dvcignore,
@@ -437,10 +439,10 @@ class Output:
@property
def exists(self):
if self._is_path_dvcignore(self.path_info):
if self._is_path_dvcignore(self.fs_path):
return False
return self.fs.exists(self.path_info)
return self.fs.exists(self.fs_path)
def changed_checksum(self):
return self.hash_info != self.get_hash()
@@ -490,17 +492,17 @@ class Output:
@property
def is_empty(self):
return self.fs.is_empty(self.path_info)
return self.fs.is_empty(self.fs_path)
def isdir(self):
if self._is_path_dvcignore(self.path_info):
if self._is_path_dvcignore(self.fs_path):
return False
return self.fs.isdir(self.path_info)
return self.fs.isdir(self.fs_path)
def isfile(self):
if self._is_path_dvcignore(self.path_info):
if self._is_path_dvcignore(self.fs_path):
return False
return self.fs.isfile(self.path_info)
return self.fs.isfile(self.fs_path)
# pylint: disable=no-member
@@ -511,13 +513,13 @@ class Output:
if self.repo.scm.is_tracked(self.fspath):
raise OutputAlreadyTrackedError(self)
self.repo.scm.ignore(self.fspath)
self.repo.scm_context.ignore(self.fspath)
def ignore_remove(self):
if not self.use_scm_ignore:
return
self.repo.scm.ignore_remove(self.fspath)
self.repo.scm_context.ignore_remove(self.fspath)
# pylint: enable=no-member
@@ -537,7 +539,15 @@ class Output:
self.verify_metric()
if not self.use_cache:
self.hash_info = self.get_hash()
_, self.meta, obj = ostage(
self.repo.odb.local,
self.fs_path,
self.fs,
self.fs.PARAM_CHECKSUM,
dvcignore=self.dvcignore,
dry_run=True,
)
self.hash_info = obj.hash_info
if not self.IS_DEPENDENCY:
logger.debug(
"Output '%s' doesn't use cache. Skipping saving.", self
@@ -546,23 +556,19 @@ class Output:
assert not self.IS_DEPENDENCY
if not self.changed():
logger.debug("Output '%s' didn't change. Skipping saving.", self)
return
_, self.obj = ostage(
_, self.meta, self.obj = ostage(
self.odb,
self.path_info,
self.fs_path,
self.fs,
self.odb.fs.PARAM_CHECKSUM,
dvcignore=self.dvcignore,
)
self.hash_info = self.obj.hash_info
self.isexec = self.isfile() and self.fs.isexec(self.path_info)
self.isexec = self.isfile() and self.fs.isexec(self.fs_path)
def set_exec(self):
if self.isfile() and self.isexec:
self.odb.set_exec(self.path_info)
self.odb.set_exec(self.fs_path)
def commit(self, filter_info=None):
if not self.exists:
@@ -574,14 +580,14 @@ class Output:
granular = (
self.is_dir_checksum
and filter_info
and filter_info != self.path_info
and filter_info != self.fs_path
)
if granular:
obj = self._commit_granular_dir(filter_info)
else:
staging, obj = ostage(
staging, _, obj = ostage(
self.odb,
filter_info or self.path_info,
filter_info or self.fs_path,
self.fs,
self.odb.fs.PARAM_CHECKSUM,
dvcignore=self.dvcignore,
@@ -591,10 +597,10 @@ class Output:
self.odb,
{obj.hash_info},
shallow=False,
move=True,
hardlink=True,
)
checkout(
filter_info or self.path_info,
filter_info or self.fs_path,
self.fs,
obj,
self.odb,
@@ -605,30 +611,34 @@ class Output:
self.set_exec()
def _commit_granular_dir(self, filter_info):
prefix = filter_info.relative_to(self.path_info).parts
staging, save_obj = ostage(
prefix = self.fs.path.parts(
self.fs.path.relpath(filter_info, self.fs_path)
)
staging, _, save_obj = ostage(
self.odb,
self.path_info,
self.fs_path,
self.fs,
self.odb.fs.PARAM_CHECKSUM,
dvcignore=self.dvcignore,
)
save_obj = save_obj.filter(prefix)
checkout_obj = save_obj.get(prefix)
checkout_obj = save_obj.get(self.odb, prefix)
otransfer(
staging,
self.odb,
{save_obj.hash_info} | {entry.hash_info for _, entry in save_obj},
{save_obj.hash_info} | {oid for _, _, oid in save_obj},
shallow=True,
move=True,
hardlink=True,
)
return checkout_obj
def dumpd(self):
ret = copy(self.hash_info.to_dict())
ret = {**self.hash_info.to_dict(), **self.meta.to_dict()}
if self.is_in_repo:
path = self.path_info.relpath(self.stage.wdir).as_posix()
path = self.fs.path.as_posix(
relpath(self.fs_path, self.stage.wdir)
)
else:
path = self.def_path
@@ -679,22 +689,21 @@ class Output:
if not self.metric or self.plot:
return
path = os.fspath(self.path_info)
if not os.path.exists(path):
if not os.path.exists(self.fs_path):
return
name = "metrics" if self.metric else "plot"
if os.path.isdir(path):
if os.path.isdir(self.fs_path):
msg = "directory '%s' cannot be used as %s."
logger.debug(msg, str(self.path_info), name)
logger.debug(msg, str(self), name)
return
if not istextfile(path, self.fs):
if not istextfile(self.fs_path, self.fs):
msg = "binary file '{}' cannot be used as {}."
raise DvcException(msg.format(self.path_info, name))
raise DvcException(msg.format(self.fs_path, name))
def download(self, to, jobs=None):
self.fs.download(self.path_info, to.path_info, jobs=jobs)
self.fs.download(self.fs_path, to.fs_path, jobs=jobs)
def get_obj(self, filter_info=None, **kwargs):
if self.obj:
@@ -707,9 +716,10 @@ class Output:
else:
return None
if filter_info and filter_info != self.path_info:
prefix = filter_info.relative_to(self.path_info).parts
obj = obj.get(prefix)
fs_path = self.fs.path
if filter_info and filter_info != self.fs_path:
prefix = fs_path.relparts(filter_info, self.fs_path)
obj = obj.get(self.odb, prefix)
return obj
@@ -726,12 +736,12 @@ class Output:
if not self.use_cache:
if progress_callback:
progress_callback(
str(self.path_info), self.get_files_number(filter_info)
self.fs_path, self.get_files_number(filter_info)
)
return None
obj = self.get_obj(filter_info=filter_info)
if not obj and (filter_info and filter_info != self.path_info):
if not obj and (filter_info and filter_info != self.fs_path):
# backward compatibility
return None
@@ -744,7 +754,7 @@ class Output:
try:
modified = checkout(
filter_info or self.path_info,
filter_info or self.fs_path,
self.fs,
obj,
self.odb,
@@ -762,7 +772,7 @@ class Output:
return added, False if added else modified
def remove(self, ignore_remove=False):
self.fs.remove(self.path_info)
self.fs.remove(self.fs_path)
if self.scheme != Schemes.LOCAL:
return
@@ -772,16 +782,16 @@ class Output:
def move(self, out):
# pylint: disable=no-member
if self.scheme == "local" and self.use_scm_ignore:
self.repo.scm.ignore_remove(self.fspath)
self.repo.scm_context.ignore_remove(self.fspath)
self.fs.move(self.path_info, out.path_info)
self.fs.move(self.fs_path, out.fs_path)
self.def_path = out.def_path
self.path_info = out.path_info
self.fs_path = out.fs_path
self.save()
self.commit()
if self.scheme == "local" and self.use_scm_ignore:
self.repo.scm.ignore(self.fspath)
self.repo.scm_context.ignore(self.fspath)
def transfer(
self, source, odb=None, jobs=None, update=False, no_progress_bar=False
@@ -803,7 +813,7 @@ class Output:
upload = not (update and from_fs.isdir(from_info))
jobs = jobs or min((from_fs.jobs, odb.fs.jobs))
staging, obj = ostage(
staging, self.meta, obj = ostage(
odb,
from_info,
from_fs,
@@ -817,7 +827,7 @@ class Output:
odb,
{obj.hash_info},
jobs=jobs,
move=upload,
hardlink=False,
shallow=False,
)
@@ -831,15 +841,15 @@ class Output:
if not self.hash_info.isdir:
return 1
if not filter_info or filter_info == self.path_info:
return self.hash_info.nfiles or 0
if not filter_info or filter_info == self.fs_path:
return self.meta.nfiles or 0
obj = self.get_obj(filter_info=filter_info)
return len(obj) if obj else 0
def unprotect(self):
if self.exists:
self.odb.unprotect(self.path_info)
self.odb.unprotect(self.fs_path)
def get_dir_cache(self, **kwargs):
if not self.is_dir_checksum:
@@ -881,7 +891,7 @@ class Output:
"Cache for files inside will be lost. "
"Would you like to continue? Use '-f' to force."
