Compare commits

...
81 Commits
Author SHA1 Message Date
Ruslan Kuprieiev 2a888970e8 build: fpm: don't double quote cli option
Leftover from #8611
2022-11-24 01:34:18 +02:00
Ruslan Kuprieiev 73fdfc8059 build: fpm: don't create .build-id/* files
These are leaking into our rpm packages.

Related https://github.com/iterative/dvc-s3-repo/issues/86
2022-11-24 01:02:44 +02:00
Ruslan Kuprieiev 8dc11417d2 testing: api: test opening a file in subdir
Related to #8420
2022-11-23 17:47:13 +02:00
b02855fb93 ui: Fix WSL check in open_browser (#8604)
* ui: Fix WSL check in `open_browser`

* Update dvc/ui/__init__.py

Co-authored-by: Peter Rowlands (변기호) <[email protected]>

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

Co-authored-by: Peter Rowlands (변기호) <[email protected]>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
2022-11-23 09:57:57 +00:00
Peter Rowlands af255a46b4 worktree: use progress bars in push/fetch 2022-11-23 13:05:51 +09:00
Peter Rowlands 2748492f6b worktree push: don't push existing versions 2022-11-23 13:05:51 +09:00
Peter Rowlands c69d3188a6 deps: bump dvc-data to 0.28.0 2022-11-22 19:04:18 +09:00
karajan1001 9b9c04e633 Solve the problem during executor running
fix #7693

The problem was when we gathered experiments, and at the same time,
the executor are creating new commits. It will make the checkpoint
top/head return by `get_running_exps`/`get_ref`/`branch_revs` not the
same one. And cause the problem described in #7693

To solve this we did
1. move the `get_rev` to the beginning of `exp show` to make sure the
   return results in `branch_revs`
2. Add a new function to move all of the properties that only belong to
   `head` of the checkpoint from the wrong place to the top.
3. Add a new unit test for it.
4. Force fetch_running_exp to return data.
5. fix a bug in tmp_dir_executor.
2022-11-22 17:44:55 +08:00
karajan1001 350e0fb1f7 queue kill: we can manually mark problematic tasks as failure
fix: #8461
fix: #8473
For now, for those inactive but uncompleted tasks, they still shown as
Running in `exp show` and `task queue`, we cannot remove them because
they are regarded as running, we cann't kill them because their are no
real process behind them.

1. Now we can examine these false running tasks and mark them as failure
   in `queue kill` command. #8461
2. Better msg handle for initliaizing tasks in `queue kill`#8473
3. Add new unit tests for both cases.
4. bump into new dvc-task 0.1.6
2022-11-22 13:33:23 +08:00
dberenbaum f14358bc72 plots: add test for default x label 2022-11-21 21:05:12 +01:00
David de la Iglesia Castro 705bc6ec82 Added test_infer_x_label 2022-11-21 21:05:12 +01:00
dberenbaum 61a02e6f56 plots: set default x label 2022-11-21 21:05:12 +01:00
Saugat Pachhai (सौगात) 8e5226ece0 cli: remove version action 2022-11-21 20:37:05 +05:45
Peter Rowlands 2a1af0b880 add: merge existing file meta for versioned dirs 2022-11-21 19:18:41 +09:00
Peter Rowlands 014d149512 out: move restore_fields logic into Output 2022-11-21 19:18:41 +09:00
Peter Rowlands 77ae4aa92e deps: bump dvc-azure to 2.20.5 2022-11-21 18:21:02 +09:00
Peter Rowlands 588471a811 deps: bump dvc-data to 0.27.0 2022-11-21 18:21:02 +09:00
dependabot[bot] e59c19e752 build(deps-dev): Bump dvc-render from 0.0.13 to 0.0.14
Bumps [dvc-render](https://github.com/iterative/dvc-render) from 0.0.13 to 0.0.14.
- [Release notes](https://github.com/iterative/dvc-render/releases)
- [Commits](https://github.com/iterative/dvc-render/compare/0.0.13...0.0.14)

---
updated-dependencies:
- dependency-name: dvc-render
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-11-21 10:08:09 +01:00
David de la Iglesia CastroandDave Berenbaum b0a92414fa hydra: Use OmegaConf.to_yaml for dumping .yaml output. (#8587)
* hydra: Use `OmegaConf.to_yaml` for dumping `.yaml` output.

Combining `OmegaConf.to_object` with our yaml DUMPER (ruaml.yaml) was not correctly handling strings like 'no'.

`OmegaConf.to_yaml` uses a custom string representer that correctly handles those cases.

Fixes #8583

* Update dvc/utils/hydra.py

Co-authored-by: Dave Berenbaum <[email protected]>

Co-authored-by: Dave Berenbaum <[email protected]>
2022-11-19 12:37:18 +00:00
Peter Rowlands dae500d7c7 worktree: use view instead of full index in push/fetch 2022-11-19 09:55:58 +09:00
Peter Rowlands a01bc2918e push/fetch: move worktree logic into repo.worktree 2022-11-19 09:55:58 +09:00
David de la Iglesia Castro a33bbc97d5 parsing: Escape str interpolation in dict unpacking.
Use subprocess.list2cmdline (windows) / shlex.quote

Closes #8203
Closes #8370
2022-11-18 20:00:16 +01:00
Paweł Redzyński ba2e8bdac7 plots: data conversion: adjust for viewer backend (#8421)
* plots: vega: converter: support multi series data split and props inference

Fixes: #7754, #8399
Related: iterative/studio#4369

* plots: converter: make converter infer x and y labels if not provided

* plots: vega: converter: roll back to datapoints format

* plots: vega: converter: refactor

* plots: infer labels on

* plots: get_plot_id: fix naming

* plots: vega: converter: notes regarding converting
2022-11-18 12:36:00 +00:00
Peter Rowlands 4d6e045989 status -c: exclude push: false outs 2022-11-18 16:32:29 +09:00
Peter Rowlands 00eea4560e import-url: default to push: false for cloud-versioned imports 2022-11-18 16:32:29 +09:00
Peter Rowlands 6e02dddabd output: check push in get_used_objs 2022-11-18 16:32:29 +09:00
Peter Rowlands b550c5e625 output: add PARAM_PUSH 2022-11-18 16:32:29 +09:00
Ruslan KuprieievandPeter Rowlands b36861ada9 tests: import: use odb.clear()
Co-authored-by: Peter Rowlands <[email protected]>
2022-11-17 10:56:01 +02:00
Ruslan Kuprieiev d482e26c99 deps: bump dvc-data to 0.26.0 2022-11-17 10:56:01 +02:00
dependabot[bot] a8ad59ae4e build(deps-dev): Bump dvc-render from 0.0.12 to 0.0.13
Bumps [dvc-render](https://github.com/iterative/dvc-render) from 0.0.12 to 0.0.13.
- [Release notes](https://github.com/iterative/dvc-render/releases)
- [Commits](https://github.com/iterative/dvc-render/compare/0.0.12...0.0.13)

---
updated-dependencies:
- dependency-name: dvc-render
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-11-16 11:13:05 +01:00
Ivan Shcheklein 76cc649f5e fix/8550+: cover with test 2022-11-16 15:16:37 +05:45
Ivan Shcheklein d52e1aa17b fix: exp list ref heads handling 2022-11-16 15:16:37 +05:45
Saugat Pachhai (सौगात) 65f61acffa tests: garbage collect sqlite connections on Windows + Python 3.11
There seems to be a regression in Python 3.11, where the sqlite
connections are not deallocated, due to some internal changes in
Python 3.11, where they are now using LRU cache. They are not deallocated
until `gc.collect()` is not called.

See https://github.com/python/cpython/issues/97641.
This affects only Windows, because when we try to remove the tempdir for
the exp run, the sqlite connection is open which prevents us from
deleting that folder.

Although this may happen in real scenario in `exp run`, I am only fixing
the tests by mocking `dvc.close()` and extending it by calling
`gc.collect()` after it. We could also mock `State.close()` but didnot
want to mock something that is not in dvc itself.

The `diskcache` uses threadlocal for connections, so they are expected
to be garbage collected, and therefore does not provide a good way to
close the connections. The only API it offers is `self.close()` and that
only closes main thread's connection. If we had access to connection,
an easier way would have been to explicitly call `conn.close()`.
But we don''t have such option at the moment.

Related: https://github.com/iterative/dvc/pull/8404#issuecomment-1310024661
GHA Failure: https://github.com/iterative/dvc/actions/runs/3437324559/jobs/5731929385#step:5:57
2022-11-16 08:02:43 +05:45
Peter Rowlands fdc689954f pyinstaller: drop google-api-client hooks 2022-11-15 22:07:05 +09:00
Peter Rowlands 076c48532d deps: bump dvc-gdrive to 2.19.1 2022-11-15 22:07:05 +09:00
David de la Iglesia Castro e4ea463c73 hydra: Raise error when name and sweeps. 2022-11-14 21:34:55 +01:00
Saugat Pachhai (सौगात) 87d8269365 typecheck: fix type error in _git_info 2022-11-14 10:21:31 +05:45
Peter Rowlands a753ee215f output: fix get_entry dep object generation for imports 2022-11-13 14:41:21 +02:00
dependabot[bot] 014a38fae2 build(deps-dev): Bump iterative-telemetry from 0.0.5 to 0.0.6
Bumps [iterative-telemetry](https://github.com/iterative/telemetry-python) from 0.0.5 to 0.0.6.
- [Release notes](https://github.com/iterative/telemetry-python/releases)
- [Commits](https://github.com/iterative/telemetry-python/compare/0.0.5...0.0.6)

