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+3
-16
@@ -2,8 +2,8 @@
|
||||
import argparse
|
||||
import logging
|
||||
import os
|
||||
import sys
|
||||
|
||||
from dvc import __version__
|
||||
from dvc.commands import (
|
||||
add,
|
||||
cache,
|
||||
@@ -128,17 +128,6 @@ class DvcParser(argparse.ArgumentParser):
|
||||
return args
|
||||
|
||||
|
||||
class VersionAction(argparse.Action): # pragma: no cover
|
||||
# pylint: disable=too-few-public-methods
|
||||
"""Shows DVC version and exits."""
|
||||
|
||||
def __call__(self, parser, namespace, values, option_string=None):
|
||||
from dvc import __version__
|
||||
|
||||
print(__version__)
|
||||
sys.exit(0)
|
||||
|
||||
|
||||
def get_parent_parser():
|
||||
"""Create instances of a parser containing common arguments shared among
|
||||
all the commands.
|
||||
@@ -186,13 +175,11 @@ def get_main_parser():
|
||||
help="Show this help message and exit.",
|
||||
)
|
||||
|
||||
# NOTE: On some python versions action='version' prints to stderr
|
||||
# instead of stdout https://bugs.python.org/issue18920
|
||||
parser.add_argument(
|
||||
"-V",
|
||||
"--version",
|
||||
action=VersionAction,
|
||||
nargs=0,
|
||||
action="version",
|
||||
version=__version__,
|
||||
help="Show program's version.",
|
||||
)
|
||||
|
||||
|
||||
@@ -18,6 +18,7 @@ from dvc.commands.experiments import (
|
||||
queue_worker,
|
||||
remove,
|
||||
run,
|
||||
save,
|
||||
show,
|
||||
)
|
||||
|
||||
@@ -34,6 +35,7 @@ SUB_COMMANDS = [
|
||||
queue_worker,
|
||||
remove,
|
||||
run,
|
||||
save,
|
||||
show,
|
||||
]
|
||||
|
||||
|
||||
@@ -3,6 +3,7 @@ import logging
|
||||
|
||||
from dvc.cli.command import CmdBase
|
||||
from dvc.cli.utils import append_doc_link
|
||||
from dvc.ui import ui
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
@@ -16,22 +17,13 @@ class CmdExperimentsList(CmdBase):
|
||||
num=self.args.num,
|
||||
git_remote=self.args.git_remote,
|
||||
)
|
||||
tags = self.repo.scm.describe(exps)
|
||||
remained = {baseline for baseline, tag in tags.items() if tag is None}
|
||||
base = "refs/heads/"
|
||||
ref_heads = self.repo.scm.describe(remained, base=base)
|
||||
|
||||
for baseline in exps:
|
||||
name = (
|
||||
tags[baseline]
|
||||
or ref_heads[baseline][len(base) :]
|
||||
or baseline[:7]
|
||||
)
|
||||
if not name_only:
|
||||
print(f"{name}:")
|
||||
ui.write(f"{baseline}:")
|
||||
for exp_name in exps[baseline]:
|
||||
indent = "" if name_only else "\t"
|
||||
print(f"{indent}{exp_name}")
|
||||
ui.write(f"{indent}{exp_name}")
|
||||
|
||||
return 0
|
||||
|
||||
|
||||
@@ -0,0 +1,79 @@
|
||||
import argparse
|
||||
import logging
|
||||
|
||||
from dvc.cli.command import CmdBase
|
||||
from dvc.cli.utils import append_doc_link
|
||||
from dvc.exceptions import DvcException
|
||||
from dvc.ui import ui
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
class CmdExperimentsSave(CmdBase):
|
||||
def run(self):
|
||||
|
||||
try:
|
||||
ref = self.repo.experiments.save(
|
||||
name=self.args.name,
|
||||
force=self.args.force,
|
||||
include_untracked=self.args.include_untracked,
|
||||
)
|
||||
except DvcException:
|
||||
logger.exception("failed to save experiment")
|
||||
return 1
|
||||
|
||||
if self.args.json:
|
||||
ui.write_json({"ref": ref})
|
||||
else:
|
||||
name = self.repo.experiments.get_exact_name([ref])[ref]
|
||||
ui.write(f"Experiment has been saved as: {name}")
|
||||
ui.write(
|
||||
"\nTo promote an experiment to a Git branch run:\n\n"
|
||||
"\tdvc exp branch <exp> <branch>\n"
|
||||
)
|
||||
|
||||
return 0
|
||||
|
||||
|
||||
def add_parser(experiments_subparsers, parent_parser):
|
||||
EXPERIMENTS_SAVE_HELP = "Save current workspace as a dvc experiment."
|
||||
save_parser = experiments_subparsers.add_parser(
|
||||
"save",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(EXPERIMENTS_SAVE_HELP, "exp/save"),
|
||||
help=EXPERIMENTS_SAVE_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
save_parser.add_argument(
|
||||
"-f",
|
||||
"--force",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Save even if hash value for dependencies/outputs changed.",
|
||||
)
|
||||
save_parser.add_argument(
|
||||
"--json",
|
||||
"--show-json",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Show output in JSON format.",
|
||||
)
|
||||
save_parser.add_argument(
|
||||
"-n",
|
||||
"--name",
|
||||
default=None,
|
||||
help=(
|
||||
"Human-readable experiment name. If not specified, a name will "
|
||||
"be auto-generated."
|
||||
),
|
||||
metavar="<name>",
|
||||
)
|
||||
save_parser.add_argument(
|
||||
"-I",
|
||||
"--include-untracked",
|
||||
action="append",
|
||||
default=[],
|
||||
help="List of untracked paths to include in the experiment.",
|
||||
metavar="<path>",
|
||||
)
|
||||
save_parser.set_defaults(func=CmdExperimentsSave)
|
||||
@@ -5,6 +5,7 @@ from typing import TYPE_CHECKING, Iterable, Optional
|
||||
|
||||
from funcy import cached_property
|
||||
|
||||
from dvc.config import RemoteConfigError
|
||||
from dvc_data.hashfile.db import get_index
|
||||
|
||||
if TYPE_CHECKING:
|
||||
@@ -23,6 +24,14 @@ class Remote:
|
||||
|
||||
self.worktree = config.pop("worktree", False)
|
||||
self.config = config
|
||||
if self.worktree:
|
||||
version_aware = self.config.get("version_aware")
|
||||
if version_aware is False:
|
||||
raise RemoteConfigError(
|
||||
"worktree remotes require version_aware cloud"
|
||||
)
|
||||
if version_aware is None:
|
||||
self.fs.version_aware = True
|
||||
|
||||
@cached_property
|
||||
def odb(self):
|
||||
|
||||
@@ -4,6 +4,8 @@ DVC_PAGER = "DVC_PAGER"
|
||||
DVC_ROOT = "DVC_ROOT"
|
||||
DVCLIVE_RESUME = "DVCLIVE_RESUME"
|
||||
DVC_IGNORE_ISATTY = "DVC_IGNORE_ISATTY"
|
||||
DVC_EXP_BASELINE_REV = "DVC_EXP_BASELINE_REV"
|
||||
DVC_EXP_NAME = "DVC_EXP_NAME"
|
||||
DVC_EXP_GIT_REMOTE = "DVC_EXP_GIT_REMOTE"
|
||||
DVC_EXP_AUTO_PUSH = "DVC_EXP_AUTO_PUSH"
|
||||
DVC_NO_ANALYTICS = "DVC_NO_ANALYTICS"
|
||||
|
||||
@@ -90,6 +90,7 @@ def loadd_from(stage, d_list):
|
||||
remote = d.pop(Output.PARAM_REMOTE, None)
|
||||
annot = {field: d.pop(field, None) for field in ANNOTATION_FIELDS}
|
||||
files = d.pop(Output.PARAM_FILES, None)
|
||||
push = d.pop(Output.PARAM_PUSH, True)
|
||||
ret.append(
|
||||
_get(
|
||||
stage,
|
||||
@@ -103,6 +104,7 @@ def loadd_from(stage, d_list):
|
||||
remote=remote,
|
||||
**annot,
|
||||
files=files,
|
||||
push=push,
|
||||
)
|
||||
)
|
||||
return ret
|
||||
@@ -117,6 +119,7 @@ def loads_from(
|
||||
persist=False,
|
||||
checkpoint=False,
|
||||
remote=None,
|
||||
push=True,
|
||||
):
|
||||
return [
|
||||
_get(
|
||||
@@ -129,6 +132,7 @@ def loads_from(
|
||||
persist=persist,
|
||||
checkpoint=checkpoint,
|
||||
remote=remote,
|
||||
push=push,
|
||||
)
|
||||
for s in s_list
|
||||
]
|
||||
@@ -184,6 +188,7 @@ def load_from_pipeline(stage, data, typ="outs"):
|
||||
Output.PARAM_PERSIST,
|
||||
Output.PARAM_CHECKPOINT,
|
||||
Output.PARAM_REMOTE,
|
||||
Output.PARAM_PUSH,
|
||||
*ANNOTATION_FIELDS,
|
||||
],
|
||||
)
|
||||
@@ -251,6 +256,7 @@ class Output:
|
||||
PARAM_PLOT_HEADER = "header"
|
||||
PARAM_PERSIST = "persist"
|
||||
PARAM_REMOTE = "remote"
|
||||
PARAM_PUSH = "push"
|
||||
|
||||
METRIC_SCHEMA = Any(
|
||||
None,
|
||||
@@ -284,6 +290,7 @@ class Output:
|
||||
repo=None,
|
||||
fs_config=None,
|
||||
files: List[Dict[str, Any]] = None,
|
||||
push: bool = True,
|
||||
):
|
||||
self.annot = Annotation(
|
||||
desc=desc, type=type, labels=labels or [], meta=meta or {}
|
||||
@@ -338,6 +345,7 @@ class Output:
|
||||
self.plot = False if self.IS_DEPENDENCY else plot
|
||||
self.persist = persist
|
||||
self.checkpoint = checkpoint
|
||||
self.can_push = push
|
||||
|
||||
self.fs_path = self._parse_path(self.fs, fs_path)
|
||||
self.obj: Optional["HashFile"] = None
|
||||
@@ -776,6 +784,9 @@ class Output:
|
||||
if self.remote:
|
||||
ret[self.PARAM_REMOTE] = self.remote
|
||||
|
||||
if not self.can_push:
|
||||
ret[self.PARAM_PUSH] = self.can_push
|
||||
|
||||
if (
|
||||
(not self.IS_DEPENDENCY or self.stage.is_import)
|
||||
and self.hash_info.isdir
|
||||
@@ -1032,9 +1043,15 @@ class Output:
|
||||
if not self.use_cache:
|
||||
return {}
|
||||
|
||||
push: bool = kwargs.pop("push", False)
|
||||
if self.stage.is_repo_import:
|
||||
if push:
|
||||
return {}
|
||||
return self.get_used_external(**kwargs)
|
||||
|
||||
if push and not self.can_push:
|
||||
return {}
|
||||
|
||||
if not self.hash_info:
|
||||
msg = (
|
||||
"Output '{}'({}) is missing version info. "
|
||||
@@ -1180,6 +1197,34 @@ class Output:
|
||||
def is_plot(self) -> bool:
|
||||
return bool(self.plot)
|
||||
|
||||
def restore_fields(self, other: "Output"):
|
||||
"""Restore attributes that need to be preserved when serialized."""
|
||||
self.annot = other.annot
|
||||
self.remote = other.remote
|
||||
self.can_push = other.can_push
|
||||
|
||||
def merge_version_meta(self, other: "Output"):
|
||||
"""Merge version meta for files which are unchanged from other."""
|
||||
if not self.hash_info:
|
||||
return
|
||||
if self.hash_info.isdir:
|
||||
return self._merge_dir_version_meta(other)
|
||||
if self.hash_info != other.hash_info:
|
||||
return
|
||||
self.meta = other.meta
|
||||
|
||||
def _merge_dir_version_meta(self, other: "Output"):
|
||||
from dvc_data.hashfile.tree import update_meta
|
||||
|
||||
if not self.obj or not other.hash_info.isdir:
|
||||
return
|
||||
other_obj = other.obj if other.obj is not None else other.get_obj()
|
||||
assert isinstance(self.obj, Tree) and isinstance(other_obj, Tree)
|
||||
updated = update_meta(self.obj, other_obj)
|
||||
assert updated.hash_info == self.obj.hash_info
|
||||
self.obj = updated
|
||||
self.files = updated.as_list(with_meta=True)
|
||||
|
||||
|
||||
META_SCHEMA = {
|
||||
Meta.PARAM_SIZE: int,
|
||||
@@ -1209,5 +1254,6 @@ SCHEMA = {
|
||||
Output.PARAM_CACHE: bool,
|
||||
Output.PARAM_METRIC: Output.METRIC_SCHEMA,
|
||||
Output.PARAM_REMOTE: str,
|
||||
Output.PARAM_PUSH: bool,
|
||||
Output.PARAM_FILES: [DIR_FILES_SCHEMA],
|
||||
}
|
||||
|
||||
@@ -1,3 +1,4 @@
|
||||
import os
|
||||
import re
|
||||
import typing
|
||||
from collections.abc import Iterable, Mapping
|
||||
@@ -70,6 +71,16 @@ def embrace(s: str):
|
||||
return BRACE_OPEN + s + BRACE_CLOSE
|
||||
|
||||
|
||||
def escape_str(value):
|
||||
if os.name == "nt":
|
||||
from subprocess import list2cmdline
|
||||
|
||||
return list2cmdline([value])
|
||||
from shlex import quote
|
||||
|
||||
return quote(value)
|
||||
|
||||
|
||||
@singledispatch
|
||||
def to_str(obj) -> str:
|
||||
return str(obj)
|
||||
@@ -97,12 +108,12 @@ def _(obj: dict):
|
||||
result += f"--no-{k} "
|
||||
|
||||
elif isinstance(v, str):
|
||||
result += f"--{k} '{v}' "
|
||||
result += f"--{k} {escape_str(v)} "
|
||||
|
||||
elif isinstance(v, Iterable):
|
||||
for n, i in enumerate(v):
|
||||
if isinstance(i, str):
|
||||
i = f"'{i}'"
|
||||
i = escape_str(i)
|
||||
elif isinstance(i, Iterable):
|
||||
raise ParseError(
|
||||
f"Cannot interpolate nested iterable in '{k}'"
|
||||
|
||||
@@ -14,14 +14,14 @@ from dvc.render.converter.vega import VegaConverter
|
||||
|
||||
|
||||
def _get_converter(
|
||||
renderer_class, props
|
||||
renderer_class, renderer_id, props, data
|
||||
) -> Union[VegaConverter, ImageConverter]:
|
||||
from dvc_render import ImageRenderer, VegaRenderer
|
||||
|
||||
if renderer_class.TYPE == VegaRenderer.TYPE:
|
||||
return VegaConverter(props)
|
||||
return VegaConverter(renderer_id, data, props)
|
||||
if renderer_class.TYPE == ImageRenderer.TYPE:
|
||||
return ImageConverter(props)
|
||||
return ImageConverter(renderer_id, data, props)
|
||||
|
||||
raise ValueError(f"Invalid renderer class {renderer_class}")
|
||||
|
||||
|
||||
@@ -1,9 +1,19 @@
|
||||
from typing import Dict, Optional
|
||||
from typing import Any, Dict, List, Optional, Tuple
|
||||
|
||||
|
||||
class Converter:
|
||||
def __init__(self, plot_properties: Optional[Dict] = None):
|
||||
self.plot_properties = plot_properties or {}
|
||||
def __init__(
|
||||
self,
|
||||
plot_id: str,
|
||||
data: Dict[str, Any] = None,
|
||||
properties: Optional[Dict] = None,
|
||||
):
|
||||
self.plot_id = plot_id
|
||||
self.properties = properties or {}
|
||||
self.data = data or {}
|
||||
|
||||
def convert(self, data, revision: str, filename: str, **kwargs):
|
||||
def convert(self) -> Tuple[List[Tuple[str, str, Any]], Dict]:
|
||||
raise NotImplementedError
|
||||
|
||||
def flat_datapoints(self, revision: str) -> Tuple[List[Dict], Dict]:
|
||||
raise NotImplementedError
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
import base64
|
||||
import os
|
||||
from typing import TYPE_CHECKING, Dict, List, Tuple
|
||||
from typing import TYPE_CHECKING, Any, Dict, List, Tuple
|
||||
|
||||
from dvc.render import FILENAME_FIELD, REVISION_FIELD, SRC_FIELD
|
||||
|
||||
@@ -34,25 +34,33 @@ class ImageConverter(Converter):
|
||||
base64_str = base64.b64encode(image_data).decode()
|
||||
return f"data:image;base64,{base64_str}"
|
||||
|
||||
def convert(
|
||||
self, data, revision: str, filename: str, **kwargs
|
||||
) -> Tuple[List[Dict], Dict]:
|
||||
def convert(self) -> Tuple[List[Tuple[str, str, Any]], Dict]:
|
||||
datas = []
|
||||
for filename, image_data in self.data.items():
|
||||
datas.append((filename, "", image_data))
|
||||
return datas, self.properties
|
||||
|
||||
def flat_datapoints(self, revision: str) -> Tuple[List[Dict], Dict]:
|
||||
"""
|
||||
Convert the DVC Plots content to DVC Render datapoints.
|
||||
Return both generated datapoints and updated properties.
|
||||
"""
|
||||
path = self.plot_properties.get("out")
|
||||
if path:
|
||||
if not os.path.isdir(path):
|
||||
os.makedirs(path, exist_ok=True)
|
||||
src = self._write_image(
|
||||
os.path.abspath(path), revision, filename, data
|
||||
)
|
||||
else:
|
||||
src = self._encode_image(data)
|
||||
datapoint = {
|
||||
REVISION_FIELD: revision,
|
||||
FILENAME_FIELD: filename,
|
||||
SRC_FIELD: src,
|
||||
}
|
||||
return [datapoint], self.plot_properties
|
||||
path = self.properties.get("out")
|
||||
datapoints = []
|
||||
datas, properties = self.convert()
|
||||
for filename, _, image_data in datas:
|
||||
if path:
|
||||
if not os.path.isdir(path):
|
||||
os.makedirs(path, exist_ok=True)
|
||||
src = self._write_image(
|
||||
os.path.abspath(path), revision, filename, image_data
|
||||
)
|
||||
else:
|
||||
src = self._encode_image(image_data)
|
||||
datapoint = {
|
||||
REVISION_FIELD: revision,
|
||||
FILENAME_FIELD: filename,
|
||||
SRC_FIELD: src,
|
||||
}
|
||||
datapoints.append(datapoint)
|
||||
return datapoints, properties
|
||||
|
||||
+272
-265
@@ -1,90 +1,100 @@
|
||||
from copy import deepcopy
|
||||
from functools import partial
|
||||
from typing import Dict, Iterable, List, Optional, Set, Union
|
||||
from typing import Any, Dict, Iterable, List, Tuple, Union
|
||||
|
||||
from funcy import first, project
|
||||
from funcy import first, last
|
||||
|
||||
from dvc.exceptions import DvcException
|
||||
from dvc.render import (
|
||||
FILENAME_FIELD,
|
||||
INDEX_FIELD,
|
||||
REVISION_FIELD,
|
||||
VERSION_FIELD,
|
||||
)
|
||||
from dvc.render import FILENAME_FIELD, INDEX_FIELD, VERSION_FIELD
|
||||
|
||||
from . import Converter
|
||||
|
||||
|
||||
class FieldsNotFoundError(DvcException):
|
||||
def __init__(self, expected_fields, found_fields):
|
||||
expected_str = ", ".join(expected_fields)
|
||||
class FieldNotFoundError(DvcException):
|
||||
def __init__(self, expected_field, found_fields):
|
||||
found_str = ", ".join(found_fields)
|
||||
super().__init__(
|
||||
f"Could not find all provided fields ('{expected_str}') "
|
||||
f"Could not find provided field ('{expected_field}') "
|
||||
f"in data fields ('{found_str}')."
|
||||
)
|
||||
|
||||
|
||||
class PlotDataStructureError(DvcException):
|
||||
def __init__(self):
|
||||
super().__init__(
|
||||
"Plot data extraction failed. Please see "
|
||||
"https://man.dvc.org/plots for supported data formats."
|
||||
)
|
||||
def _lists(blob: Union[Dict, List]) -> Iterable[List]:
|
||||
if isinstance(blob, list):
|
||||
yield blob
|
||||
else:
|
||||
for _, value in blob.items():
|
||||
if isinstance(value, dict):
|
||||
yield from _lists(value)
|
||||
elif isinstance(value, list):
|
||||
yield value
|
||||
|
||||
|
||||
def _filter_fields(
|
||||
datapoints: List[Dict], fields: Set, **kwargs
|
||||
) -> List[Dict]:
|
||||
if not fields:
|
||||
return datapoints
|
||||
assert isinstance(fields, set)
|
||||
|
||||
new_data = []
|
||||
for data_point in datapoints:
|
||||
keys = set(data_point.keys())
|
||||
if not fields <= keys:
|
||||
raise FieldsNotFoundError(fields, keys)
|
||||
|
||||
new_data.append(project(data_point, fields))
|
||||
|
||||
return new_data
|
||||
def _file_field(*args):
|
||||
for axis_def in args:
|
||||
if axis_def is not None:
|
||||
for file, val in axis_def.items():
|
||||
if isinstance(val, str):
|
||||
yield file, val
|
||||
elif isinstance(val, list):
|
||||
for field in val:
|
||||
yield file, field
|
||||
|
||||
|
||||
def _lists(dictionary: Dict):
|
||||
for _, value in dictionary.items():
|
||||
if isinstance(value, dict):
|
||||
yield from _lists(value)
|
||||
elif isinstance(value, list):
|
||||
yield value
|
||||
def _find(
|
||||
filename: str,
|
||||
field: str,
|
||||
data_series: List[Tuple[str, str, Any]],
|
||||
):
|
||||
for data_file, data_field, data in data_series:
|
||||
if data_file == filename and data_field == field:
|
||||
return data_file, data_field, data
|
||||
return None
|
||||
|
||||
|
||||
def _find_first_list(
|
||||
data: Union[Dict, List], fields: Set, **kwargs
|
||||
) -> List[Dict]:
|
||||
fields = fields or set()
|
||||
|
||||
if not isinstance(data, dict):
|
||||
return data
|
||||
|
||||
for lst in _lists(data):
|
||||
if (
|
||||
all(isinstance(dp, dict) for dp in lst)
|
||||
# if fields is empty, it will match any set
|
||||
and set(first(lst).keys()) & fields == fields
|
||||
):
|
||||
return lst
|
||||
|
||||
raise PlotDataStructureError()
|
||||
def _verify_field(file2datapoints: Dict[str, List], filename: str, field: str):
|
||||
if filename in file2datapoints:
|
||||
datapoint = first(file2datapoints[filename])
|
||||
if field not in datapoint:
|
||||
raise FieldNotFoundError(field, datapoint.keys())
|
||||
return
|
||||
|
||||
|
||||
def _append_index(datapoints: List[Dict], **kwargs) -> List[Dict]:
|
||||
if INDEX_FIELD in first(datapoints).keys():
|
||||
return datapoints
|
||||
def _get_xs(properties: Dict, file2datapoints: Dict[str, List[Dict]]):
|
||||
x = properties.get("x", None)
|
||||
if x is not None and isinstance(x, dict):
|
||||
for filename, field in _file_field(x):
|
||||
_verify_field(file2datapoints, filename, field)
|
||||
yield filename, field
|
||||
|
||||
for index, data_point in enumerate(datapoints):
|
||||
data_point[INDEX_FIELD] = index
|
||||
return datapoints
|
||||
|
||||
def _get_ys(properties, file2datapoints: Dict[str, List[Dict]]):
|
||||
y = properties.get("y", None)
|
||||
if y is not None:
|
||||
for filename, field in _file_field(y):
|
||||
_verify_field(file2datapoints, filename, field)
|
||||
yield filename, field
|
||||
|
||||
|
||||
def _is_datapoints(lst: List[Dict]):
|
||||
"""
|
||||
check if dict keys match, datapoints with different keys mgiht lead
|
||||
to unexpected behavior
|
||||
"""
|
||||
|
||||
return all(isinstance(item, dict) for item in lst) and set(
|
||||
first(lst).keys()
|
||||
) == {key for keys in lst for key in keys}
|
||||
|
||||
|
||||
def get_datapoints(file_content: Dict):
|
||||
result: List[Dict[str, Any]] = []
|
||||
for lst in _lists(file_content):
|
||||
if _is_datapoints(lst):
|
||||
for index, datapoint in enumerate(lst):
|
||||
if len(result) <= index:
|
||||
result.append({})
|
||||
result[index].update(datapoint)
|
||||
return result
|
||||
|
||||
|
||||
class VegaConverter(Converter):
|
||||
@@ -95,228 +105,225 @@ class VegaConverter(Converter):
|
||||
('x', 'y') it will attempt to fill in the blanks.