)
if not force and not prompt.confirm(msg.format(self.path_info)):
if not force and not prompt.confirm(msg.format(self.fs_path)):
raise CollectCacheError(
"unable to fully collect used cache"
" without cache for directory '{}'".format(self)
@@ -889,8 +899,10 @@ class Output:
return None
obj = self.get_obj()
if filter_info and filter_info != self.path_info:
prefix = filter_info.relative_to(self.path_info).parts
if filter_info and filter_info != self.fs_path:
prefix = self.fs.path.parts(
self.fs.path.relpath(filter_info, self.fs_path)
)
obj = obj.filter(prefix)
return obj
@@ -946,9 +958,9 @@ class Output:
obj.hash_info.obj_name = name
oids = {obj.hash_info}
if isinstance(obj, Tree):
for key, entry_obj in obj:
entry_obj.hash_info.obj_name = self.fs.sep.join([name, *key])
oids.add(entry_obj.hash_info)
for key, _, oid in obj:
oid.obj_name = self.fs.sep.join([name, *key])
oids.add(oid)
return oids
def get_used_external(
@@ -981,8 +993,8 @@ class Output:
ignored = [
self.fs.PARAM_CHECKSUM,
HashInfo.PARAM_SIZE,
HashInfo.PARAM_NFILES,
Meta.PARAM_SIZE,
Meta.PARAM_NFILES,
]
for opt in ignored:
@@ -1000,7 +1012,7 @@ class Output:
)
def merge(self, ancestor, other):
from dvc.objects.tree import merge
from dvc.objects.tree import du, merge
assert other
@@ -1013,13 +1025,20 @@ class Output:
self._check_can_merge(self)
self._check_can_merge(other)
self.hash_info = merge(
merged = merge(
self.odb, ancestor_info, self.hash_info, other.hash_info
)
self.odb.add(merged.fs_path, merged.fs, merged.hash_info)
self.hash_info = merged.hash_info
self.meta = Meta(
size=du(self.odb, merged),
nfiles=len(merged),
)
@property
def fspath(self):
return self.path_info.fspath
return self.fs_path
@property
def is_decorated(self) -> bool:
@@ -1040,8 +1059,8 @@ ARTIFACT_SCHEMA = {
Output.PARAM_PLOT: bool,
Output.PARAM_PERSIST: bool,
Output.PARAM_CHECKPOINT: bool,
HashInfo.PARAM_SIZE: int,
HashInfo.PARAM_NFILES: int,
Meta.PARAM_SIZE: int,
Meta.PARAM_NFILES: int,
Output.PARAM_ISEXEC: bool,
}
+4 -5
View File
@@ -17,7 +17,6 @@ from funcy import cached_property, collecting, first, isa, join, reraise
from dvc.exceptions import DvcException
from dvc.parsing.interpolate import ParseError
from dvc.path_info import PathInfo
from dvc.utils import relpath
from .context import (
@@ -134,10 +133,10 @@ def make_definition(
class DataResolver:
def __init__(self, repo: "Repo", wdir: PathInfo, d: dict):
def __init__(self, repo: "Repo", wdir: str, d: dict):
self.fs = fs = repo.fs
self.wdir = wdir
self.relpath = relpath(self.wdir / "dvc.yaml")
self.relpath = relpath(fs.path.join(self.wdir, "dvc.yaml"))
vars_ = d.get(VARS_KWD, [])
check_interpolations(vars_, VARS_KWD, self.relpath)
@@ -232,7 +231,7 @@ class EntryDefinition:
def _resolve_wdir(
self, context: Context, name: str, wdir: str = None
) -> PathInfo:
) -> str:
if not wdir:
return self.wdir
@@ -240,7 +239,7 @@ class EntryDefinition:
wdir = to_str(context.resolve_str(wdir))
except (ContextError, ParseError) as exc:
format_and_raise(exc, f"'{self.where}.{name}.wdir'", self.relpath)
return self.wdir / wdir
return self.resolver.fs.path.join(self.wdir, wdir)
def resolve(self, **kwargs):
try:
+6 -8
View File
@@ -19,7 +19,6 @@ from dvc.parsing.interpolate import (
recurse,
str_interpolate,
)
from dvc.path_info import PathInfo
from dvc.utils import relpath
logger = logging.getLogger(__name__)
@@ -356,7 +355,7 @@ class Context(CtxDict):
@classmethod
def load_from(
cls, fs, path: PathInfo, select_keys: List[str] = None
cls, fs, path: str, select_keys: List[str] = None
) -> "Context":
from dvc.utils.serialize import LOADERS
@@ -396,18 +395,17 @@ class Context(CtxDict):
raise ReservedKeyError(matches)
return super().merge_update(other, overwrite=overwrite)
def merge_from(self, fs, item: str, wdir: PathInfo, overwrite=False):
def merge_from(self, fs, item: str, wdir: str, overwrite=False):
path, _, keys_str = item.partition(":")
select_keys = lfilter(bool, keys_str.split(",")) if keys_str else None
abspath = os.path.abspath(wdir / path)
path_info = PathInfo(abspath)
abspath = os.path.abspath(fs.path.join(wdir, path))
if abspath in self.imports:
if not select_keys and self.imports[abspath] is None:
return # allow specifying complete filepath multiple times
self.check_loaded(abspath, item, select_keys)
ctx = Context.load_from(fs, path_info, select_keys)
ctx = Context.load_from(fs, abspath, select_keys)
try:
self.merge_update(ctx, overwrite=overwrite)
@@ -439,12 +437,12 @@ class Context(CtxDict):
self,
fs,
vars_: List,
wdir: PathInfo,
wdir: str,
stage_name: str = None,
default: str = None,
):
if default:
to_import = wdir / default
to_import = fs.path.join(wdir, default)
if fs.exists(to_import):
self.merge_from(fs, default, wdir)
else:
+25
View File
@@ -0,0 +1,25 @@
from dvc.exceptions import DvcException
class ProcessNotTerminatedError(DvcException):
def __init__(self, name):
super().__init__(f"Managed process '{name}' has not been terminated.")
class ProcessNotFoundError(DvcException):
def __init__(self, name):
super().__init__(f"Managed process '{name}' does not exist.")
class TimeoutExpired(DvcException):
def __init__(self, cmd, timeout):
super().__init__(
f"'{cmd}' did not complete before timeout '{timeout}'"
)
self.cmd = cmd
self.timeout = timeout
class UnsupportedSignalError(DvcException):
def __init__(self, sig):
super().__init__(f"Unsupported signal: {sig}")
+154
View File
@@ -0,0 +1,154 @@
"""Serverless process manager."""
import json
import logging
import os
import signal
import sys
from typing import Generator, List, Optional, Tuple, Union
from funcy.flow import reraise
from shortuuid import uuid
from .exceptions import ProcessNotTerminatedError, UnsupportedSignalError
from .process import ManagedProcess, ProcessInfo
logger = logging.getLogger(__name__)
class ProcessManager:
"""Manager for controlling background ManagedProcess(es).