---
updated-dependencies:
- dependency-name: iterative-telemetry
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-11-11 14:54:07 +09:00
Peter Rowlands 8913f5a6fe mypy: allow implicit-optional 2022-11-11 14:17:17 +09:00
dependabot[bot] 4ce9825c2b build(deps-dev): Bump mypy from 0.982 to 0.990
Bumps [mypy](https://github.com/python/mypy) from 0.982 to 0.990.
- [Release notes](https://github.com/python/mypy/releases)
- [Commits](https://github.com/python/mypy/compare/v0.982...v0.990)

---
updated-dependencies:
- dependency-name: mypy
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-11-11 14:17:17 +09:00
dependabot[bot] e9c5b5fa84 build(deps-dev): Bump dvc-gs from 2.19.1 to 2.20.0
Bumps [dvc-gs](https://github.com/iterative/dvc-gs) from 2.19.1 to 2.20.0.
- [Release notes](https://github.com/iterative/dvc-gs/releases)
- [Commits](https://github.com/iterative/dvc-gs/compare/2.19.1...2.20.0)

---
updated-dependencies:
- dependency-name: dvc-gs
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-11-11 13:33:10 +09:00
karajan1001 fa54c1af7c Solve run_all flaky tests
1. Modify run all to include currently running exps.
2. bump dvc-task to 0.1.5
2022-11-11 07:04:43 +05:45
karajan1001 9fbbfd07a6 Fix some celery queue realted ci failure
fix: #8403
1. remove some of the flaky mark
2. In `get_result` make sure the celery task is completed.
2022-11-11 07:04:43 +05:45
karajan1001 929de7c651 Solve the crash on getting name of applied experiment branch
fix: #8526
1. The current `get_names` will crash if an experiment branch had
   already been given a new branch name to it.

1. Solve the crash when we getting the name of a newly fixed experiment
   branch.
2. Add a new unit test to it.
2022-11-10 13:18:45 +08:00
blakeNaccarato 49af6e1435 plots: support svg
Add SVG to parser and parametrize an existing functionality test on SVG as well as JPG.

Fixes #6714.
2022-11-09 19:23:49 +02:00
skshetry a6bfc7db4e ci: test with 3.11 on all OSes (#8543)
* ci: test with 3.11 on all OSes

* Update tests.yaml

* Update tests.yaml
2022-11-09 12:05:27 +00:00
Yury 872a0d663e dvc exceptions CyclicGraphError: add more clear message for the exception
Fixes: #7915
2022-11-09 14:33:08 +05:45
dependabot[bot] c01583f3dd build(deps-dev): Bump dvc-task from 0.1.4 to 0.1.5
Bumps [dvc-task](https://github.com/iterative/dvc-task) from 0.1.4 to 0.1.5.
- [Release notes](https://github.com/iterative/dvc-task/releases)
- [Commits](https://github.com/iterative/dvc-task/compare/0.1.4...0.1.5)

---
updated-dependencies:
- dependency-name: dvc-task
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-11-09 16:37:14 +09:00
karajan1001 e0d41c7012 Make exp show handle errors better
fix: #8350

We shouldn't add locks to exp show to prevent race conditions
as this command is calling continuously by the extension.
So we make a better way to handle all kinds of reference failures.

1. Drop all based experiments if got a SCMError in baseline.
2. Drop all checkpoint experiments if any commit got a SCMError in
   one of checkpoint commit.
3. Drop the entire experiments if got a SCMError.
4. Add tests for each of the conditions above.
2022-11-08 20:12:22 +08:00
Peter Rowlands 628b992442 index: fix granular dir output view filtering 2022-11-08 19:28:10 +09:00
Peter Rowlands 99e7f52bbd index: support filtering by output in views 2022-11-08 19:28:10 +09:00
skshetry b2a275ee9e Create codeql.yml 2022-11-08 13:21:20 +05:45
skshetry 7e423b668f pkging: also post released packages to test.pypi.org 2022-11-07 18:57:53 +05:45
Saugat Pachhai (सौगात) 2c3956bdb0 exp init: fix live metrics path 2022-11-07 12:45:32 +01:00
Saugat Pachhai (सौगात) a48a19ce31 tests: ignore versions for subprojects 2022-11-07 12:45:32 +01:00
David de la Iglesia Castro 1de983f0de Remove live section support. 2022-11-07 12:45:32 +01:00
David de la Iglesia Castro eb20a8e049 deps: Bump dvclive to >= 1.0 2022-11-07 12:45:32 +01:00
David de la Iglesia Castro 78e25747a4 exp init: Update DVCLive paths.
Closes #8531
2022-11-07 12:45:32 +01:00
dberenbaum 240f0ebdc3 fix hydra_sweeps referenced before assignment 2022-11-04 15:59:26 +01:00
skshetry 69f78d3bb6 ci: bench: use 3.11 in benchmarks 2022-11-04 18:43:02 +05:45
skshetry 740fe504c9 Update README.rst 2022-11-04 18:27:50 +05:45
skshetry 7bb84286f5 readme: show downloads badge 2022-11-04 18:27:50 +05:45
Peter Rowlands 3891e81bdd index: load dir entries before generating target views 2022-11-04 19:09:48 +09:00
Peter Rowlands bb62833897 index: move import specific entry building out of index.data() property 2022-11-04 19:09:48 +09:00
Peter Rowlands fb703150ce output: load precomputed md5 from PARAM_FILES for non-local fs 2022-11-04 19:09:48 +09:00
Peter Rowlands 33d4ead8b6 import-url: save files for version-aware dir 2022-11-04 19:09:48 +09:00
Peter Rowlands 76b1f8c907 deps: bump dvc-data to 0.25.3 2022-11-04 19:09:48 +09:00
Paweł Redzyński d7152e360e Update dvc/repo/plots/__init__.py 2022-11-04 09:54:45 +05:45
dberenbaum ab69b88a21 plots: allow top-level strings 2022-11-04 09:54:45 +05:45
dependabot[bot] 43a8eab2e0 build(deps-dev): Bump dvc-s3 from 2.20.1 to 2.21.0
Bumps [dvc-s3](https://github.com/iterative/dvc-s3) from 2.20.1 to 2.21.0.
- [Release notes](https://github.com/iterative/dvc-s3/releases)
- [Commits](https://github.com/iterative/dvc-s3/compare/2.20.1...2.21.0)