|
||||
"""
|
||||
|
||||
def __init__(self, plot_properties: Optional[Dict] = None):
|
||||
super().__init__(plot_properties)
|
||||
def __init__(
|
||||
self, plot_id: str, data: Dict = None, properties: Dict = None
|
||||
):
|
||||
super().__init__(plot_id, data, properties)
|
||||
self.plot_id = plot_id
|
||||
self.inferred_properties: Dict = {}
|
||||
|
||||
self.steps = []
|
||||
# TODO we should be handling that in `convert`,
|
||||
# to avoid stateful `self.inferred_properties`
|
||||
self._infer_x_y()
|
||||
|
||||
self._infer_x()
|
||||
self._infer_fields()
|
||||
def _infer_y_from_data(self):
|
||||
if self.plot_id in self.data:
|
||||
for lst in _lists(self.data[self.plot_id]):
|
||||
if all(isinstance(item, dict) for item in lst):
|
||||
datapoint = first(lst)
|
||||
field = last(datapoint.keys())
|
||||
self.inferred_properties["y"] = {self.plot_id: field}
|
||||
break
|
||||
|
||||
self.steps.append(
|
||||
(
|
||||
"find_data",
|
||||
partial(
|
||||
_find_first_list,
|
||||
fields=self.inferred_properties.get("fields", set())
|
||||
- {INDEX_FIELD},
|
||||
),
|
||||
)
|
||||
)
|
||||
def _infer_x_y(self):
|
||||
def _infer_files(from_name, to_name):
|
||||
from_value = self.properties.get(from_name, None)
|
||||
to_value = self.properties.get(to_name, None)
|
||||
|
||||
if not self.plot_properties.get("x", None):
|
||||
self.steps.append(("append_index", partial(_append_index)))
|
||||
|
||||
self.steps.append(
|
||||
(
|
||||
"filter_fields",
|
||||
partial(
|
||||
_filter_fields,
|
||||
fields=self.inferred_properties.get("fields", set()),
|
||||
),
|
||||
)
|
||||
)
|
||||
self.steps.append(
|
||||
(
|
||||
"infer_y",
|
||||
partial(
|
||||
self._infer_y,
|
||||
),
|
||||
)
|
||||
)
|
||||
|
||||
self.steps.append(
|
||||
(
|
||||
"generate_y",
|
||||
partial(
|
||||
self._generate_y_values,
|
||||
),
|
||||
)
|
||||
)
|
||||
|
||||
def _infer_x(self):
|
||||
if not self.plot_properties.get("x", None):
|
||||
self.inferred_properties["x"] = INDEX_FIELD
|
||||
|
||||
def skip_step(self, name: str):
|
||||
self.steps = [(_name, fn) for _name, fn in self.steps if _name != name]
|
||||
|
||||
def _infer_fields(self):
|
||||
fields = self.plot_properties.get("fields", set())
|
||||
if fields:
|
||||
fields = {
|
||||
*fields,
|
||||
self.plot_properties.get("x", None),
|
||||
self.plot_properties.get("y", None),
|
||||
self.inferred_properties.get("x", None),
|
||||
} - {None}
|
||||
self.inferred_properties["fields"] = fields
|
||||
|
||||
def _infer_y(self, datapoints: List[Dict], **kwargs):
|
||||
if "y" not in self.plot_properties:
|
||||
data_fields = list(first(datapoints))
|
||||
skip = (
|
||||
REVISION_FIELD,
|
||||
self.plot_properties.get("x", None)
|
||||
or self.inferred_properties.get("x"),
|
||||
FILENAME_FIELD,
|
||||
VERSION_FIELD,
|
||||
)
|
||||
inferred_y = first(
|
||||
f for f in reversed(data_fields) if f not in skip
|
||||
)
|
||||
if "y" in self.inferred_properties:
|
||||
previous_y = self.inferred_properties["y"]
|
||||
if previous_y != inferred_y:
|
||||
raise DvcException(
|
||||
f"Inferred y ('{inferred_y}' value does not match"
|
||||
f"previously matched one ('f{previous_y}')."
|
||||
)
|
||||
if isinstance(to_value, str):
|
||||
self.inferred_properties[to_name] = {}
|
||||
if isinstance(from_value, dict):
|
||||
for file in from_value.keys():
|
||||
self.inferred_properties[to_name][file] = to_value
|
||||
else:
|
||||
self.inferred_properties[to_name][self.plot_id] = to_value
|
||||
else:
|
||||
self.inferred_properties["y"] = inferred_y
|
||||
return datapoints
|
||||
self.inferred_properties[to_name] = to_value
|
||||
|
||||
_infer_files("y", "x")
|
||||
_infer_files("x", "y")
|
||||
|
||||
if self.inferred_properties.get("y", None) is None:
|
||||
self._infer_y_from_data()
|
||||
|
||||
def _find_datapoints(self):
|
||||
result = {}
|
||||
for file, content in self.data.items():
|
||||
result[file] = get_datapoints(content)
|
||||
|
||||
return result
|
||||
|
||||
@staticmethod
|
||||
def infer_y_label(properties):
|
||||
y_label = properties.get("y_label", None)
|
||||
if y_label is None:
|
||||
y = properties.get("y", None)
|
||||
if isinstance(y, dict):
|
||||
fields = {field for _, field in _file_field(y)}
|
||||
if len(fields) == 1:
|
||||
y_label = first(fields)
|
||||
else:
|
||||
y_label = "y"
|
||||
elif isinstance(y, list):
|
||||
y_label = "y"
|
||||
elif isinstance(y, str):
|
||||
y_label = y
|
||||
|
||||
return y_label
|
||||
|
||||
@staticmethod
|
||||
def infer_x_label(properties):
|
||||
x_label = properties.get("x_label", None)
|
||||
if x_label is None:
|
||||
x = properties.get("x", None)
|
||||
if isinstance(x, dict):
|
||||
fields = {field for _, field in _file_field(x)}
|
||||
if len(fields) == 1:
|
||||
x_label = first(fields)
|
||||
else:
|
||||
x_label = "x"
|
||||
else:
|
||||
x_label = INDEX_FIELD
|
||||
return x_label
|
||||
|
||||
def flat_datapoints(self, revision):
|
||||
|
||||
file2datapoints, properties = self.convert()
|
||||
|
||||
props_update = {}
|
||||
|
||||
xs = list(_get_xs(properties, file2datapoints))
|
||||
|
||||
# assign "step" if no x provided
|
||||
if not xs:
|
||||
x_file, x_field = (
|
||||
None,
|
||||
INDEX_FIELD,
|
||||
)
|
||||
else:
|
||||
x_file, x_field = xs[0]
|
||||
props_update["x"] = x_field
|
||||
|
||||
ys = list(_get_ys(properties, file2datapoints))
|
||||
|
||||
num_xs = len(xs)
|
||||
num_ys = len(ys)
|
||||
if num_xs > 1 and num_xs != num_ys:
|
||||
raise DvcException(
|
||||
f"Cannot have different number of x and y data sources. Found "
|
||||
f"{num_xs} x and {num_ys} y data sources."
|
||||
)
|
||||
|
||||
all_datapoints = []
|
||||
all_y_fields = {y_field for _, y_field in ys}
|
||||
|
||||
# override to unified y field name if there are different y fields
|
||||
if len(all_y_fields) > 1:
|
||||
props_update["y"] = "dvc_inferred_y_value"
|
||||
else:
|
||||
props_update["y"] = first(all_y_fields)
|
||||
|
||||
for i, (y_file, y_field) in enumerate(ys):
|
||||
if num_xs > 1:
|
||||
x_file, x_field = xs[i]
|
||||
datapoints = deepcopy(file2datapoints.get(y_file, []))
|
||||
|
||||
if props_update.get("y", None) == "dvc_inferred_y_value":
|
||||
_update_from_field(
|
||||
datapoints,
|
||||
field="dvc_inferred_y_value",
|
||||
source_field=y_field,
|
||||
)
|
||||
|
||||
if x_field == INDEX_FIELD and x_file is None:
|
||||
_update_from_index(datapoints, INDEX_FIELD)
|
||||
else:
|
||||
x_datapoints = file2datapoints.get(x_file, [])
|
||||
try:
|
||||
_update_from_field(
|
||||
datapoints,
|
||||
field=x_field,
|
||||
source_datapoints=x_datapoints,
|
||||
)
|
||||
except IndexError:
|
||||
raise DvcException(
|
||||
f"Cannot join '{x_field}' from '{x_file}' and "
|
||||
f"'{y_field}' from '{y_file}'. "
|
||||
"They have to have same length."
|
||||
)
|
||||
|
||||
_update_all(
|
||||
datapoints,
|
||||
update_dict={
|
||||
VERSION_FIELD: {
|
||||
"revision": revision,
|
||||
FILENAME_FIELD: y_file,
|
||||
"field": y_field,
|
||||
}
|
||||
},
|
||||
)
|
||||
|
||||
all_datapoints.extend(datapoints)
|
||||
|
||||
if not all_datapoints:
|
||||
return [], {}
|
||||
|
||||
properties = {**properties, **props_update}
|
||||
|
||||
return all_datapoints, properties
|
||||
|
||||
def convert(
|
||||
self,
|
||||
data,
|
||||
revision: str,
|
||||
filename: str,
|
||||
skip: List = None,
|
||||
**kwargs,
|
||||
):
|
||||
"""
|
||||
Convert the data. Fill necessary fields ('x', 'y') and return both
|
||||
generated datapoints and updated properties.
|
||||
generated datapoints and updated properties. If `x` is not provided,
|
||||
leave it as None, fronteds should handle it.
|
||||
|
||||
NOTE: Studio uses this method.
|
||||
The only thing studio FE handles is filling `x` and `y`.
|
||||
`x/y_label` should be filled here.
|
||||
|
||||
Datapoints are not stripped according to config, because users
|
||||
might be utilizing other fields in their custom plots.
|
||||
"""
|
||||
if not skip:
|
||||
skip = []
|
||||
datapoints = self._find_datapoints()
|
||||
properties = {**self.properties, **self.inferred_properties}
|
||||
|
||||
processed = deepcopy(data)
|
||||
properties["y_label"] = self.infer_y_label(properties)
|
||||
properties["x_label"] = self.infer_x_label(properties)
|
||||
|
||||
for step_name, step in self.steps:
|
||||
if step_name not in skip:
|
||||
processed = step( # type: ignore
|
||||
processed,
|
||||
revision=revision,
|
||||
filename=filename,
|
||||
)
|
||||
return datapoints, properties
|
||||
|
||||
return processed, {**self.plot_properties, **self.inferred_properties}
|
||||
|
||||
def _generate_y_values( # noqa: C901
|
||||
self,
|
||||
datapoints: List[Dict],
|
||||
revision: str,
|
||||
filename: str,
|
||||
**kwargs,
|
||||
) -> List[Dict]:
|
||||
def _update_from_field(
|
||||
target_datapoints: List[Dict],
|
||||
field: str,
|
||||
source_datapoints: List[Dict] = None,
|
||||
source_field: str = None,
|
||||
):
|
||||
if source_datapoints is None:
|
||||
source_datapoints = target_datapoints
|
||||
if source_field is None:
|
||||
source_field = field
|
||||
|
||||
y_values = self.plot_properties.get(
|
||||
"y", None
|
||||
) or self.inferred_properties.get("y", None)
|
||||
if len(source_datapoints) != len(target_datapoints):
|
||||
raise IndexError(
|
||||
"Source and target datapoints must have the same length"
|
||||
)
|
||||
|
||||
assert y_values is not None
|
||||
for index, datapoint in enumerate(target_datapoints):
|
||||
source_datapoint = source_datapoints[index]
|
||||
if source_field in source_datapoint:
|
||||
datapoint[field] = source_datapoint[source_field]
|
||||
|
||||
result = []
|
||||
properties_update = {}
|
||||
|
||||
def _add_version_info(datapoint, version_info):
|
||||
tmp = datapoint.copy()
|
||||
tmp[VERSION_FIELD] = version_info
|
||||
return tmp
|
||||
def _update_from_index(datapoints: List[Dict], new_field: str):
|
||||
for index, datapoint in enumerate(datapoints):
|
||||
datapoint[new_field] = index
|
||||
|
||||
def _version_info(revision, filename=None, field=None):
|
||||
res = {"revision": revision}
|
||||
if filename is not None:
|
||||
res["filename"] = filename
|
||||
if field is not None:
|
||||
res["field"] = field
|
||||
return res
|
||||
|
||||
def _generate_y(datapoint, field):
|
||||
tmp = datapoint.copy()
|
||||
tmp["dvc_inferred_y_value"] = datapoint[field]
|
||||
tmp = _add_version_info(
|
||||
tmp, _version_info(revision, filename, field)
|
||||
)
|
||||
if (
|
||||
"y_label" not in properties_update
|
||||
and "y_label" not in self.plot_properties
|
||||
):
|
||||
properties_update["y_label"] = "y"
|
||||
def _update_all(datapoints: List[Dict], update_dict: Dict):
|
||||
|
||||
properties_update["y"] = "dvc_inferred_y_value"
|
||||
|
||||
return tmp
|
||||
|
||||
if isinstance(y_values, str):
|
||||
for datapoint in datapoints:
|
||||
result.append(
|
||||
_add_version_info(
|
||||
datapoint, _version_info(revision, filename, y_values)
|
||||
)
|
||||
)
|
||||
|
||||
if isinstance(y_values, list):
|
||||
for datapoint in datapoints:
|
||||
for y_val in y_values:
|
||||
if y_val in datapoint:
|
||||
result.append(_generate_y(datapoint, y_val))
|
||||
|
||||
if isinstance(y_values, dict):
|
||||
|
||||
def _to_set(values: Iterable):
|
||||
result = set()
|
||||
for val in values:
|
||||
if isinstance(val, list):
|
||||
for elem in val:
|
||||
result.add(elem)
|
||||
else:
|
||||
result.add(val)
|
||||
|
||||
return result
|
||||
|
||||
all_fields = _to_set(y_values.values())
|
||||
if (
|
||||
all([isinstance(field, str) for field in all_fields])
|
||||
and len(all_fields) == 1
|
||||
):
|
||||
# if we use the same field from all files,
|
||||
# we dont have to generate it
|
||||
y_field = all_fields.pop()
|
||||
for datapoint in datapoints:
|
||||
result.append(
|
||||
_add_version_info(
|
||||
datapoint,
|
||||
_version_info(revision, filename, y_field),
|
||||
)
|
||||
)
|
||||
properties_update.update({"y": y_field})
|
||||
else:
|
||||
for def_filename, val in y_values.items():
|
||||
if isinstance(val, str):
|
||||
fields = [val]
|
||||
if isinstance(val, list):
|
||||
fields = val
|
||||
for datapoint in datapoints:
|
||||
for field in fields:
|
||||
if field in datapoint and def_filename in filename:
|
||||
result.append(_generate_y(datapoint, field))
|
||||
|
||||
self.inferred_properties = {
|
||||
**self.inferred_properties,
|
||||
**properties_update,
|
||||
}
|
||||
|
||||
return result
|
||||
for datapoint in datapoints:
|
||||
datapoint.update(update_dict)
|
||||
|
||||
+9
-10
@@ -42,7 +42,7 @@ class PlotsData:
|
||||
return dict(groups)
|
||||
|
||||
def get_definition_data(self, target_files, rev):
|
||||
result = []
|
||||
result = {}
|
||||
for file in target_files:
|
||||
file_content = (
|
||||
self.data.get(rev, {})
|
||||
@@ -52,7 +52,7 @@ class PlotsData:
|
||||
.get("data", {})
|
||||
)
|
||||
if file_content:
|
||||
result.append((file, file_content))
|
||||
result[file] = file_content
|
||||
|
||||
return result
|
||||
|
||||
@@ -91,15 +91,14 @@ def match_defs_renderers(
|
||||
renderer_cls = VegaRenderer
|
||||
renderer_id = plot_id
|
||||
|
||||
converter = _get_converter(renderer_cls, props)
|
||||
converter = _get_converter(
|
||||
renderer_cls, inner_id, props, definitions_data
|
||||
)
|
||||
|
||||
for filename, plot_data in definitions_data:
|
||||
dps, final_props = converter.convert(
|
||||
revision=rev,
|
||||
filename=filename,
|
||||
data=plot_data,
|
||||
)
|
||||
plot_datapoints.extend(dps)
|
||||
dps, rev_props = converter.flat_datapoints(rev)
|
||||
if not final_props and rev_props:
|
||||
final_props = rev_props
|
||||
plot_datapoints.extend(dps)
|
||||
|
||||
if "title" not in final_props:
|
||||
final_props["title"] = renderer_id
|
||||
|
||||
@@ -401,6 +401,7 @@ class Repo:
|
||||
used_run_cache=None,
|
||||
revs=None,
|
||||
num=1,
|
||||
push: bool = False,
|
||||
):
|
||||
"""Get the stages related to the given target and collect
|
||||
the `info` of its outputs.
|
||||
@@ -435,6 +436,7 @@ class Repo:
|
||||
jobs=jobs,
|
||||
recursive=recursive,
|
||||
with_deps=with_deps,
|
||||
push=push,
|
||||
).items():
|
||||
used[odb].update(objs)
|
||||
|
||||
|
||||
+1
-1
@@ -187,7 +187,7 @@ def add( # noqa: C901
|
||||
stage.transfer(source, to_remote=to_remote, odb=odb, **kwargs)
|
||||
else:
|
||||
try:
|
||||
stage.save()
|
||||
stage.save(merge_versioned=True)
|
||||
if not no_commit:
|
||||
stage.commit()
|
||||
except CacheLinkError:
|
||||
|
||||
@@ -32,7 +32,7 @@ from .refs import (
|
||||
ExpRefInfo,
|
||||
)
|
||||
from .stash import ExpStashEntry
|
||||
from .utils import exp_refs_by_rev, scm_locked, unlocked_repo
|
||||
from .utils import exp_refs_by_rev, unlocked_repo
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
@@ -50,18 +50,12 @@ class Experiments:
|
||||
)
|
||||
|
||||
def __init__(self, repo):
|
||||
from dvc.lock import make_lock
|
||||
from dvc.scm import NoSCMError
|
||||
|
||||
if repo.config["core"].get("no_scm", False):
|
||||
raise NoSCMError
|
||||
|
||||
self.repo = repo
|
||||
self.scm_lock = make_lock(
|
||||
os.path.join(self.repo.tmp_dir, "exp_scm_lock"),
|
||||
tmp_dir=self.repo.tmp_dir,
|
||||
hardlink_lock=repo.config["core"].get("hardlink_lock", False),
|
||||
)
|
||||
|
||||
@property
|
||||
def scm(self):
|
||||
@@ -253,7 +247,6 @@ class Experiments:
|
||||
if self.scm.get_ref(str(exp_ref)):
|
||||
raise ExperimentExistsError(exp_ref.name)
|
||||
|
||||
@scm_locked
|
||||
def new(
|
||||
self,
|
||||
queue: BaseStashQueue,
|
||||
@@ -279,7 +272,6 @@ class Experiments:
|
||||
except ExperimentExistsError as err:
|
||||
if not (kwargs.get("force", False) or kwargs.get("reset", False)):
|
||||
raise err
|
||||
|
||||
return queue.put(*args, **kwargs)
|
||||
|
||||
def _resume_checkpoint(
|
||||
@@ -487,6 +479,11 @@ class Experiments:
|
||||
|
||||
return run(self.repo, *args, **kwargs)
|
||||
|
||||
def save(self, *args, **kwargs):
|
||||
from dvc.repo.experiments.save import save
|
||||
|
||||
return save(self.repo, *args, **kwargs)
|
||||
|
||||
def gc(self, *args, **kwargs):
|
||||
from dvc.repo.experiments.gc import gc
|
||||
|
||||
|
||||
@@ -12,6 +12,7 @@ from typing import (
|
||||
Callable,
|
||||
Dict,
|
||||
Iterable,
|
||||
List,
|
||||
NamedTuple,
|
||||
Optional,
|
||||
Tuple,
|
||||
@@ -34,17 +35,7 @@ from ..exceptions import (
|
||||
ExperimentExistsError,
|
||||
UnchangedExperimentError,
|
||||
)
|
||||
from ..refs import (
|
||||
EXEC_BASELINE,
|
||||
EXEC_BRANCH,
|
||||
EXEC_CHECKPOINT,
|
||||
EXEC_HEAD,
|
||||
EXEC_MERGE,
|
||||
EXEC_NAMESPACE,
|
||||
EXPS_NAMESPACE,
|
||||
EXPS_STASH,
|
||||
ExpRefInfo,
|
||||
)
|
||||
from ..refs import EXEC_BASELINE, EXEC_BRANCH, EXEC_CHECKPOINT, ExpRefInfo
|
||||
|
||||
if TYPE_CHECKING:
|
||||
from queue import Queue
|
||||
@@ -58,10 +49,6 @@ if TYPE_CHECKING:
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
EXEC_TMP_DIR = "exps"
|
||||
EXEC_PID_DIR = "run"
|
||||
|
||||
|
||||
class ExecutorResult(NamedTuple):
|
||||
exp_hash: Optional[str]
|
||||
ref_info: Optional["ExpRefInfo"]
|
||||
@@ -172,6 +159,7 @@ class BaseExecutor(ABC):
|
||||
@abstractmethod
|
||||
def init_git(
|
||||
self,
|
||||
repo: "Repo",
|
||||
scm: "Git",
|
||||
stash_rev: str,
|
||||
entry: "ExpStashEntry",
|
||||
@@ -319,6 +307,7 @@ class BaseExecutor(ABC):
|
||||
def fetch_exps(
|
||||
self,
|
||||
dest_scm: "Git",
|
||||
refs: List[str],
|
||||
force: bool = False,
|
||||
on_diverged: Callable[[str, bool], None] = None,
|
||||
**kwargs,
|
||||
@@ -327,26 +316,19 @@ class BaseExecutor(ABC):
|
||||
|
||||
Args:
|
||||
dest_scm: Destination Git instance.
|
||||
refs: reference names to be fetched from the remotes.
|
||||
force: If True, diverged refs will be overwritten
|
||||
on_diverged: Callback in the form on_diverged(ref, is_checkpoint)
|
||||
to be called when an experiment ref has diverged.
|
||||
|
||||
Extra kwargs will be passed into the remote git client.