Spawned process entries are kept in the manager directory until they
are explicitly removed (with remove() or cleanup()) so that return
value and log information can be accessed after a process has completed.
"""
def __init__(self, wdir: Optional[str] = None):
self.wdir = wdir or "."
def __iter__(self) -> Generator[str, None, None]:
if not os.path.exists(self.wdir):
return
for name in os.listdir(self.wdir):
yield name
def __getitem__(self, key: str) -> "ProcessInfo":
info_path = os.path.join(self.wdir, key, f"{key}.json")
try:
with open(info_path, encoding="utf-8") as fobj:
return ProcessInfo.from_dict(json.load(fobj))
except FileNotFoundError:
raise KeyError
@reraise(FileNotFoundError, KeyError)
def __setitem__(self, key: str, value: "ProcessInfo"):
info_path = os.path.join(self.wdir, key, f"{key}.json")
with open(info_path, "w", encoding="utf-8") as fobj:
return json.dump(value.asdict(), fobj)
def __delitem__(self, key: str) -> None:
from dvc.utils.fs import remove
path = os.path.join(self.wdir, key)
if os.path.exists(path):
remove(path)
def get(self, key: str, default=None):
try:
return self[key]
except KeyError:
return default
def processes(self) -> Generator[Tuple[str, "ProcessInfo"], None, None]:
for name in self:
try:
yield name, self[name]
except KeyError:
continue
def spawn(self, args: Union[str, List[str]], name: Optional[str] = None):
"""Run the given command in the background."""
name = name or uuid()
pid = ManagedProcess.spawn(
args,
wdir=os.path.join(self.wdir, name),
name=name,
)
logger.debug(
"Spawned managed process '%s' (PID: '%d')",
name,
pid,
)
def send_signal(self, name: str, sig: int):
"""Send `signal` to the specified named process."""
process_info = self[name]
if sys.platform == "win32":
if sig not in (
signal.SIGTERM,
signal.CTRL_C_EVENT,
signal.CTRL_BREAK_EVENT,
):
raise UnsupportedSignalError(sig)
def handle_closed_process():
logging.warning(
f"Process {name} had already aborted unexpectedly."
)
process_info.returncode = -1
self[name] = process_info
if process_info.returncode is None:
try:
os.kill(process_info.pid, sig)
except ProcessLookupError:
handle_closed_process()
raise
except OSError as exc:
if sys.platform == "win32":
if exc.winerror == 87:
handle_closed_process()
raise ProcessLookupError from exc
raise
def terminate(self, name: str):
"""Terminate the specified named process."""
self.send_signal(name, signal.SIGTERM)
def kill(self, name: str):
"""Kill the specified named process."""
if sys.platform == "win32":
self.send_signal(name, signal.SIGTERM)
else:
self.send_signal(name, signal.SIGKILL)
def remove(self, name: str, force: bool = False):
"""Remove the specified named process from this manager.
If the specified process is still running, it will be forcefully killed
if `force` is True`, otherwise an exception will be raised.
Raises:
ProcessNotTerminatedError if the specified process is still
running and was not forcefully killed.
"""
try:
process_info = self[name]
except KeyError:
return
if process_info.returncode is None and not force:
raise ProcessNotTerminatedError(name)
try:
self.kill(name)
except ProcessLookupError:
pass
del self[name]
def cleanup(self, force: bool = False):
"""Remove stale (terminated) processes from this manager."""
for name in self:
try:
self.remove(name, force)
except ProcessNotTerminatedError:
continue
+180
View File
@@ -0,0 +1,180 @@
import json
import logging
import os
import shlex
import subprocess
from contextlib import AbstractContextManager
from dataclasses import asdict, dataclass
from typing import List, Optional, TextIO, Union
from funcy import cached_property
from shortuuid import uuid
from dvc.utils.fs import makedirs
from .exceptions import TimeoutExpired
logger = logging.getLogger(__name__)
@dataclass
class ProcessInfo:
pid: int
stdin: Optional[str]
stdout: Optional[str]
stderr: Optional[str]
returncode: Optional[int]
@classmethod
def from_dict(cls, d):
return cls(**d)
def asdict(self):
return asdict(self)
class ManagedProcess(AbstractContextManager):
"""Run the specified command with redirected output.
stdout and stderr will both be redirected to <name>.out.
Interactive processes (requiring stdin input) are currently unsupported.
Parameters:
args: Command to be run.
wdir: If specified, redirected output files will be placed in `wdir`.
name: Name to use for this process, if not specified a UUID will be
generated instead.
"""
def __init__(
self,
args: Union[str, List[str]],
wdir: Optional[str] = None,
name: Optional[str] = None,
):
self.args: List[str] = (
shlex.split(args, posix=os.name == "posix")
if isinstance(args, str)
else list(args)
)
self.wdir = wdir
self.name = name or uuid()
self.returncode: Optional[int] = None
self._stdout: Optional[TextIO] = None
self._stderr: Optional[TextIO] = None
self._run()
def __exit__(self, exc_type, exc_value, traceback):
self.wait()
def _close_fds(self):
if self._stdout:
self._stdout.close()
self._stdout = None
if self._stderr:
self._stderr.close()
self._stderr = None
def _make_path(self, path: str) -> str:
return os.path.join(self.wdir, path) if self.wdir else path
@cached_property
def stdout_path(self) -> str:
return self._make_path(f"{self.name}.out")
@cached_property
def info_path(self) -> str:
return self._make_path(f"{self.name}.json")
@cached_property
def pidfile_path(self) -> str:
return self._make_path(f"{self.name}.pid")
@property
def info(self) -> "ProcessInfo":
return ProcessInfo(
pid=self.pid,
stdin=None,
stdout=self.stdout_path,
stderr=None,
returncode=self.returncode,
)
def _make_wdir(self):
if self.wdir:
makedirs(self.wdir, exist_ok=True)
def _dump(self):
self._make_wdir()
with open(self.info_path, "w", encoding="utf-8") as fobj:
json.dump(self.info.asdict(), fobj)
with open(self.pidfile_path, "w", encoding="utf-8") as fobj:
fobj.write(str(self.pid))
def _run(self):
self._make_wdir()
logger.debug(
"Appending output to '%s'",
self.stdout_path,
)
self._stdout = open(self.stdout_path, "ab")
try:
self._proc = subprocess.Popen(
self.args,
stdin=subprocess.DEVNULL,
stdout=self._stdout,
stderr=subprocess.STDOUT,
close_fds=True,
shell=False,
)
self.pid: int = self._proc.pid
self._dump()
except Exception:
if self._proc is not None:
self._proc.kill()
self._close_fds()
raise
def wait(self, timeout: Optional[int] = None) -> Optional[int]:
"""Block until a process started with `run` has completed.