---
updated-dependencies:
- dependency-name: dvc-s3
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
2022-11-04 08:09:29 +05:45
Saugat Pachhai (सौगात) 15f35e827e fix windows 2022-11-03 23:07:28 +05:45
Saugat Pachhai (सौगात) 4d17c171f1 tests: use mocker 2022-11-03 23:07:28 +05:45
Saugat Pachhai (सौगात) c27005a8b7 migrate test_{repro,run}*.py to pytest 2022-11-03 23:07:28 +05:45
Saugat Pachhai (सौगात) ecd371f8ae migrate test_move.py to pytest 2022-11-03 23:07:28 +05:45
Saugat Pachhai (सौगात) bda1388bff migrate test_gc.py to pytest 2022-11-03 23:07:28 +05:45
Saugat Pachhai (सौगात) c02bd7f318 migrate some files to pytest 2022-11-03 23:07:28 +05:45
Saugat Pachhai (सौगात) fe1d805c80 migrate test_cli.py to pytest 2022-11-03 23:07:28 +05:45
Saugat Pachhai (सौगात) f9b0de883f migrate test_checkout.py to pytest 2022-11-03 23:07:28 +05:45
Saugat Pachhai (सौगात) 1cad8ea7fd migrate test_{add,analytics,init,unprotect,local,process}.py to pytest 2022-11-03 23:07:28 +05:45
David de la Iglesia Castro 08a643e005 hydra: Raise lazy DvcException for Python >= 3.11 2022-11-03 12:14:18 +01:00
118 changed files with 4386 additions and 4600 deletions
+1 -1
View File
@@ -12,7 +12,7 @@ jobs:
steps:
- uses: actions/setup-python@v4
with:
python-version: "3.10"
python-version: "3.11"
- uses: iterative/dvc-bench@main
with:
pytest_options: "-k 'test_init or test_help'"
+39
View File
@@ -0,0 +1,39 @@
name: "CodeQL"
on:
push:
branches: ["main"]
pull_request:
branches: ["main"]
schedule:
- cron: '32 19 * * 2'
workflow_dispatch:
permissions:
contents: read
jobs:
analyze:
name: Analyze
runs-on: ubuntu-latest
permissions:
actions: read
contents: read
security-events: write
strategy:
fail-fast: false
matrix:
language: ['python']
steps:
- name: Checkout repository
uses: actions/checkout@v3
- name: Initialize CodeQL
uses: github/codeql-action/init@v2
with:
languages: ${{ matrix.language }}
- name: Perform CodeQL Analysis
uses: github/codeql-action/analyze@v2
+1 -1
View File
@@ -104,7 +104,7 @@ jobs:
password: ${{ secrets.PYPI_TOKEN }}
- name: Publish to Test PyPI
if: ${{ github.event_name == 'push' && github.ref == 'refs/heads/main' }}
if: ${{ github.event_name == 'release' || (github.event_name == 'push' && github.ref == 'refs/heads/main') }}
uses: pypa/gh-action-pypi-publish@release/v1
with:
password: ${{ secrets.TEST_PYPI_TOKEN }}
+4 -2
View File
@@ -46,13 +46,15 @@ jobs:
fail-fast: false
matrix:
os: [ubuntu-20.04, windows-latest]
pyv: ["3.8", "3.9", "3.10"]
pyv: ["3.8", "3.9", "3.10", "3.11"]
pytest-filter:
- "import or plot or live or experiment"
- "not (import or plot or live or experiment)"
include:
- {os: ubuntu-latest, pyv: "3.11"}
- {os: macos-latest, pyv: "3.8"}
- {os: macos-latest, pyv: "3.9"}
- {os: macos-latest, pyv: "3.10"}
- {os: macos-latest, pyv: "3.11"}
steps:
- uses: actions/checkout@v3
+6 -2
View File
@@ -13,7 +13,7 @@
|CI| |Python Version| |Coverage| |VS Code| |DOI|
|PyPI| |Packages| |Brew| |Conda| |Choco| |Snap|
|PyPI| |PyPI Downloads| |Packages| |Brew| |Conda| |Choco| |Snap|
|
@@ -276,6 +276,10 @@ Barrak, A., Eghan, E.E. and Adams, B. `On the Co-evolution of ML Pipelines and S
:target: https://pypi.org/project/dvc
:alt: PyPI
.. |PyPI Downloads| image:: https://img.shields.io/pypi/dm/dvc.svg?color=blue&label=Downloads&logo=pypi&logoColor=gold
:target: https://pypi.org/project/dvc
:alt: PyPI Downloads
.. |Packages| image:: https://img.shields.io/github/v/release/iterative/dvc?label=deb|pkg|rpm|exe&logo=GitHub
:target: https://github.com/iterative/dvc/releases/latest
:alt: deb|pkg|rpm|exe
@@ -292,6 +296,6 @@ Barrak, A., Eghan, E.E. and Adams, B. `On the Co-evolution of ML Pipelines and S
:target: https://github.com/iterative/dvc/graphs/contributors
:alt: Contributors
.. |VS Code| image:: https://vsmarketplacebadge.apphb.com/version/Iterative.dvc.svg
.. |VS Code| image:: https://img.shields.io/visual-studio-marketplace/v/Iterative.dvc?color=blue&label=VSCode&logo=visualstudiocode&logoColor=blue
:target: https://marketplace.visualstudio.com/items?itemName=Iterative.dvc
:alt: VS Code Extension
+3 -16
View File
@@ -2,8 +2,8 @@
import argparse
import logging
import os
import sys
from dvc import __version__
from dvc.commands import (
add,
cache,
@@ -128,17 +128,6 @@ class DvcParser(argparse.ArgumentParser):
return args
class VersionAction(argparse.Action): # pragma: no cover
# pylint: disable=too-few-public-methods
"""Shows DVC version and exits."""
def __call__(self, parser, namespace, values, option_string=None):
from dvc import __version__
print(__version__)
sys.exit(0)
def get_parent_parser():
"""Create instances of a parser containing common arguments shared among
all the commands.
@@ -186,13 +175,11 @@ def get_main_parser():
help="Show this help message and exit.",
)
# NOTE: On some python versions action='version' prints to stderr
# instead of stdout https://bugs.python.org/issue18920
parser.add_argument(
"-V",
"--version",
action=VersionAction,
nargs=0,
action="version",
version=__version__,
help="Show program's version.",
)
+4 -6
View File
@@ -18,15 +18,13 @@ class CmdExperimentsList(CmdBase):
)
tags = self.repo.scm.describe(exps)
remained = {baseline for baseline, tag in tags.items() if tag is None}
base = "refs/heads/"
base = "refs/heads"
ref_heads = self.repo.scm.describe(remained, base=base)
for baseline in exps:
name = (
tags[baseline]
or ref_heads[baseline][len(base) :]
or baseline[:7]
)
name = baseline[:7]
if tags[baseline] or ref_heads[baseline]:
name = tags[baseline] or ref_heads[baseline][len(base) + 1 :]
if not name_only:
print(f"{name}:")
for exp_name in exps[baseline]:
-20
View File
@@ -238,26 +238,6 @@ def _add_common_args(parser):
help="Declare output plot file (do not put into DVC cache).",
metavar="<path>",
)
parser.add_argument(
"--live", help="Declare output as dvclive.", metavar="<path>"
)
parser.add_argument(
"--live-no-cache",
help="Declare output as dvclive (do not put into DVC cache).",
metavar="<path>",
)
parser.add_argument(
"--live-no-summary",
action="store_true",
default=False,
help=argparse.SUPPRESS,
)
parser.add_argument(
"--live-no-html",
action="store_true",
default=False,
help="Signal dvclive logger to not produce training report.",
)
parser.add_argument(
"-w",
"--wdir",
+6 -4
View File
@@ -1,7 +1,7 @@
from collections import defaultdict
from typing import Any, Mapping
from dvc.output import ARTIFACT_SCHEMA, Output
from dvc.output import ARTIFACT_SCHEMA, DIR_FILES_SCHEMA, Output
from .base import Dependency
from .param import ParamsDependency
@@ -15,10 +15,11 @@ SCHEMA: Mapping[str, Any] = {
**ARTIFACT_SCHEMA,
**RepoDependency.REPO_SCHEMA,
**ParamsDependency.PARAM_SCHEMA,
Output.PARAM_FILES: [DIR_FILES_SCHEMA],
}
def _get(stage, p, info, fs_config=None):
def _get(stage, p, info, **kwargs):
if info and info.get(RepoDependency.PARAM_REPO):
repo = info.pop(RepoDependency.PARAM_REPO)
return RepoDependency(repo, stage, p, info)
@@ -27,14 +28,15 @@ def _get(stage, p, info, fs_config=None):
params = info.pop(ParamsDependency.PARAM_PARAMS)
return ParamsDependency(stage, p, params)
return Dependency(stage, p, info, fs_config=fs_config)
return Dependency(stage, p, info, **kwargs)
def loadd_from(stage, d_list):
ret = []
for d in d_list:
p = d.pop(Output.PARAM_PATH, None)
ret.append(_get(stage, p, d))
files = d.pop(Output.PARAM_FILES, None)
ret.append(_get(stage, p, d, files=files))
return ret
+5
View File
@@ -62,3 +62,8 @@ class Dependency(Output):
self.fs_path = self.fs.path.version_path(
self.fs_path, self.meta.version_id
)
def dumpd(self, **kwargs):
if self.fs.version_aware:
kwargs["with_files"] = True
return super().dumpd(**kwargs)
-3
View File
@@ -2,9 +2,6 @@ DVC_CHECKPOINT = "DVC_CHECKPOINT"
DVC_DAEMON = "DVC_DAEMON"
DVC_PAGER = "DVC_PAGER"
DVC_ROOT = "DVC_ROOT"
DVCLIVE_PATH = "DVCLIVE_PATH"
DVCLIVE_SUMMARY = "DVCLIVE_SUMMARY"
DVCLIVE_HTML = "DVCLIVE_HTML"
DVCLIVE_RESUME = "DVCLIVE_RESUME"
DVC_IGNORE_ISATTY = "DVC_IGNORE_ISATTY"
DVC_EXP_GIT_REMOTE = "DVC_EXP_GIT_REMOTE"
+10 -3
View File
@@ -132,10 +132,17 @@ class NotDvcRepoError(DvcException):
class CyclicGraphError(DvcException):
def __init__(self, stages):
assert isinstance(stages, list)
msg = "Pipeline has a cycle involving: {}.".format(
", ".join(s.addressing for s in stages)
stage_part = "stage" if len(stages) == 1 else "stages"
msg = (
"Same item(s) are defined as both a dependency and an output "
"in {stage_part}: {stage}."
)
super().__init__(
msg.format(
stage_part=stage_part,
stage=", ".join(s.addressing for s in stages),
)
)
super().__init__(msg)
class ConfirmRemoveError(DvcException):
+101 -63
View File
@@ -87,10 +87,10 @@ def loadd_from(stage, d_list):
plot = d.pop(Output.PARAM_PLOT, False)
persist = d.pop(Output.PARAM_PERSIST, False)
checkpoint = d.pop(Output.PARAM_CHECKPOINT, False)
live = d.pop(Output.PARAM_LIVE, False)
remote = d.pop(Output.PARAM_REMOTE, None)
annot = {field: d.pop(field, None) for field in ANNOTATION_FIELDS}
files = d.pop(Output.PARAM_FILES, None)
push = d.pop(Output.PARAM_PUSH, True)