|
||||
"""
|
||||
from ..utils import iter_remote_refs
|
||||
|
||||
refs = []
|
||||
has_checkpoint = False
|
||||
for ref in iter_remote_refs(
|
||||
dest_scm,
|
||||
self.git_url,
|
||||
base=EXPS_NAMESPACE,
|
||||
**kwargs,
|
||||
):
|
||||
if ref == EXEC_CHECKPOINT:
|
||||
has_checkpoint = True
|
||||
elif not ref.startswith(EXEC_NAMESPACE) and ref != EXPS_STASH:
|
||||
refs.append(ref)
|
||||
if EXEC_CHECKPOINT in refs:
|
||||
refs.remove(EXEC_CHECKPOINT)
|
||||
has_checkpoint = True
|
||||
else:
|
||||
has_checkpoint = False
|
||||
|
||||
def on_diverged_ref(orig_ref: str, new_rev: str):
|
||||
if force:
|
||||
@@ -755,21 +737,12 @@ class BaseExecutor(ABC):
|
||||
dvc_logger.setLevel(level)
|
||||
|
||||
@contextmanager
|
||||
def set_exec_refs(
|
||||
self, scm: "Git", stash_rev: str, entry: "ExpStashEntry"
|
||||
):
|
||||
def set_temp_refs(self, scm: "Git", temp_dict: Dict[str, str]):
|
||||
try:
|
||||
# Executor will be initialized with an empty git repo that
|
||||
# we populate by pushing:
|
||||
# EXEC_HEAD - the base commit for this experiment
|
||||
# EXEC_MERGE - the unmerged changes (from our stash)
|
||||
# to be reproduced
|
||||
# EXEC_BASELINE - the baseline commit for this experiment
|
||||
scm.set_ref(EXEC_HEAD, entry.head_rev)
|
||||
scm.set_ref(EXEC_MERGE, stash_rev)
|
||||
scm.set_ref(EXEC_BASELINE, entry.baseline_rev)
|
||||
for ref, rev in temp_dict.items():
|
||||
scm.set_ref(ref, rev)
|
||||
yield
|
||||
finally:
|
||||
for ref in (EXEC_HEAD, EXEC_MERGE, EXEC_BASELINE):
|
||||
for ref in temp_dict:
|
||||
if scm.get_ref(ref):
|
||||
scm.remove_ref(ref)
|
||||
|
||||
@@ -2,11 +2,14 @@ import logging
|
||||
import os
|
||||
from contextlib import ExitStack
|
||||
from tempfile import mkdtemp
|
||||
from typing import TYPE_CHECKING, Optional
|
||||
from typing import TYPE_CHECKING, List, Optional
|
||||
|
||||
from funcy import cached_property
|
||||
from funcy import cached_property, retry
|
||||
from scmrepo.exceptions import SCMError as _SCMError
|
||||
from shortuuid import uuid
|
||||
|
||||
from dvc.exceptions import DvcException
|
||||
from dvc.lock import LockError
|
||||
from dvc.scm import SCM, GitMergeError
|
||||
from dvc.utils.fs import makedirs, remove
|
||||
|
||||
@@ -18,16 +21,19 @@ from ..refs import (
|
||||
EXEC_HEAD,
|
||||
EXEC_MERGE,
|
||||
EXEC_NAMESPACE,
|
||||
EXPS_TEMP,
|
||||
ExpRefInfo,
|
||||
)
|
||||
from .base import EXEC_TMP_DIR, BaseExecutor, TaskStatus
|
||||
from ..utils import EXEC_TMP_DIR, get_exp_rwlock
|
||||
from .base import BaseExecutor, ExecutorResult, TaskStatus
|
||||
|
||||
if TYPE_CHECKING:
|
||||
from scmrepo.git import Git
|
||||
|
||||
from dvc.repo import Repo
|
||||
|
||||
from ..refs import ExpRefInfo
|
||||
from ..stash import ExpStashEntry
|
||||
from .base import ExecutorInfo
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
@@ -67,8 +73,10 @@ class TempDirExecutor(BaseLocalExecutor):
|
||||
QUIET = True
|
||||
DEFAULT_LOCATION = "tempdir"
|
||||
|
||||
@retry(180, errors=LockError, timeout=1)
|
||||
def init_git(
|
||||
self,
|
||||
repo: "Repo",
|
||||
scm: "Git",
|
||||
stash_rev: str,
|
||||
entry: "ExpStashEntry",
|
||||
@@ -85,18 +93,43 @@ class TempDirExecutor(BaseLocalExecutor):
|
||||
if infofile:
|
||||
self.info.dump_json(infofile)
|
||||
|
||||
with self.set_exec_refs(scm, stash_rev, entry):
|
||||
refspec = f"{EXEC_NAMESPACE}/"
|
||||
push_refspec(scm, self.git_url, refspec, refspec)
|
||||
temp_head = f"{EXPS_TEMP}/head-{uuid()}"
|
||||
temp_merge = f"{EXPS_TEMP}/merge-{uuid()}"
|
||||
temp_baseline = f"{EXPS_TEMP}/baseline-{uuid()}"
|
||||
|
||||
if branch:
|
||||
push_refspec(scm, self.git_url, branch, branch)
|
||||
self.scm.set_ref(EXEC_BRANCH, branch, symbolic=True)
|
||||
elif self.scm.get_ref(EXEC_BRANCH):
|
||||
self.scm.remove_ref(EXEC_BRANCH)
|
||||
temp_ref_dict = {
|
||||
temp_head: entry.head_rev,
|
||||
temp_merge: stash_rev,
|
||||
temp_baseline: entry.baseline_rev,
|
||||
}
|
||||
with get_exp_rwlock(
|
||||
repo, writes=[temp_head, temp_merge, temp_baseline]
|
||||
), self.set_temp_refs(scm, temp_ref_dict):
|
||||
# Executor will be initialized with an empty git repo that
|
||||
# we populate by pushing:
|
||||
# EXEC_HEAD - the base commit for this experiment
|
||||
# EXEC_MERGE - the unmerged changes (from our stash)
|
||||
# to be reproduced
|
||||
# EXEC_BASELINE - the baseline commit for this experiment
|
||||
refspec = [
|
||||
(temp_head, EXEC_HEAD),
|
||||
(temp_merge, EXEC_MERGE),
|
||||
(temp_baseline, EXEC_BASELINE),
|
||||
]
|
||||
|
||||
if branch:
|
||||
refspec.append((branch, branch))
|
||||
with get_exp_rwlock(repo, reads=[branch]):
|
||||
push_refspec(scm, self.git_url, refspec)
|
||||
self.scm.set_ref(EXEC_BRANCH, branch, symbolic=True)
|
||||
else:
|
||||
push_refspec(scm, self.git_url, refspec)
|
||||
if self.scm.get_ref(EXEC_BRANCH):
|
||||
self.scm.remove_ref(EXEC_BRANCH)
|
||||
|
||||
if self.scm.get_ref(EXEC_CHECKPOINT):
|
||||
self.scm.remove_ref(EXEC_CHECKPOINT)
|
||||
|
||||
if self.scm.get_ref(EXEC_CHECKPOINT):
|
||||
self.scm.remove_ref(EXEC_CHECKPOINT)
|
||||
# checkout EXEC_HEAD and apply EXEC_MERGE on top of it without
|
||||
# committing
|
||||
head = EXEC_BRANCH if branch else EXEC_HEAD
|
||||
@@ -167,8 +200,10 @@ class WorkspaceExecutor(BaseLocalExecutor):
|
||||
logger.debug("Init workspace executor in '%s'", root_dir)
|
||||
return executor
|
||||
|
||||
@retry(180, errors=LockError, timeout=1)
|
||||
def init_git(
|
||||
self,
|
||||
repo: "Repo",
|
||||
scm: "Git",
|
||||
stash_rev: str,
|
||||
entry: "ExpStashEntry",
|
||||
@@ -179,25 +214,26 @@ class WorkspaceExecutor(BaseLocalExecutor):
|
||||
if infofile:
|
||||
self.info.dump_json(infofile)
|
||||
|
||||
scm.set_ref(EXEC_HEAD, entry.head_rev)
|
||||
scm.set_ref(EXEC_MERGE, stash_rev)
|
||||
scm.set_ref(EXEC_BASELINE, entry.baseline_rev)
|
||||
self._detach_stack.enter_context(
|
||||
self.scm.detach_head(
|
||||
self.scm.get_ref(EXEC_HEAD),
|
||||
force=True,
|
||||
client="dvc",
|
||||
with get_exp_rwlock(repo, writes=[EXEC_NAMESPACE]):
|
||||
scm.set_ref(EXEC_HEAD, entry.head_rev)
|
||||
scm.set_ref(EXEC_MERGE, stash_rev)
|
||||
scm.set_ref(EXEC_BASELINE, entry.baseline_rev)
|
||||
self._detach_stack.enter_context(
|
||||
self.scm.detach_head(
|
||||
self.scm.get_ref(EXEC_HEAD),
|
||||
force=True,
|
||||
client="dvc",
|
||||
)
|
||||
)
|
||||
)
|
||||
merge_rev = self.scm.get_ref(EXEC_MERGE)
|
||||
try:
|
||||
self.scm.merge(merge_rev, squash=True, commit=False)
|
||||
except _SCMError as exc:
|
||||
raise GitMergeError(str(exc), scm=self.scm)
|
||||
if branch:
|
||||
self.scm.set_ref(EXEC_BRANCH, branch, symbolic=True)
|
||||
elif scm.get_ref(EXEC_BRANCH):
|
||||
self.scm.remove_ref(EXEC_BRANCH)
|
||||
merge_rev = self.scm.get_ref(EXEC_MERGE)
|
||||
try:
|
||||
self.scm.merge(merge_rev, squash=True, commit=False)
|
||||
except _SCMError as exc:
|
||||
raise GitMergeError(str(exc), scm=self.scm)
|
||||
if branch:
|
||||
self.scm.set_ref(EXEC_BRANCH, branch, symbolic=True)
|
||||
elif scm.get_ref(EXEC_BRANCH):
|
||||
self.scm.remove_ref(EXEC_BRANCH)
|
||||
|
||||
def init_cache(self, repo: "Repo", rev: str, run_cache: bool = True):
|
||||
pass
|
||||
@@ -213,3 +249,57 @@ class WorkspaceExecutor(BaseLocalExecutor):
|
||||
checkpoint = self.scm.get_ref(EXEC_CHECKPOINT)
|
||||
if checkpoint and checkpoint != self._orig_checkpoint:
|
||||
self.scm.set_ref(EXEC_APPLY, checkpoint)
|
||||
|
||||
@classmethod
|
||||
def save(
|
||||
cls,
|
||||
info: "ExecutorInfo",
|
||||
force: bool = False,
|
||||
include_untracked: Optional[List[str]] = None,
|
||||
) -> ExecutorResult:
|
||||
from dvc.repo import Repo
|
||||
|
||||
exp_hash: Optional[str] = None
|
||||
exp_ref: Optional[ExpRefInfo] = None
|
||||
|
||||
dvc = Repo(os.path.join(info.root_dir, info.dvc_dir))
|
||||
old_cwd = os.getcwd()
|
||||
if info.wdir:
|
||||
os.chdir(os.path.join(dvc.scm.root_dir, info.wdir))
|
||||
else:
|
||||
os.chdir(dvc.root_dir)
|
||||
|
||||
try:
|
||||
stages = dvc.commit([], force=force)
|
||||
exp_hash = cls.hash_exp(stages)
|
||||
if include_untracked:
|
||||
dvc.scm.add(include_untracked)
|
||||
cls.commit(
|
||||
dvc.scm,
|
||||
exp_hash,
|
||||
exp_name=info.name,
|
||||
force=force,
|
||||
)
|
||||
ref: Optional[str] = dvc.scm.get_ref(EXEC_BRANCH, follow=False)
|
||||
exp_ref = ExpRefInfo.from_ref(ref) if ref else None
|
||||
untracked = dvc.scm.untracked_files()
|
||||
if untracked:
|
||||
logger.warning(
|
||||
"The following untracked files were present in "
|
||||
"the workspace before saving but "
|
||||
"will not be included in the experiment commit:\n"
|
||||
"\t%s",
|
||||
", ".join(untracked),
|
||||
)
|
||||
info.result_hash = exp_hash
|
||||
info.result_ref = ref
|
||||
info.result_force = False
|
||||
info.status = TaskStatus.SUCCESS
|
||||
except DvcException:
|
||||
info.status = TaskStatus.FAILED
|
||||
raise
|
||||
finally:
|
||||
dvc.close()
|
||||
os.chdir(old_cwd)
|
||||
|
||||
return ExecutorResult(ref, exp_ref, info.result_force)
|
||||
|
||||
@@ -9,6 +9,7 @@ from dvc_ssh import SSHFileSystem
|
||||
from funcy import first
|
||||
|
||||
from ..refs import (
|
||||
EXEC_BASELINE,
|
||||
EXEC_BRANCH,
|
||||
EXEC_CHECKPOINT,
|
||||
EXEC_HEAD,
|
||||
@@ -119,6 +120,7 @@ class SSHExecutor(BaseExecutor):
|
||||
|
||||
def init_git(
|
||||
self,
|
||||
repo: "Repo",
|
||||
scm: "Git",
|
||||
stash_rev: str,
|
||||
entry: "ExpStashEntry",
|
||||
@@ -147,12 +149,18 @@ class SSHExecutor(BaseExecutor):
|
||||
# (see https://github.com/iterative/dvc/issues/6508)
|
||||
kwargs = self._git_client_args(fs)
|
||||
|
||||
with self.set_exec_refs(scm, stash_rev, entry):
|
||||
refspec = f"{EXEC_NAMESPACE}/"
|
||||
push_refspec(scm, self.git_url, refspec, refspec, **kwargs)
|
||||
ref_dict = {
|
||||
EXEC_HEAD: entry.head_rev,
|
||||
EXEC_MERGE: stash_rev,
|
||||
EXEC_BASELINE: entry.baseline_rev,
|
||||
}
|
||||
with self.set_temp_refs(scm, ref_dict):
|
||||
exec_namespace = f"{EXEC_NAMESPACE}/"
|
||||
refspec = [(exec_namespace, exec_namespace)]
|
||||
push_refspec(scm, self.git_url, refspec, **kwargs)
|
||||
|
||||
if branch:
|
||||
push_refspec(scm, self.git_url, branch, branch, **kwargs)
|
||||
push_refspec(scm, self.git_url, [(branch, branch)], **kwargs)
|
||||
self._ssh_cmd(fs, f"git symbolic-ref {EXEC_BRANCH} {branch}")
|
||||
else:
|
||||
self._ssh_cmd(
|
||||
|
||||
+17
-14
@@ -6,7 +6,7 @@ from dvc.repo.scm_context import scm_context
|
||||
from dvc.scm import iter_revs
|
||||
from dvc.types import Optional
|
||||
|
||||
from .utils import exp_refs, exp_refs_by_baseline
|
||||
from .utils import exp_refs_by_baseline
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
@@ -20,19 +20,22 @@ def ls(
|
||||
num: int = 1,
|
||||
git_remote: Optional[str] = None,
|
||||
):
|
||||
results = defaultdict(list)
|
||||
if all_commits:
|
||||
gen = exp_refs(repo.scm, git_remote)
|
||||
for info in gen:
|
||||
results[info.baseline_sha].append(info.name)
|
||||
return results
|
||||
|
||||
rev = rev or "HEAD"
|
||||
|
||||
revs = iter_revs(repo.scm, [rev], num)
|
||||
rev_set = set(revs.keys())
|
||||
rev_set = None
|
||||
if not all_commits:
|
||||
revs = iter_revs(repo.scm, [rev or "HEAD"], num)
|
||||
rev_set = set(revs.keys())
|
||||
ref_info_dict = exp_refs_by_baseline(repo.scm, rev_set, git_remote)
|
||||
for rev, ref_info_list in ref_info_dict.items():
|
||||
results[rev] = [ref_info.name for ref_info in ref_info_list]
|
||||
|
||||
tags = repo.scm.describe(ref_info_dict.keys())
|
||||
remained = {baseline for baseline, tag in tags.items() if tag is None}
|
||||
base = "refs/heads"
|
||||
ref_heads = repo.scm.describe(remained, base=base)
|
||||
|
||||
results = defaultdict(list)
|
||||
for baseline in ref_info_dict:
|
||||
name = baseline[:7]
|
||||
if tags[baseline] or ref_heads[baseline]:
|
||||
name = tags[baseline] or ref_heads[baseline][len(base) + 1 :]
|
||||
results[name] = [info.name for info in ref_info_dict[baseline]]
|
||||
|
||||
return results
|
||||
|
||||
@@ -20,22 +20,18 @@ from typing import (
|
||||
from funcy import cached_property, retry
|
||||
|
||||
from dvc.dependency import ParamsDependency
|
||||
from dvc.env import DVCLIVE_RESUME
|
||||
from dvc.env import DVC_EXP_BASELINE_REV, DVC_EXP_NAME, DVCLIVE_RESUME
|
||||
from dvc.exceptions import DvcException
|
||||
from dvc.lock import LockError
|
||||
from dvc.ui import ui
|
||||
|
||||
from ..exceptions import CheckpointExistsError, ExperimentExistsError
|
||||
from ..executor.base import (
|
||||
EXEC_PID_DIR,
|
||||
EXEC_TMP_DIR,
|
||||
BaseExecutor,
|
||||
ExecutorResult,
|
||||
)
|
||||
from ..executor.base import BaseExecutor, ExecutorResult
|
||||
from ..executor.local import WorkspaceExecutor
|
||||
from ..refs import ExpRefInfo
|
||||
from ..stash import ExpStash, ExpStashEntry
|
||||
from ..utils import exp_refs_by_rev, scm_locked
|
||||
from ..utils import EXEC_PID_DIR, EXEC_TMP_DIR, exp_refs_by_rev, get_exp_rwlock
|
||||
from .utils import get_remote_executor_refs
|
||||
|
||||
if TYPE_CHECKING:
|
||||
from scmrepo.git import Git
|
||||
@@ -400,7 +396,13 @@ class BaseStashQueue(ABC):
|
||||
)
|
||||
|
||||
# save additional repro command line arguments
|
||||
run_env = {DVCLIVE_RESUME: "1"} if resume_rev else {}
|
||||
run_env = {
|
||||
DVC_EXP_BASELINE_REV: baseline_rev,
|
||||
}
|
||||
if name:
|
||||
run_env[DVC_EXP_NAME] = name
|
||||
if resume_rev:
|
||||
run_env[DVCLIVE_RESUME] = "1"
|
||||
self._pack_args(*args, run_env=run_env, **kwargs)
|
||||
|
||||
# save experiment as a stash commit
|
||||
@@ -555,28 +557,39 @@ class BaseStashQueue(ABC):
|
||||
|
||||
@staticmethod
|
||||
@retry(180, errors=LockError, timeout=1)
|
||||
@scm_locked
|
||||
def get_stash_entry(
|
||||
exp: "Experiments",
|
||||
queue_entry: QueueEntry,
|
||||
) -> "ExpStashEntry":
|
||||
stash = ExpStash(exp.scm, queue_entry.stash_ref)
|
||||
stash_rev = queue_entry.stash_rev
|
||||
with get_exp_rwlock(exp.repo, writes=[queue_entry.stash_ref]):
|
||||
stash_entry = stash.stash_revs.get(
|
||||
stash_rev,
|
||||
ExpStashEntry(None, stash_rev, stash_rev, None, None),
|
||||
)
|
||||
if stash_entry.stash_index is not None:
|
||||
stash.drop(stash_entry.stash_index)
|
||||
return stash_entry
|
||||
|
||||
@classmethod
|
||||
def init_executor(
|
||||
cls,
|
||||
exp: "Experiments",
|
||||
queue_entry: QueueEntry,
|
||||
executor_cls: Type[BaseExecutor] = WorkspaceExecutor,
|
||||
**kwargs,
|
||||
) -> BaseExecutor:
|
||||
scm = exp.scm
|
||||
stash = ExpStash(scm, queue_entry.stash_ref)
|
||||
stash_rev = queue_entry.stash_rev
|
||||
stash_entry = stash.stash_revs.get(
|
||||
stash_rev,
|
||||
ExpStashEntry(None, stash_rev, stash_rev, None, None),
|
||||
)
|
||||
if stash_entry.stash_index is not None:
|
||||
stash.drop(stash_entry.stash_index)
|
||||
stash_entry = cls.get_stash_entry(exp, queue_entry)
|
||||
|
||||
executor = executor_cls.from_stash_entry(
|
||||
exp.repo, stash_entry, **kwargs
|
||||
)
|
||||
|
||||
stash_rev = queue_entry.stash_rev
|
||||
infofile = exp.celery_queue.get_infofile_path(stash_rev)
|
||||
executor.init_git(
|
||||
exp.repo,
|
||||
exp.repo.scm,
|
||||
stash_rev,
|
||||
stash_entry,
|
||||
@@ -597,7 +610,6 @@ class BaseStashQueue(ABC):
|
||||
|
||||
@staticmethod
|
||||
@retry(180, errors=LockError, timeout=1)
|
||||
@scm_locked
|
||||
def collect_git(
|
||||
exp: "Experiments",
|
||||
executor: BaseExecutor,
|
||||
@@ -611,16 +623,20 @@ class BaseStashQueue(ABC):
|
||||
raise CheckpointExistsError(ref_info.name)
|
||||
raise ExperimentExistsError(ref_info.name)
|
||||
|
||||
for ref in executor.fetch_exps(
|
||||
exp.scm,
|
||||
force=exec_result.force,
|
||||
on_diverged=on_diverged,
|
||||
):
|
||||
exp_rev = exp.scm.get_ref(ref)
|
||||
if exp_rev:
|
||||
assert exec_result.exp_hash
|
||||
logger.debug("Collected experiment '%s'.", exp_rev[:7])
|
||||
results[exp_rev] = exec_result.exp_hash
|
||||
refs = get_remote_executor_refs(exp.scm, executor.git_url)
|
||||
|
||||
with get_exp_rwlock(exp.repo, writes=refs):
|
||||
for ref in executor.fetch_exps(
|
||||
exp.scm,
|
||||
refs,
|
||||
force=exec_result.force,
|
||||
on_diverged=on_diverged,
|
||||
):
|
||||
exp_rev = exp.scm.get_ref(ref)
|
||||
if exp_rev:
|
||||
assert exec_result.exp_hash
|
||||
logger.debug("Collected experiment '%s'.", exp_rev[:7])
|
||||
results[exp_rev] = exec_result.exp_hash
|
||||
|
||||
return results
|
||||
|
||||
|
||||
@@ -15,7 +15,7 @@ from typing import (
|
||||
)
|
||||
|
||||
from celery.result import AsyncResult
|
||||
from funcy import cached_property
|
||||
from funcy import cached_property, first
|
||||
from kombu.message import Message
|
||||
|
||||
from dvc.daemon import daemonize
|
||||
@@ -23,8 +23,11 @@ from dvc.exceptions import DvcException
|
||||
from dvc.ui import ui
|
||||
|
||||
from ..exceptions import UnresolvedQueueExpNamesError
|
||||
from ..executor.base import EXEC_TMP_DIR, ExecutorInfo, ExecutorResult
|
||||
from ..executor.base import ExecutorInfo, ExecutorResult
|
||||
from ..refs import CELERY_STASH
|
||||
from ..utils import EXEC_TMP_DIR, get_exp_rwlock
|
||||
from .base import BaseStashQueue, QueueDoneResult, QueueEntry, QueueGetResult
|
||||
from .exceptions import CannotKillTasksError
|
||||
from .tasks import run_exp
|
||||
from .utils import fetch_running_exp_from_temp_dir
|
||||
|
||||
@@ -163,7 +166,8 @@ class LocalCeleryQueue(BaseStashQueue):
|
||||
|
||||
def put(self, *args, **kwargs) -> QueueEntry:
|
||||
"""Stash an experiment and add it to the queue."""
|
||||
entry = self._stash_exp(*args, **kwargs)
|
||||
with get_exp_rwlock(self.repo, writes=["workspace", CELERY_STASH]):
|
||||
entry = self._stash_exp(*args, **kwargs)
|
||||
self.celery.signature(run_exp.s(entry.asdict())).delay()
|
||||
return entry
|
||||
|
||||
@@ -286,24 +290,70 @@ class LocalCeleryQueue(BaseStashQueue):
|
||||
# out of the active task list, and needs to be loaded here.
|
||||
return self._get_done_result(entry, timeout)
|
||||
|
||||
def _get_running_task_ids(self) -> Set[str]:
|
||||
running_task_ids: Set[str] = set()
|
||||
active_workers = self.worker_status()
|
||||
for _, tasks in active_workers.items():
|
||||
task = first(tasks)
|
||||
if task:
|
||||
running_task_ids.add(task["id"])
|
||||
return running_task_ids
|
||||
|
||||
def _try_to_kill_tasks(
|
||||
self, to_kill: Dict[QueueEntry, str]
|
||||
) -> Dict[QueueEntry, str]:
|
||||
fail_to_kill_entries: Dict[QueueEntry, str] = {}
|
||||
for queue_entry, rev in to_kill.items():
|
||||
try:
|
||||
self.proc.kill(queue_entry.stash_rev)
|
||||
logger.debug(f"Task {rev} had been killed.")
|
||||
except ProcessLookupError:
|
||||
fail_to_kill_entries[queue_entry] = rev
|
||||
return fail_to_kill_entries
|
||||
|
||||
def _mark_inactive_tasks_failure(self, remained_entries):
|
||||
remained_revs: List[str] = []
|
||||
running_ids = self._get_running_task_ids()
|
||||
logger.debug(f"Current running tasks ids: {running_ids}.")
|
||||
for msg, entry in self._iter_processed():
|
||||
if entry not in remained_entries:
|
||||
continue
|
||||
task_id = msg.headers["id"]
|
||||
if task_id in running_ids:
|
||||
remained_revs.append(remained_entries[entry])
|
||||
else:
|
||||
result: AsyncResult = AsyncResult(task_id)
|
||||
if not result.ready():
|
||||
logger.debug(
|
||||
f"Task id {task_id} rev {remained_entries[entry]} "
|
||||
"marked as failure."
|
||||
)
|
||||
self.celery.backend.mark_as_failure(task_id, None)
|
||||
|
||||
if remained_revs:
|
||||
raise CannotKillTasksError(remained_revs)
|
||||
|
||||
def kill(self, revs: Collection[str]) -> None:
|
||||
to_kill: Set[QueueEntry] = set()
|
||||
name_dict: Dict[
|
||||
str, Optional[QueueEntry]
|
||||
] = self.match_queue_entry_by_name(set(revs), self.iter_active())
|
||||
|
||||
missing_rev: List[str] = []
|
||||
to_kill: Dict[QueueEntry, str] = {}
|
||||
missing_revs: List[str] = []
|
||||
for rev, queue_entry in name_dict.items():
|
||||
if queue_entry is None:
|
||||
missing_rev.append(rev)
|
||||
missing_revs.append(rev)
|
||||
else:
|
||||
to_kill.add(queue_entry)
|
||||
to_kill[queue_entry] = rev
|
||||
if missing_revs:
|
||||
raise UnresolvedQueueExpNamesError(missing_revs)
|
||||
|
||||
if missing_rev:
|
||||
raise UnresolvedQueueExpNamesError(missing_rev)
|
||||
fail_to_kill_entries: Dict[QueueEntry, str] = self._try_to_kill_tasks(
|
||||
to_kill
|
||||
)
|
||||
|
||||
for queue_entry in to_kill:
|
||||
self.proc.kill(queue_entry.stash_rev)
|
||||
if fail_to_kill_entries:
|
||||
self._mark_inactive_tasks_failure(fail_to_kill_entries)
|
||||
|
||||
def shutdown(self, kill: bool = False):
|
||||
self.celery.control.shutdown()
|
||||
@@ -359,10 +409,11 @@ class LocalCeleryQueue(BaseStashQueue):
|
||||
) as fobj:
|
||||
ui.write(fobj.read())
|
||||
|
||||
def worker_status(self) -> Dict:
|
||||
def worker_status(self) -> Dict[str, List[Dict]]:
|
||||
"""Return the current active celery worker"""
|
||||
status = self.celery.control.inspect().active() or {}
|
||||
logger.debug(f"Worker status: {status}")
|
||||
|
||||
return status
|
||||
|
||||
def clear(self, *args, **kwargs):
|
||||
|
||||
@@ -0,0 +1,12 @@
|
||||
from typing import Collection
|
||||
|
||||
from dvc.exceptions import DvcException
|
||||
|
||||
|
||||
class CannotKillTasksError(DvcException):
|
||||
def __init__(self, revs: Collection[str]):
|
||||
rev_str = ",".join(revs)
|
||||
super().__init__(
|
||||
f"Task '{rev_str}' is initializing, please wait a few seconds "
|
||||
"until the experiments start running to retry the kill operation."
|
||||
)
|
||||
@@ -1,4 +1,4 @@
|
||||
from typing import Any, Dict
|
||||
from typing import TYPE_CHECKING, Any, Dict
|
||||
|
||||
from celery import shared_task
|
||||
from celery.utils.log import get_task_logger
|
||||
@@ -7,11 +7,15 @@ from ..executor.base import ExecutorInfo
|
||||
from ..executor.local import TempDirExecutor
|
||||
from .base import BaseStashQueue, QueueEntry
|
||||
|
||||
if TYPE_CHECKING:
|
||||
from ..executor.base import BaseExecutor
|
||||
|
||||
|
||||
logger = get_task_logger(__name__)
|
||||
|
||||
|
||||
@shared_task
|
||||
def setup_exp(entry_dict: Dict[str, Any]) -> TempDirExecutor:
|
||||
def setup_exp(entry_dict: Dict[str, Any]) -> "BaseExecutor":
|
||||
"""Setup an experiment.