Raises:
TimeoutExpired if `timeout` was set and the process
did not terminate after `timeout` seconds.
"""
if self.returncode is not None:
return self.returncode
try:
self._proc.wait(timeout=timeout)
except subprocess.TimeoutExpired as exc:
raise TimeoutExpired(exc.cmd, exc.timeout) from exc
self.returncode = self._proc.returncode
self._close_fds()
self._dump()
return self.returncode
@classmethod
def spawn(cls, *args, **kwargs) -> Optional[int]:
"""Spawn a ManagedProcess command in the background.
Returns: The spawned process PID.
"""
import multiprocessing as mp
proc = mp.Process(
target=cls._spawn,
args=args,
kwargs=kwargs,
daemon=True,
)
proc.start()
# Do not terminate the child daemon when the main process exits
# pylint: disable=protected-access
mp.process._children.discard(proc) # type: ignore[attr-defined]
return proc.pid
@classmethod
def _spawn(cls, *args, **kwargs):
with cls(*args, **kwargs):
pass
+7 -13
View File
@@ -136,8 +136,8 @@ class Tqdm(tqdm):
return wrapped
def as_callback(self, fs, path_info):
return FsspecCallback(fs, path_info, self)
def as_callback(self):
return FsspecCallback(self)
def close(self):
self.postfix["info"] = ""
@@ -167,21 +167,15 @@ class Tqdm(tqdm):
class FsspecCallback(fsspec.Callback):
def __init__(self, fs, path_info, progress_bar):
self.fs = fs
self.path_info = path_info
def __init__(self, progress_bar):
self.progress_bar = progress_bar
super().__init__()
def set_size(self, size):
"""``set_size()`` is an API that might be called with ``None`` if the
information is not already present on the caller. In that case, we'll
retrieve the size from an ``info()`` call."""
if size is None:
size = self.fs.info(self.path_info)["size"]
self.progress_bar.total = size
self.progress_bar.refresh()
super().set_size(size)
if size is not None:
self.progress_bar.total = size
self.progress_bar.refresh()
super().set_size(size)
def relative_update(self, inc=1):
self.progress_bar.update(inc)
+3 -32
View File
@@ -1,33 +1,4 @@
import logging
from typing import TYPE_CHECKING, Dict
from .image import ImageRenderer
from .vega import VegaRenderer
if TYPE_CHECKING:
from dvc.types import StrPath
logger = logging.getLogger(__name__)
class Renderer:
def __init__(self, data: Dict):
self.data = data
from dvc.render.utils import get_files
files = get_files(self.data)
# we assume comparison of same file between revisions for now
assert len(files) == 1
self.filename = files.pop()
def _convert(self, path: "StrPath"):
raise NotImplementedError
@property
def DIV(self):
raise NotImplementedError
def generate_html(self, path: "StrPath"):
"""this method might edit content of path"""
partial = self._convert(path)
div_id = f"plot_{self.filename.replace('.', '_').replace('/', '_')}"
return self.DIV.format(id=div_id, partial=partial)
RENDERERS = [ImageRenderer, VegaRenderer]
+61
View File
@@ -0,0 +1,61 @@
import abc
from typing import TYPE_CHECKING, Dict
from dvc.exceptions import DvcException
if TYPE_CHECKING:
from dvc.types import StrPath
REVISION_FIELD = "rev"
INDEX_FIELD = "step"
class BadTemplateError(DvcException):
pass
class Renderer(abc.ABC):
def __init__(self, data: Dict, templates=None):
self.data = data
self.templates = templates
from dvc.render.utils import get_files
files = get_files(self.data)
# we assume comparison of same file between revisions for now
assert len(files) == 1
self.filename = files.pop()
def _convert(self, path: "StrPath"):
raise NotImplementedError
@property
@abc.abstractmethod
def DIV(self):
raise NotImplementedError
@property
@abc.abstractmethod
def SCRIPTS(self):
raise NotImplementedError
@abc.abstractmethod
def as_json(self):
raise NotImplementedError
@staticmethod
def _remove_special_chars(string: str):
return string.translate(
{ord(c): "_" for c in r"!@#$%^&*()[]{};,<>?\/:.|`~=_+"}
)
def generate_html(self, path: "StrPath"):
"""this method might edit content of path"""
partial = self._convert(path)
div_id = self._remove_special_chars(self.filename)
div_id = f"plot_{div_id}"
return self.DIV.format(id=div_id, partial=partial)
+18 -11
View File
@@ -5,7 +5,7 @@ from typing import TYPE_CHECKING, Dict, List, Optional
from dvc.exceptions import DvcException
if TYPE_CHECKING:
from dvc.render import Renderer
from dvc.render.base import Renderer
from dvc.types import StrPath
PAGE_HTML = """<!DOCTYPE html>
@@ -13,9 +13,7 @@ PAGE_HTML = """<!DOCTYPE html>
<head>
{refresh_tag}
<title>DVC Plot</title>
<script src="https://cdn.jsdelivr.net/npm/[email protected]"></script>
<script src="https://cdn.jsdelivr.net/npm/[email protected]"></script>
<script src="https://cdn.jsdelivr.net/npm/[email protected]"></script>
{scripts}
</head>
<body>
{plot_divs}
@@ -29,8 +27,9 @@ class MissingPlaceholderError(DvcException):
class HTML:
PLACEHOLDER = "plot_divs"
PLACEHOLDER_FORMAT_STR = f"{{{PLACEHOLDER}}}"
SCRIPTS_PLACEHOLDER = "scripts"
PLOTS_PLACEHOLDER = "plot_divs"
PLOTS_PLACEHOLDER_FORMAT_STR = f"{{{PLOTS_PLACEHOLDER}}}"
REFRESH_PLACEHOLDER = "refresh_tag"
REFRESH_TAG = '<meta http-equiv="refresh" content="{}">'
@@ -40,11 +39,12 @@ class HTML:
refresh_seconds: Optional[int] = None,
):
template = template or PAGE_HTML
if self.PLACEHOLDER_FORMAT_STR not in template:
raise MissingPlaceholderError(self.PLACEHOLDER_FORMAT_STR)
if self.PLOTS_PLACEHOLDER_FORMAT_STR not in template:
raise MissingPlaceholderError(self.PLOTS_PLACEHOLDER_FORMAT_STR)
self.template = template
self.elements: List[str] = []
self.scripts: str = ""
self.refresh_tag = ""
if refresh_seconds is not None:
self.refresh_tag = self.REFRESH_TAG.format(refresh_seconds)
@@ -65,13 +65,19 @@ class HTML:
self.elements.append(tabulate.tabulate(rows, header, tablefmt="html"))
return self
def with_scripts(self, scripts: str) -> "HTML":
if scripts not in self.scripts:
self.scripts += f"\n{scripts}"
return self
def with_element(self, html: str) -> "HTML":
self.elements.append(html)
return self
def embed(self) -> str:
kwargs = {
self.PLACEHOLDER: "\n".join(self.elements),
self.SCRIPTS_PLACEHOLDER: self.scripts,
self.PLOTS_PLACEHOLDER: "\n".join(self.elements),
self.REFRESH_PLACEHOLDER: self.refresh_tag,
}
return self.template.format(**kwargs)
@@ -89,7 +95,7 @@ def write(
page_html = None
if template_path:
with open(template_path) as fobj:
with open(template_path, encoding="utf-8") as fobj:
page_html = fobj.read()
document = HTML(page_html, refresh_seconds=refresh_seconds)
@@ -98,10 +104,11 @@ def write(
document.with_element("<br>")
for renderer in renderers:
document.with_scripts(renderer.SCRIPTS)
document.with_element(renderer.generate_html(path))