ret.append(
_get(
stage,
@@ -101,10 +101,10 @@ def loadd_from(stage, d_list):
plot=plot,
persist=persist,
checkpoint=checkpoint,
live=live,
remote=remote,
**annot,
files=files,
push=push,
)
)
return ret
@@ -118,8 +118,8 @@ def loads_from(
plot=False,
persist=False,
checkpoint=False,
live=False,
remote=None,
push=True,
):
return [
_get(
@@ -131,8 +131,8 @@ def loads_from(
plot=plot,
persist=persist,
checkpoint=checkpoint,
live=live,
remote=remote,
push=push,
)
for s in s_list
]
@@ -166,29 +166,21 @@ def load_from_pipeline(stage, data, typ="outs"):
stage.PARAM_OUTS,
stage.PARAM_METRICS,
stage.PARAM_PLOTS,
stage.PARAM_LIVE,
):
raise ValueError(f"'{typ}' key is not allowed for pipeline files.")
metric = typ == stage.PARAM_METRICS
plot = typ == stage.PARAM_PLOTS
live = typ == stage.PARAM_LIVE
if live:
# `live` is single object
data = [data]
d = _merge_data(data)
for path, flags in d.items():
plt_d, live_d = {}, {}
plt_d = {}
if plot:
from dvc.schema import PLOT_PROPS
plt_d, flags = _split_dict(flags, keys=PLOT_PROPS.keys())
if live:
from dvc.schema import LIVE_PROPS
live_d, flags = _split_dict(flags, keys=LIVE_PROPS.keys())
extra = project(
flags,
[
@@ -196,6 +188,7 @@ def load_from_pipeline(stage, data, typ="outs"):
Output.PARAM_PERSIST,
Output.PARAM_CHECKPOINT,
Output.PARAM_REMOTE,
Output.PARAM_PUSH,
*ANNOTATION_FIELDS,
],
)
@@ -206,7 +199,6 @@ def load_from_pipeline(stage, data, typ="outs"):
info={},
plot=plt_d or plot,
metric=metric,
live=live_d or live,
**extra,
)
@@ -263,10 +255,8 @@ class Output:
PARAM_PLOT_TITLE = "title"
PARAM_PLOT_HEADER = "header"
PARAM_PERSIST = "persist"
PARAM_LIVE = "live"
PARAM_LIVE_SUMMARY = "summary"
PARAM_LIVE_HTML = "html"
PARAM_REMOTE = "remote"
PARAM_PUSH = "push"
METRIC_SCHEMA = Any(
None,
@@ -292,7 +282,6 @@ class Output:
plot=False,
persist=False,
checkpoint=False,
live=False,
desc=None,
type=None, # pylint: disable=redefined-builtin
labels=None,
@@ -301,6 +290,7 @@ class Output:
repo=None,
fs_config=None,
files: List[Dict[str, Any]] = None,
push: bool = True,
):
self.annot = Annotation(
desc=desc, type=type, labels=labels or [], meta=meta or {}
@@ -355,7 +345,7 @@ class Output:
self.plot = False if self.IS_DEPENDENCY else plot
self.persist = persist
self.checkpoint = checkpoint
self.live = live
self.can_push = push
self.fs_path = self._parse_path(self.fs, fs_path)
self.obj: Optional["HashFile"] = None
@@ -377,8 +367,12 @@ class Output:
name=self.hash_name,
value=getattr(self.meta, self.hash_name, None),
)
if self.hash_info and self.hash_info.isdir:
if self.meta.nfiles or self.hash_info and self.hash_info.isdir:
self.meta.isdir = True
if not self.hash_info and self.hash_name != "md5":
md5 = getattr(self.meta, "md5", None)
if md5:
self.hash_info = HashInfo("md5", md5)
def _parse_path(self, fs, fs_path):
parsed = urlparse(self.def_path)
@@ -523,7 +517,10 @@ class Output:
except NoRemoteError:
remote = None
return DataIndexEntry(
if self.files and not self.obj:
self.obj = self.get_obj()
entry = DataIndexEntry(
meta=self.meta,
obj=self.obj,
hash_info=self.hash_info,
@@ -531,6 +528,16 @@ class Output:
cache=self.odb,
remote=remote,
)
if self.stage.is_import and not self.stage.is_repo_import:
dep = self.stage.deps[0]
entry.fs = dep.fs
entry.path = dep.fs_path
entry.meta = dep.meta
if not entry.obj:
if not dep.obj and dep.files:
dep.obj = dep.get_obj()
entry.obj = dep.obj
return entry
def changed_checksum(self):
return self.hash_info != self.get_hash()
@@ -631,8 +638,16 @@ class Output:
if self.metric:
self.verify_metric()
if not self.use_cache:
_, self.meta, obj = build(
if self.use_cache:
_, self.meta, self.obj = build(
self.odb,
self.fs_path,
self.fs,
self.hash_name,
ignore=self.dvcignore,
)
else:
_, self.meta, self.obj = build(
self.repo.odb.local,
self.fs_path,
self.fs,
@@ -640,23 +655,11 @@ class Output:
ignore=self.dvcignore,
dry_run=True,
)
self.hash_info = obj.hash_info
self.files = None
if not self.IS_DEPENDENCY:
logger.debug(
"Output '%s' doesn't use cache. Skipping saving.", self
)
return
assert not self.IS_DEPENDENCY
_, self.meta, self.obj = build(
self.odb,
self.fs_path,
self.fs,
self.hash_name,
ignore=self.dvcignore,
)
self.hash_info = self.obj.hash_info
self.files = None
@@ -754,40 +757,40 @@ class Output:
ret[self.PARAM_PATH] = path
if self.IS_DEPENDENCY:
return ret
if not self.IS_DEPENDENCY:
ret.update(self.annot.to_dict())
if not self.use_cache:
ret[self.PARAM_CACHE] = self.use_cache
ret.update(self.annot.to_dict())
if not self.use_cache:
ret[self.PARAM_CACHE] = self.use_cache
if isinstance(self.metric, dict):
if (
self.PARAM_METRIC_XPATH in self.metric
and not self.metric[self.PARAM_METRIC_XPATH]
):
del self.metric[self.PARAM_METRIC_XPATH]
if isinstance(self.metric, dict):
if (
self.PARAM_METRIC_XPATH in self.metric
and not self.metric[self.PARAM_METRIC_XPATH]
):
del self.metric[self.PARAM_METRIC_XPATH]
if self.metric:
ret[self.PARAM_METRIC] = self.metric
if self.metric:
ret[self.PARAM_METRIC] = self.metric
if self.plot:
ret[self.PARAM_PLOT] = self.plot
if self.plot:
ret[self.PARAM_PLOT] = self.plot
if self.persist:
ret[self.PARAM_PERSIST] = self.persist
if self.persist:
ret[self.PARAM_PERSIST] = self.persist
if self.checkpoint:
ret[self.PARAM_CHECKPOINT] = self.checkpoint
if self.checkpoint:
ret[self.PARAM_CHECKPOINT] = self.checkpoint
if self.remote:
ret[self.PARAM_REMOTE] = self.remote
if self.live:
ret[self.PARAM_LIVE] = self.live
if not self.can_push:
ret[self.PARAM_PUSH] = self.can_push
if self.remote:
ret[self.PARAM_REMOTE] = self.remote
if self.hash_info.isdir and (
kwargs.get("with_files") or self.files is not None
if (
(not self.IS_DEPENDENCY or self.stage.is_import)
and self.hash_info.isdir
and (kwargs.get("with_files") or self.files is not None)
):
if self.obj:
obj = self.obj
@@ -1040,9 +1043,15 @@ class Output:
if not self.use_cache:
return {}
push: bool = kwargs.pop("push", False)
if self.stage.is_repo_import:
if push:
return {}
return self.get_used_external(**kwargs)
if push and not self.can_push:
return {}
if not self.hash_info:
msg = (
"Output '{}'({}) is missing version info. "
@@ -1182,11 +1191,39 @@ class Output:
@property
def is_metric(self) -> bool:
return bool(self.metric) or bool(self.live)
return bool(self.metric)
@property
def is_plot(self) -> bool:
return bool(self.plot) or bool(self.live)
return bool(self.plot)
def restore_fields(self, other: "Output"):
"""Restore attributes that need to be preserved when serialized."""
self.annot = other.annot
self.remote = other.remote
self.can_push = other.can_push
def merge_version_meta(self, other: "Output"):
"""Merge version meta for files which are unchanged from other."""
if not self.hash_info:
return
if self.hash_info.isdir:
return self._merge_dir_version_meta(other)
if self.hash_info != other.hash_info:
return
self.meta = other.meta
def _merge_dir_version_meta(self, other: "Output"):
from dvc_data.hashfile.tree import update_meta
if not self.obj or not other.hash_info.isdir:
return
other_obj = other.obj if other.obj is not None else other.get_obj()
assert isinstance(self.obj, Tree) and isinstance(other_obj, Tree)
updated = update_meta(self.obj, other_obj)
assert updated.hash_info == self.obj.hash_info
self.obj = updated
self.files = updated.as_list(with_meta=True)
META_SCHEMA = {
@@ -1217,5 +1254,6 @@ SCHEMA = {
Output.PARAM_CACHE: bool,
Output.PARAM_METRIC: Output.METRIC_SCHEMA,
Output.PARAM_REMOTE: str,
Output.PARAM_PUSH: bool,
Output.PARAM_FILES: [DIR_FILES_SCHEMA],
}
+13 -2
View File
@@ -1,3 +1,4 @@
import os
import re
import typing
from collections.abc import Iterable, Mapping
@@ -70,6 +71,16 @@ def embrace(s: str):
return BRACE_OPEN + s + BRACE_CLOSE
def escape_str(value):
if os.name == "nt":
from subprocess import list2cmdline
return list2cmdline([value])
from shlex import quote
return quote(value)
@singledispatch
def to_str(obj) -> str:
return str(obj)
@@ -97,12 +108,12 @@ def _(obj: dict):
result += f"--no-{k} "
elif isinstance(v, str):
result += f"--{k} '{v}' "
result += f"--{k} {escape_str(v)} "
elif isinstance(v, Iterable):
for n, i in enumerate(v):
if isinstance(i, str):
i = f"'{i}'"
i = escape_str(i)
elif isinstance(i, Iterable):
raise ParseError(
f"Cannot interpolate nested iterable in '{k}'"
+3 -3
View File
@@ -14,14 +14,14 @@ from dvc.render.converter.vega import VegaConverter
def _get_converter(
renderer_class, props
renderer_class, renderer_id, props, data
) -> Union[VegaConverter, ImageConverter]:
from dvc_render import ImageRenderer, VegaRenderer
if renderer_class.TYPE == VegaRenderer.TYPE:
return VegaConverter(props)
return VegaConverter(renderer_id, data, props)
if renderer_class.TYPE == ImageRenderer.TYPE:
return ImageConverter(props)
return ImageConverter(renderer_id, data, props)
raise ValueError(f"Invalid renderer class {renderer_class}")
+14 -4
View File
@@ -1,9 +1,19 @@
from typing import Dict, Optional
from typing import Any, Dict, List, Optional, Tuple
class Converter:
def __init__(self, plot_properties: Optional[Dict] = None):