|
||||
|
||||
Arguments:
|
||||
|
||||
@@ -6,14 +6,13 @@ from funcy import cached_property, first
|
||||
|
||||
from ..exceptions import ExpQueueEmptyError
|
||||
from ..executor.base import (
|
||||
EXEC_PID_DIR,
|
||||
EXEC_TMP_DIR,
|
||||
BaseExecutor,
|
||||
ExecutorInfo,
|
||||
ExecutorResult,
|
||||
TaskStatus,
|
||||
)
|
||||
from ..executor.local import TempDirExecutor
|
||||
from ..utils import EXEC_PID_DIR, EXEC_TMP_DIR
|
||||
from .base import BaseStashQueue, QueueEntry, QueueGetResult
|
||||
from .utils import fetch_running_exp_from_temp_dir
|
||||
from .workspace import WorkspaceQueue
|
||||
@@ -77,9 +76,8 @@ class TempDirQueue(WorkspaceQueue):
|
||||
for stash_rev in self.proc:
|
||||
infofile = self.get_infofile_path(stash_rev)
|
||||
executor_info = ExecutorInfo.load_json(infofile)
|
||||
if (
|
||||
not executor_info.status <= TaskStatus.SUCCESS
|
||||
and os.path.exists(executor_info.root_dir)
|
||||
if executor_info.status <= TaskStatus.SUCCESS and os.path.exists(
|
||||
executor_info.root_dir
|
||||
):
|
||||
yield QueueEntry(
|
||||
self.repo.root_dir,
|
||||
|
||||
@@ -1,17 +1,40 @@
|
||||
import logging
|
||||
from typing import TYPE_CHECKING, Dict
|
||||
from typing import TYPE_CHECKING, Dict, List
|
||||
|
||||
from scmrepo.exceptions import SCMError
|
||||
|
||||
from ..executor.base import ExecutorInfo, TaskStatus
|
||||
from ..refs import EXEC_CHECKPOINT, EXEC_NAMESPACE, EXPS_NAMESPACE, EXPS_STASH
|
||||
from ..utils import get_exp_rwlock, iter_remote_refs
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
if TYPE_CHECKING:
|
||||
from scmrepo.git import Git
|
||||
|
||||
from .base import BaseStashQueue
|
||||
|
||||
|
||||
def get_remote_executor_refs(scm: "Git", remote_url: str) -> List[str]:
|
||||
"""Get result list refs from a remote repository
|
||||
|
||||
Args:
|
||||
remote_url : remote executor's url
|
||||
"""
|
||||
refs = []
|
||||
for ref in iter_remote_refs(
|
||||
scm,
|
||||
remote_url,
|
||||
base=EXPS_NAMESPACE,
|
||||
):
|
||||
if ref == EXEC_CHECKPOINT or (
|
||||
not ref.startswith(EXEC_NAMESPACE) and ref != EXPS_STASH
|
||||
):
|
||||
refs.append(ref)
|
||||
return refs
|
||||
|
||||
|
||||
def fetch_running_exp_from_temp_dir(
|
||||
queue: "BaseStashQueue", rev: str, fetch_refs: bool
|
||||
) -> Dict[str, Dict]:
|
||||
@@ -36,24 +59,27 @@ def fetch_running_exp_from_temp_dir(
|
||||
info = ExecutorInfo.from_dict(load_json(infofile))
|
||||
except OSError:
|
||||
return result
|
||||
if info.status < TaskStatus.FAILED:
|
||||
if info.status <= TaskStatus.RUNNING:
|
||||
result[rev] = info.asdict()
|
||||
if info.git_url and fetch_refs and info.status > TaskStatus.PREPARING:
|
||||
|
||||
def on_diverged(_ref: str, _checkpoint: bool):
|
||||
return False
|
||||
return True
|
||||
|
||||
executor = TempDirExecutor.from_info(info)
|
||||
try:
|
||||
for ref in executor.fetch_exps(
|
||||
queue.scm,
|
||||
on_diverged=on_diverged,
|
||||
):
|
||||
logger.debug("Updated running experiment '%s'.", ref)
|
||||
last_rev = queue.scm.get_ref(ref)
|
||||
result[rev]["last"] = last_rev
|
||||
if last_rev:
|
||||
result[last_rev] = info.asdict()
|
||||
refs = get_remote_executor_refs(queue.scm, executor.git_url)
|
||||
with get_exp_rwlock(queue.repo, writes=refs):
|
||||
for ref in executor.fetch_exps(
|
||||
queue.scm,
|
||||
refs,
|
||||
on_diverged=on_diverged,
|
||||
):
|
||||
logger.debug("Updated running experiment '%s'.", ref)
|
||||
last_rev = queue.scm.get_ref(ref)
|
||||
result[rev]["last"] = last_rev
|
||||
if last_rev:
|
||||
result[last_rev] = info.asdict()
|
||||
except (InvalidRemoteSCMRepo, SCMError):
|
||||
# ignore stale info files
|
||||
del result[rev]
|
||||
|
||||
@@ -21,7 +21,8 @@ from ..executor.base import (
|
||||
TaskStatus,
|
||||
)
|
||||
from ..executor.local import WorkspaceExecutor
|
||||
from ..refs import EXEC_BRANCH
|
||||
from ..refs import EXEC_BRANCH, WORKSPACE_STASH
|
||||
from ..utils import get_exp_rwlock
|
||||
from .base import BaseStashQueue, QueueDoneResult, QueueEntry, QueueGetResult
|
||||
|
||||
if TYPE_CHECKING:
|
||||
@@ -34,7 +35,8 @@ class WorkspaceQueue(BaseStashQueue):
|
||||
_EXEC_NAME: Optional[str] = "workspace"
|
||||
|
||||
def put(self, *args, **kwargs) -> QueueEntry:
|
||||
return self._stash_exp(*args, **kwargs)
|
||||
with get_exp_rwlock(self.repo, writes=["workspace", WORKSPACE_STASH]):
|
||||
return self._stash_exp(*args, **kwargs)
|
||||
|
||||
def get(self) -> QueueGetResult:
|
||||
revs = self.stash.stash_revs
|
||||
|
||||
@@ -16,6 +16,7 @@ EXEC_BRANCH = f"{EXEC_NAMESPACE}/EXEC_BRANCH"
|
||||
EXEC_BASELINE = f"{EXEC_NAMESPACE}/EXEC_BASELINE"
|
||||
EXEC_HEAD = f"{EXEC_NAMESPACE}/EXEC_HEAD"
|
||||
EXEC_MERGE = f"{EXEC_NAMESPACE}/EXEC_MERGE"
|
||||
EXPS_TEMP = f"{EXPS_NAMESPACE}/temp"
|
||||
STASHES = {WORKSPACE_STASH, CELERY_STASH}
|
||||
|
||||
|
||||
@@ -23,9 +24,7 @@ class ExpRefInfo:
|
||||
|
||||
namespace = EXPS_NAMESPACE
|
||||
|
||||
def __init__(
|
||||
self, baseline_sha: Optional[str] = None, name: Optional[str] = None
|
||||
):
|
||||
def __init__(self, baseline_sha: str, name: Optional[str] = None):
|
||||
self.baseline_sha = baseline_sha
|
||||
self.name: str = name if name else ""
|
||||
|
||||
@@ -33,7 +32,7 @@ class ExpRefInfo:
|
||||
return "/".join(self.parts)
|
||||
|
||||
def __repr__(self):
|
||||
baseline = f"'{self.baseline_sha}'" if self.baseline_sha else "None"
|
||||
baseline = f"'{self.baseline_sha}'"
|
||||
name = f"'{self.name}'" if self.name else "None"
|
||||
return f"ExpRefInfo(baseline_sha={baseline}, name={name})"
|
||||
|
||||
@@ -41,11 +40,7 @@ class ExpRefInfo:
|
||||
def parts(self):
|
||||
return (
|
||||
(self.namespace,)
|
||||
+ (
|
||||
(self.baseline_sha[:2], self.baseline_sha[2:])
|
||||
if self.baseline_sha
|
||||
else ()
|
||||
)
|
||||
+ ((self.baseline_sha[:2], self.baseline_sha[2:]))
|
||||
+ ((self.name,) if self.name else ())
|
||||
)
|
||||
|
||||
@@ -54,14 +49,13 @@ class ExpRefInfo:
|
||||
try:
|
||||
parts = ref.split("/")
|
||||
if (
|
||||
len(parts) < 2
|
||||
or len(parts) == 3
|
||||
len(parts) < 4
|
||||
or len(parts) > 5
|
||||
or "/".join(parts[:2]) != EXPS_NAMESPACE
|
||||
):
|
||||
raise InvalidExpRefError(ref)
|
||||
except ValueError:
|
||||
raise InvalidExpRefError(ref)
|
||||
baseline_sha = parts[2] + parts[3] if len(parts) >= 4 else None
|
||||
baseline_sha = parts[2] + parts[3]
|
||||
name = parts[4] if len(parts) == 5 else None
|
||||
return cls(baseline_sha, name)
|
||||
|
||||
@@ -152,8 +152,7 @@ def _remove_commited_exps(
|
||||
push_refspec(
|
||||
scm,
|
||||
remote,
|
||||
None,
|
||||
str(ref_info),
|
||||
[(None, str(ref_info))],
|
||||
progress=pbar.update_git,
|
||||
)
|
||||
else:
|
||||
|
||||
@@ -0,0 +1,44 @@
|
||||
import logging
|
||||
import os
|
||||
from typing import TYPE_CHECKING, List, Optional
|
||||
|
||||
from funcy import first
|
||||
|
||||
if TYPE_CHECKING:
|
||||
from dvc.repo import Repo
|
||||
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
def save(
|
||||
repo: "Repo",
|
||||
name: Optional[str] = None,
|
||||
force: bool = False,
|
||||
include_untracked: Optional[List[str]] = None,
|
||||
) -> Optional[str]:
|
||||
"""Save the current workspace status as an experiment.
|
||||
|
||||
Returns the saved experiment's SHAs.
|
||||
"""
|
||||
queue = repo.experiments.workspace_queue
|
||||
logger.debug("Saving workspace in %s", os.getcwd())
|
||||
|
||||
staged, _, _ = repo.scm.status(untracked_files="no")
|
||||
if staged:
|
||||
logger.warning(
|
||||
"Your workspace contains staged Git changes which will be "
|
||||
"unstaged before saving this experiment."
|
||||
)
|
||||
repo.scm.reset()
|
||||
|
||||
entry = repo.experiments.new(queue=queue, name=name, force=force)
|
||||
executor = queue.init_executor(repo.experiments, entry)
|
||||
|
||||
save_result = executor.save(
|
||||
executor.info, force=force, include_untracked=include_untracked
|
||||
)
|
||||
result = queue.collect_executor(repo.experiments, executor, save_result)
|
||||
|
||||
exp_rev = first(result)
|
||||
return exp_rev
|
||||
@@ -8,8 +8,10 @@ from typing import (
|
||||
Any,
|
||||
Callable,
|
||||
Dict,
|
||||
Iterable,
|
||||
List,
|
||||
Optional,
|
||||
Set,
|
||||
Tuple,
|
||||
Union,
|
||||
)
|
||||
@@ -24,6 +26,7 @@ from dvc.utils import error_handler, onerror_collect, relpath
|
||||
from .refs import ExpRefInfo
|
||||
|
||||
if TYPE_CHECKING:
|
||||
from scmrepo.git import Git
|
||||
from scmrepo.git.objects import GitCommit
|
||||
|
||||
from dvc.repo import Repo
|
||||
@@ -134,6 +137,7 @@ def _collect_complete_experiment(
|
||||
|
||||
checkpoint: bool = True if len(revs) > 1 else False
|
||||
prev = ""
|
||||
|
||||
for rev in revs:
|
||||
status = ExpStatus.Running if rev in running else ExpStatus.Success
|
||||
collected_exp = collect_experiment_commit(
|
||||
@@ -215,41 +219,55 @@ def _collect_branch(
|
||||
return results
|
||||
|
||||
|
||||
def get_names(repo: "Repo", result: Dict[str, Dict[str, Any]]):
|
||||
def get_branch_names(
|
||||
scm: "Git", baseline_set: Iterable[str]
|
||||
) -> Dict[str, Optional[str]]:
|
||||
names: Dict[str, Optional[str]] = {}
|
||||
for base in [
|
||||
f"refs/exps/{baseline[:2]}/{baseline[2:]}/"
|
||||
for baseline in baseline_set
|
||||
] + ["refs/heads/", "refs/tags/"]:
|
||||
for ref in scm.iter_refs(base=base):
|
||||
if ref:
|
||||
try:
|
||||
rev = scm.get_ref(ref)
|
||||
names[rev] = ref[len(base) :]
|
||||
except KeyError:
|
||||
logger.debug("unreosolved ref %s", ref)
|
||||
logger.debug("found refs for revs: %s", names)
|
||||
return names
|
||||
|
||||
|
||||
def update_names(
|
||||
repo: "Repo",
|
||||
branch_names: Dict[str, Optional[str]],
|
||||
result: Dict[str, Dict[str, Any]],
|
||||
):
|
||||
|
||||
rev_set = set()
|
||||
baseline_set = set()
|
||||
for baseline in result:
|
||||
for rev in result[baseline]:
|
||||
if rev == "baseline":
|
||||
rev = baseline
|
||||
baseline_set.add(rev)
|
||||
if rev != "workspace":
|
||||
rev_set.add(rev)
|
||||
|
||||
names: Dict[str, Optional[str]] = {}
|
||||
for base in ("refs/tags/", "refs/heads/"):
|
||||
if rev_set:
|
||||
names.update(
|
||||
(rev, ref[len(base) :])
|
||||
for rev, ref in repo.scm.describe(
|
||||
baseline_set, base=base
|
||||
).items()
|
||||
if ref is not None
|
||||
)
|
||||
rev_set.difference_update(names.keys())
|
||||
if rev_set:
|
||||
rev_set.difference_update(branch_names.keys())
|
||||
|
||||
exact_name = repo.experiments.get_exact_name(rev_set)
|
||||
|
||||
for baseline, baseline_results in result.items():
|
||||
name_set: Set[str] = set()
|
||||
for rev, rev_result in baseline_results.items():
|
||||
name: Optional[str] = None
|
||||
if rev == "baseline":
|
||||
rev = baseline
|
||||
if rev == "workspace":
|
||||
continue
|
||||
name = names.get(rev, None) or exact_name[rev]
|
||||
if name:
|
||||
name = branch_names.get(rev, None) or exact_name[rev]
|
||||
if name and name not in name_set:
|
||||
name_set.add(name)
|
||||
rev_result["data"]["name"] = name
|
||||
|
||||
|
||||
@@ -336,6 +354,40 @@ def update_new(
|
||||
to_dict[baseline][rev] = to_dict[baseline].get(rev, experiment)
|
||||
|
||||
|
||||
def move_properties_to_head(result: Dict[str, Dict[str, Dict[str, Any]]]):
|
||||
for _, baseline_results in result.items():
|
||||
checkpoint: bool = False
|
||||
head: Dict[str, Any] = {}
|
||||
for rev, rev_data in baseline_results.items():
|
||||
if (
|
||||
"data" not in rev_data
|
||||
or rev_data["data"].get("checkpoint_tip", None) is None
|
||||
):
|
||||
checkpoint = False
|
||||
head = {}
|
||||
continue
|
||||
|
||||
rev_result: Dict[str, Any] = rev_data["data"]
|
||||
if (
|
||||
checkpoint is True
|
||||
and rev_result["checkpoint_tip"] == head["checkpoint_tip"]
|
||||
):
|
||||
if "name" in rev_result and "name" not in head:
|
||||
head["name"] = rev_result["name"]
|
||||
del rev_result["name"]
|
||||
if rev_result["executor"]:
|
||||
if not head["executor"]:
|
||||
head["executor"] = rev_result["executor"]
|
||||
rev_result["executor"] = None
|
||||
if rev_result["status"] == ExpStatus.Running.name:
|
||||
head["status"] = ExpStatus.Running.name
|
||||
rev_result["status"] = ExpStatus.Success.name
|
||||
else:
|
||||
if rev_result["checkpoint_tip"] == rev:
|
||||
head = rev_result
|
||||
checkpoint = True
|
||||
|
||||
|
||||
def show(
|
||||
repo: "Repo",
|
||||
all_branches=False,
|
||||
@@ -354,8 +406,7 @@ def show(
|
||||
if repo.scm.no_commits:
|
||||
return {}
|
||||
|
||||
if onerror is None:
|
||||
onerror = _show_onerror_collect
|
||||
onerror = onerror or _show_onerror_collect
|
||||
|
||||
res: Dict[str, Dict] = defaultdict(OrderedDict)
|
||||
|
||||
@@ -368,6 +419,7 @@ def show(
|
||||
found_revs.update(
|
||||
iter_revs(repo.scm, revs, num, all_branches, all_tags, all_commits)
|
||||
)
|
||||
branch_names = get_branch_names(repo.scm, found_revs)
|
||||
|
||||
running: Dict[str, Dict] = repo.experiments.get_running_exps(
|
||||
fetch_refs=fetch_running
|
||||
@@ -421,6 +473,8 @@ def show(
|
||||
update_new(res, queued_experiment)
|
||||
|
||||
if not sha_only:
|
||||
get_names(repo, res)
|
||||
update_names(repo, branch_names, res)
|
||||
|
||||
move_properties_to_head(res)
|
||||
|
||||
return res
|
||||
|
||||
@@ -1,6 +1,9 @@
|
||||
import os
|
||||
import sys
|
||||
from collections import defaultdict
|
||||
from functools import wraps
|
||||
from typing import (
|
||||
TYPE_CHECKING,
|
||||
Callable,
|
||||
Dict,
|
||||
Generator,
|
||||
@@ -9,6 +12,7 @@ from typing import (
|
||||
Mapping,
|
||||
Optional,
|
||||
Set,
|
||||
Tuple,
|
||||
Union,
|
||||
)
|
||||
|
||||
@@ -16,6 +20,7 @@ from scmrepo.git import Git
|
||||
|
||||
from dvc.exceptions import InvalidArgumentError
|
||||
from dvc.repo.experiments.exceptions import AmbiguousExpRefInfo
|
||||
from dvc.rwlock import rwlock
|
||||
|
||||
from .refs import (
|
||||
EXEC_APPLY,
|
||||
@@ -28,18 +33,34 @@ from .refs import (
|
||||
ExpRefInfo,
|
||||
)
|
||||
|
||||
if TYPE_CHECKING:
|
||||
from dvc.repo import Repo
|
||||
|
||||
def scm_locked(f):
|
||||
# Lock the experiments workspace so that we don't try to perform two
|
||||
# different sequences of git operations at once
|
||||
@wraps(f)
|
||||
def wrapper(exp, *args, **kwargs):
|
||||
from dvc.scm import map_scm_exception
|
||||
|
||||
with map_scm_exception(), exp.scm_lock:
|
||||
return f(exp, *args, **kwargs)
|
||||
EXEC_TMP_DIR = "exps"
|
||||
EXEC_PID_DIR = "run"
|
||||
|
||||
return wrapper
|
||||
|
||||
def get_exp_rwlock(
|
||||
repo: "Repo",
|
||||
reads: Optional[List[str]] = None,
|
||||
writes: Optional[List[str]] = None,
|
||||
):
|
||||
reads = reads or []
|
||||
writes = writes or []
|
||||
|
||||
cmd = " ".join(sys.argv)
|
||||
path = os.path.join(repo.tmp_dir, EXEC_TMP_DIR)
|
||||
repo.fs.makedirs(path, exist_ok=True)
|
||||
|
||||
return rwlock(
|
||||
path,
|
||||
repo.fs,
|
||||
cmd,
|
||||
reads,
|
||||
writes,
|
||||
repo.config["core"].get("hardlink_lock", False),
|
||||
)
|
||||
|
||||
|
||||
def unlocked_repo(f):
|
||||
@@ -79,13 +100,13 @@ def exp_refs_by_rev(scm: "Git", rev: str) -> Generator[ExpRefInfo, None, None]:
|
||||
|
||||
|
||||
def exp_refs_by_baseline(
|
||||
scm: "Git", revs: Set[str], url: Optional[str] = None
|
||||
scm: "Git", revs: Optional[Set[str]] = None, url: Optional[str] = None
|
||||
) -> Mapping[str, List[ExpRefInfo]]:
|
||||
"""Iterate over all experiment refs with the specified baseline."""
|
||||
all_exp_refs = exp_refs(scm, url)
|
||||
result = defaultdict(list)
|
||||
for ref in all_exp_refs:
|
||||
if ref.baseline_sha in revs:
|
||||
if revs is None or ref.baseline_sha in revs:
|
||||
result[ref.baseline_sha].append(ref)
|
||||
return result
|
||||
|
||||
@@ -108,8 +129,7 @@ def iter_remote_refs(
|
||||
def push_refspec(
|
||||
scm: "Git",
|
||||
url: str,
|
||||
src: Optional[str],
|
||||
dest: str,
|
||||
push_list=List[Tuple[Optional[str], str]],
|
||||
force: bool = False,
|
||||
on_diverged: Optional[Callable[[str, str], bool]] = None,
|
||||
**kwargs,
|
||||
@@ -119,20 +139,21 @@ def push_refspec(
|
||||
|
||||
from ...scm import GitAuthError, SCMError
|
||||
|
||||
if not src:
|
||||
refspecs = [f":{dest}"]
|
||||
elif src.endswith("/"):
|
||||
refspecs = []
|
||||
dest = dest.rstrip("/") + "/"
|
||||
for ref in scm.iter_refs(base=src):
|
||||
refname = ref.split("/")[-1]
|
||||
refspecs.append(f"{ref}:{dest}{refname}")
|
||||
else:
|
||||
if dest.endswith("/"):
|
||||
refname = src.split("/")[-1]
|
||||
refspecs = [f"{src}:{dest}/{refname}"]
|
||||
refspecs = []
|
||||
for src, dest in push_list:
|
||||
if not src:
|
||||
refspecs.append(f":{dest}")
|
||||
elif src.endswith("/"):
|
||||
dest = dest.rstrip("/") + "/"
|
||||
for ref in scm.iter_refs(base=src):
|
||||
refname = ref.split("/")[-1]
|
||||
refspecs.append(f"{ref}:{dest}{refname}")
|
||||
else:
|
||||
refspecs = [f"{src}:{dest}"]
|
||||
if dest.endswith("/"):
|
||||
refname = src.split("/")[-1]
|
||||
refspecs.append(f"{src}:{dest}/{refname}")
|
||||
else:
|
||||
refspecs.append(f"{src}:{dest}")
|
||||
|
||||
try:
|
||||
results = scm.push_refspecs(
|
||||
|
||||
+2
-15
@@ -17,20 +17,6 @@ if TYPE_CHECKING:
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
def _fetch_worktree(repo, remote):
|
||||
from dvc_data.index import save
|
||||
|
||||
index = repo.index.data["repo"]
|
||||
for key, entry in index.iteritems():
|
||||
entry.fs = remote.fs
|
||||
entry.path = remote.fs.path.join(
|
||||
remote.path,
|
||||
*key,
|
||||
)
|
||||
save(index)
|
||||
return len(index)
|
||||
|
||||
|
||||
@locked
|
||||
def fetch(
|
||||
self,
|
||||
@@ -59,6 +45,7 @@ def fetch(
|
||||
remote is configured
|
||||
"""
|
||||
from dvc.repo.imports import save_imports
|
||||
from dvc.repo.worktree import fetch_worktree
|
||||
from dvc_data.hashfile.transfer import TransferResult
|
||||
|
||||
if isinstance(targets, str):
|
||||
@@ -67,7 +54,7 @@ def fetch(
|
||||
with suppress(NoRemoteError):
|
||||
_remote = self.cloud.get_remote(name=remote)
|
||||
if _remote.worktree:
|
||||
return _fetch_worktree(self, _remote)
|
||||
return fetch_worktree(self, _remote)
|
||||
|
||||
failed_count = 0
|
||||
|
||||
|
||||
@@ -97,6 +97,9 @@ def imp_url(
|
||||
else:
|
||||
stage.run(jobs=jobs, no_download=no_download)
|
||||
|
||||
if not no_exec and stage.deps[0].fs.version_aware:
|
||||
stage.outs[0].can_push = False
|
||||
|
||||
stage.frozen = frozen
|
||||
|
||||
dvcfile.dump(stage)
|
||||
|
||||
+51
-7
@@ -11,6 +11,7 @@ from typing import (
|
||||
Optional,
|
||||
Set,
|
||||
Tuple,
|
||||
Union,
|
||||
)
|
||||
|
||||
from funcy import cached_property, nullcontext
|
||||
@@ -67,14 +68,50 @@ class Index:
|
||||
if stages is not None:
|
||||
self.stages: List["Stage"] = stages
|
||||
self._collected_targets: Dict[int, List["StageInfo"]] = {}
|
||||
self._metrics: Dict[str, List[str]] = {}
|
||||
self._plots: Dict[str, Any] = {}
|
||||
self._params: Dict[str, List[str]] = {}
|
||||
|
||||
@cached_property
|
||||
def stages(self) -> List["Stage"]: # pylint: disable=method-hidden
|
||||
# note that ideally we should be keeping this in a set as it is unique,
|
||||
# hashable and has no concept of orderliness on its own. But we depend
|
||||
# on this to be somewhat ordered for status/metrics/plots, etc.
|
||||
return self._collect()
|
||||
|
||||
@cached_property
|
||||
def _top_metrics(self):
|
||||
self._collect()
|
||||
return self._metrics
|
||||
|
||||
@cached_property
|
||||
def _top_plots(self):
|
||||
self._collect()
|
||||
return self._plots
|
||||
|
||||
@cached_property
|
||||
def _top_params(self):
|
||||
self._collect()
|
||||
return self._params
|
||||
|
||||
def _collect(self):
|
||||
if "stages" in self.__dict__:
|
||||
return self.stages
|
||||
|
||||
onerror = self.repo.stage_collection_error_handler
|
||||
return self.stage_collector.collect_repo(onerror=onerror)
|
||||
|
||||
# pylint: disable=protected-access
|
||||
(
|
||||
stages,
|
||||
metrics,
|
||||
plots,
|
||||
params,
|
||||
) = self.stage_collector._collect_all_from_repo(onerror=onerror)
|
||||
self.stages = stages
|
||||
self._metrics = metrics
|
||||
self._plots = plots
|
||||
self._params = params
|
||||
return stages
|
||||
|
||||
def __repr__(self) -> str:
|
||||
from dvc.fs import LocalFileSystem
|
||||
@@ -152,7 +189,7 @@ class Index:
|
||||
|
||||
def targets_view(
|
||||
self,
|
||||
targets: "TargetType",
|
||||
targets: Optional["TargetType"],
|
||||
stage_filter: Optional[Callable[["Stage"], bool]] = None,
|
||||
outs_filter: Optional[Callable[["Output"], bool]] = None,
|
||||
**kwargs: Any,
|
||||
@@ -268,6 +305,7 @@ class Index:
|
||||
force: bool = False,
|
||||
recursive: bool = False,
|
||||
jobs: int = None,
|
||||
push: bool = False,
|
||||
) -> "ObjectContainer":
|
||||
from collections import defaultdict
|
||||
|
||||
@@ -281,6 +319,7 @@ class Index:
|
||||
force=force,
|
||||
jobs=jobs,
|
||||
filter_info=filter_info,
|
||||
push=push,
|
||||
).items():
|
||||
used[odb].update(objs)
|
||||
return used
|
||||
@@ -427,10 +466,10 @@ class IndexView:
|
||||
return prefixes
|
||||
|
||||
@cached_property
|
||||
def data(self) -> "Dict[str, DataIndexView]":
|
||||
def data(self) -> Dict[str, Union["DataIndex", "DataIndexView"]]:
|
||||
from functools import partial
|
||||
|
||||
from dvc_data.index import view
|
||||
from dvc_data.index import DataIndex, view
|
||||
|
||||
def key_filter(workspace: str, key: "DataIndexKey"):
|
||||
try:
|
||||
@@ -442,10 +481,15 @@ class IndexView:
|
||||
except KeyError:
|
||||
return False
|
||||
|
||||
data = {}
|
||||
data: Dict[str, Union["DataIndex", "DataIndexView"]] = {}
|
||||
for workspace, data_index in self._index.data.items():
|
||||
data_index.load()
|
||||
data[workspace] = view(data_index, partial(key_filter, workspace))
|
||||
if self._stages:
|
||||
data_index.load()
|
||||
data[workspace] = view(
|
||||
data_index, partial(key_filter, workspace)
|
||||
)
|
||||
else:
|
||||
data[workspace] = DataIndex()
|
||||
return data
|
||||
|
||||
|
||||
|
||||
@@ -9,7 +9,12 @@ from dvc.output import Output
|
||||
from dvc.repo import locked
|
||||
from dvc.repo.collect import StrPaths, collect
|
||||
from dvc.scm import NoSCMError
|
||||
from dvc.utils import error_handler, errored_revisions, onerror_collect
|
||||
from dvc.utils import (
|
||||
as_posix,
|
||||
error_handler,
|
||||
errored_revisions,
|
||||
onerror_collect,
|
||||
)
|
||||
from dvc.utils.collections import ensure_list
|
||||
from dvc.utils.serialize import load_path
|
||||
|
||||
@@ -28,6 +33,17 @@ def _to_fs_paths(metrics: List[Output]) -> StrPaths:
|
||||
return result
|
||||
|
||||
|
||||
def _collect_top_level_metrics(repo):
|
||||
top_metrics = repo.index._top_metrics # pylint: disable=protected-access
|
||||
for dvcfile, metrics in top_metrics.items():
|
||||
wdir = repo.fs.path.relpath(
|
||||
repo.fs.path.parent(dvcfile), repo.root_dir
|
||||
)
|
||||
for file in metrics:
|
||||
path = repo.fs.path.join(wdir, as_posix(file))
|
||||
yield repo.fs.path.normpath(path)
|
||||
|
||||
|
||||
def _collect_metrics(repo, targets, revision, recursive):
|
||||
metrics, fs_paths = collect(
|
||||
repo,
|
||||
@@ -94,6 +110,7 @@ def _read_metrics(repo, metrics, rev, onerror=None):
|
||||
|
||||
def _gather_metrics(repo, targets, rev, recursive, onerror=None):
|
||||
metrics = _collect_metrics(repo, targets, rev, recursive)
|
||||
metrics.extend(_collect_top_level_metrics(repo))
|
||||
return _read_metrics(repo, metrics, rev, onerror=onerror)
|
||||
|
||||
|
||||
|
||||
+18
-1
@@ -20,7 +20,12 @@ from dvc.repo.collect import collect
|
||||
from dvc.scm import NoSCMError
|
||||
from dvc.stage import PipelineStage
|
||||
from dvc.ui import ui
|
||||
from dvc.utils import error_handler, errored_revisions, onerror_collect
|
||||
from dvc.utils import (
|
||||
as_posix,
|
||||
error_handler,
|
||||
errored_revisions,
|
||||
onerror_collect,
|
||||
)
|
||||
from dvc.utils.collections import ensure_list
|
||||
from dvc.utils.serialize import load_path
|
||||
|
||||
@@ -35,6 +40,17 @@ def _is_params(dep: "Output"):
|
||||
return isinstance(dep, ParamsDependency)
|
||||
|
||||
|
||||
def _collect_top_level_params(repo):
|
||||
top_params = repo.index._top_params # pylint: disable=protected-access
|
||||
for dvcfile, params in top_params.items():
|
||||
wdir = repo.fs.path.relpath(
|
||||
repo.fs.path.parent(dvcfile), repo.root_dir
|
||||
)
|
||||
for file in params:
|
||||
path = repo.fs.path.join(wdir, as_posix(file))
|
||||
yield repo.fs.path.normpath(path)
|
||||
|
||||
|
||||
def _collect_configs(
|
||||
repo: "Repo", rev, targets=None, deps=False, stages=None
|
||||
) -> Tuple[List["Output"], List[str]]:
|
||||
@@ -176,6 +192,7 @@ def _gather_params(
|
||||
param_outs, params_fs_paths = _collect_configs(
|
||||
repo, rev, targets=targets, deps=deps, stages=stages
|
||||
)
|
||||
params_fs_paths.extend(_collect_top_level_params(repo=repo))
|
||||
params = _read_params(
|
||||
repo,
|
||||
params=param_outs,
|
||||
|
||||
+33
-34
@@ -19,7 +19,7 @@ from typing import (
|
||||
|
||||
import dpath.options
|
||||
import dpath.util
|
||||
from funcy import cached_property, first, project
|
||||
from funcy import cached_property, distinct, first, project
|
||||
|
||||
from dvc.exceptions import DvcException
|
||||
from dvc.utils import error_handler, errored_revisions, onerror_collect
|
||||
@@ -314,16 +314,18 @@ def _get_data_targets(definitions: Dict):
|
||||
|
||||
|
||||
def infer_data_sources(plot_id, config=None):
|
||||
def _deduplicate(lst: List):
|
||||
return list({elem: None for elem in lst}.keys())
|
||||
|
||||
y = config.get("y", None)
|
||||
|
||||
if isinstance(y, dict):
|
||||
sources = list(y.keys())
|
||||
else:
|
||||
sources = [plot_id]
|
||||
|
||||
return _deduplicate(source for source in sources)
|
||||
x = config.get("x", None)
|
||||
if isinstance(x, dict):
|
||||
sources.append(first(x.keys()))
|
||||
|
||||
return distinct(source for source in sources)
|
||||
|
||||
|
||||
def _matches(targets, config_file, plot_id):
|
||||
@@ -437,36 +439,33 @@ def _resolve_definitions(
|
||||
|
||||
|
||||
def _collect_pipeline_files(repo, targets: List[str], props, onerror=None):
|
||||
from dvc.dvcfile import PipelineFile
|
||||
|
||||
result: Dict[str, Dict] = {}
|
||||
dvcfiles = {stage.dvcfile for stage in repo.index.stages}
|
||||
for dvcfile in dvcfiles:
|
||||
if isinstance(dvcfile, PipelineFile):
|
||||
dvcfile_path = _relpath(repo.dvcfs, dvcfile.path)
|
||||
dvcfile_defs = dvcfile.load().get("plots", {})
|
||||
dvcfile_defs_dict: Dict[str, Union[Dict, None]] = {}
|
||||
if isinstance(dvcfile_defs, list):
|
||||
for elem in dvcfile_defs:
|
||||
if isinstance(elem, str):
|
||||
dvcfile_defs_dict[elem] = None
|
||||
else:
|
||||
k, v = list(elem.items())[0]
|
||||
dvcfile_defs_dict[k] = v
|
||||
else:
|
||||
dvcfile_defs_dict = dvcfile_defs
|
||||
resolved = _resolve_definitions(
|
||||
repo.dvcfs,
|
||||
targets,
|
||||
props,
|
||||
dvcfile_path,
|
||||
dvcfile_defs_dict,
|
||||
onerror=onerror,
|
||||
)
|
||||
dpath.util.merge(
|
||||
result,
|
||||
{dvcfile_path: resolved},
|
||||
)
|
||||
top_plots = repo.index._top_plots # pylint: disable=protected-access
|
||||
for dvcfile, plots_def in top_plots.items():
|
||||
dvcfile_path = _relpath(repo.dvcfs, dvcfile)
|
||||
dvcfile_defs_dict: Dict[str, Union[Dict, None]] = {}
|
||||
if isinstance(plots_def, list):
|
||||
for elem in plots_def:
|
||||
if isinstance(elem, str):
|
||||
dvcfile_defs_dict[elem] = None
|
||||
else:
|
||||
k, v = list(elem.items())[0]
|
||||
dvcfile_defs_dict[k] = v
|
||||
else:
|
||||
dvcfile_defs_dict = plots_def
|
||||
|
||||
resolved = _resolve_definitions(
|
||||
repo.dvcfs,
|
||||
targets,
|
||||
props,
|
||||
dvcfile_path,
|
||||
dvcfile_defs_dict,
|
||||
onerror=onerror,
|
||||
)
|
||||
dpath.util.merge(
|
||||
result,
|
||||
{dvcfile_path: resolved},
|
||||
)
|
||||
return result
|
||||
|
||||
|
||||
|
||||
+5
-44
@@ -9,48 +9,6 @@ if TYPE_CHECKING:
|
||||
from dvc_objects.db.base import ObjectDB
|
||||
|
||||
|
||||
def _push_worktree(repo, remote):
|
||||
from dvc_data.index import checkout
|
||||
from dvc_data.index.save import build_tree
|
||||
|
||||
index = repo.index.data["repo"]
|
||||
checkout(index, remote.path, remote.fs)
|
||||
|
||||
for stage in repo.index.stages:
|
||||
for out in stage.outs:
|
||||
if not out.use_cache:
|
||||
continue
|
||||
|
||||
if not out.is_in_repo:
|
||||
continue
|
||||
|
||||
workspace, key = out.index_key
|
||||
index = repo.index.data[workspace]
|
||||
entry = index[key]
|
||||
if out.isdir():
|
||||
old_tree = out.get_obj()
|
||||
entry.hash_info = old_tree.hash_info
|
||||
entry.meta = out.meta
|
||||
for subkey, entry in index.iteritems(key):
|
||||
if entry.meta.isdir:
|
||||
continue
|
||||
fs_path = repo.fs.path.join(repo.root_dir, *subkey)
|
||||
_, hash_info = old_tree.get(
|
||||
repo.fs.path.relparts(fs_path, out.fs_path)
|
||||
)
|
||||
entry.hash_info = hash_info
|
||||
tree_meta, new_tree = build_tree(index, key)
|
||||
out.obj = new_tree
|
||||
out.hash_info = new_tree.hash_info
|
||||
out.meta = tree_meta
|
||||
else:
|
||||
out.hash_info = entry.hash_info
|
||||
out.meta = entry.meta
|
||||
stage.dvcfile.dump(stage, with_files=True, update_pipeline=False)
|
||||
|
||||
return len(index)
|
||||
|
||||
|
||||
@locked
|
||||
def push(
|
||||
self,
|
||||
@@ -68,9 +26,11 @@ def push(
|
||||
odb: Optional["ObjectDB"] = None,
|
||||
include_imports=False,
|
||||
):
|
||||
from dvc.repo.worktree import push_worktree
|
||||
|
||||
_remote = self.cloud.get_remote(name=remote)
|
||||
if _remote.worktree:
|
||||
return _push_worktree(self, _remote)
|
||||
if _remote.worktree or _remote.fs.version_aware:
|
||||
return push_worktree(self, _remote)
|
||||
|
||||
used_run_cache = (
|
||||
self.stage_cache.push(remote, odb=odb) if run_cache else []
|
||||
@@ -93,6 +53,7 @@ def push(
|
||||
recursive=recursive,
|
||||
used_run_cache=used_run_cache,
|
||||
revs=revs,
|
||||
push=True,
|
||||
)
|
||||
|
||||
pushed = len(used_run_cache)
|
||||
|
||||
+110
-1
@@ -23,6 +23,7 @@ from dvc.exceptions import (
|
||||
OutputNotFoundError,
|
||||
)
|
||||
from dvc.repo import lock_repo
|
||||
from dvc.ui import ui
|
||||
from dvc.utils import as_posix, parse_target, relpath
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
@@ -139,7 +140,14 @@ class StageLoad:
|
||||
)
|
||||
with self.repo.scm_context:
|
||||
stage.dump(update_lock=update_lock)
|
||||
stage.ignore_outs()
|
||||
try:
|
||||
stage.ignore_outs()
|
||||
except FileNotFoundError as exc:
|
||||
ui.warn(
|
||||
f"Could not create .gitignore entry in {exc.filename}."
|
||||
" DVC will attempt to create .gitignore entry again when"
|
||||
" the stage is run."
|
||||
)
|
||||
|
||||
return stage
|
||||
|
||||
@@ -502,3 +510,104 @@ class StageLoad:
|
||||
|
||||
def collect_repo(self, onerror: Callable[[str, Exception], None] = None):
|
||||
return list(self._collect_repo(onerror))
|
||||
|
||||
def _load_file(self, path):
|
||||
from dvc.dvcfile import Dvcfile
|
||||
from dvc.stage.loader import SingleStageLoader, StageLoader
|
||||
|
||||
path = self._get_filepath(path)
|
||||
dvcfile = Dvcfile(self.repo, path)
|
||||
# `dvcfile.stages` is not cached
|
||||
stages = dvcfile.stages # type: ignore
|
||||
|
||||
if isinstance(stages, SingleStageLoader):
|
||||
stages_ = [stages[None]]
|
||||
else:
|
||||
assert isinstance(stages, StageLoader)
|
||||
keys = self._get_keys(stages)
|
||||
stages_ = [stages[key] for key in keys]
|
||||
|
||||
return (
|
||||
stages_,
|
||||
stages.metrics_data,
|
||||
stages.plots_data,
|
||||
stages.params_data,
|
||||
)
|
||||
|
||||
def _collect_all_from_repo(
|
||||
self, onerror: Callable[[str, Exception], None] = None
|
||||
):
|
||||
"""Collects all of the stages present in the DVC repo.
|
||||
|
||||
Args:
|
||||
onerror (optional): callable that will be called with two args:
|
||||
the filepath whose collection failed and the exc instance.
|
||||
It can report the error to continue with the collection
|
||||
(and, skip failed ones), or raise the exception to abort
|
||||
the collection.
|
||||
"""
|
||||
from dvc.dvcfile import is_valid_filename
|
||||
from dvc.fs import LocalFileSystem
|
||||
|
||||
scm = self.repo.scm
|
||||
sep = self.fs.sep
|
||||
outs: Set[str] = set()
|
||||
|
||||
is_local_fs = isinstance(self.fs, LocalFileSystem)
|
||||
|
||||
def is_ignored(path):
|
||||
# apply only for the local fs
|
||||
return is_local_fs and scm.is_ignored(path)
|
||||
|
||||
def is_dvcfile_and_not_ignored(root, file):
|
||||
return is_valid_filename(file) and not is_ignored(
|
||||
f"{root}{sep}{file}"
|
||||
)
|
||||
|
||||
def is_out_or_ignored(root, directory):
|
||||
dir_path = f"{root}{sep}{directory}"
|
||||
# trailing slash needed to check if a directory is gitignored
|
||||
return dir_path in outs or is_ignored(f"{dir_path}{sep}")
|
||||
|
||||
walk_iter = self.repo.dvcignore.walk(self.fs, self.repo.root_dir)
|
||||
if logger.isEnabledFor(logging.TRACE): # type: ignore[attr-defined]
|
||||
walk_iter = log_walk(walk_iter)
|
||||
|
||||
stages = []
|
||||
metrics = {}
|
||||
plots = {}
|
||||
params = {}
|
||||
|
||||
for root, dirs, files in walk_iter:
|
||||
dvcfile_filter = partial(is_dvcfile_and_not_ignored, root)
|
||||
for file in filter(dvcfile_filter, files):
|
||||
file_path = self.fs.path.join(root, file)
|
||||
try:
|
||||
(
|
||||
new_stages,
|
||||
new_metrics,
|
||||
new_plots,
|
||||
new_params,
|
||||
) = self._load_file(file_path)
|
||||
except DvcException as exc:
|
||||
if onerror:
|
||||
onerror(relpath(file_path), exc)
|
||||
continue
|
||||
raise
|
||||
|
||||
stages.extend(new_stages)
|
||||
if new_metrics:
|
||||
metrics[file_path] = new_metrics
|
||||
if new_plots:
|
||||
plots[file_path] = new_plots
|
||||
if new_params:
|
||||
params[file_path] = new_params
|
||||
|
||||
outs.update(
|
||||
out.fspath
|
||||
for stage in new_stages
|
||||
for out in stage.outs
|
||||
if out.protocol == "local"
|
||||
)
|
||||
dirs[:] = [d for d in dirs if not is_out_or_ignored(root, d)]
|
||||
return stages, metrics, plots, params
|
||||
|
||||
@@ -89,6 +89,7 @@ def _cloud_status(
|
||||
remote=remote,
|
||||
jobs=jobs,
|
||||
recursive=recursive,
|
||||
push=True,
|
||||
)
|
||||
|
||||
ret = {}
|
||||
|
||||
@@ -0,0 +1,161 @@
|
||||
import logging
|
||||
from typing import TYPE_CHECKING, Any, Dict, Optional
|
||||
|
||||
from dvc.fs.callbacks import Callback
|
||||
|
||||
if TYPE_CHECKING:
|
||||
from dvc.cloud import Remote
|
||||
from dvc.index import Index, IndexView
|
||||
from dvc.output import Output
|
||||
from dvc.repo import Repo
|
||||
from dvc.stage import Stage
|
||||
from dvc.types import TargetType
|
||||
from dvc_data.hashfile.meta import Meta
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
def worktree_view(
|
||||
index: "Index",
|
||||
targets: Optional["TargetType"] = None,
|
||||
push: bool = False,
|
||||
latest_only: bool = True,
|
||||
**kwargs,
|
||||
) -> "IndexView":
|
||||
"""Return view of data that can be stored in worktree remotes.
|
||||
|
||||
Args:
|
||||
targets: Optional targets.
|
||||
push: Whether the view should be restricted to pushable data only.
|
||||
|
||||
Additional kwargs will be passed into target collection.
|
||||
"""
|
||||
|
||||
def stage_filter(stage: "Stage") -> bool:
|
||||
if push and stage.is_repo_import:
|
||||
return False
|
||||
return True
|
||||
|
||||
def outs_filter(out: "Output") -> bool:
|
||||
if (
|
||||
not out.is_in_repo
|
||||
or not out.use_cache
|
||||
or (push and not out.can_push)
|
||||
):
|
||||
return False
|
||||
# If we are not enforcing push to latest version and have a version
|
||||
# for this out, we assume it still exists and can skip pushing it
|
||||
if push and not latest_only and out.meta.version_id is not None:
|
||||
return False
|
||||
return True
|
||||
|
||||
return index.targets_view(
|
||||
targets,
|
||||
stage_filter=stage_filter,
|
||||
outs_filter=outs_filter,
|
||||
**kwargs,
|
||||
)
|
||||
|
||||
|
||||
def fetch_worktree(repo: "Repo", remote: "Remote") -> int:
|
||||
from dvc_data.index import save
|
||||
|
||||
view = worktree_view(repo.index)
|
||||
index = view.data["repo"]
|
||||
for key, entry in index.iteritems():
|
||||
entry.fs = remote.fs
|
||||
entry.path = remote.fs.path.join(
|
||||
remote.path,
|
||||
*key,
|
||||
)
|
||||
total = len(index)
|
||||
with Callback.as_tqdm_callback(
|
||||
unit="file", desc="Fetch", disable=total == 0
|
||||
) as cb:
|
||||
cb.set_size(total)
|
||||
return save(index, callback=cb)
|
||||
|
||||
|
||||
def push_worktree(repo: "Repo", remote: "Remote") -> int:
|
||||
from dvc_data.index import build, checkout
|
||||
|
||||
view = worktree_view(repo.index, push=True, latest_only=remote.worktree)
|
||||
new_index = view.data["repo"]
|
||||
if remote.worktree:
|
||||
logger.debug("Indexing latest worktree for '%s'", remote.path)
|
||||
old_index = build(remote.path, remote.fs)
|
||||
logger.debug("Pushing worktree changes to '%s'", remote.path)
|
||||
else:
|
||||
old_index = None
|
||||
logger.debug("Pushing version-aware files to '%s'", remote.path)
|
||||
|
||||
if remote.worktree:
|
||||
|
||||
# for files, if our version's checksum (etag) matches the latest remote
|
||||
# checksum, we do not need to push, even if the version IDs don't match
|
||||
def _checksum(meta: "Meta") -> Any:
|
||||
if not meta or meta.isdir:
|
||||
return meta
|
||||
return getattr(meta, remote.fs.PARAM_CHECKSUM)
|
||||
|
||||
diff_kwargs: Dict[str, Any] = {
|
||||
"meta_only": True,
|
||||
"meta_cmp_key": _checksum,
|
||||
}
|
||||
else:
|
||||
diff_kwargs = {}
|
||||
|
||||
total = len(new_index)
|
||||
with Callback.as_tqdm_callback(
|
||||
unit="file", desc="Push", disable=total == 0
|
||||
) as cb:
|
||||
cb.set_size(total)
|
||||
pushed = checkout(
|
||||
new_index,
|
||||
remote.path,
|
||||
remote.fs,
|
||||
old=old_index,
|
||||
delete=remote.worktree,
|
||||
callback=cb,
|
||||
latest_only=remote.worktree,
|
||||
**diff_kwargs,
|
||||
)
|
||||
if pushed:
|
||||
_update_pushed_meta(repo, view)
|
||||
return pushed
|
||||
|
||||
|
||||
def _update_pushed_meta(repo: "Repo", view: "IndexView"):
|
||||
from dvc_data.index.save import build_tree
|
||||
|
||||
for stage in view.stages:
|
||||
for out in stage.outs:
|
||||
workspace, key = out.index_key
|
||||
index = repo.index.data[workspace]
|
||||
entry = index[key]
|
||||
if out.isdir():
|
||||
old_tree = out.get_obj()
|
||||
entry.hash_info = old_tree.hash_info
|
||||
entry.meta = out.meta
|
||||
for subkey, entry in index.iteritems(key):
|
||||
if entry.meta.isdir:
|
||||
continue
|
||||
fs_path = repo.fs.path.join(repo.root_dir, *subkey)
|
||||
meta, hash_info = old_tree.get(
|
||||
repo.fs.path.relparts(fs_path, out.fs_path)
|
||||
)
|
||||
entry.hash_info = hash_info
|
||||
if meta.version_id is not None:
|
||||
# preserve existing version IDs for unchanged files in
|
||||
# this dir (entry will have the latest remote version
|
||||
# ID after checkout)
|
||||
entry.meta = meta
|
||||
tree_meta, new_tree = build_tree(index, key)
|
||||
out.obj = new_tree
|
||||
out.hash_info = new_tree.hash_info
|
||||
out.meta = tree_meta
|
||||
else:
|
||||
out.hash_info = entry.hash_info
|
||||
if out.meta.version_id is None:
|
||||
out.meta = entry.meta
|
||||
stage.dvcfile.dump(stage, with_files=True, update_pipeline=False)
|
||||
+54
-17
@@ -4,6 +4,7 @@ import os
|
||||
from collections import defaultdict
|
||||
from contextlib import contextmanager
|
||||
|
||||
import psutil
|
||||
from voluptuous import Invalid, Optional, Required, Schema
|
||||
|
||||
from .exceptions import DvcException
|
||||
@@ -72,35 +73,67 @@ def _infos_to_str(infos):
|
||||
)
|
||||
|
||||
|
||||
def _check_blockers(lock, info, *, mode, waiters):
|
||||
def _check_blockers(tmp_dir, lock, info, *, mode, waiters):
|
||||
from .lock import LockError
|
||||
|
||||
for waiter_path in waiters:
|
||||
blockers = [
|
||||
blocker
|
||||
for path, infos in lock[mode].items()
|
||||
if localfs.path.overlaps(waiter_path, path)
|
||||
for blocker in (infos if isinstance(infos, list) else [infos])
|
||||
if blocker != info
|
||||
]
|
||||
non_existing_pid = set()
|
||||
|
||||
if not blockers:
|
||||
blockers = []
|
||||
to_release = defaultdict(list)
|
||||
for path, infos in lock[mode].items():
|
||||
for waiter_path in waiters:
|
||||
if localfs.path.overlaps(waiter_path, path):
|
||||
break
|
||||
else:
|
||||
continue
|
||||
|
||||
infos = infos if isinstance(infos, list) else [infos]
|
||||
for blocker in infos:
|
||||
if blocker == info:
|
||||
continue
|
||||
|
||||
pid = int(blocker["pid"])
|
||||
|
||||
if pid in non_existing_pid:
|
||||
pass
|
||||
elif psutil.pid_exists(pid):
|
||||
blockers.append(blocker)
|
||||
continue
|
||||
else:
|
||||
non_existing_pid.add(pid)
|
||||
cmd = blocker["cmd"]
|
||||
logger.warning(
|
||||
"Process '%s' with (Pid %s), in RWLock-file '%s'"
|
||||
" had been killed. Auto remove it from the lock file.",
|
||||
cmd,
|
||||
pid,
|
||||
relpath(path),
|
||||
)
|
||||
to_release[json.dumps(blocker, sort_keys=True)].append(path)
|
||||
|
||||
if to_release:
|
||||
for info_json, path_list in to_release.items():
|
||||
info = json.loads(info_json)
|
||||
if mode == "read":
|
||||
_release_read(lock, info, path_list)
|
||||
elif mode == "write":
|
||||
_release_write(lock, info, path_list)
|
||||
|
||||
if blockers:
|
||||
raise LockError(
|
||||
"'{path}' is busy, it is being blocked by:\n"
|
||||
"{blockers}\n"
|
||||
f"'{waiter_path}' is busy, it is being blocked by:\n"
|
||||
f"{_infos_to_str(blockers)}\n"
|
||||
"\n"
|
||||
"If there are no processes with such PIDs, you can manually "
|
||||
"remove '.dvc/tmp/rwlock' and try again.".format(
|
||||
path=waiter_path, blockers=_infos_to_str(blockers)
|
||||
)
|
||||
f"remove '{tmp_dir}/rwlock' and try again."