index = Path(os.path.join(path, "index.html"))
with open(index, "w") as fd:
with open(index, "w", encoding="utf-8") as fd:
fd.write(document.embed())
return index
+12 -5
View File
@@ -1,7 +1,7 @@
import os
from typing import TYPE_CHECKING
from dvc.render import Renderer
from dvc.render.base import Renderer
from dvc.render.utils import get_files
from dvc.utils import relpath
@@ -13,10 +13,13 @@ class ImageRenderer(Renderer):
DIV = """
<div
id="{id}"
style="border: 1px solid;">
style="border:1px solid black;text-align:center;
white-space: nowrap;overflow-y:hidden;">
{partial}
</div>"""
SCRIPTS = ""
def _write_image(
self,
page_dir_path: "StrPath",
@@ -30,15 +33,16 @@ class ImageRenderer(Renderer):
img_path = os.path.join(
static, f"{revision}_{filename.replace(os.sep, '_')}"
)
rel_img_path = relpath(img_path, page_dir_path)
with open(img_path, "wb") as fd:
fd.write(image_data)
return """
<div>
<div
style="border:1px dotted black;margin:2px;display: inline-block;
overflow:hidden;margin-left:8px;">
<p>{title}</p>
<img src="{src}">
</div>""".format(
title=revision, src=rel_img_path
title=revision, src=(relpath(img_path, page_dir_path))
)
def _convert(self, path: "StrPath"):
@@ -57,6 +61,9 @@ class ImageRenderer(Renderer):
return "\n".join(div_content)
return ""
def as_json(self):
raise NotImplementedError
@staticmethod
def matches(data):
files = get_files(data)
+6 -8
View File
@@ -1,7 +1,7 @@
import os.path
from typing import Dict, List
import dpath
import dpath.util
def get_files(data: Dict) -> List:
@@ -26,20 +26,18 @@ def find_vega(repo, plots_data, target):
from dvc.render.vega import VegaRenderer
if found and VegaRenderer.matches(found):
return VegaRenderer(found, repo.plots.templates).get_vega()
return VegaRenderer(found, repo.plots.templates).as_json()
return ""
def match_renderers(plots_data, templates):
from dvc.render.image import ImageRenderer
from dvc.render.vega import VegaRenderer
from dvc.render import RENDERERS
renderers = []
for g in group_by_filename(plots_data):
if VegaRenderer.matches(g):
renderers.append(VegaRenderer(g, templates))
if ImageRenderer.matches(g):
renderers.append(ImageRenderer(g))
for renderer_class in RENDERERS:
if renderer_class.matches(g):
renderers.append(renderer_class(g, templates))
return renderers
+48 -21
View File
@@ -5,30 +5,23 @@ from typing import TYPE_CHECKING, Dict, List, Optional, Union
from funcy import first
from dvc.exceptions import DvcException
from dvc.render import Renderer
from dvc.render.base import (
INDEX_FIELD,
REVISION_FIELD,
BadTemplateError,
Renderer,
)
from dvc.render.utils import get_files
if TYPE_CHECKING:
from dvc.repo.plots.template import PlotTemplates
from dvc.types import StrPath
REVISION_FIELD = "rev"
INDEX_FIELD = "step"
class PlotMetricTypeError(DvcException):
def __init__(self, file):
super().__init__(
"'{}' - file type error\n"
"Only JSON, YAML, CSV and TSV formats are supported.".format(file)
)
class PlotDataStructureError(DvcException):
def __init__(self):
super().__init__(
"Plot data extraction failed. Please see "
"https://man.dvc.org/plot for supported data formats."
"https://man.dvc.org/plots for supported data formats."
)
@@ -108,9 +101,11 @@ class VegaRenderer(Renderer):
</div>
"""
def __init__(self, data: Dict, templates: "PlotTemplates"):
super().__init__(data)
self.templates = templates
SCRIPTS = """
<script src="https://cdn.jsdelivr.net/npm/[email protected]"></script>
<script src="https://cdn.jsdelivr.net/npm/[email protected]"></script>
<script src="https://cdn.jsdelivr.net/npm/[email protected]"></script>
"""
def _squash_props(self) -> Dict:
resolved: Dict[str, str] = {}
@@ -144,10 +139,39 @@ class VegaRenderer(Renderer):
datapoints.extend(tmp)
return datapoints
def get_vega(self) -> Optional[str]:
def fill_template(self, template, datapoints, props=None):
props = props or {}
content = deepcopy(template.content)
if template.anchor_str("data") not in template.content:
anchor = template.anchor("data")
raise BadTemplateError(
f"Template '{template.name}' is not using '{anchor}' anchor"
)
if props.get("x"):
template.check_field_exists(datapoints, props.get("x"))
if props.get("y"):
template.check_field_exists(datapoints, props.get("y"))
content = template.fill_anchor(content, "data", datapoints)
props.setdefault("title", "")
props.setdefault("x_label", props.get("x"))
props.setdefault("y_label", props.get("y"))
names = ["title", "x", "y", "x_label", "y_label"]
for name in names:
value = props.get(name)
if value is not None:
content = template.fill_anchor(content, name, value)
return content
def as_json(self) -> Optional[str]:
props = self._squash_props()
template = self.templates.load(props.get("template") or "default")
template = self.templates.load(props.get("template", None))
if not props.get("x") and template.has_anchor("x"):
props["append_index"] = True
@@ -162,11 +186,14 @@ class VegaRenderer(Renderer):
props["y"] = first(
f for f in reversed(fields) if f not in skip
)
return template.render(datapoints, props=props)
filled_template = self.fill_template(template, datapoints, props)
return filled_template
return None
def _convert(self, path: "StrPath"):
return self.get_vega()
return self.as_json()
@staticmethod
def matches(data):
+83 -36
View File
@@ -11,16 +11,15 @@ from dvc.exceptions import FileMissingError
from dvc.exceptions import IsADirectoryError as DvcIsADirectoryError
from dvc.exceptions import NotDvcRepoError, OutputNotFoundError
from dvc.ignore import DvcIgnoreFilter
from dvc.path_info import PathInfo
from dvc.utils import env2bool
from dvc.utils.fs import path_isin
if TYPE_CHECKING:
from dvc.fs.base import BaseFileSystem
from dvc.fs.base import FileSystem
from dvc.objects.file import HashFile
from dvc.repo.scm_context import SCMContext
from dvc.scm import Base
logger = logging.getLogger(__name__)
@@ -91,15 +90,18 @@ class Repo:
):
assert bool(scm) == bool(rev)
from dvc.scm import SCM
from dvc.scm.base import SCMError
from dvc.scm.git import Git
from dvc.fs.git import GitFileSystem
from dvc.scm import SCM, Base, Git, SCMError
from dvc.utils.fs import makedirs
dvc_dir = None
tmp_dir = None
try:
fs = scm.get_fs(rev) if isinstance(scm, Git) and rev else None
fs = (
GitFileSystem(scm=scm, rev=rev)
if isinstance(scm, Git) and rev
else None
)
root_dir = self.find_root(root_dir, fs)
dvc_dir = os.path.join(root_dir, self.DVC_DIR)
tmp_dir = os.path.join(dvc_dir, "tmp")
@@ -113,13 +115,39 @@ class Repo:
except SCMError:
scm = SCM(os.curdir, no_scm=True)
from dvc.scm import Base
assert isinstance(scm, Base)