self.plot_properties = plot_properties or {}
def __init__(
self,
plot_id: str,
data: Dict[str, Any] = None,
properties: Optional[Dict] = None,
):
self.plot_id = plot_id
self.properties = properties or {}
self.data = data or {}
def convert(self, data, revision: str, filename: str, **kwargs):
def convert(self) -> Tuple[List[Tuple[str, str, Any]], Dict]:
raise NotImplementedError
def flat_datapoints(self, revision: str) -> Tuple[List[Dict], Dict]:
raise NotImplementedError
+27 -19
View File
@@ -1,6 +1,6 @@
import base64
import os
from typing import TYPE_CHECKING, Dict, List, Tuple
from typing import TYPE_CHECKING, Any, Dict, List, Tuple
from dvc.render import FILENAME_FIELD, REVISION_FIELD, SRC_FIELD
@@ -34,25 +34,33 @@ class ImageConverter(Converter):
base64_str = base64.b64encode(image_data).decode()
return f"data:image;base64,{base64_str}"
def convert(
self, data, revision: str, filename: str, **kwargs
) -> Tuple[List[Dict], Dict]:
def convert(self) -> Tuple[List[Tuple[str, str, Any]], Dict]:
datas = []
for filename, image_data in self.data.items():
datas.append((filename, "", image_data))
return datas, self.properties
def flat_datapoints(self, revision: str) -> Tuple[List[Dict], Dict]:
"""
Convert the DVC Plots content to DVC Render datapoints.
Return both generated datapoints and updated properties.
"""
path = self.plot_properties.get("out")
if path:
if not os.path.isdir(path):
os.makedirs(path, exist_ok=True)
src = self._write_image(
os.path.abspath(path), revision, filename, data
)
else:
src = self._encode_image(data)
datapoint = {
REVISION_FIELD: revision,
FILENAME_FIELD: filename,
SRC_FIELD: src,
}
return [datapoint], self.plot_properties
path = self.properties.get("out")
datapoints = []
datas, properties = self.convert()
for filename, _, image_data in datas:
if path:
if not os.path.isdir(path):
os.makedirs(path, exist_ok=True)
src = self._write_image(
os.path.abspath(path), revision, filename, image_data
)
else:
src = self._encode_image(image_data)
datapoint = {
REVISION_FIELD: revision,
FILENAME_FIELD: filename,
SRC_FIELD: src,
}
datapoints.append(datapoint)
return datapoints, properties
+263 -265
View File
@@ -1,90 +1,101 @@
from copy import deepcopy
from functools import partial
from typing import Dict, Iterable, List, Optional, Set, Union
from typing import Any, Dict, Iterable, List, Tuple, Union
from funcy import first, project
from funcy import first, last
from dvc.exceptions import DvcException
from dvc.render import (
FILENAME_FIELD,
INDEX_FIELD,
REVISION_FIELD,
VERSION_FIELD,
)
from dvc.render import FILENAME_FIELD, INDEX_FIELD, VERSION_FIELD
from . import Converter
class FieldsNotFoundError(DvcException):
def __init__(self, expected_fields, found_fields):
expected_str = ", ".join(expected_fields)
class FieldNotFoundError(DvcException):
def __init__(self, expected_field, found_fields):
found_str = ", ".join(found_fields)
super().__init__(
f"Could not find all provided fields ('{expected_str}') "
f"Could not find provided field ('{expected_field}') "
f"in data fields ('{found_str}')."
)
class PlotDataStructureError(DvcException):
def __init__(self):
super().__init__(
"Plot data extraction failed. Please see "
"https://man.dvc.org/plots for supported data formats."
)
def _lists(blob: Union[Dict, List]) -> Iterable[List]:
if isinstance(blob, list):
yield blob
else:
for _, value in blob.items():
if isinstance(value, dict):
yield from _lists(value)
elif isinstance(value, list):
yield value
def _filter_fields(
datapoints: List[Dict], fields: Set, **kwargs
) -> List[Dict]:
if not fields:
return datapoints
assert isinstance(fields, set)
new_data = []
for data_point in datapoints:
keys = set(data_point.keys())
if not fields <= keys:
raise FieldsNotFoundError(fields, keys)
new_data.append(project(data_point, fields))
return new_data
def _file_field(*args):
for axis_def in args:
if axis_def is not None:
for file, val in axis_def.items():
if isinstance(val, str):
yield file, val
elif isinstance(val, list):
for field in val:
yield file, field
def _lists(dictionary: Dict):
for _, value in dictionary.items():
if isinstance(value, dict):
yield from _lists(value)
elif isinstance(value, list):
yield value
def _find(
filename: str,
field: str,
data_series: List[Tuple[str, str, Any]],
):
for data_file, data_field, data in data_series:
if data_file == filename and data_field == field:
return data_file, data_field, data
return None
def _find_first_list(
data: Union[Dict, List], fields: Set, **kwargs
) -> List[Dict]:
fields = fields or set()
if not isinstance(data, dict):
return data
for lst in _lists(data):
if (
all(isinstance(dp, dict) for dp in lst)
# if fields is empty, it will match any set
and set(first(lst).keys()) & fields == fields
):
return lst
raise PlotDataStructureError()
def _verify_field(file2datapoints: Dict[str, List], filename: str, field: str):
if filename in file2datapoints:
datapoint = first(file2datapoints[filename])
if field not in datapoint:
raise FieldNotFoundError(field, datapoint.keys())
return
def _append_index(datapoints: List[Dict], **kwargs) -> List[Dict]:
if INDEX_FIELD in first(datapoints).keys():
return datapoints
def _get_x(properties: Dict, file2datapoints: Dict[str, List[Dict]]):
x = properties.get("x", None)
if x is not None and isinstance(x, dict):
filename, field = first(_file_field(x))
_verify_field(file2datapoints, filename, field)
return filename, field
return None
for index, data_point in enumerate(datapoints):
data_point[INDEX_FIELD] = index
return datapoints
def _get_ys(properties, file2datapoints: Dict[str, List[Dict]]):
y = properties.get("y", None)
if y is not None:
for filename, field in _file_field(y):
_verify_field(file2datapoints, filename, field)
yield filename, field
def _is_datapoints(lst: List[Dict]):
"""
check if dict keys match, datapoints with different keys mgiht lead
to unexpected behavior
"""
return all(isinstance(item, dict) for item in lst) and set(
first(lst).keys()
) == {key for keys in lst for key in keys}
def get_datapoints(file_content: Dict):
result: List[Dict[str, Any]] = []
for lst in _lists(file_content):
if _is_datapoints(lst):
for index, datapoint in enumerate(lst):
if len(result) <= index:
result.append({})
result[index].update(datapoint)
return result
class VegaConverter(Converter):
@@ -95,228 +106,215 @@ class VegaConverter(Converter):
('x', 'y') it will attempt to fill in the blanks.
"""
def __init__(self, plot_properties: Optional[Dict] = None):
super().__init__(plot_properties)
def __init__(
self, plot_id: str, data: Dict = None, properties: Dict = None
):
super().__init__(plot_id, data, properties)
self.plot_id = plot_id
self.inferred_properties: Dict = {}
self.steps = []
# TODO we should be handling that in `convert`,
# to avoid stateful `self.inferred_properties`
self._infer_x_y()
self._infer_x()
self._infer_fields()
def _infer_y_from_data(self):
if self.plot_id in self.data:
for lst in _lists(self.data[self.plot_id]):
if all(isinstance(item, dict) for item in lst):
datapoint = first(lst)
field = last(datapoint.keys())
self.inferred_properties["y"] = {self.plot_id: field}
break
self.steps.append(
(
"find_data",
partial(
_find_first_list,
fields=self.inferred_properties.get("fields", set())
- {INDEX_FIELD},
),
)
)
def _infer_x_y(self):
def _infer_files(from_name, to_name):
from_value = self.properties.get(from_name, None)
to_value = self.properties.get(to_name, None)
if not self.plot_properties.get("x", None):
self.steps.append(("append_index", partial(_append_index)))
self.steps.append(
(
"filter_fields",
partial(
_filter_fields,
fields=self.inferred_properties.get("fields", set()),
),
)
)
self.steps.append(
(
"infer_y",
partial(
self._infer_y,
),
)
)
self.steps.append(
(
"generate_y",
partial(
self._generate_y_values,
),
)
)
def _infer_x(self):
if not self.plot_properties.get("x", None):
self.inferred_properties["x"] = INDEX_FIELD
def skip_step(self, name: str):
self.steps = [(_name, fn) for _name, fn in self.steps if _name != name]
def _infer_fields(self):
fields = self.plot_properties.get("fields", set())
if fields:
fields = {
*fields,
self.plot_properties.get("x", None),
self.plot_properties.get("y", None),
self.inferred_properties.get("x", None),
} - {None}
self.inferred_properties["fields"] = fields
def _infer_y(self, datapoints: List[Dict], **kwargs):
if "y" not in self.plot_properties:
data_fields = list(first(datapoints))
skip = (
REVISION_FIELD,
self.plot_properties.get("x", None)
or self.inferred_properties.get("x"),
FILENAME_FIELD,
VERSION_FIELD,
)
inferred_y = first(
f for f in reversed(data_fields) if f not in skip
)
if "y" in self.inferred_properties:
previous_y = self.inferred_properties["y"]
if previous_y != inferred_y:
raise DvcException(
f"Inferred y ('{inferred_y}' value does not match"
f"previously matched one ('f{previous_y}')."
)
if isinstance(to_value, str):
self.inferred_properties[to_name] = {}
if isinstance(from_value, dict):
for file in from_value.keys():
self.inferred_properties[to_name][file] = to_value