|
||||
)
|
||||
|
||||
|
||||
def _acquire_read(lock, info, paths):
|
||||
changes = []
|
||||
|
||||
lock["read"] = lock.get("read", defaultdict(list))
|
||||
|
||||
for path in paths:
|
||||
readers = lock["read"][path]
|
||||
if info in readers:
|
||||
@@ -115,6 +148,8 @@ def _acquire_read(lock, info, paths):
|
||||
def _acquire_write(lock, info, paths):
|
||||
changes = []
|
||||
|
||||
lock["write"] = lock.get("write", defaultdict(dict))
|
||||
|
||||
for path in paths:
|
||||
if lock["write"][path] == info:
|
||||
continue
|
||||
@@ -171,8 +206,10 @@ def rwlock(tmp_dir, fs, cmd, read, write, hardlink):
|
||||
|
||||
with _edit_rwlock(tmp_dir, fs, hardlink) as lock:
|
||||
|
||||
_check_blockers(lock, info, mode="write", waiters=read + write)
|
||||
_check_blockers(lock, info, mode="read", waiters=write)
|
||||
_check_blockers(
|
||||
tmp_dir, lock, info, mode="write", waiters=read + write
|
||||
)
|
||||
_check_blockers(tmp_dir, lock, info, mode="read", waiters=write)
|
||||
|
||||
rchanges = _acquire_read(lock, info, read)
|
||||
wchanges = _acquire_write(lock, info, write)
|
||||
|
||||
+4
-1
@@ -51,6 +51,7 @@ OUT_PSTAGE_DETAILED_SCHEMA = {
|
||||
Output.PARAM_PERSIST: bool,
|
||||
Output.PARAM_CHECKPOINT: bool,
|
||||
Output.PARAM_REMOTE: str,
|
||||
Output.PARAM_PUSH: bool,
|
||||
}
|
||||
}
|
||||
|
||||
@@ -103,7 +104,7 @@ def either_or(primary, fallback, fallback_includes=None):
|
||||
|
||||
|
||||
PLOT_DEFINITION = {
|
||||
Output.PARAM_PLOT_X: str,
|
||||
Output.PARAM_PLOT_X: Any(str, {str: str}),
|
||||
Output.PARAM_PLOT_Y: Any(str, [str], {str: Any(str, [str])}),
|
||||
Output.PARAM_PLOT_X_LABEL: str,
|
||||
Output.PARAM_PLOT_Y_LABEL: str,
|
||||
@@ -122,6 +123,8 @@ MULTI_STAGE_SCHEMA = {
|
||||
PLOTS: Any(SINGLE_PLOT_SCHEMA, [Any(str, SINGLE_PLOT_SCHEMA)]),
|
||||
STAGES: SINGLE_PIPELINE_STAGE_SCHEMA,
|
||||
VARS_KWD: VARS_SCHEMA,
|
||||
StageParams.PARAM_PARAMS: [str],
|
||||
StageParams.PARAM_METRICS: [str],
|
||||
}
|
||||
|
||||
COMPILED_SINGLE_STAGE_SCHEMA = Schema(SINGLE_STAGE_SCHEMA)
|
||||
|
||||
+34
-6
@@ -113,10 +113,11 @@ def restore_fields(stage):
|
||||
stage.meta = old.meta
|
||||
stage.desc = old.desc
|
||||
|
||||
old_fields = {out.def_path: (out.annot, out.remote) for out in old.outs}
|
||||
old_outs = {out.def_path: out for out in old.outs}
|
||||
for out in stage.outs:
|
||||
if out_fields := old_fields.get(out.def_path, None):
|
||||
out.annot, out.remote = out_fields
|
||||
old_out = old_outs.get(out.def_path, None)
|
||||
if old_out is not None:
|
||||
out.restore_fields(old_out)
|
||||
|
||||
|
||||
class Stage(params.StageParams):
|
||||
@@ -462,10 +463,12 @@ class Stage(params.StageParams):
|
||||
logger.debug("Computed %s md5: '%s'", self, m)
|
||||
return m
|
||||
|
||||
def save(self, allow_missing=False):
|
||||
def save(self, allow_missing: bool = False, merge_versioned: bool = False):
|
||||
self.save_deps(allow_missing=allow_missing)
|
||||
|
||||
self.save_outs(allow_missing=allow_missing)
|
||||
self.save_outs(
|
||||
allow_missing=allow_missing, merge_versioned=merge_versioned
|
||||
)
|
||||
self.md5 = self.compute_md5()
|
||||
|
||||
self.repo.stage_cache.save(self)
|
||||
@@ -480,15 +483,40 @@ class Stage(params.StageParams):
|
||||
if not allow_missing:
|
||||
raise
|
||||
|
||||
def save_outs(self, allow_missing=False):
|
||||
def save_outs(
|
||||
self, allow_missing: bool = False, merge_versioned: bool = False
|
||||
):
|
||||
from dvc.output import OutputDoesNotExistError
|
||||
|
||||
from .exceptions import StageFileDoesNotExistError, StageNotFound
|
||||
|
||||
if merge_versioned:
|
||||
try:
|
||||
old = self.reload()
|
||||
old_outs = {out.def_path: out for out in old.outs}
|
||||
merge_versioned = any(
|
||||
(
|
||||
out.files is not None
|
||||
or (
|
||||
out.meta is not None
|
||||
and out.meta.version_id is not None
|
||||
)
|
||||
)
|
||||
for out in old_outs.values()
|
||||
)
|
||||
except (StageFileDoesNotExistError, StageNotFound):
|
||||
merge_versioned = False
|
||||
|
||||
for out in self.outs:
|
||||
try:
|
||||
out.save()
|
||||
except OutputDoesNotExistError:
|
||||
if not (allow_missing or out.checkpoint):
|
||||
raise
|
||||
if merge_versioned:
|
||||
old_out = old_outs.get(out.def_path)
|
||||
if old_out is not None:
|
||||
out.merge_version_meta(old_out)
|
||||
|
||||
def ignore_outs(self):
|
||||
for out in self.outs:
|
||||
|
||||
+6
-4
@@ -180,7 +180,7 @@ class StageCache:
|
||||
dump_yaml(tmp, cache)
|
||||
self.repo.odb.local.move(tmp, path)
|
||||
|
||||
def restore(self, stage, run_cache=True, pull=False):
|
||||
def restore(self, stage, run_cache=True, pull=False, dry=False):
|
||||
from .serialize import to_single_stage_lockfile
|
||||
|
||||
if not _can_hash(stage):
|
||||
@@ -195,14 +195,15 @@ class StageCache:
|
||||
else:
|
||||
if not run_cache: # backward compatibility
|
||||
raise RunCacheNotFoundError(stage)
|
||||
stage.save_deps()
|
||||
if not dry:
|
||||
stage.save_deps()
|
||||
cache = self._load(stage)
|
||||
if not cache:
|
||||
raise RunCacheNotFoundError(stage)
|
||||
|
||||
cached_stage = self._create_stage(cache, wdir=stage.wdir)
|
||||
|
||||
if pull:
|
||||
if pull and not dry:
|
||||
for objs in cached_stage.get_used_objs().values():
|
||||
self.repo.cloud.pull(objs)
|
||||
|
||||
@@ -213,7 +214,8 @@ class StageCache:
|
||||
"Stage '%s' is cached - skipping run, checking out outputs",
|
||||
stage.addressing,
|
||||
)
|
||||
cached_stage.checkout()
|
||||
if not dry:
|
||||
cached_stage.checkout()
|
||||
|
||||
def transfer(self, from_odb, to_odb):
|
||||
from dvc.fs import HTTPFileSystem, LocalFileSystem
|
||||
|
||||
@@ -24,6 +24,9 @@ class StageLoader(Mapping):
|
||||
self.dvcfile = dvcfile
|
||||
self.data = data or {}
|
||||
self.stages_data = self.data.get("stages", {})
|
||||
self.metrics_data = self.data.get("metrics", [])
|
||||
self.params_data = self.data.get("params", [])
|
||||
self.plots_data = self.data.get("plots", {})
|
||||
self.repo = self.dvcfile.repo
|
||||
|
||||
lockfile_data = lockfile_data or {}
|
||||
@@ -171,6 +174,9 @@ class SingleStageLoader(Mapping):
|
||||
self.dvcfile = dvcfile
|
||||
self.stage_data = stage_data or {}
|
||||
self.stage_text = stage_text
|
||||
self.metrics_data = []
|
||||
self.params_data = []
|
||||
self.plots_data = {}
|
||||
|
||||
def __getitem__(self, item):
|
||||
if item:
|
||||
|
||||
+6
-4
@@ -139,14 +139,16 @@ def cmd_run(stage, dry=False, checkpoint_func=None, run_env=None):
|
||||
def run_stage(
|
||||
stage, dry=False, force=False, checkpoint_func=None, run_env=None, **kwargs
|
||||
):
|
||||
if not (dry or force or checkpoint_func):
|
||||
if not (force or checkpoint_func):
|
||||
from .cache import RunCacheNotFoundError
|
||||
|
||||
try:
|
||||
stage.repo.stage_cache.restore(stage, **kwargs)
|
||||
return
|
||||
stage.repo.stage_cache.restore(stage, dry=dry, **kwargs)
|
||||
if not dry:
|
||||
return
|
||||
except RunCacheNotFoundError:
|
||||
stage.save_deps()
|
||||
if not dry:
|
||||
stage.save_deps()
|
||||
|
||||
run = cmd_run if dry else unlocked_repo(cmd_run)
|
||||
run(stage, dry=dry, checkpoint_func=checkpoint_func, run_env=run_env)
|
||||
|
||||
@@ -29,6 +29,7 @@ PARAM_PERSIST = Output.PARAM_PERSIST
|
||||
PARAM_CHECKPOINT = Output.PARAM_CHECKPOINT
|
||||
PARAM_DESC = Annotation.PARAM_DESC
|
||||
PARAM_REMOTE = Output.PARAM_REMOTE
|
||||
PARAM_PUSH = Output.PARAM_PUSH
|
||||
|
||||
DEFAULT_PARAMS_FILE = ParamsDependency.DEFAULT_PARAMS_FILE
|
||||
|
||||
@@ -54,6 +55,8 @@ def _get_flags(out):
|
||||
yield from out.plot.items()
|
||||
if out.remote:
|
||||
yield PARAM_REMOTE, out.remote
|
||||
if not out.can_push:
|
||||
yield PARAM_PUSH, False
|
||||
|
||||
|
||||
def _serialize_out(out):
|
||||
|
||||
@@ -13,14 +13,22 @@ class TestAPI:
|
||||
assert api.get_url("foo") == expected_url
|
||||
|
||||
def test_open(self, tmp_dir, dvc, remote):
|
||||
tmp_dir.dvc_gen("foo", "foo-text")
|
||||
tmp_dir.dvc_gen(
|
||||
{
|
||||
"foo": "foo-text",
|
||||
"dir": {"bar": "bar-text"},
|
||||
}
|
||||
)
|
||||
dvc.push()
|
||||
|
||||
# Remove cache to force download
|
||||
remove(dvc.odb.local.path)
|
||||
|
||||
with api.open("foo") as fd:
|
||||
assert fd.read() == "foo-text"
|
||||
with api.open("foo") as fobj:
|
||||
assert fobj.read() == "foo-text"
|
||||
|
||||
with api.open("dir/bar") as fobj:
|
||||
assert fobj.read() == "bar-text"
|
||||
|
||||
@pytest.mark.parametrize(
|
||||
"clear_cache", [True, False], ids=["cache", "no_cache"]
|
||||
|
||||
+3
-1
@@ -270,7 +270,9 @@ class Console:
|
||||
|
||||
path = Path(file).resolve()
|
||||
url = (
|
||||
relpath(path) if "Microsoft" in uname().release else path.as_uri()
|
||||
relpath(path)
|
||||
if "microsoft" in uname().release.lower()
|
||||
else path.as_uri()
|
||||
)
|
||||
|
||||
opened = webbrowser.open(url)
|
||||
|
||||
+6
-2
@@ -54,8 +54,12 @@ def compose_and_dump(
|
||||
with initialize_config_dir(config_dir, version_base=None):
|
||||
cfg = compose(config_name=config_name, overrides=overrides)
|
||||
|
||||
dumper = DUMPERS[Path(output_file).suffix.lower()]
|
||||
dumper(output_file, OmegaConf.to_object(cfg))
|
||||
suffix = Path(output_file).suffix.lower()
|
||||
if suffix not in [".yml", ".yaml"]:
|
||||
dumper = DUMPERS[suffix]
|
||||
dumper(output_file, OmegaConf.to_object(cfg))
|
||||
else:
|
||||
Path(output_file).write_text(OmegaConf.to_yaml(cfg), encoding="utf-8")
|
||||
|
||||
|
||||
def apply_overrides(path: "StrPath", overrides: List[str]) -> None:
|
||||
|
||||
+6
-2
@@ -1,2 +1,6 @@
|
||||
def get_plot_id(plot_id: str, config_file_path: str = ""):
|
||||
return f"{config_file_path}::{plot_id}" if config_file_path else plot_id
|
||||
def get_plot_id(config_plot_id: str, config_file_path: str = ""):
|
||||
return (
|
||||
f"{config_file_path}::{config_plot_id}"
|
||||
if config_file_path
|
||||
else config_plot_id
|
||||
)
|
||||
|
||||
+11
-13
@@ -50,11 +50,11 @@ dependencies = [
|
||||
"rich>=10.13.0",
|
||||
"pyparsing>=2.4.7",
|
||||
"typing-extensions>=3.7.4",
|
||||
"scmrepo==0.1.3",
|
||||
"dvc-render==0.0.12",
|
||||
"dvc-task==0.1.5",
|
||||
"scmrepo==0.1.4",
|
||||
"dvc-render==0.0.14",
|
||||
"dvc-task==0.1.6",
|
||||
"dvclive>=1.0",
|
||||
"dvc-data==0.25.3",
|
||||
"dvc-data==0.28.3",
|
||||
"dvc-http==2.27.2",
|
||||
"hydra-core>=1.1.0",
|
||||
"iterative-telemetry==0.0.6",
|
||||
@@ -70,10 +70,10 @@ classifiers = [
|
||||
]
|
||||
|
||||
[project.optional-dependencies]
|
||||
azure = ["dvc-azure==2.20.4"]
|
||||
azure = ["dvc-azure==2.20.5"]
|
||||
gdrive = ["dvc-gdrive==2.19.1"]
|
||||
gs = ["dvc-gs==2.20.0"]
|
||||
hdfs = ["dvc-hdfs==2.19.0; python_version < '3.11'"]
|
||||
hdfs = ["dvc-hdfs==2.19.0"]
|
||||
oss = ["dvc-oss==2.19.0"]
|
||||
s3 = ["dvc-s3==2.21.0"]
|
||||
ssh = ["dvc-ssh==2.20.0"]
|
||||
@@ -98,12 +98,10 @@ tests = [
|
||||
"flaky==3.7.0",
|
||||
"pytest-timeout==2.1.0",
|
||||
"filelock==3.8.0",
|
||||
# optional dependencies
|
||||
"dvclive>=1.0",
|
||||
"pywin32>=225; sys_platform == 'win32'",
|
||||
"beautifulsoup4==4.11.1",
|
||||
"pywin32>=225; sys_platform == 'win32'", # optional dependency
|
||||
# pylint requirements
|
||||
"pylint==2.15.5",
|
||||
"pylint==2.15.7",
|
||||
# we use this to suppress pytest-related false positives in our tests.
|
||||
"pylint-pytest==1.1.2",
|
||||
# we use this to suppress some messages in tests, eg: foo/bar naming,
|
||||
@@ -111,9 +109,9 @@ tests = [
|
||||
"pylint-plugin-utils==0.7",
|
||||
# type-checking
|
||||
"mypy==0.990",
|
||||
"types-requests>=2.27.15",
|
||||
"types-tabulate>=0.8.6",
|
||||
"types-toml>=0.10.4",
|
||||
"types-requests",
|
||||
"types-tabulate",
|
||||
"types-toml",
|
||||
]
|
||||
all = ["dvc[azure,gdrive,gs,hdfs,oss,s3,ssh,webdav,webhdfs]"]
|
||||
dev = ["dvc[azure,gdrive,gs,hdfs,oss,s3,ssh,webdav,webhdfs,tests]"]
|
||||
|
||||
@@ -44,6 +44,10 @@ if args.pkg == "osxpkg":
|
||||
]
|
||||
)
|
||||
else:
|
||||
if args.pkg == "rpm":
|
||||
# https://github.com/jordansissel/fpm/issues/1503
|
||||
flags.extend(["--rpm-rpmbuild-define", "_build_id_links none"])
|
||||
|
||||
bash_dir = build / "etc" / "bash_completion.d"
|
||||
dirs = ["usr", "etc"]
|
||||
flags.extend(["--depends", "git >= 1.7.0"]) # needed for gitpython
|
||||
|
||||
@@ -0,0 +1 @@
|
||||
hiddenimports = ["win32timezone"]
|
||||
@@ -1,3 +1,4 @@
|
||||
import gc
|
||||
import json
|
||||
import os
|
||||
import sys
|
||||
@@ -259,3 +260,19 @@ def mock_hydra_conf(mocker):
|
||||
# NOTE: using sentinel here so that any imports from `hydra.conf`
|
||||
# return a mock.
|
||||
sys.modules["hydra.conf"] = mocker.sentinel
|
||||
|
||||
|
||||
@pytest.fixture(autouse=True)
|
||||
def gc_collect_on_dvc_close_on_win_311(mocker):
|
||||
if sys.version_info < (3, 11) and os.name != "nt":
|
||||
return
|
||||
|
||||
from dvc.repo import Repo
|
||||
|
||||
close = Repo.close
|
||||
|
||||
def wrapped(repo):
|
||||
close(repo)
|
||||
gc.collect()
|
||||
|
||||
mocker.patch("dvc.repo.Repo.close", wrapped)
|
||||
|
||||
@@ -38,7 +38,7 @@ def test_init_from_stash(tmp_dir, scm, dvc, machine_instance, mocker):
|
||||
|
||||
@pytest.mark.needs_internet
|
||||
@pytest.mark.parametrize("cloud", [pytest.lazy_fixture("git_ssh")])
|
||||
def test_init_git(tmp_dir, scm, cloud, mocker):
|
||||
def test_init_git(tmp_dir, dvc, scm, cloud, mocker):
|
||||
tmp_dir.scm_gen({"foo": "foo", "dir": {"bar": "bar"}}, commit="init")
|
||||
baseline_rev = scm.get_rev()
|
||||
tmp_dir.gen("foo", "stashed")
|
||||
@@ -59,7 +59,7 @@ def test_init_git(tmp_dir, scm, cloud, mocker):
|
||||
fs_factory=partial(_ssh_factory, cloud),
|
||||
)
|
||||
infofile = str((root_url / "foo.run").path)
|
||||
executor.init_git(scm, rev, mock, infofile=infofile)
|
||||
executor.init_git(dvc, scm, rev, mock, infofile=infofile)
|
||||
assert root_url.path == executor._repo_abspath
|
||||
|
||||
fs = cloud._ssh
|
||||
|
||||
@@ -2,12 +2,14 @@ import itertools
|
||||
import logging
|
||||
import os
|
||||
import stat
|
||||
from textwrap import dedent
|
||||
|
||||
import pytest
|
||||
from funcy import first
|
||||
|
||||
from dvc.dvcfile import PIPELINE_FILE
|
||||
from dvc.exceptions import ReproductionError
|
||||
from dvc.repo.experiments.exceptions import ExperimentExistsError
|
||||
from dvc.repo.experiments.queue.base import BaseStashQueue
|
||||
from dvc.repo.experiments.utils import exp_refs_by_rev
|
||||
from dvc.scm import resolve_rev
|
||||
@@ -43,8 +45,6 @@ def test_new_simple(tmp_dir, scm, dvc, exp_stage, mocker, name, workspace):
|
||||
|
||||
|
||||
def test_experiment_exists(tmp_dir, scm, dvc, exp_stage, mocker, workspace):
|
||||
from dvc.repo.experiments.exceptions import ExperimentExistsError
|
||||
|
||||
dvc.experiments.run(
|
||||
exp_stage.addressing,
|
||||
name="foo",
|
||||
@@ -428,22 +428,28 @@ def test_list(tmp_dir, scm, dvc, exp_stage):
|
||||
ref_info_b = first(exp_refs_by_rev(scm, exp_b))
|
||||
|
||||
tmp_dir.scm_gen("new", "new", commit="new")
|
||||
baseline_c = scm.get_rev()
|
||||
results = dvc.experiments.run(exp_stage.addressing, params=["foo=4"])
|
||||
exp_c = first(results)
|
||||
ref_info_c = first(exp_refs_by_rev(scm, exp_c))
|
||||
|
||||
assert dvc.experiments.ls() == {baseline_c: [ref_info_c.name]}
|
||||
assert dvc.experiments.ls() == {"master": [ref_info_c.name]}
|
||||
|
||||
exp_list = dvc.experiments.ls(rev=ref_info_a.baseline_sha)
|
||||
assert {key: set(val) for key, val in exp_list.items()} == {
|
||||
baseline_a: {ref_info_a.name, ref_info_b.name}
|
||||
baseline_a[:7]: {ref_info_a.name, ref_info_b.name}
|
||||
}
|
||||
|
||||
exp_list = dvc.experiments.ls(all_commits=True)
|
||||
assert {key: set(val) for key, val in exp_list.items()} == {
|
||||
baseline_a: {ref_info_a.name, ref_info_b.name},
|
||||
baseline_c: {ref_info_c.name},
|
||||
baseline_a[:7]: {ref_info_a.name, ref_info_b.name},
|
||||
"master": {ref_info_c.name},
|
||||
}
|
||||
|
||||
scm.checkout("branch", True)
|
||||
exp_list = dvc.experiments.ls(all_commits=True)
|
||||
assert {key: set(val) for key, val in exp_list.items()} == {
|
||||
baseline_a[:7]: {ref_info_a.name, ref_info_b.name},
|
||||
"branch": {ref_info_c.name},
|
||||
}
|
||||
|
||||
|
||||
@@ -676,3 +682,29 @@ def test_experiments_workspace_not_log_exception(caplog, dvc, scm):
|
||||
dvc.experiments.run()
|
||||
|
||||
assert not caplog.text
|
||||
|
||||
|
||||
def test_run_env(tmp_dir, dvc, scm):
|
||||
dump_run_env = dedent(
|
||||
"""\
|
||||
import os
|
||||
from dvc.env import DVC_EXP_BASELINE_REV, DVC_EXP_NAME
|
||||
with open("DVC_EXP_BASELINE_REV", "w") as f:
|
||||
f.write(os.environ.get(DVC_EXP_BASELINE_REV, ""))
|
||||
with open("DVC_EXP_NAME", "w") as f:
|
||||
f.write(os.environ.get(DVC_EXP_NAME, ""))
|
||||
"""
|
||||
)
|
||||
(tmp_dir / "dump_run_env.py").write_text(dump_run_env)
|
||||
baseline = scm.get_rev()
|
||||
dvc.stage.add(
|
||||
cmd="python dump_run_env.py",
|
||||
name="run_env",
|
||||
)
|
||||
dvc.experiments.run()
|
||||
assert (tmp_dir / "DVC_EXP_BASELINE_REV").read_text().strip() == baseline
|
||||
assert (tmp_dir / "DVC_EXP_NAME").read_text().strip() == ""
|
||||
|
||||
dvc.experiments.run(name="foo")
|
||||
assert (tmp_dir / "DVC_EXP_BASELINE_REV").read_text().strip() == baseline
|
||||
assert (tmp_dir / "DVC_EXP_NAME").read_text().strip() == "foo"
|
||||
|
||||
@@ -151,7 +151,6 @@ def test_list_remote(tmp_dir, scm, dvc, git_downstream, exp_stage, use_url):
|
||||
ref_info_b = first(exp_refs_by_rev(scm, exp_b))
|
||||
|
||||
tmp_dir.scm_gen("new", "new", commit="new")
|
||||
baseline_c = scm.get_rev()
|
||||
results = dvc.experiments.run(exp_stage.addressing, params=["foo=4"])
|
||||
exp_c = first(results)
|
||||
ref_info_c = first(exp_refs_by_rev(scm, exp_c))
|
||||
@@ -165,13 +164,13 @@ def test_list_remote(tmp_dir, scm, dvc, git_downstream, exp_stage, use_url):
|
||||
git_downstream.tmp_dir.scm.fetch_refspecs(remote, ["master:master"])
|
||||
exp_list = downstream_exp.ls(rev=baseline_a, git_remote=remote)
|
||||
assert {key: set(val) for key, val in exp_list.items()} == {
|
||||
baseline_a: {ref_info_a.name, ref_info_b.name}
|
||||
baseline_a[:7]: {ref_info_a.name, ref_info_b.name}
|
||||
}
|
||||
|
||||
exp_list = downstream_exp.ls(all_commits=True, git_remote=remote)
|
||||
assert {key: set(val) for key, val in exp_list.items()} == {
|
||||
baseline_a: {ref_info_a.name, ref_info_b.name},
|
||||
baseline_c: {ref_info_c.name},
|
||||
baseline_a[:7]: {ref_info_a.name, ref_info_b.name},
|
||||
"master": {ref_info_c.name},
|
||||
}
|
||||
|
||||
|
||||
|
||||
@@ -0,0 +1,85 @@
|
||||
from contextlib import nullcontext
|
||||
|
||||
import pytest
|
||||
from funcy import first
|
||||
|
||||
from dvc.repo.experiments.exceptions import ExperimentExistsError
|
||||
from dvc.repo.experiments.utils import exp_refs_by_rev
|
||||
from dvc.scm import resolve_rev
|
||||
from dvc.stage.exceptions import StageCommitError
|
||||
|
||||
|
||||
@pytest.mark.parametrize("name", (None, "test"))
|
||||
def test_exp_save(tmp_dir, dvc, scm, exp_stage, name):
|
||||
baseline = scm.get_rev()
|
||||
|
||||
exp = dvc.experiments.save(name=name)
|
||||
ref_info = first(exp_refs_by_rev(scm, exp))
|
||||
assert ref_info and ref_info.baseline_sha == baseline
|
||||
|
||||
exp_name = name if name else ref_info.name
|
||||
assert dvc.experiments.get_exact_name([exp])[exp] == exp_name
|
||||
assert resolve_rev(scm, exp_name) == exp
|
||||
|
||||
|
||||
@pytest.mark.parametrize(
|
||||
("force", "expected_raises"),
|
||||
(
|
||||
(False, pytest.raises(StageCommitError)),
|
||||
(True, nullcontext()),
|
||||
),
|
||||
)
|
||||
def test_exp_save_force(tmp_dir, dvc, scm, exp_stage, force, expected_raises):
|
||||
with open(tmp_dir / "copy.py", "a", encoding="utf-8") as fh:
|
||||
fh.write("\n# dummy change")
|
||||
|
||||
with expected_raises:
|
||||
dvc.experiments.save(force=force)
|
||||
|
||||
|
||||