root_dir = scm.root_dir
return root_dir, dvc_dir, tmp_dir
def _get_database_dir(self, db_name):
# NOTE: by default, store SQLite-based remote indexes and state's
# `links` and `md5s` caches in the repository itself to avoid any
# possible state corruption in 'shared cache dir' scenario, but allow
# user to override this through config when, say, the repository is
# located on a mounted volume — see
# https://github.com/iterative/dvc/issues/4420
base_db_dir = self.config.get(db_name, {}).get("dir", None)
if not base_db_dir:
return self.tmp_dir
import hashlib
from dvc.utils.fs import makedirs
root_dir_hash = hashlib.sha224(
self.root_dir.encode("utf-8")
).hexdigest()
db_dir = os.path.join(
base_db_dir,
self.DVC_DIR,
f"{os.path.basename(self.root_dir)}-{root_dir_hash[0:7]}",
)
makedirs(db_dir, exist_ok=True)
return db_dir
def __init__(
self,
root_dir=None,
@@ -133,16 +161,16 @@ class Repo:
):
from dvc.config import Config
from dvc.data_cloud import DataCloud
from dvc.fs.git import GitFileSystem
from dvc.fs.local import LocalFileSystem
from dvc.lock import LockNoop, make_lock
from dvc.machine import MachineManager
from dvc.objects.db import ODBManager
from dvc.repo.live import Live
from dvc.repo.metrics import Metrics
from dvc.repo.params import Params
from dvc.repo.plots import Plots
from dvc.repo.stage import StageLoad
from dvc.scm import SCM
from dvc.scm import SCM, Git
from dvc.stage.cache import StageCache
from dvc.state import State, StateNoop
@@ -157,7 +185,8 @@ class Repo:
)
if scm:
self._fs = scm.get_fs(rev)
assert isinstance(scm, Git)
self._fs = GitFileSystem(scm=scm, rev=rev)
else:
self._fs = LocalFileSystem(url=self.root_dir)
@@ -183,10 +212,8 @@ class Repo:
friendly=True,
)
# NOTE: storing state and link_state in the repository itself to
# avoid any possible state corruption in 'shared cache dir'
# scenario.
self.state = State(self.root_dir, self.tmp_dir, self.dvcignore)
state_db_dir = self._get_database_dir("state")
self.state = State(self.root_dir, state_db_dir, self.dvcignore)
self.odb = ODBManager(self)
self.stage_cache = StageCache(self)
@@ -198,14 +225,6 @@ class Repo:
self.params = Params(self)
self.live = Live(self)
if self.tmp_dir and (
self.config["feature"].get("machine", False)
or env2bool("DVC_TEST")
):
self.machine = MachineManager(self)
else:
self.machine = None
self.stage_collection_error_handler: Optional[
Callable[[str, Exception], None]
] = None
@@ -237,8 +256,7 @@ class Repo:
@cached_property
def scm(self):
from dvc.scm import SCM
from dvc.scm.base import SCMError
from dvc.scm import SCM, SCMError
if self._scm:
return self._scm
@@ -253,6 +271,12 @@ class Repo:
return SCM(self.root_dir, no_scm=True)
raise
@cached_property
def scm_context(self) -> "SCMContext":
from dvc.repo.scm_context import SCMContext
return SCMContext(self.scm, self.config)
@cached_property
def dvcignore(self) -> DvcIgnoreFilter:
@@ -263,7 +287,10 @@ class Repo:
assert self.scm
if isinstance(self.fs, LocalFileSystem):
return self.scm.get_rev()
from dvc.scm import map_scm_exception
with map_scm_exception():
return self.scm.get_rev()
return self.fs.rev
@cached_property
@@ -272,12 +299,23 @@ class Repo:
return Experiments(self)
@cached_property
def machine(self):
from dvc.machine import MachineManager
if self.tmp_dir and (
self.config["feature"].get("machine", False)
or env2bool("DVC_TEST")
):
return MachineManager(self)
return None
@property
def fs(self) -> "BaseFileSystem":
def fs(self) -> "FileSystem":
return self._fs
@fs.setter
def fs(self, fs: "BaseFileSystem"):
def fs(self, fs: "FileSystem"):
self._fs = fs
# Our graph cache is no longer valid, as it was based on the previous
# fs.
@@ -326,7 +364,7 @@ class Repo:
)
def unprotect(self, target):
return self.odb.local.unprotect(PathInfo(target))
return self.odb.local.unprotect(target)
def _ignore(self):
flist = [self.config.files["local"], self.tmp_dir]
@@ -334,7 +372,8 @@ class Repo:
if path_isin(self.odb.local.cache_dir, self.root_dir):
flist += [self.odb.local.cache_dir]
self.scm.ignore_list(flist)
for file in flist:
self.scm_context.ignore(file)
def brancher(self, *args, **kwargs):
from dvc.repo.brancher import brancher
@@ -418,14 +457,18 @@ class Repo:
outs = outs or self.index.outs_graph
abs_path = os.path.abspath(path)
path_info = PathInfo(abs_path)
match = path_info.__eq__ if strict else path_info.isin_or_eq
fs_path = abs_path
def func(out):
if out.scheme == "local" and match(out.path_info):
def eq(one, two):
return one == two
match = eq if strict else out.fs.path.isin_or_eq
if out.scheme == "local" and match(fs_path, out.fs_path):
return True
if recursive and out.path_info.isin(path_info):
if recursive and out.fs.path.isin(out.fs_path, fs_path):
return True
return False
@@ -452,13 +495,17 @@ class Repo:
return RepoFileSystem(self, subrepos=self.subrepos, **self._fs_conf)
@cached_property
def index_db_dir(self):
return self._get_database_dir("index")
@contextmanager
def open_by_relpath(self, path, remote=None, mode="r", encoding=None):
"""Opens a specified resource as a file descriptor"""
from dvc.fs.repo import RepoFileSystem
fs = RepoFileSystem(self, subrepos=True)
path = PathInfo(self.root_dir) / path
path = self.fs.path.join(self.root_dir, path)
try:
with fs.open(
path, mode=mode, encoding=encoding, remote=remote
+3 -3
View File
@@ -87,8 +87,8 @@ def translate_graph_error(stages: Stages) -> Iterator[None]:
yield
except OverlappingOutputPathsError as exc:
msg = OVERLAPPING_OUTPUT_FMT.format(
out=exc.overlapping_out.path_info,
parent=exc.parent.path_info,
out=exc.overlapping_out.fs_path,
parent=exc.parent.fs_path,
parent_stage=exc.parent.stage.addressing,
)
raise OverlappingOutputPathsError(exc.parent, exc.overlapping_out, msg)
@@ -228,7 +228,7 @@ def _find_all_targets(
from dvc.dvcfile import is_dvc_file
if os.path.isdir(target) and recursive:
files = map(os.fspath, repo.dvcignore.walk_files(repo.fs, target))
files = repo.dvcignore.find(repo.fs, target)
yield from (
path
for path in files
+8 -2
View File
@@ -1,3 +1,5 @@
from functools import partial
from funcy import group_by
@@ -58,8 +60,12 @@ def brancher( # noqa: E302
try:
if revs:
for sha, names in group_by(scm.resolve_rev, revs).items():
self.fs = scm.get_fs(sha)
from dvc.fs.git import GitFileSystem
from dvc.scm import resolve_rev
rev_resolver = partial(resolve_rev, scm)
for sha, names in group_by(rev_resolver, revs).items():
self.fs = GitFileSystem(scm=scm, rev=sha)
# ignore revs that don't contain repo root
# (i.e. revs from before a subdir=True repo was init'ed)
if self.fs.exists(self.root_dir):