else:
self.inferred_properties[to_name][self.plot_id] = to_value
else:
self.inferred_properties["y"] = inferred_y
return datapoints
self.inferred_properties[to_name] = to_value
_infer_files("y", "x")
_infer_files("x", "y")
if self.inferred_properties.get("y", None) is None:
self._infer_y_from_data()
def _find_datapoints(self):
result = {}
for file, content in self.data.items():
result[file] = get_datapoints(content)
return result
@staticmethod
def infer_y_label(properties):
y_label = properties.get("y_label", None)
if y_label is None:
y = properties.get("y", None)
if isinstance(y, dict):
fields = {field for _, field in _file_field(y)}
if len(fields) == 1:
y_label = first(fields)
else:
y_label = "y"
elif isinstance(y, list):
y_label = "y"
elif isinstance(y, str):
y_label = y
return y_label
@staticmethod
def infer_x_label(properties):
x_label = properties.get("x_label", None)
if x_label is None:
x = properties.get("x", None)
if isinstance(x, dict):
fields = {field for _, field in _file_field(x)}
if len(fields) == 1:
x_label = first(fields)
else:
x_label = "x"
else:
x_label = INDEX_FIELD
return x_label
def flat_datapoints(self, revision):
file2datapoints, properties = self.convert()
props_update = {}
x = _get_x(properties, file2datapoints)
# assign "step" if no x provided
if not x:
x_file, x_field = (
None,
INDEX_FIELD,
)
else:
x_file, x_field = x
props_update["x"] = x_field
ys = list(_get_ys(properties, file2datapoints))
all_datapoints = []
all_y_fields = {y_field for _, y_field in ys}
# override to unified y field name if there are different y fields
if len(all_y_fields) > 1:
props_update["y"] = "dvc_inferred_y_value"
else:
props_update["y"] = first(all_y_fields)
for y_file, y_field in ys:
datapoints = deepcopy(file2datapoints.get(y_file, []))
if props_update.get("y", None) == "dvc_inferred_y_value":
_update_from_field(
datapoints,
field="dvc_inferred_y_value",
source_field=y_field,
)
if x_field == INDEX_FIELD and x_file is None:
_update_from_index(datapoints, INDEX_FIELD)
else:
x_datapoints = file2datapoints.get(x_file, [])
try:
_update_from_field(
datapoints,
field=x_field,
source_datapoints=x_datapoints,
)
except IndexError:
raise DvcException(
f"Cannot join '{x_field}' from '{x_file}' and "
"'{y_field}' from '{y_file}'. "
"They have to have same length."
)
_update_all(
datapoints,
update_dict={
VERSION_FIELD: {
"revision": revision,
FILENAME_FIELD: y_file,
"field": y_field,
}
},
)
all_datapoints.extend(datapoints)
if not all_datapoints:
return [], {}
properties = {**properties, **props_update}
return all_datapoints, properties
def convert(
self,
data,
revision: str,
filename: str,
skip: List = None,
**kwargs,
):
"""
Convert the data. Fill necessary fields ('x', 'y') and return both
generated datapoints and updated properties.
generated datapoints and updated properties. If `x` is not provided,
leave it as None, fronteds should handle it.
NOTE: Studio uses this method.
The only thing studio FE handles is filling `x` and `y`.
`x/y_label` should be filled here.
Datapoints are not stripped according to config, because users
might be utilizing other fields in their custom plots.
"""
if not skip:
skip = []
datapoints = self._find_datapoints()
properties = {**self.properties, **self.inferred_properties}
processed = deepcopy(data)
properties["y_label"] = self.infer_y_label(properties)
properties["x_label"] = self.infer_x_label(properties)
for step_name, step in self.steps:
if step_name not in skip:
processed = step( # type: ignore
processed,
revision=revision,
filename=filename,
)
return datapoints, properties
return processed, {**self.plot_properties, **self.inferred_properties}
def _generate_y_values( # noqa: C901
self,
datapoints: List[Dict],
revision: str,
filename: str,
**kwargs,
) -> List[Dict]:
def _update_from_field(
target_datapoints: List[Dict],
field: str,
source_datapoints: List[Dict] = None,
source_field: str = None,
):
if source_datapoints is None:
source_datapoints = target_datapoints
if source_field is None:
source_field = field
y_values = self.plot_properties.get(
"y", None
) or self.inferred_properties.get("y", None)
if len(source_datapoints) != len(target_datapoints):
raise IndexError(
"Source and target datapoints must have the same length"
)
assert y_values is not None
for index, datapoint in enumerate(target_datapoints):
source_datapoint = source_datapoints[index]
if source_field in source_datapoint:
datapoint[field] = source_datapoint[source_field]
result = []
properties_update = {}
def _add_version_info(datapoint, version_info):
tmp = datapoint.copy()
tmp[VERSION_FIELD] = version_info
return tmp
def _update_from_index(datapoints: List[Dict], new_field: str):
for index, datapoint in enumerate(datapoints):
datapoint[new_field] = index
def _version_info(revision, filename=None, field=None):
res = {"revision": revision}
if filename is not None:
res["filename"] = filename
if field is not None:
res["field"] = field
return res
def _generate_y(datapoint, field):
tmp = datapoint.copy()
tmp["dvc_inferred_y_value"] = datapoint[field]
tmp = _add_version_info(
tmp, _version_info(revision, filename, field)
)
if (
"y_label" not in properties_update
and "y_label" not in self.plot_properties
):
properties_update["y_label"] = "y"
def _update_all(datapoints: List[Dict], update_dict: Dict):
properties_update["y"] = "dvc_inferred_y_value"
return tmp
if isinstance(y_values, str):
for datapoint in datapoints:
result.append(
_add_version_info(
datapoint, _version_info(revision, filename, y_values)
)
)
if isinstance(y_values, list):
for datapoint in datapoints:
for y_val in y_values:
if y_val in datapoint:
result.append(_generate_y(datapoint, y_val))
if isinstance(y_values, dict):
def _to_set(values: Iterable):
result = set()
for val in values:
if isinstance(val, list):
for elem in val:
result.add(elem)
else:
result.add(val)
return result
all_fields = _to_set(y_values.values())
if (
all([isinstance(field, str) for field in all_fields])
and len(all_fields) == 1
):
# if we use the same field from all files,
# we dont have to generate it
y_field = all_fields.pop()
for datapoint in datapoints:
result.append(
_add_version_info(
datapoint,
_version_info(revision, filename, y_field),
)
)
properties_update.update({"y": y_field})
else:
for def_filename, val in y_values.items():
if isinstance(val, str):
fields = [val]
if isinstance(val, list):
fields = val
for datapoint in datapoints:
for field in fields:
if field in datapoint and def_filename in filename:
result.append(_generate_y(datapoint, field))
self.inferred_properties = {
**self.inferred_properties,
**properties_update,
}
return result
for datapoint in datapoints:
datapoint.update(update_dict)
+9 -10
View File
@@ -42,7 +42,7 @@ class PlotsData:
return dict(groups)
def get_definition_data(self, target_files, rev):
result = []
result = {}
for file in target_files:
file_content = (
self.data.get(rev, {})
@@ -52,7 +52,7 @@ class PlotsData:
.get("data", {})
)
if file_content:
result.append((file, file_content))
result[file] = file_content
return result
@@ -91,15 +91,14 @@ def match_defs_renderers(
renderer_cls = VegaRenderer
renderer_id = plot_id
converter = _get_converter(renderer_cls, props)
converter = _get_converter(
renderer_cls, inner_id, props, definitions_data
)
for filename, plot_data in definitions_data:
dps, final_props = converter.convert(
revision=rev,
filename=filename,
data=plot_data,
)
plot_datapoints.extend(dps)
dps, rev_props = converter.flat_datapoints(rev)
if not final_props and rev_props:
final_props = rev_props
plot_datapoints.extend(dps)
if "title" not in final_props:
final_props["title"] = renderer_id
+3 -1
View File
@@ -269,7 +269,7 @@ class Repo:
except SCMError:
if self._uninitialized:
# might not be a git/dvc repo at all
# used in `params/metrics/plots/live` targets
# used in `params/metrics/plots` targets
return SCM(self.root_dir, no_scm=True)
raise
@@ -401,6 +401,7 @@ class Repo:
used_run_cache=None,
revs=None,
num=1,
push: bool = False,
):
"""Get the stages related to the given target and collect
the `info` of its outputs.
@@ -435,6 +436,7 @@ class Repo:
jobs=jobs,
recursive=recursive,
with_deps=with_deps,
push=push,
).items():
used[odb].update(objs)
+1 -1
View File
@@ -187,7 +187,7 @@ def add( # noqa: C901
stage.transfer(source, to_remote=to_remote, odb=odb, **kwargs)
else:
try:
stage.save()
stage.save(merge_versioned=True)
if not no_commit:
stage.commit()
except CacheLinkError:
+5 -3
View File
@@ -12,6 +12,7 @@ from typing import (
Optional,
Tuple,
TypedDict,
Union,
cast,
)
@@ -19,10 +20,9 @@ from dvc.fs.git import GitFileSystem
from dvc.ui import ui
if TYPE_CHECKING:
from scmrepo.base import Base
from dvc.output import Output
from dvc.repo import Repo
from dvc.scm import Git, NoSCM
from dvc_data.hashfile.db import HashFileDB
from dvc_data.hashfile.hash_info import HashInfo
from dvc_data.hashfile.obj import HashFile
@@ -140,7 +140,9 @@ class GitInfo(TypedDict, total=False):
is_dirty: bool