def test_exp_save_overwrite_experiment(tmp_dir, dvc, scm, exp_stage):
|
||||
dvc.experiments.save(name="dummy")
|
||||
|
||||
with open(tmp_dir / "copy.py", "a", encoding="utf-8") as fh:
|
||||
fh.write("\n# dummy change")
|
||||
|
||||
with pytest.raises(ExperimentExistsError):
|
||||
dvc.experiments.save(name="dummy")
|
||||
|
||||
dvc.experiments.save(name="dummy", force=True)
|
||||
|
||||
|
||||
def test_exp_save_after_commit(tmp_dir, dvc, scm, exp_stage):
|
||||
baseline = scm.get_rev()
|
||||
dvc.experiments.save(name="exp-1")
|
||||
|
||||
tmp_dir.scm_gen({"new_file": "new_file"}, commit="new baseline")
|
||||
dvc.experiments.save(name="exp-2")
|
||||
|
||||
all_exps = dvc.experiments.ls(all_commits=True)
|
||||
assert all_exps[baseline[:7]] == ["exp-1"]
|
||||
assert all_exps["master"] == ["exp-2"]
|
||||
|
||||
|
||||
def test_exp_save_with_staged_changes(tmp_dir, dvc, scm):
|
||||
tmp_dir.gen({"new_file": "new_file"})
|
||||
scm.add("new_file")
|
||||
|
||||
dvc.experiments.save(name="exp")
|
||||
|
||||
_, _, unstaged = scm.status()
|
||||
assert "new_file" in unstaged
|
||||
|
||||
|
||||
def test_exp_save_include_untracked(tmp_dir, dvc, scm, exp_stage):
|
||||
new_file = tmp_dir / "new_file"
|
||||
for i in range(2):
|
||||
new_file.write_text(f"exp-{i}")
|
||||
dvc.experiments.save(name=f"exp-{i}", include_untracked=["new_file"])
|
||||
|
||||
_, _, unstaged = scm.status()
|
||||
assert "new_file" in unstaged
|
||||
assert new_file.read_text() == f"exp-{i}"
|
||||
|
||||
dvc.experiments.apply("exp-0")
|
||||
assert new_file.read_text() == "exp-0"
|
||||
@@ -10,15 +10,17 @@ from scmrepo.exceptions import SCMError
|
||||
|
||||
from dvc.cli import main
|
||||
from dvc.repo.experiments.executor.base import (
|
||||
EXEC_PID_DIR,
|
||||
EXEC_TMP_DIR,
|
||||
BaseExecutor,
|
||||
ExecutorInfo,
|
||||
TaskStatus,
|
||||
)
|
||||
from dvc.repo.experiments.queue.base import QueueEntry
|
||||
from dvc.repo.experiments.refs import CELERY_STASH, ExpRefInfo
|
||||
from dvc.repo.experiments.utils import exp_refs_by_rev
|
||||
from dvc.repo.experiments.utils import (
|
||||
EXEC_PID_DIR,
|
||||
EXEC_TMP_DIR,
|
||||
exp_refs_by_rev,
|
||||
)
|
||||
from dvc.utils import relpath
|
||||
from dvc.utils.fs import makedirs
|
||||
from dvc.utils.serialize import YAMLFileCorruptedError
|
||||
|
||||
@@ -1,6 +1,10 @@
|
||||
import json
|
||||
from os.path import join
|
||||
|
||||
import pytest
|
||||
|
||||
from dvc.cli import main
|
||||
from dvc.utils import relpath
|
||||
|
||||
|
||||
def test_metrics_diff_simple(tmp_dir, scm, dvc, run_copy_metrics):
|
||||
@@ -206,3 +210,28 @@ def test_metrics_diff_non_metrics(tmp_dir, scm, dvc):
|
||||
assert result == {
|
||||
"some_file.yaml": {"foo": {"old": 1, "new": 3, "diff": 2}}
|
||||
}
|
||||
|
||||
|
||||
@pytest.mark.parametrize(
|
||||
"dvcfile, metrics_file",
|
||||
[
|
||||
("dvc.yaml", "my_metrics.yaml"),
|
||||
("dir/dvc.yaml", "my_metrics.yaml"),
|
||||
("dir/dvc.yaml", join("..", "my_metrics.yaml")),
|
||||
],
|
||||
)
|
||||
def test_diff_top_level_metrics(tmp_dir, dvc, scm, dvcfile, metrics_file):
|
||||
directory = (tmp_dir / dvcfile).parent
|
||||
directory.mkdir(exist_ok=True)
|
||||
(tmp_dir / dvcfile).dump({"metrics": [metrics_file]})
|
||||
|
||||
metrics_file = directory / metrics_file
|
||||
metrics_file.dump({"foo": 3})
|
||||
scm.add_commit([metrics_file, tmp_dir / dvcfile], message="add metrics")
|
||||
|
||||
metrics_file.dump({"foo": 5})
|
||||
assert dvc.metrics.diff() == {
|
||||
relpath(directory / metrics_file): {
|
||||
"foo": {"diff": 2, "new": 5, "old": 3}
|
||||
}
|
||||
}
|
||||
|
||||
@@ -1,3 +1,5 @@
|
||||
from os.path import join
|
||||
|
||||
import pytest
|
||||
|
||||
from dvc.utils import relpath
|
||||
@@ -241,3 +243,28 @@ def test_diff_without_targets_specified(tmp_dir, dvc, scm, file):
|
||||
"y": {"new": "100", "old": None},
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
@pytest.mark.parametrize(
|
||||
"dvcfile, params_file",
|
||||
[
|
||||
("dvc.yaml", "my_params.yaml"),
|
||||
("dir/dvc.yaml", "my_params.yaml"),
|
||||
("dir/dvc.yaml", join("..", "my_params.yaml")),
|
||||
],
|
||||
)
|
||||
def test_diff_top_level_params(tmp_dir, dvc, scm, dvcfile, params_file):
|
||||
directory = (tmp_dir / dvcfile).parent
|
||||
directory.mkdir(exist_ok=True)
|
||||
(tmp_dir / dvcfile).dump({"params": [params_file]})
|
||||
|
||||
params_file = directory / params_file
|
||||
params_file.dump({"foo": 3})
|
||||
scm.add_commit([params_file, tmp_dir / dvcfile], message="add params")
|
||||
|
||||
params_file.dump({"foo": 5})
|
||||
assert dvc.params.diff() == {
|
||||
relpath(directory / params_file): {
|
||||
"foo": {"diff": 2, "new": 5, "old": 3}
|
||||
}
|
||||
}
|
||||
|
||||
@@ -6,6 +6,7 @@ import pytest
|
||||
from dvc.dependency import _merge_params
|
||||
from dvc.parsing import DEFAULT_PARAMS_FILE, DataResolver
|
||||
from dvc.parsing.context import recurse_not_a_node
|
||||
from dvc.parsing.interpolate import escape_str
|
||||
|
||||
from . import (
|
||||
CONTEXT_DATA,
|
||||
@@ -272,14 +273,17 @@ def test_cmd_dict(tmp_dir, dvc, bool_config, list_config):
|
||||
if list_config:
|
||||
conf["parsing"]["list"] = list_config
|
||||
|
||||
string = "spaced string"
|
||||
mixed_quote_string = "quote\"'d"
|
||||
data = {
|
||||
"dict": {
|
||||
"foo": "foo",
|
||||
"bar": 2,
|
||||
"string": "spaced string",
|
||||
"string": string,
|
||||
"mixed_quote_string": mixed_quote_string,
|
||||
"bool": True,
|
||||
"bool-false": False,
|
||||
"list": [1, 2, "foo"],
|
||||
"list": [1, 2, "foo", mixed_quote_string],
|
||||
"nested": {"foo": "foo"},
|
||||
}
|
||||
}
|
||||
@@ -296,9 +300,10 @@ def test_cmd_dict(tmp_dir, dvc, bool_config, list_config):
|
||||
bool_resolved = " --bool --no-bool-false"
|
||||
|
||||
if list_config is None or list_config == "nargs":
|
||||
list_resolved = " --list 1 2 'foo'"
|
||||
list_resolved = f" --list 1 2 foo {escape_str(mixed_quote_string)}"
|
||||
else:
|
||||
list_resolved = " --list 1 --list 2 --list 'foo'"
|
||||
list_resolved = " --list 1 --list 2 --list foo"
|
||||
list_resolved += f" --list {escape_str(mixed_quote_string)}"
|
||||
|
||||
assert_stage_equal(
|
||||
resolver.resolve(),
|
||||
@@ -306,11 +311,12 @@ def test_cmd_dict(tmp_dir, dvc, bool_config, list_config):
|
||||
"stages": {
|
||||
"stage1": {
|
||||
"cmd": "python script.py"
|
||||
" --foo 'foo' --bar 2"
|
||||
" --string 'spaced string'"
|
||||
" --foo foo --bar 2"
|
||||
f" --string {escape_str(string)}"
|
||||
f" --mixed_quote_string {escape_str(mixed_quote_string)}"
|
||||
f"{bool_resolved}"
|
||||
f"{list_resolved}"
|
||||
" --nested.foo 'foo'"
|
||||
" --nested.foo foo"
|
||||
}
|
||||
}
|
||||
},
|
||||
|
||||
@@ -336,16 +336,15 @@ def test_collect_non_existing_dir(tmp_dir, dvc, run_copy_metrics):
|
||||
@pytest.mark.parametrize(
|
||||
"plot_config,expected_datafiles",
|
||||
[
|
||||
# TODO - enable providing data files for x
|
||||
# (
|
||||
# {
|
||||
# "comparison": {
|
||||
# "x": {"data1.json": "a"},
|
||||
# "y": {"sub/dir/data2.json": "b"},
|
||||
# }
|
||||
# },
|
||||
# ["data1.json", os.path.join("sub", "dir", "data2.json")],
|
||||
# ),
|
||||
(
|
||||
{
|
||||
"comparison": {
|
||||
"x": {"data1.json": "a"},
|
||||
"y": {"sub/dir/data2.json": "b"},
|
||||
}
|
||||
},
|
||||
["data1.json", os.path.join("sub", "dir", "data2.json")],
|
||||
),
|
||||
(
|
||||
{"data1.json": {"x": "c", "y": "a", "title": "File as key test"}},
|
||||
["data1.json"],
|
||||
|
||||
@@ -304,7 +304,7 @@ def test_pull_imported_directory_stage(tmp_dir, dvc, erepo_dir):
|
||||
dvc.imp(os.fspath(erepo_dir), "dir", "dir_imported")
|
||||
|
||||
remove("dir_imported")
|
||||
remove(dvc.odb.local.path)
|
||||
dvc.odb.local.clear()
|
||||
|
||||
dvc.pull(["dir_imported.dvc"])
|
||||
|
||||
@@ -320,7 +320,7 @@ def test_pull_wildcard_imported_directory_stage(tmp_dir, dvc, erepo_dir):
|
||||
dvc.imp(os.fspath(erepo_dir), "dir123", "dir_imported123")
|
||||
|
||||
remove("dir_imported123")
|
||||
remove(dvc.odb.local.path)
|
||||
dvc.odb.local.clear()
|
||||
|
||||
dvc.pull(["dir_imported*.dvc"], glob=True)
|
||||
|
||||
@@ -546,9 +546,8 @@ def test_pull_imported_stage_from_subrepos(
|
||||
dvc.imp(os.fspath(erepo_dir), path, out="out")
|
||||
|
||||
# clean everything
|
||||
remove(dvc.odb.local.path)
|
||||
dvc.odb.local.clear()
|
||||
remove("out")
|
||||
makedirs(dvc.odb.local.path)
|
||||
|
||||
stats = dvc.pull(["out.dvc"])
|
||||
|
||||
@@ -633,7 +632,7 @@ def test_chained_import(tmp_dir, dvc, make_tmp_dir, erepo_dir, local_cloud):
|
||||
assert (dst / "foo").read_text() == "foo"
|
||||
assert (dst / "bar").read_text() == "bar"
|
||||
|
||||
remove(dvc.odb.local.path)
|
||||
dvc.odb.local.clear()
|
||||
remove("dir_imported")
|
||||
|
||||
# pulled objects should come from the original upstream repo's remote,
|
||||
|
||||
@@ -33,7 +33,7 @@ def test_restore(tmp_dir, dvc, run_copy, mocker):
|
||||
|
||||
(stage,) = dvc.reproduce("copy-foo-bar")
|
||||
|
||||
mock_restore.assert_called_once_with(stage)
|
||||
mock_restore.assert_called_once_with(stage, dry=False)
|
||||
mock_run.assert_not_called()
|
||||
assert (tmp_dir / "bar").exists() and not (tmp_dir / "foo").unlink()
|
||||
assert (tmp_dir / PIPELINE_LOCK).exists()
|
||||
@@ -100,7 +100,7 @@ def test_memory_for_multiple_runs_of_same_stage(
|
||||
assert (tmp_dir / PIPELINE_LOCK).exists()
|
||||
assert (tmp_dir / "bar").read_text() == "foobar"
|
||||
mock_run.assert_not_called()
|
||||
mock_restore.assert_called_once_with(stage)
|
||||
mock_restore.assert_called_once_with(stage, dry=False)
|
||||
mock_restore.reset_mock()
|
||||
|
||||
(tmp_dir / PIPELINE_LOCK).unlink()
|
||||
@@ -109,7 +109,7 @@ def test_memory_for_multiple_runs_of_same_stage(
|
||||
|
||||
assert (tmp_dir / "bar").read_text() == "foo"
|
||||
mock_run.assert_not_called()
|
||||
mock_restore.assert_called_once_with(stage)
|
||||
mock_restore.assert_called_once_with(stage, dry=False)
|
||||
assert (tmp_dir / "bar").exists() and not (tmp_dir / "foo").unlink()
|
||||
assert (tmp_dir / PIPELINE_LOCK).exists()
|
||||
|
||||
@@ -138,7 +138,7 @@ def test_memory_runs_of_multiple_stages(tmp_dir, dvc, run_copy, mocker):
|
||||
assert (tmp_dir / "foo.bak").read_text() == "foo"
|
||||
assert (tmp_dir / PIPELINE_LOCK).exists()
|
||||
mock_run.assert_not_called()
|
||||
mock_restore.assert_called_once_with(stage)
|
||||
mock_restore.assert_called_once_with(stage, dry=False)
|
||||
mock_restore.reset_mock()
|
||||
|
||||
(stage,) = dvc.reproduce("backup-bar")
|
||||
@@ -146,7 +146,7 @@ def test_memory_runs_of_multiple_stages(tmp_dir, dvc, run_copy, mocker):
|
||||
assert (tmp_dir / "bar.bak").read_text() == "bar"
|
||||
assert (tmp_dir / PIPELINE_LOCK).exists()
|
||||
mock_run.assert_not_called()
|
||||
mock_restore.assert_called_once_with(stage)
|
||||
mock_restore.assert_called_once_with(stage, dry=False)
|
||||
|
||||
|
||||
def test_restore_pull(tmp_dir, dvc, run_copy, mocker, local_remote):
|
||||
@@ -168,7 +168,7 @@ def test_restore_pull(tmp_dir, dvc, run_copy, mocker, local_remote):
|
||||
|
||||
(stage,) = dvc.reproduce("copy-foo-bar", pull=True)
|
||||
|
||||
mock_restore.assert_called_once_with(stage, pull=True)
|
||||
mock_restore.assert_called_once_with(stage, pull=True, dry=False)
|
||||
mock_run.assert_not_called()
|
||||
assert mock_checkout.call_count == 2
|
||||
assert (tmp_dir / "bar").exists() and not (tmp_dir / "foo").unlink()
|
||||
|
||||
@@ -51,3 +51,16 @@ def test_from_gitfs_when_pwd_not_in_root(
|
||||
|
||||
with wdir.chdir():
|
||||
assert dvc.used_objs([target], revs=[scm.get_rev()])
|
||||
|
||||
|
||||
def test_used_objs_push(tmp_dir, scm, dvc):
|
||||
stage = tmp_dir.dvc_gen("foo", "foo")[0]
|
||||
hash_info = stage.outs[0].hash_info
|
||||
|
||||
stage.outs[0].can_push = True
|
||||
assert stage.get_used_objs(push=False) == {None: {hash_info}}
|
||||
assert stage.get_used_objs(push=True) == {None: {hash_info}}
|
||||
|
||||
stage.outs[0].can_push = False
|
||||
assert stage.get_used_objs(push=False) == {None: {hash_info}}
|
||||
assert stage.get_used_objs(push=True) == {}
|
||||
|
||||
@@ -174,12 +174,25 @@ def test_compose_and_dump(tmp_dir, suffix, overrides, expected):
|
||||
from dvc.utils.hydra import compose_and_dump
|
||||
|
||||
config_name = "config"
|
||||
config_dir = hydra_setup(tmp_dir, "conf", "config")
|
||||
output_file = tmp_dir / f"params.{suffix}"
|
||||
config_dir = hydra_setup(tmp_dir, "conf", "config")
|
||||
compose_and_dump(output_file, config_dir, config_name, overrides)
|
||||
assert output_file.parse() == expected
|
||||
|
||||
|
||||
@pytest.mark.skipif(sys.version_info >= (3, 11), reason="unsupported on 3.11")
|
||||
def test_compose_and_dump_yaml_handles_string(tmp_dir):
|
||||
"""Regression test for 8583"""
|
||||
from dvc.utils.hydra import compose_and_dump
|
||||
|
||||
config = tmp_dir / "conf" / "config.yaml"
|
||||
config.parent.mkdir()
|
||||
config.write_text("foo: 'no'\n")
|
||||
output_file = tmp_dir / "params.yaml"
|
||||
compose_and_dump(output_file, str(config.parent), "config", [])
|
||||
assert output_file.read_text() == "foo: 'no'\n"
|
||||
|
||||
|
||||
@pytest.mark.parametrize(
|
||||
"overrides, expected",
|
||||
[
|
||||
|
||||
@@ -456,9 +456,7 @@ def test_repo_with_config_plots(tmp_dir, capsys, repo_with_config_plots):
|
||||
"dvc.yaml::confusion_train_vs_test",
|
||||
],
|
||||
)
|
||||
assert html_result["dvc.yaml::linear_train_vs_test"]["data"][
|
||||
"values"
|
||||
] == _update_datapoints(
|
||||
ble = _update_datapoints(
|
||||
plots["data"]["linear_train.json"],
|
||||
{
|
||||
REVISION_FIELD: "linear_train.json",
|
||||
@@ -470,4 +468,7 @@ def test_repo_with_config_plots(tmp_dir, capsys, repo_with_config_plots):
|
||||
},
|
||||
)
|
||||
|
||||
assert (
|
||||
html_result["dvc.yaml::linear_train_vs_test"]["data"]["values"] == ble
|
||||
)
|
||||
# TODO check json results once vscode is able to handle flexible plots
|
||||
|
||||
@@ -16,6 +16,7 @@ from dvc.commands.experiments.pull import CmdExperimentsPull
|
||||
from dvc.commands.experiments.push import CmdExperimentsPush
|
||||
from dvc.commands.experiments.remove import CmdExperimentsRemove
|
||||
from dvc.commands.experiments.run import CmdExperimentsRun
|
||||
from dvc.commands.experiments.save import CmdExperimentsSave
|
||||
from dvc.commands.experiments.show import CmdExperimentsShow, show_experiments
|
||||
from dvc.exceptions import InvalidArgumentError
|
||||
from dvc.repo import Repo
|
||||
@@ -934,3 +935,17 @@ def test_show_experiments_pcp(tmp_dir, mocker):
|
||||
|
||||
assert kwargs["output_path"] == str(tmp_dir / "dvc_plots" / "index.html")
|
||||
assert kwargs["color_by"] == "Experiment"
|
||||
|
||||
|
||||
def test_experiments_save(dvc, scm, mocker):
|
||||
cli_args = parse_args(["exp", "save", "--name", "exp-name", "--force"])
|
||||
assert cli_args.func == CmdExperimentsSave
|
||||
|
||||
cmd = cli_args.func(cli_args)
|
||||
m = mocker.patch("dvc.repo.experiments.save.save", return_value="acabb")
|
||||
|
||||
assert cmd.run() == 0
|
||||
|
||||
m.assert_called_once_with(
|
||||
cmd.repo, name="exp-name", force=True, include_untracked=[]
|
||||
)
|
||||
|
||||
@@ -178,7 +178,7 @@ def test_plots_diff_open(tmp_dir, dvc, mocker, capsys, plots_data, auto_open):
|
||||
def test_plots_diff_open_WSL(tmp_dir, dvc, mocker, plots_data):
|
||||
mocked_open = mocker.patch("webbrowser.open", return_value=True)
|
||||
mocked_uname_result = mocker.MagicMock()
|
||||
mocked_uname_result.release = "Microsoft"
|
||||
mocked_uname_result.release = "microsoft"
|
||||
mocker.patch("platform.uname", return_value=mocked_uname_result)
|
||||
|
||||
cli_args = parse_args(
|
||||
|
||||
@@ -81,7 +81,7 @@ def test_status_empty(dvc, mocker, capsys):
|
||||
|
||||
cmd = cli_args.func(cli_args)
|
||||
|
||||
spy = mocker.spy(cmd.repo.stage, "_collect_repo")
|
||||
spy = mocker.spy(cmd.repo.stage, "_collect_all_from_repo")
|
||||
|
||||
assert cmd.run() == 0
|
||||
|
||||
@@ -108,7 +108,10 @@ def test_status_up_to_date(dvc, mocker, capsys, cloud_opts, expected_message):
|
||||
mocker.patch.dict(cmd.repo.config, {"core": {"remote": "default"}})
|
||||
mocker.patch.object(cmd.repo, "status", autospec=True, return_value={})
|
||||
mocker.patch.object(
|
||||
cmd.repo.stage, "_collect_repo", return_value=[object()], autospec=True
|
||||
cmd.repo.stage,
|
||||
"_collect_all_from_repo",
|
||||
return_value=[[object()], {}, {}, {}],
|
||||
autospec=True,
|
||||
)
|
||||
|
||||
assert cmd.run() == 0
|
||||
|
||||
@@ -3,10 +3,9 @@ from dvc.render.converter.image import ImageConverter
|
||||
|
||||
|
||||
def test_image_converter_no_out():
|
||||
data = b"content"
|
||||
converter = ImageConverter()
|
||||
|
||||
datapoints, _ = converter.convert(data, "r", "image.png")
|
||||
data = {"image.png": b"content"}
|
||||
converter = ImageConverter("image.png", data)
|
||||
datapoints, _ = converter.flat_datapoints("r")
|
||||
|
||||
assert datapoints[0] == {
|
||||
REVISION_FIELD: "r",
|
||||
@@ -16,10 +15,10 @@ def test_image_converter_no_out():
|
||||
|
||||
|
||||
def test_image_converter_with_out(tmp_dir):
|
||||
data = b"content"
|
||||
converter = ImageConverter({"out": tmp_dir / "foo"})
|
||||
data = {"image.png": b"content"}
|
||||
converter = ImageConverter("image.png", data, {"out": tmp_dir / "foo"})
|
||||
|
||||
datapoints, _ = converter.convert(data, "r", "image.png")
|
||||
datapoints, _ = converter.flat_datapoints("r")
|
||||
|
||||
assert datapoints[0] == {
|
||||
REVISION_FIELD: "r",
|
||||
@@ -32,10 +31,10 @@ def test_image_converter_with_out(tmp_dir):
|
||||
|
||||
def test_image_converter_with_slash_in_revision(tmp_dir):
|
||||
"""Regression test for #7934"""
|
||||
data = b"content"
|
||||
converter = ImageConverter({"out": tmp_dir / "foo"})
|
||||
data = {"image.png": b"content"}
|
||||
converter = ImageConverter("image.png", data, {"out": tmp_dir / "foo"})
|
||||
|
||||
datapoints, _ = converter.convert(data, "feature/r", "image.png")
|
||||
datapoints, _ = converter.flat_datapoints("feature/r")
|
||||
|
||||
assert datapoints[0] == {
|
||||
REVISION_FIELD: "feature/r",
|
||||
|
||||
@@ -111,6 +111,8 @@ def test_match_renderers(mocker):
|
||||
"title": "config_file_1::plot_id_1",
|
||||
"x": "x",
|
||||
"y": "y",
|
||||
"x_label": "x",
|
||||
"y_label": "y",
|
||||
}
|
||||
|
||||
|
||||
|
||||
@@ -2,39 +2,9 @@ from collections import OrderedDict
|
||||
|
||||
import pytest
|
||||
|
||||
from dvc.exceptions import DvcException
|
||||
from dvc.render import VERSION_FIELD
|
||||
from dvc.render.converter.vega import (
|
||||
FieldsNotFoundError,
|
||||
PlotDataStructureError,
|
||||
VegaConverter,
|
||||
_filter_fields,
|
||||
_find_first_list,
|
||||
_lists,
|
||||
)
|
||||
|
||||
|
||||
def test_find_first_list_in_dict():
|
||||
m1 = [{"accuracy": 1, "loss": 2}, {"accuracy": 3, "loss": 4}]
|
||||
m2 = [{"x": 1}, {"x": 2}]
|
||||
dmetric = OrderedDict([("t1", m1), ("t2", m2)])
|
||||
|
||||
assert _find_first_list(dmetric, fields=set()) == m1
|
||||
assert _find_first_list(dmetric, fields={"x"}) == m2
|
||||
|
||||
with pytest.raises(PlotDataStructureError):
|
||||
_find_first_list(dmetric, fields={"foo"})
|
||||
|
||||
|
||||
def test_filter_fields():
|
||||
m = [{"accuracy": 1, "loss": 2}, {"accuracy": 3, "loss": 4}]
|
||||
|
||||
assert _filter_fields(m, fields=set()) == m
|
||||
|
||||
expected = [{"accuracy": 1}, {"accuracy": 3}]
|
||||
assert _filter_fields(m, fields={"accuracy"}) == expected
|
||||
|
||||
with pytest.raises(FieldsNotFoundError):
|
||||
_filter_fields(m, fields={"bad_field"})
|
||||
from dvc.render.converter.vega import VegaConverter, _lists
|
||||
|
||||
|
||||
@pytest.mark.parametrize(
|
||||
@@ -58,7 +28,7 @@ def test_finding_lists(dictionary, expected_result):
|
||||
"input_data,properties,expected_datapoints,expected_properties",