+27 -26
View File
@@ -2,8 +2,7 @@ import logging
import os
from typing import TYPE_CHECKING, Callable, Iterable, List, Tuple
from dvc.path_info import PathInfo
from dvc.types import DvcPath
from dvc.types import AnyPath
if TYPE_CHECKING:
from dvc.output import Output
@@ -14,7 +13,8 @@ logger = logging.getLogger(__name__)
FilterFn = Callable[["Output"], bool]
Outputs = List["Output"]
DvcPaths = List[DvcPath]
AnyPaths = List[AnyPath]
StrPaths = List[str]
def _collect_outs(
@@ -32,39 +32,40 @@ def _collect_paths(
rev: str = None,
):
from dvc.fs.repo import RepoFileSystem
from dvc.utils import relpath
path_infos = [PathInfo(os.path.abspath(target)) for target in targets]
fs_paths = [os.path.abspath(target) for target in targets]
fs = RepoFileSystem(repo)
target_infos = []
for path_info in path_infos:
target_paths = []
for fs_path in fs_paths:
if recursive and fs.isdir(path_info):
target_infos.extend(repo.dvcignore.walk_files(fs, path_info))
if recursive and fs.isdir(fs_path):
target_paths.extend(repo.dvcignore.find(fs, fs_path))
if not fs.exists(path_info):
if not fs.exists(fs_path):
rel = relpath(fs_path)
if rev == "workspace" or rev == "":
logger.warning(
"'%s' was not found in current workspace.", path_info
)
logger.warning("'%s' was not found in current workspace.", rel)
else:
logger.warning("'%s' was not found at: '%s'.", path_info, rev)
target_infos.append(path_info)
return target_infos
logger.warning("'%s' was not found at: '%s'.", rel, rev)
target_paths.append(fs_path)
return target_paths
def _filter_duplicates(
outs: Outputs, path_infos: DvcPaths
) -> Tuple[Outputs, DvcPaths]:
outs: Outputs, fs_paths: StrPaths
) -> Tuple[Outputs, StrPaths]:
res_outs: Outputs = []
res_infos = path_infos
fs_res_paths = fs_paths
for out in outs:
if out.path_info in path_infos:
if out.fs_path in fs_paths:
res_outs.append(out)
res_infos.remove(out.path_info)
# MUTATING THE SAME LIST!!
fs_res_paths.remove(out.fs_path)
return res_outs, res_infos
return res_outs, fs_res_paths
def collect(
@@ -74,15 +75,15 @@ def collect(
output_filter: FilterFn = None,
rev: str = None,
recursive: bool = False,
) -> Tuple[Outputs, DvcPaths]:
) -> Tuple[Outputs, StrPaths]:
assert targets or output_filter
outs: Outputs = _collect_outs(repo, output_filter=output_filter, deps=deps)
if not targets:
path_infos: DvcPaths = []
return outs, path_infos
fs_paths: StrPaths = []
return outs, fs_paths
target_infos = _collect_paths(repo, targets, recursive=recursive, rev=rev)
target_paths = _collect_paths(repo, targets, recursive=recursive, rev=rev)
return _filter_duplicates(outs, target_infos)
return _filter_duplicates(outs, target_paths)
+24 -18
View File
@@ -37,14 +37,14 @@ def diff(self, a_rev="HEAD", b_rev=None, targets=None):
# workspace paths/checksums if b_rev was None
continue
targets_path_infos = None
targets_paths = None
if targets is not None:
# convert targets to path_infos, and capture any missing targets
targets_path_infos, missing_targets[rev] = _targets_to_path_infos(
# convert targets to paths, and capture any missing targets
targets_paths, missing_targets[rev] = _targets_to_paths(
repo_fs, targets
)
results[rev] = _paths_checksums(self, targets_path_infos)
results[rev] = _paths_checksums(self, targets_paths)
if targets is not None:
# check for overlapping missing targets between a_rev and b_rev
@@ -133,13 +133,14 @@ def _output_paths(repo, targets):
for output in repo.index.outs:
if _exists(output):
yield_output = targets is None or any(
output.path_info.isin_or_eq(target) for target in targets
output.fs.path.isin_or_eq(output.fs_path, target)
for target in targets
)
if on_working_fs:
_, obj = ostage(
_, _, obj = ostage(
repo.odb.local,
output.path_info,
output.fs_path,
repo.odb.local.fs,
"md5",
dry_run=True,
@@ -158,19 +159,24 @@ def _output_paths(repo, targets):
if output.is_dir_checksum and (
yield_output
or any(target.isin(output.path_info) for target in targets)
or any(
output.fs.path.isin(target, output.fs_path)
for target in targets
)
):
yield from _dir_output_paths(output.path_info, obj, targets)
yield from _dir_output_paths(
output.fs, output.fs_path, obj, targets
)
def _dir_output_paths(path_info, obj, targets=None):
for key, entry_obj in obj:
fname = path_info.joinpath(*key)
def _dir_output_paths(fs, fs_path, obj, targets=None):
for key, _, oid in obj:
fname = fs.path.join(fs_path, *key)
if targets is None or any(
fname.isin_or_eq(target) for target in targets
fs.path.isin_or_eq(fname, target) for target in targets
):
# pylint: disable=no-member
yield str(fname), entry_obj.hash_info.value
yield fs.path.join(fs.path.name(fs_path), *key), oid.value
def _filter_missing(repo_fs, paths):
@@ -185,17 +191,17 @@ def _filter_missing(repo_fs, paths):
pass
def _targets_to_path_infos(repo_fs, targets):
path_infos = []
def _targets_to_paths(repo_fs, targets):
paths = []
missing = []
for target in targets:
if repo_fs.exists(target):
path_infos.append(repo_fs.metadata(target).path_info)
paths.append(repo_fs.metadata(target).fs_path)
else:
missing.append(target)
return path_infos, missing
return paths, missing
def _calculate_renamed(new, old, added, deleted):
+59 -16
View File
@@ -10,10 +10,9 @@ from typing import Dict, Iterable, Mapping, Optional
from funcy import cached_property, first
from dvc.dependency.param import MissingParamsError
from dvc.env import DVCLIVE_RESUME
from dvc.exceptions import DvcException
from dvc.path_info import PathInfo
from dvc.stage.monitor import CheckpointKilledError
from dvc.utils import relpath
from .base import (
@@ -42,7 +41,9 @@ def scm_locked(f):
# different sequences of git operations at once
@wraps(f)
def wrapper(exp, *args, **kwargs):
with exp.scm_lock:
from dvc.scm import map_scm_exception
with map_scm_exception(), exp.scm_lock:
return f(exp, *args, **kwargs)
return wrapper
@@ -89,7 +90,7 @@ class Experiments:
def __init__(self, repo):
from dvc.lock import make_lock
from dvc.scm.base import NoSCMError
from dvc.scm import NoSCMError
if repo.config["core"].get("no_scm", False):
raise NoSCMError
@@ -98,6 +99,7 @@ class Experiments:
self.scm_lock = make_lock(
os.path.join(self.repo.tmp_dir, "exp_scm_lock"),
tmp_dir=self.repo.tmp_dir,
hardlink_lock=repo.config["core"].get("hardlink_lock", False),
)
@property
@@ -116,7 +118,7 @@ class Experiments:
@cached_property
def stash(self):
from dvc.scm.git import Stash
from scmrepo.git import Stash
return Stash(self.scm, EXPS_STASH)
@@ -162,7 +164,7 @@ class Experiments:
the human-readable name in the experiment branch ref. Has no
effect of branch is specified.