def _git_info(scm: "Base", untracked_files: str = "all") -> GitInfo:
def _git_info(
scm: Union["Git", "NoSCM"], untracked_files: str = "all"
) -> GitInfo:
from scmrepo.exceptions import SCMError
from dvc.scm import NoSCM
+17 -3
View File
@@ -4,7 +4,7 @@ import re
import time
from typing import Dict, Iterable, Optional
from funcy import cached_property, first
from funcy import cached_property, chain, first
from dvc.exceptions import DvcException
from dvc.ui import ui
@@ -171,7 +171,18 @@ class Experiments:
) -> Dict[str, str]:
results: Dict[str, str] = {}
if entries is None:
entries = list(self.celery_queue.iter_queued())
entries = list(
chain(
self.celery_queue.iter_active(),
self.celery_queue.iter_queued(),
)
)
logger.debug(
"reproduce all these entries '%s'",
entries,
)
if not entries:
return results
@@ -189,7 +200,10 @@ class Experiments:
time.sleep(1)
self.celery_queue.follow(entry)
# wait for task collection to complete
result = self.celery_queue.get_result(entry)
try:
result = self.celery_queue.get_result(entry)
except FileNotFoundError:
result = None
if result is None or result.exp_hash is None:
name = entry.name or entry.stash_rev[:7]
failed.append(name)
+5 -5
View File
@@ -7,7 +7,7 @@ logger = logging.getLogger(__name__)
def diff(repo, *args, a_rev=None, b_rev=None, param_deps=False, **kwargs):
from dvc.repo.experiments.show import _collect_experiment_commit
from dvc.repo.experiments.show import collect_experiment_commit
from dvc.scm import resolve_rev
if repo.scm.no_commits:
@@ -15,15 +15,15 @@ def diff(repo, *args, a_rev=None, b_rev=None, param_deps=False, **kwargs):
if a_rev:
rev = resolve_rev(repo.scm, a_rev)
old = _collect_experiment_commit(repo, rev, param_deps=param_deps)
old = collect_experiment_commit(repo, rev, param_deps=param_deps)
else:
old = _collect_experiment_commit(repo, "HEAD", param_deps=param_deps)
old = collect_experiment_commit(repo, "HEAD", param_deps=param_deps)
if b_rev:
rev = resolve_rev(repo.scm, b_rev)
new = _collect_experiment_commit(repo, rev, param_deps=param_deps)
new = collect_experiment_commit(repo, rev, param_deps=param_deps)
else:
new = _collect_experiment_commit(
new = collect_experiment_commit(
repo, "workspace", param_deps=param_deps
)
+2 -9
View File
@@ -602,29 +602,22 @@ class BaseExecutor(ABC):
logger.debug("Running repro in '%s'", os.getcwd())
yield dvc
info.status = TaskStatus.SUCCESS
if infofile is not None:
info.dump_json(infofile)
except CheckpointKilledError:
info.status = TaskStatus.FAILED
if infofile is not None:
info.dump_json(infofile)
raise
except DvcException:
if log_errors:
logger.exception("")
info.status = TaskStatus.FAILED
if infofile is not None:
info.dump_json(infofile)
raise
except Exception:
if log_errors:
logger.exception("unexpected error")
info.status = TaskStatus.FAILED
if infofile is not None:
info.dump_json(infofile)
raise
finally:
if infofile is not None:
info.dump_json(infofile)
dvc.close()
os.chdir(old_cwd)
+1 -1
View File
@@ -47,9 +47,9 @@ class BaseLocalExecutor(BaseExecutor):
return SCM(self.root_dir)
def cleanup(self, infofile: str):
super().cleanup(infofile)
self.scm.close()
del self.scm
super().cleanup(infofile)
def collect_cache(
self, repo: "Repo", exp_ref: "ExpRefInfo", run_cache: bool = True
+10 -8
View File
@@ -248,11 +248,6 @@ def init(
except MissingParamsFile:
pass
models = context.get("models")
live_path = context.pop("live", None)
live_metrics = f"{live_path}.json" if live_path else None
live_plots = os.path.join(live_path, "scalars") if live_path else None
if type == "checkpoint":
outs_key = "checkpoints"
metrics_key = "metrics_persist_no_cache"
@@ -262,6 +257,13 @@ def init(
metrics_key = "metrics_no_cache"
plots_key = "plots_no_cache"
models = [context.get("models")]
metrics = [context.get("metrics")]
plots = [context.get("plots")]
if live_path := context.pop("live", None):
metrics.append(os.path.join(live_path, "metrics.json"))
plots.append(os.path.join(live_path, "plots"))
stage = repo.stage.create(
name=name,
cmd=context["cmd"],
@@ -269,9 +271,9 @@ def init(
params=[{params: None}] if params else None,
force=force,
**{
outs_key: compact([models]),
metrics_key: compact([context.get("metrics"), live_metrics]),
plots_key: compact([context.get("plots"), live_plots]),
outs_key: compact(models),
metrics_key: compact(metrics),
plots_key: compact(plots),
},
)
+2 -10
View File
@@ -1,6 +1,5 @@
import logging
import os
import sys
from abc import ABC, abstractmethod
from dataclasses import asdict, dataclass
from typing import (
@@ -526,16 +525,9 @@ class BaseStashQueue(ABC):
.. _Hydra Override:
https://hydra.cc/docs/advanced/override_grammar/basic/
"""
logger.debug("Using experiment params '%s'", params)
from dvc.utils.hydra import apply_overrides, compose_and_dump
try:
from dvc.utils.hydra import apply_overrides, compose_and_dump
except ValueError:
if sys.version_info >= (3, 11):
raise DvcException(
"--set-param is not supported in Python >= 3.11"
)
raise
logger.debug("Using experiment params '%s'", params)
hydra_config = self.repo.config.get("hydra", {})
hydra_enabled = hydra_config.get("enabled", False)
+90 -42
View File
@@ -15,7 +15,7 @@ from typing import (
)
from celery.result import AsyncResult
from funcy import cached_property
from funcy import cached_property, first
from kombu.message import Message
from dvc.daemon import daemonize
@@ -23,13 +23,9 @@ from dvc.exceptions import DvcException
from dvc.ui import ui
from ..exceptions import UnresolvedQueueExpNamesError
from ..executor.base import (
EXEC_TMP_DIR,
ExecutorInfo,
ExecutorResult,
TaskStatus,
)
from ..executor.base import EXEC_TMP_DIR, ExecutorInfo, ExecutorResult
from .base import BaseStashQueue, QueueDoneResult, QueueEntry, QueueGetResult
from .exceptions import CannotKillTasksError
from .tasks import run_exp
from .utils import fetch_running_exp_from_temp_dir
@@ -187,6 +183,7 @@ class LocalCeleryQueue(BaseStashQueue):
continue
args, kwargs, _embed = msg.decode()
entry_dict = kwargs.get("entry_dict", args[0])
logger.debug("Found queued task %s", entry_dict["stash_rev"])
yield _MessageEntry(msg, QueueEntry.from_dict(entry_dict))
def _iter_processed(self) -> Generator[_MessageEntry, None, None]:
@@ -203,6 +200,7 @@ class LocalCeleryQueue(BaseStashQueue):
task_id = msg.headers["id"]
result: AsyncResult = AsyncResult(task_id)
if not result.ready():
logger.debug("Found active task %s", entry.stash_rev)
yield _TaskEntry(result, entry)
def _iter_done_tasks(self) -> Generator[_TaskEntry, None, None]:
@@ -211,6 +209,7 @@ class LocalCeleryQueue(BaseStashQueue):
task_id = msg.headers["id"]
result: AsyncResult = AsyncResult(task_id)
if result.ready():
logger.debug("Found done task %s", entry.stash_rev)
yield _TaskEntry(result, entry)
def iter_active(self) -> Generator[QueueEntry, None, None]:
@@ -243,67 +242,115 @@ class LocalCeleryQueue(BaseStashQueue):
def reproduce(self) -> Mapping[str, Mapping[str, str]]:
raise NotImplementedError
def get_result(
def _load_info(self, rev: str) -> ExecutorInfo:
infofile = self.get_infofile_path(rev)
return ExecutorInfo.load_json(infofile)
def _get_done_result(
self, entry: QueueEntry, timeout: Optional[float] = None
) -> Optional[ExecutorResult]:
) -> Optional["ExecutorResult"]:
from celery.exceptions import TimeoutError as _CeleryTimeout
def _load_info(rev: str) -> ExecutorInfo:
infofile = self.get_infofile_path(rev)
return ExecutorInfo.load_json(infofile)
def _load_collected(rev: str) -> Optional[ExecutorResult]:
executor_info = _load_info(rev)
if executor_info.status > TaskStatus.SUCCESS:
for msg, processed_entry in self._iter_processed():
if entry.stash_rev == processed_entry.stash_rev:
task_id = msg.headers["id"]
result: AsyncResult = AsyncResult(task_id)
if not result.ready():
logger.debug(
"Waiting for exp task '%s' to complete", result.id
)
try:
result.get(timeout=timeout)
except _CeleryTimeout as exc:
raise DvcException(
"Timed out waiting for exp to finish."
) from exc
executor_info = self._load_info(entry.stash_rev)
return executor_info.result
raise FileNotFoundError
raise FileNotFoundError
def get_result(
self, entry: QueueEntry, timeout: Optional[float] = None
) -> Optional["ExecutorResult"]:
try:
return _load_collected(entry.stash_rev)
return self._get_done_result(entry, timeout)
except FileNotFoundError:
# Infofile will not be created until execution begins
pass
for queue_entry in self.iter_queued():
if entry.stash_rev == queue_entry.stash_rev:
raise DvcException("Experiment has not been started.")
for result, active_entry in self._iter_active_tasks():
if entry.stash_rev == active_entry.stash_rev:
logger.debug(
"Waiting for exp task '%s' to complete", result.id
)
try:
result.get(timeout=timeout)
except _CeleryTimeout as exc:
raise DvcException(
"Timed out waiting for exp to finish."
) from exc
executor_info = _load_info(entry.stash_rev)
return executor_info.result
# NOTE: It's possible for an exp to complete while iterating through
# other queued and active tasks, in which case the exp will get moved
# out of the active task list, and needs to be loaded here.
return _load_collected(entry.stash_rev)