|
||||
[
|
||||
pytest.param(
|
||||
{"metric": [{"v": 1}, {"v": 2}]},
|
||||
{"f": {"metric": [{"v": 1}, {"v": 2}]}},
|
||||
{},
|
||||
[
|
||||
{
|
||||
@@ -80,41 +50,11 @@ def test_finding_lists(dictionary, expected_result):
|
||||
},
|
||||
},
|
||||
],
|
||||
{"x": "step", "y": "v"},
|
||||
{"x": "step", "y": "v", "x_label": "step", "y_label": "v"},
|
||||
id="default_x_y",
|
||||
),
|
||||
pytest.param(
|
||||
{"metric": [{"v": 1, "v2": 0.1}, {"v": 2, "v2": 0.2}]},
|
||||
{"fields": {"v"}},
|
||||
[
|
||||
{
|
||||
"v": 1,
|
||||
"step": 0,
|
||||
VERSION_FIELD: {
|
||||
"revision": "r",
|
||||
"filename": "f",
|
||||
"field": "v",
|
||||
},
|
||||
},
|
||||
{
|
||||
"v": 2,
|
||||
"step": 1,
|
||||
VERSION_FIELD: {
|
||||
"revision": "r",
|
||||
"filename": "f",
|
||||
"field": "v",
|
||||
},
|
||||
},
|
||||
],
|
||||
{
|
||||
"x": "step",
|
||||
"y": "v",
|
||||
"fields": {"v", "step"},
|
||||
},
|
||||
id="filter_fields",
|
||||
),
|
||||
pytest.param(
|
||||
{"metric": [{"v": 1, "v2": 0.1}, {"v": 2, "v2": 0.2}]},
|
||||
{"f": {"metric": [{"v": 1, "v2": 0.1}, {"v": 2, "v2": 0.2}]}},
|
||||
{"x": "v", "y": "v2"},
|
||||
[
|
||||
{
|
||||
@@ -136,52 +76,24 @@ def test_finding_lists(dictionary, expected_result):
|
||||
},
|
||||
},
|
||||
],
|
||||
{"x": "v", "y": "v2"},
|
||||
{"x": "v", "y": "v2", "x_label": "v", "y_label": "v2"},
|
||||
id="choose_x_y",
|
||||
),
|
||||
pytest.param(
|
||||
{
|
||||
"metric": [
|
||||
{"v": 1, "v2": 0.1, "v3": 0.01, "v4": 0.001},
|
||||
{"v": 2, "v2": 0.2, "v3": 0.02, "v4": 0.002},
|
||||
]
|
||||
},
|
||||
{"x": "v3", "y": "v4", "fields": {"v"}},
|
||||
[
|
||||
{
|
||||
"v": 1,
|
||||
"v3": 0.01,
|
||||
"v4": 0.001,
|
||||
VERSION_FIELD: {
|
||||
"revision": "r",
|
||||
"filename": "f",
|
||||
"field": "v4",
|
||||
"f": {
|
||||
"some": "noise",
|
||||
"very": {
|
||||
"nested": {
|
||||
"metric": [
|
||||
{"v": 1, "v2": 0.1},
|
||||
{"v": 2, "v2": 0.2},
|
||||
]
|
||||
}
|
||||
},
|
||||
},
|
||||
{
|
||||
"v": 2,
|
||||
"v3": 0.02,
|
||||
"v4": 0.002,
|
||||
VERSION_FIELD: {
|
||||
"revision": "r",
|
||||
"filename": "f",
|
||||
"field": "v4",
|
||||
},
|
||||
},
|
||||
],
|
||||
{"x": "v3", "y": "v4", "fields": {"v", "v3", "v4"}},
|
||||
id="append_x_y_to_fields",
|
||||
),
|
||||
pytest.param(
|
||||
{
|
||||
"some": "noise",
|
||||
"very": {
|
||||
"nested": {
|
||||
"metric": [{"v": 1, "v2": 0.1}, {"v": 2, "v2": 0.2}]
|
||||
}
|
||||
},
|
||||
}
|
||||
},
|
||||
{"x": "v", "y": "v2"},
|
||||
{"x": "v", "y": "v2", "x_label": "x", "y_label": "y"},
|
||||
[
|
||||
{
|
||||
"v": 1,
|
||||
@@ -202,24 +114,135 @@ def test_finding_lists(dictionary, expected_result):
|
||||
},
|
||||
},
|
||||
],
|
||||
{"x": "v", "y": "v2"},
|
||||
{"x": "v", "y": "v2", "x_label": "x", "y_label": "y"},
|
||||
id="find_in_nested_structure",
|
||||
),
|
||||
pytest.param(
|
||||
{"metric": [{"v": 1, "v2": 0.1}, {"v": 2, "v2": 0.2}]},
|
||||
{"f": {"metric": [{"v": 1, "v2": 0.1}, {"v": 2, "v2": 0.2}]}},
|
||||
{"y": {"f": ["v", "v2"]}},
|
||||
[
|
||||
{
|
||||
"v": 1,
|
||||
"v2": 0.1,
|
||||
VERSION_FIELD: {
|
||||
"revision": "r",
|
||||
"filename": "f",
|
||||
"field": "v",
|
||||
},
|
||||
"dvc_inferred_y_value": 1,
|
||||
"v": 1,
|
||||
"v2": 0.1,
|
||||
"step": 0,
|
||||
},
|
||||
{
|
||||
VERSION_FIELD: {
|
||||
"revision": "r",
|
||||
"filename": "f",
|
||||
"field": "v",
|
||||
},
|
||||
"dvc_inferred_y_value": 2,
|
||||
"v": 2,
|
||||
"v2": 0.2,
|
||||
"step": 1,
|
||||
},
|
||||
{
|
||||
VERSION_FIELD: {
|
||||
"revision": "r",
|
||||
"filename": "f",
|
||||
"field": "v2",
|
||||
},
|
||||
"dvc_inferred_y_value": 0.1,
|
||||
"v2": 0.1,
|
||||
"v": 1,
|
||||
"step": 0,
|
||||
},
|
||||
{
|
||||
VERSION_FIELD: {
|
||||
"revision": "r",
|
||||
"filename": "f",
|
||||
"field": "v2",
|
||||
},
|
||||
"v": 2,
|
||||
"v2": 0.2,
|
||||
"dvc_inferred_y_value": 0.2,
|
||||
"step": 1,
|
||||
},
|
||||
],
|
||||
{
|
||||
"x": "step",
|
||||
"y": "dvc_inferred_y_value",
|
||||
"y_label": "y",
|
||||
"x_label": "step",
|
||||
},
|
||||
id="y_def_list",
|
||||
),
|
||||
pytest.param(
|
||||
{
|
||||
"f": {
|
||||
"metric": [{"v": 1}, {"v": 2}],
|
||||
"other_metric": [{"z": 3}, {"z": 4}],
|
||||
}
|
||||
},
|
||||
{"y": {"f": ["v", "z"]}},
|
||||
[
|
||||
{
|
||||
"dvc_inferred_y_value": 1,
|
||||
"z": 3,
|
||||
"v": 1,
|
||||
"step": 0,
|
||||
VERSION_FIELD: {
|
||||
"revision": "r",
|
||||
"filename": "f",
|
||||
"field": "v",
|
||||
},
|
||||
},
|
||||
{
|
||||
"dvc_inferred_y_value": 2,
|
||||
"z": 4,
|
||||
"step": 1,
|
||||
"v": 2,
|
||||
VERSION_FIELD: {
|
||||
"revision": "r",
|
||||
"filename": "f",
|
||||
"field": "v",
|
||||
},
|
||||
},
|
||||
{
|
||||
"dvc_inferred_y_value": 3,
|
||||
"v": 1,
|
||||
"z": 3,
|
||||
"step": 0,
|
||||
VERSION_FIELD: {
|
||||
"revision": "r",
|
||||
"filename": "f",
|
||||
"field": "z",
|
||||
},
|
||||
},
|
||||
{
|
||||
"dvc_inferred_y_value": 4,
|
||||
"v": 2,
|
||||
"z": 4,
|
||||
"step": 1,
|
||||
VERSION_FIELD: {
|
||||
"revision": "r",
|
||||
"filename": "f",
|
||||
"field": "z",
|
||||
},
|
||||
},
|
||||
],
|
||||
{
|
||||
"x": "step",
|
||||
"y": "dvc_inferred_y_value",
|
||||
"y_label": "y",
|
||||
"x_label": "step",
|
||||
},
|
||||
id="multi_source_json",
|
||||
),
|
||||
pytest.param(
|
||||
{
|
||||
"f": {"metric": [{"v": 1, "v2": 0.1}, {"v": 2, "v2": 0.2}]},
|
||||
"f2": {"metric": [{"v": 3, "v2": 0.3}]},
|
||||
},
|
||||
{"x": "v", "y": {"f": "v2", "f2": "v2"}},
|
||||
[
|
||||
{
|
||||
"v": 1,
|
||||
"v2": 0.1,
|
||||
@@ -228,19 +251,6 @@ def test_finding_lists(dictionary, expected_result):
|
||||
"filename": "f",
|
||||
"field": "v2",
|
||||
},
|
||||
"dvc_inferred_y_value": 0.1,
|
||||
"step": 0,
|
||||
},
|
||||
{
|
||||
"v": 2,
|
||||
"v2": 0.2,
|
||||
VERSION_FIELD: {
|
||||
"revision": "r",
|
||||
"filename": "f",
|
||||
"field": "v",
|
||||
},
|
||||
"dvc_inferred_y_value": 2,
|
||||
"step": 1,
|
||||
},
|
||||
{
|
||||
"v": 2,
|
||||
@@ -250,12 +260,19 @@ def test_finding_lists(dictionary, expected_result):
|
||||
"filename": "f",
|
||||
"field": "v2",
|
||||
},
|
||||
"dvc_inferred_y_value": 0.2,
|
||||
"step": 1,
|
||||
},
|
||||
{
|
||||
"v": 3,
|
||||
"v2": 0.3,
|
||||
VERSION_FIELD: {
|
||||
"revision": "r",
|
||||
"filename": "f2",
|
||||
"field": "v2",
|
||||
},
|
||||
},
|
||||
],
|
||||
{"x": "step", "y": "dvc_inferred_y_value", "y_label": "y"},
|
||||
id="y_def_list",
|
||||
{"x": "v", "y": "v2", "x_label": "v", "y_label": "v2"},
|
||||
id="multi_file_json",
|
||||
),
|
||||
],
|
||||
)
|
||||
@@ -265,32 +282,67 @@ def test_convert(
|
||||
expected_datapoints,
|
||||
expected_properties,
|
||||
):
|
||||
converter = VegaConverter(properties)
|
||||
datapoints, resolved_properties = converter.convert(
|
||||
data=input_data, revision="r", filename="f"
|
||||
)
|
||||
converter = VegaConverter("f", input_data, properties)
|
||||
datapoints, resolved_properties = converter.flat_datapoints("r")
|
||||
|
||||
assert datapoints == expected_datapoints
|
||||
assert resolved_properties == expected_properties
|
||||
|
||||
|
||||
def test_convert_skip_step():
|
||||
converter = VegaConverter()
|
||||
converter.skip_step("append_index")
|
||||
converter.skip_step("generate_y")
|
||||
@pytest.mark.parametrize(
|
||||
"input_data,properties",
|
||||
[
|
||||
pytest.param(
|
||||
{
|
||||
"f": {
|
||||
"metric": [
|
||||
{"v": 1},
|
||||
{"v": 2},
|
||||
]
|
||||
},
|
||||
"f2": {"metric": [{"v2": 0.1}]},
|
||||
},
|
||||
{"x": {"f": "v"}, "y": {"f2": "v2"}},
|
||||
id="unequal_datapoints",
|
||||
),
|
||||
pytest.param(
|
||||
{
|
||||
"f": {
|
||||
"metric": [
|
||||
{"v": 1, "v2": 0.1},
|
||||
{"v": 2, "v2": 0.2},
|
||||
]
|
||||
},
|
||||
"f2": {
|
||||
"metric": [
|
||||
{"v": 3, "v2": 0.3},
|
||||
]
|
||||
},
|
||||
},
|
||||
{"x": {"f": "v", "f2": "v3"}, "y": {"f": "v2"}},
|
||||
id="unequal_x_y",
|
||||
),
|
||||
],
|
||||
)
|
||||
def test_convert_fail(input_data, properties):
|
||||
converter = VegaConverter("f", input_data, properties)
|
||||
with pytest.raises(DvcException):
|
||||
converter.flat_datapoints("r")
|
||||
|
||||
datapoints, resolved_properties = converter.convert(
|
||||
data={"a": "b", "metric": [{"v": 1}, {"v": 2}]},
|
||||
revision="r",
|
||||
filename="f",
|
||||
)
|
||||
|
||||
assert datapoints == [
|
||||
{
|
||||
"v": 1,
|
||||
},
|
||||
{
|
||||
"v": 2,
|
||||
},
|
||||
]
|
||||
assert resolved_properties == {"x": "step", "y": "v"}
|
||||
@pytest.mark.parametrize(
|
||||
"properties,label",
|
||||
[
|
||||
({"x": {"actual.csv": "actual"}}, "actual"),
|
||||
(
|
||||
{"x": {"train_actual.csv": "actual", "val_actual.csv": "actual"}},
|
||||
"actual",
|
||||
),
|
||||
(
|
||||
{"x": {"actual.csv": "actual", "predicted.csv": "predicted"}},
|
||||
"x",
|
||||
),
|
||||
],
|
||||
)
|
||||
def test_infer_x_label(properties, label):
|
||||
assert VegaConverter.infer_x_label(properties) == label
|
||||
|
||||
+60
-16
@@ -2,11 +2,12 @@ import time
|
||||
|
||||
import pytest
|
||||
from celery import shared_task
|
||||
from flaky.flaky_decorator import flaky
|
||||
from celery.result import AsyncResult
|
||||
|
||||
from dvc.exceptions import DvcException
|
||||
from dvc.repo.experiments.exceptions import UnresolvedExpNamesError
|
||||
from dvc.repo.experiments.queue.base import QueueDoneResult
|
||||
from dvc.repo.experiments.queue.exceptions import CannotKillTasksError
|
||||
|
||||
|
||||
def test_shutdown_no_tasks(test_queue, mocker):
|
||||
@@ -51,16 +52,14 @@ def test_shutdown_with_kill(test_queue, mocker):
|
||||
shutdown_spy.assert_called_once()
|
||||
|
||||
|
||||
# pytest-celery worker thread may finish the task before we check for PENDING
|
||||
@flaky(max_runs=3, min_passes=1)
|
||||
def test_post_run_after_kill(test_queue):
|
||||
|
||||
from celery import chain
|
||||
|
||||
sig_bar = test_queue.proc.run_signature(
|
||||
["python3", "-c", "import time; time.sleep(5)"], name="bar"
|
||||
["python3", "-c", "import time; time.sleep(10)"], name="bar"
|
||||
)
|
||||
result_bar = sig_bar.freeze()
|
||||
sig_bar.freeze()
|
||||
sig_foo = _foo.s()
|
||||
result_foo = sig_foo.freeze()
|
||||
run_chain = chain(sig_bar, sig_foo)
|
||||
@@ -69,25 +68,28 @@ def test_post_run_after_kill(test_queue):
|
||||
timeout = time.time() + 10
|
||||
|
||||
while True:
|
||||
if result_bar.status == "STARTED" or result_bar.ready():
|
||||
try:
|
||||
test_queue.proc.kill("bar")
|
||||
assert result_foo.status == "PENDING"
|
||||
break
|
||||
except ProcessLookupError:
|
||||
time.sleep(0.1)
|
||||
if time.time() > timeout:
|
||||
raise AssertionError()
|
||||
|
||||
assert result_foo.status == "PENDING"
|
||||
test_queue.proc.kill("bar")
|
||||
raise TimeoutError()
|
||||
|
||||
assert result_foo.get(timeout=10) == "foo"
|
||||
|
||||
|
||||
def test_celery_queue_kill(test_queue, mocker):
|
||||
|
||||
mock_entry = mocker.Mock(stash_rev=_foo.name)
|
||||
mock_entry_foo = mocker.Mock(stash_rev="foo")
|
||||
mock_entry_bar = mocker.Mock(stash_rev="bar")
|
||||
mock_entry_foobar = mocker.Mock(stash_rev="foobar")
|
||||
|
||||
mocker.patch.object(
|
||||
test_queue,
|
||||
"iter_active",
|
||||
return_value={mock_entry},
|
||||
return_value={mock_entry_foo, mock_entry_bar, mock_entry_foobar},
|
||||
)
|
||||
mocker.patch.object(
|
||||
test_queue,
|
||||
@@ -100,12 +102,54 @@ def test_celery_queue_kill(test_queue, mocker):
|
||||
mocker.patch.object(
|
||||
test_queue,
|
||||
"match_queue_entry_by_name",
|
||||
return_value={"bar": mock_entry},
|
||||
return_value={
|
||||
"bar": mock_entry_bar,
|
||||
"foo": mock_entry_foo,
|
||||
"foobar": mock_entry_foobar,
|
||||
},
|
||||
)
|
||||
mocker.patch.object(
|
||||
test_queue,
|
||||
"_get_running_task_ids",
|
||||
return_value={"foo", "foobar"},
|
||||
)
|
||||
mocker.patch.object(
|
||||
test_queue,
|
||||
"_iter_processed",
|
||||
return_value=[
|
||||
(mocker.Mock(headers={"id": "foo"}), mock_entry_foo),
|
||||
(mocker.Mock(headers={"id": "bar"}), mock_entry_bar),
|
||||
(mocker.Mock(headers={"id": "foobar"}), mock_entry_foobar),
|
||||
],
|
||||
)
|
||||
mocker.patch.object(
|
||||
AsyncResult,
|
||||
"ready",
|
||||
return_value=False,
|
||||
)
|
||||
mark_mocker = mocker.patch.object(
|
||||
test_queue.celery.backend,
|
||||
"mark_as_failure",
|
||||
)
|
||||
|
||||
spy = mocker.patch.object(test_queue.proc, "kill")
|
||||
test_queue.kill("bar")
|
||||
assert spy.called_once_with(mock_entry.stash_rev)
|
||||
def kill_function(rev):
|
||||
if rev == "foo":
|
||||
return True
|
||||
raise ProcessLookupError
|
||||
|
||||
kill_mock = mocker.patch.object(
|
||||
test_queue.proc,
|
||||
"kill",
|
||||
side_effect=mocker.MagicMock(side_effect=kill_function),
|
||||
)
|
||||
with pytest.raises(
|
||||
CannotKillTasksError, match="Task 'foobar' is initializing,"
|
||||
):
|
||||
test_queue.kill(["bar", "foo", "foobar"])
|
||||
assert kill_mock.called_once_with(mock_entry_foo.stash_rev)
|
||||
assert kill_mock.called_once_with(mock_entry_bar.stash_rev)
|
||||
assert kill_mock.called_once_with(mock_entry_foobar.stash_rev)
|
||||
mark_mocker.assert_called_once_with("bar", None)
|
||||
|
||||
|
||||
@pytest.mark.parametrize("status", ["FAILURE", "SUCCESS"])
|
||||
@@ -1,7 +1,13 @@
|
||||
import pytest
|
||||
from funcy import first
|
||||
from scmrepo.git import Git
|
||||
|
||||
from dvc.repo.experiments.show import get_names
|
||||
from dvc.repo.experiments.show import (
|
||||
ExpStatus,
|
||||
get_branch_names,
|
||||
move_properties_to_head,
|
||||
update_names,
|
||||
)
|
||||
|
||||
|
||||
def test_get_show_branch(tmp_dir, scm: "Git", dvc, exp_stage):
|
||||
@@ -21,7 +27,192 @@ def test_get_show_branch(tmp_dir, scm: "Git", dvc, exp_stage):
|
||||
baseline: {"baseline": {"data": {}}, exp_a: {"data": {}}},
|
||||
}
|
||||
|
||||
get_names(dvc, result)
|
||||
branch_names = get_branch_names(scm, ["workspace", exp_a, baseline])
|
||||
assert branch_names == {exp_a: new_branch, baseline: base_branch}
|
||||
|
||||
update_names(dvc, branch_names, result)
|
||||
assert result[exp_a]["baseline"]["data"] == {"name": new_branch}
|
||||
assert result[baseline]["baseline"]["data"] == {"name": base_branch}
|
||||
assert result[baseline][exp_a]["data"] == {"name": new_branch}
|
||||
|
||||
|
||||
@pytest.mark.parametrize(
|
||||
"res_in,res_out",
|
||||
[
|
||||
(
|
||||
{
|
||||
"1": {
|
||||
"data": {
|
||||
"checkpoint_tip": "1",
|
||||
"executor": None,
|
||||
"status": ExpStatus.Success.name,
|
||||
}
|
||||
},
|
||||
"2": {
|
||||
"data": {
|
||||
"checkpoint_tip": "1",
|
||||
"executor": "local",
|
||||
"status": ExpStatus.Running.name,
|
||||
"name": "a",
|
||||
}
|
||||
},
|
||||
"3": {
|
||||
"data": {
|
||||
"checkpoint_tip": "3",
|
||||
"executor": None,
|
||||
"status": ExpStatus.Success.name,
|
||||
}
|
||||
},
|
||||
"4": {
|
||||
"data": {
|
||||
"checkpoint_tip": "3",
|
||||
"executor": "local",
|
||||
"status": ExpStatus.Running.name,
|
||||
"name": "b",
|
||||
}
|
||||
},
|
||||
},
|
||||
{
|
||||
"1": {
|
||||
"data": {
|
||||
"checkpoint_tip": "1",
|
||||
"executor": "local",
|
||||
"status": ExpStatus.Running.name,
|
||||
"name": "a",
|
||||
}
|
||||
},
|
||||
"2": {
|
||||
"data": {
|
||||
"checkpoint_tip": "1",
|
||||
"executor": None,
|
||||
"status": ExpStatus.Success.name,
|
||||
}
|
||||
},
|
||||
"3": {
|
||||
"data": {
|
||||
"checkpoint_tip": "3",
|
||||
"executor": "local",
|
||||
"status": ExpStatus.Running.name,
|
||||
"name": "b",
|
||||
}
|
||||
},
|
||||
"4": {
|
||||
"data": {
|
||||
"checkpoint_tip": "3",
|
||||
"executor": None,
|
||||
"status": ExpStatus.Success.name,
|
||||
}
|
||||
},
|
||||
},
|
||||
),
|
||||
(
|
||||
{
|
||||
"0": {"error": {"msg": "something"}},
|
||||
"1": {
|
||||
"data": {
|
||||
"checkpoint_tip": "1",
|
||||
"executor": None,
|
||||
"status": ExpStatus.Success.name,
|
||||
}
|
||||
},
|
||||
"2": {
|
||||
"data": {
|
||||
"checkpoint_tip": "1",
|
||||
"executor": "local",
|
||||
"status": ExpStatus.Running.name,
|
||||
"name": "a",
|
||||
}
|
||||
},
|
||||
"3": {"data": {"name": "b"}},
|
||||
},
|
||||
{
|
||||
"0": {"error": {"msg": "something"}},
|
||||
"1": {
|
||||
"data": {
|
||||
"checkpoint_tip": "1",
|
||||
"executor": "local",
|
||||
"status": ExpStatus.Running.name,
|
||||
"name": "a",
|
||||
}
|
||||
},
|
||||
"2": {
|
||||
"data": {
|
||||
"checkpoint_tip": "1",
|
||||
"executor": None,
|
||||
"status": ExpStatus.Success.name,
|
||||
}
|
||||
},
|
||||
"3": {"data": {"name": "b"}},
|
||||
},
|
||||
),
|
||||
(
|
||||
{
|
||||
"1": {
|
||||
"data": {
|
||||
"checkpoint_tip": "1",
|
||||
"executor": None,
|
||||
"status": ExpStatus.Success.name,
|
||||
}
|
||||
},
|
||||
"2": {
|
||||
"data": {
|
||||
"checkpoint_tip": "1",
|
||||
"executor": "local",
|
||||
"status": ExpStatus.Running.name,
|
||||
"name": "a",
|
||||
}
|
||||
},
|
||||
"3": {
|
||||
"data": {
|
||||
"checkpoint_tip": "1",
|
||||
"executor": "local",
|
||||
"status": ExpStatus.Running.name,
|
||||
"name": "b",
|
||||
}
|
||||
},
|
||||
"4": {
|
||||
"data": {
|
||||
"checkpoint_tip": "1",
|
||||
"executor": "local",
|
||||
"status": ExpStatus.Running.name,
|
||||
}
|
||||
},
|
||||
},
|
||||
{
|
||||
"1": {
|
||||
"data": {
|
||||
"checkpoint_tip": "1",
|
||||
"executor": "local",
|
||||
"status": ExpStatus.Running.name,
|
||||
"name": "a",
|
||||
}
|
||||
},
|
||||
"2": {
|
||||
"data": {
|
||||
"checkpoint_tip": "1",
|
||||
"executor": None,
|
||||
"status": ExpStatus.Success.name,
|
||||
}
|
||||
},
|
||||
"3": {
|
||||
"data": {
|
||||
"checkpoint_tip": "1",
|
||||
"executor": None,
|
||||
"status": ExpStatus.Success.name,
|
||||
"name": "b",
|
||||
}
|
||||
},
|
||||
"4": {
|
||||
"data": {
|
||||
"checkpoint_tip": "1",
|
||||
"executor": None,
|
||||
"status": ExpStatus.Success.name,
|
||||
}
|
||||
},
|
||||
},
|
||||
),
|
||||
],
|
||||
)
|
||||
def test_move_properties_to_head(res_in, res_out):
|
||||
move_properties_to_head({"baseline": res_in})
|
||||
assert res_in == res_out
|
||||
|
||||
@@ -13,9 +13,9 @@ from dvc.stage.run import run_stage
|
||||
(["mycmd1 arg1", "mycmd2 arg2"], ["> mycmd1 arg1", "> mycmd2 arg2"]),
|
||||
],
|
||||
)
|
||||
def test_run_stage_dry(caplog, cmd, expected):
|
||||
def test_run_stage_dry(caplog, dvc, cmd, expected):
|
||||
with caplog.at_level(level=logging.INFO, logger="dvc"):
|
||||
stage = Stage(None, "stage.dvc", cmd=cmd)
|
||||
stage = Stage(dvc, "stage.dvc", cmd=cmd)
|
||||
run_stage(stage, dry=True)
|
||||
|
||||
expected.insert(0, "Running stage 'stage.dvc':")
|
||||
|
||||
@@ -1,3 +1,4 @@
|
||||
import json
|
||||
import os
|
||||
|
||||
import pytest
|
||||
@@ -105,3 +106,37 @@ def test_broken_rwlock(tmp_path):
|
||||
with pytest.raises(RWLockFileCorruptedError):
|
||||
with _edit_rwlock(dir_path, localfs, False):
|
||||
pass
|
||||
|
||||
|
||||
@pytest.mark.parametrize("return_value", [True, False])
|
||||
def test_corrupted_rwlock(tmp_path, mocker, return_value):
|
||||
dir_path = os.fspath(tmp_path)
|
||||
path = tmp_path / "rwlock"
|
||||
|
||||
foo = "foo"
|
||||
bar = "bar"
|
||||
cmd_foo = "cmd_foo"
|
||||
cmd_bar = "cmd_bar"
|
||||
mocker.patch("psutil.pid_exists", return_value=return_value)
|
||||
|
||||
corrupted_rwlock = {
|
||||
"write": {foo: {"pid": 1234, "cmd": cmd_foo}},
|
||||
"read": {
|
||||
foo: [{"pid": 5555, "cmd": cmd_foo}],
|
||||
bar: [
|
||||
{"pid": 6666, "cmd": cmd_bar},
|
||||
{"pid": 7777, "cmd": cmd_bar},
|
||||
],
|
||||
},
|
||||
}
|
||||
|
||||
path.write_text(json.dumps(corrupted_rwlock), encoding="utf-8")
|
||||
|
||||
if return_value:
|
||||
with pytest.raises(LockError):
|
||||
with rwlock(dir_path, localfs, "cmd_other", [], [foo, bar], False):
|
||||
pass
|
||||
else:
|
||||
with rwlock(dir_path, localfs, "cmd_other", [], [foo, bar], False):
|
||||
pass
|
||||
assert path.read_text() == """{"read": {}}"""
|
||||
|
||||
Reference in New Issue
Block a user