"""
with self.scm.detach_head() as orig_head:
with self.scm.detach_head(client="dvc") as orig_head:
stash_head = orig_head
if baseline_rev is None:
baseline_rev = orig_head
@@ -350,19 +352,32 @@ class Experiments:
)
self.scm.add(self.args_file)
def _format_new_params_msg(self, new_params, config_path):
"""Format an error message for when new parameters are identified"""
new_param_count = len(new_params)
pluralise = "s are" if new_param_count > 1 else " is"
param_list = ", ".join(new_params)
return (
f"{new_param_count} parameter{pluralise} missing "
f"from '{config_path}': {param_list}"
)
def _update_params(self, params: dict):
"""Update experiment params files with the specified values."""
from dvc.utils.collections import merge_params
from dvc.utils.collections import NewParamsFound, merge_params
from dvc.utils.serialize import MODIFIERS
logger.debug("Using experiment params '%s'", params)
for params_fname in params:
path = PathInfo(params_fname)
suffix = path.suffix.lower()
for path in params:
suffix = self.repo.fs.path.suffix(path).lower()
modify_data = MODIFIERS[suffix]
with modify_data(path, fs=self.repo.fs) as data:
merge_params(data, params[params_fname])
try:
merge_params(data, params[path], allow_new=False)
except NewParamsFound as e:
msg = self._format_new_params_msg(e.new_params, path)
raise MissingParamsError(msg)
# Force params file changes to be staged in git
# Otherwise in certain situations the changes to params file may be
@@ -395,7 +410,9 @@ class Experiments:
self.scm.reset()
if checkpoint_resume:
resume_rev = self.scm.resolve_rev(checkpoint_resume)
from dvc.scm import resolve_rev
resume_rev = resolve_rev(self.scm, checkpoint_resume)
try:
self.check_baseline(resume_rev)
checkpoint_resume = resume_rev
@@ -458,6 +475,17 @@ class Experiments:
"\tdvc exp branch <exp> <branch>\n"
)
def _validate_new_ref(self, exp_ref: ExpRefInfo):
from .utils import check_ref_format
if not exp_ref.name:
return
check_ref_format(self.scm, exp_ref)
if self.scm.get_ref(str(exp_ref)):
raise ExperimentExistsError(exp_ref.name)
@scm_locked
def new(self, *args, checkpoint_resume: Optional[str] = None, **kwargs):
"""Create a new experiment.
@@ -470,6 +498,16 @@ class Experiments:
*args, resume_rev=checkpoint_resume, **kwargs
)
name = kwargs.get("name", None)
baseline_sha = kwargs.get("baseline_rev") or self.repo.scm.get_rev()
exp_ref = ExpRefInfo(baseline_sha=baseline_sha, name=name)
try:
self._validate_new_ref(exp_ref)
except ExperimentExistsError as err:
if not (kwargs.get("force", False) or kwargs.get("reset", False)):
raise err
return self._stash_exp(*args, **kwargs)
def _resume_checkpoint(
@@ -638,8 +676,8 @@ class Experiments:
name=item.name,
branch=item.branch,
tmp_dir=base_tmp_dir,
cache_dir=self.repo.odb.local.cache_dir,
)
executor.init_cache(self.repo, stash_rev)
executors[stash_rev] = executor
for ref in (EXEC_HEAD, EXEC_MERGE, EXEC_BASELINE):
@@ -657,6 +695,8 @@ class Experiments:
dict mapping stash revs to the successfully executed experiments
for each stash rev.
"""
from dvc.stage.monitor import CheckpointKilledError
result: Dict[str, Dict[str, str]] = defaultdict(dict)
manager = Manager()
@@ -759,6 +799,7 @@ class Experiments:
@unlocked_repo
def _workspace_repro(self) -> Mapping[str, str]:
"""Run the most recently stashed experiment in the workspace."""
from dvc.stage.monitor import CheckpointKilledError
from dvc.utils.fs import makedirs
from .executor.base import BaseExecutor
@@ -771,7 +812,7 @@ class Experiments:
# `checkout --force` here will not lose any data (popping stash commit
# will result in conflict between workspace params and stashed CLI
# params, but we always want the stashed version).
with self.scm.detach_head(entry.rev, force=True):
with self.scm.detach_head(entry.rev, force=True, client="dvc"):
rev = self.stash.pop()
self.scm.set_ref(EXEC_BASELINE, entry.baseline_rev)
if entry.branch:
@@ -844,7 +885,9 @@ class Experiments:
return self._get_baseline(rev)
def _get_baseline(self, rev):
rev = self.scm.resolve_rev(rev)
from dvc.scm import resolve_rev
rev = resolve_rev(self.scm, rev)
if rev in self.stash_revs:
entry = self.stash_revs.get(rev)
@@ -893,7 +936,7 @@ class Experiments:
from .executor.base import BaseExecutor, ExecutorInfo
result = {}
for pidfile in self.repo.fs.walk_files(
for pidfile in self.repo.fs.find(
os.path.join(self.repo.tmp_dir, self.EXEC_PID_DIR)
):
rev, _ = os.path.splitext(os.path.basename(pidfile))
+11 -5
View File
@@ -3,7 +3,6 @@ import os
from dvc.repo import locked
from dvc.repo.scm_context import scm_context
from dvc.scm.base import RevError
from dvc.utils.fs import remove
from .base import (
@@ -20,13 +19,15 @@ logger = logging.getLogger(__name__)
@locked
@scm_context
def apply(repo, rev, force=True, **kwargs):
from scmrepo.exceptions import MergeConflictError
from dvc.repo.checkout import checkout as dvc_checkout
from dvc.scm.base import MergeConflictError, SCMError
from dvc.scm import RevError, SCMError, resolve_rev
exps = repo.experiments
try:
exp_rev = repo.scm.resolve_rev(rev)
exp_rev = resolve_rev(repo.scm, rev)
exps.check_baseline(exp_rev)
except (RevError, BaselineMismatchError) as exc:
raise InvalidExpRevError(rev) from exc
@@ -45,7 +46,12 @@ def apply(repo, rev, force=True, **kwargs):
else:
workspace = None
repo.scm.merge(exp_rev, commit=False)
from scmrepo.exceptions import SCMError as _SCMError
try:
repo.scm.merge(exp_rev, commit=False)
except _SCMError as exc:
raise SCMError(str(exc))
if workspace:
try:
@@ -60,7 +66,7 @@ def apply(repo, rev, force=True, **kwargs):
repo.scm.reset(hard=True)
repo.scm.stash.pop()
raise ApplyConflictError(rev) from exc
except SCMError as exc:
except _SCMError as exc:
raise ApplyConflictError(rev) from exc
repo.scm.stash.drop()
repo.scm.reset()

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