return self._get_done_result(entry, timeout)
def _get_running_task_ids(self) -> Set[str]:
running_task_ids: Set[str] = set()
active_workers = self.worker_status()
for _, tasks in active_workers.items():
task = first(tasks)
if task:
running_task_ids.add(task["id"])
return running_task_ids
def _try_to_kill_tasks(
self, to_kill: Dict[QueueEntry, str]
) -> Dict[QueueEntry, str]:
fail_to_kill_entries: Dict[QueueEntry, str] = {}
for queue_entry, rev in to_kill.items():
try:
self.proc.kill(queue_entry.stash_rev)
logger.debug(f"Task {rev} had been killed.")
except ProcessLookupError:
fail_to_kill_entries[queue_entry] = rev
return fail_to_kill_entries
def _mark_inactive_tasks_failure(self, remained_entries):
remained_revs: List[str] = []
running_ids = self._get_running_task_ids()
logger.debug(f"Current running tasks ids: {running_ids}.")
for msg, entry in self._iter_processed():
if entry not in remained_entries:
continue
task_id = msg.headers["id"]
if task_id in running_ids:
remained_revs.append(remained_entries[entry])
else:
result: AsyncResult = AsyncResult(task_id)
if not result.ready():
logger.debug(
f"Task id {task_id} rev {remained_entries[entry]} "
"marked as failure."
)
self.celery.backend.mark_as_failure(task_id, None)
if remained_revs:
raise CannotKillTasksError(remained_revs)
def kill(self, revs: Collection[str]) -> None:
to_kill: Set[QueueEntry] = set()
name_dict: Dict[
str, Optional[QueueEntry]
] = self.match_queue_entry_by_name(set(revs), self.iter_active())
missing_rev: List[str] = []
to_kill: Dict[QueueEntry, str] = {}
missing_revs: List[str] = []
for rev, queue_entry in name_dict.items():
if queue_entry is None:
missing_rev.append(rev)
missing_revs.append(rev)
else:
to_kill.add(queue_entry)
to_kill[queue_entry] = rev
if missing_revs:
raise UnresolvedQueueExpNamesError(missing_revs)
if missing_rev:
raise UnresolvedQueueExpNamesError(missing_rev)
fail_to_kill_entries: Dict[QueueEntry, str] = self._try_to_kill_tasks(
to_kill
)
for queue_entry in to_kill:
self.proc.kill(queue_entry.stash_rev)
if fail_to_kill_entries:
self._mark_inactive_tasks_failure(fail_to_kill_entries)
def shutdown(self, kill: bool = False):
self.celery.control.shutdown()
@@ -359,10 +406,11 @@ class LocalCeleryQueue(BaseStashQueue):
) as fobj:
ui.write(fobj.read())
def worker_status(self) -> Dict:
def worker_status(self) -> Dict[str, List[Dict]]:
"""Return the current active celery worker"""
status = self.celery.control.inspect().active() or {}
logger.debug(f"Worker status: {status}")
return status
def clear(self, *args, **kwargs):
+12
View File
@@ -0,0 +1,12 @@
from typing import Collection
from dvc.exceptions import DvcException
class CannotKillTasksError(DvcException):
def __init__(self, revs: Collection[str]):
rev_str = ",".join(revs)
super().__init__(
f"Task '{rev_str}' is initializing, please wait a few seconds "
"until the experiments start running to retry the kill operation."
)
+2 -3
View File
@@ -77,9 +77,8 @@ class TempDirQueue(WorkspaceQueue):
for stash_rev in self.proc:
infofile = self.get_infofile_path(stash_rev)
executor_info = ExecutorInfo.load_json(infofile)
if (
not executor_info.status <= TaskStatus.SUCCESS
and os.path.exists(executor_info.root_dir)
if executor_info.status <= TaskStatus.SUCCESS and os.path.exists(
executor_info.root_dir
):
yield QueueEntry(
self.repo.root_dir,
+4 -2
View File
@@ -1,6 +1,8 @@
import logging
from typing import TYPE_CHECKING, Dict
from scmrepo.exceptions import SCMError
from ..executor.base import ExecutorInfo, TaskStatus
logger = logging.getLogger(__name__)
@@ -39,7 +41,7 @@ def fetch_running_exp_from_temp_dir(
if info.git_url and fetch_refs and info.status > TaskStatus.PREPARING:
def on_diverged(_ref: str, _checkpoint: bool):
return False
return True
executor = TempDirExecutor.from_info(info)
try:
@@ -52,7 +54,7 @@ def fetch_running_exp_from_temp_dir(
result[rev]["last"] = last_rev
if last_rev:
result[last_rev] = info.asdict()
except InvalidRemoteSCMRepo:
except (InvalidRemoteSCMRepo, SCMError):
# ignore stale info files
del result[rev]
return result
+19 -22
View File
@@ -1,9 +1,8 @@
import logging
import sys
from typing import Dict, Iterable, Optional
from dvc.dependency.param import ParamsDependency
from dvc.exceptions import DvcException, InvalidArgumentError
from dvc.exceptions import InvalidArgumentError
from dvc.repo import locked
from dvc.ui import ui
from dvc.utils.cli_parse import to_path_overrides
@@ -29,19 +28,24 @@ def run(
Returns a dict mapping new experiment SHAs to the results
of `repro` for that experiment.
"""
try:
from dvc.utils.hydra import to_hydra_overrides
except ValueError:
if sys.version_info >= (3, 11):
raise DvcException("exp run is not supported in Python >= 3.11")
raise
if run_all:
entries = list(repo.experiments.celery_queue.iter_queued())
return repo.experiments.reproduce_celery(entries, jobs=jobs)
return repo.experiments.reproduce_celery(jobs=jobs)
hydra_sweep = None
if params:
from dvc.utils.hydra import to_hydra_overrides
path_overrides = to_path_overrides(params)
hydra_sweep = any(
x.is_sweep_override()
for param_file in path_overrides
for x in to_hydra_overrides(path_overrides[param_file])
)
if hydra_sweep and not queue:
raise InvalidArgumentError(
"Sweep overrides can't be used without `--queue`"
)
else:
path_overrides = {}
@@ -51,23 +55,16 @@ def run(
# Force `_update_params` even if `--set-param` was not used
path_overrides[hydra_output_file] = []
hydra_sweep = any(
x.is_sweep_override()
for param_file in path_overrides
for x in to_hydra_overrides(path_overrides[param_file])
)
if hydra_sweep and not queue:
raise InvalidArgumentError(
"Sweep overrides can't be used without `--queue`"
)
if not queue:
return repo.experiments.reproduce_one(
targets=targets, params=path_overrides, tmp_dir=tmp_dir, **kwargs
)
if hydra_sweep:
if kwargs.get("name"):
raise InvalidArgumentError(
"Sweep overrides can't be used alongside `--name`"
)
from dvc.utils.hydra import get_hydra_sweeps
sweeps = get_hydra_sweeps(path_overrides)
+208 -100
View File
@@ -3,16 +3,32 @@ from collections import OrderedDict, defaultdict
from datetime import datetime
from enum import Enum
from itertools import chain
from typing import TYPE_CHECKING, Any, Callable, Dict, List, Optional, Union
from typing import (
TYPE_CHECKING,
Any,
Callable,
Dict,
Iterable,
List,
Optional,
Set,
Tuple,
Union,
)
from scmrepo.exceptions import SCMError as InnerScmError
from dvc.repo.metrics.show import _gather_metrics
from dvc.repo.params.show import _gather_params
from dvc.scm import iter_revs
from dvc.scm import SCMError, iter_revs, resolve_rev
from dvc.utils import error_handler, onerror_collect, relpath
from .refs import ExpRefInfo
if TYPE_CHECKING:
from scmrepo.git import Git
from scmrepo.git.objects import GitCommit
from dvc.repo import Repo
logger = logging.getLogger(__name__)
@@ -25,34 +41,49 @@ class ExpStatus(Enum):
Failed = 3
def _is_scm_error(collected_exp: Dict[str, Any]) -> bool:
if "error" in collected_exp and (
isinstance(collected_exp["error"], SCMError)
or isinstance(collected_exp["error"], InnerScmError)
):
return True
return False
def _show_onerror_collect(result: Dict, exception: Exception, *args, **kwargs):
onerror_collect(result, exception, *args, **kwargs)
result["data"] = {}
@error_handler
def _collect_experiment_commit(
def collect_experiment_commit(
repo: "Repo",
exp_rev: str,
status: ExpStatus = ExpStatus.Success,
param_deps=False,
running=None,
running: Optional[Dict[str, Any]] = None,
onerror: Optional[Callable] = None,
):
) -> Dict[str, Any]:
from dvc.dependency import ParamsDependency, RepoDependency
res: Dict[str, Optional[Any]] = defaultdict(dict)
result: Dict[str, Any] = defaultdict(dict)
running = running or {}
for rev in repo.brancher(revs=[exp_rev]):
if rev == "workspace":
if exp_rev != "workspace":
continue
res["timestamp"] = None
result["timestamp"] = None
else:
commit = repo.scm.resolve_commit(rev)
res["timestamp"] = datetime.fromtimestamp(commit.commit_time)
result["timestamp"] = datetime.fromtimestamp(commit.commit_time)
params = _gather_params(
repo, rev=rev, targets=None, deps=param_deps, onerror=onerror
)
if params:
res["params"] = params
result["params"] = params
res["deps"] = {
result["deps"] = {
relpath(dep.fs_path, repo.root_dir): {
"hash": dep.hash_info.value,
"size": dep.meta.size,
@@ -61,7 +92,7 @@ def _collect_experiment_commit(
for dep in repo.index.deps
if not isinstance(dep, (ParamsDependency, RepoDependency))
}
res["outs"] = {
result["outs"] = {
relpath(out.fs_path, repo.root_dir): {
"hash": out.hash_info.value,
"size": out.meta.size,
@@ -73,14 +104,14 @@ def _collect_experiment_commit(
if not (out.is_metric or out.is_plot)
}
res["status"] = status.name
result["status"] = status.name
if status == ExpStatus.Running:
res["executor"] = running.get(exp_rev, {}).get("location", None)
result["executor"] = running.get(exp_rev, {}).get("location", None)
else:
res["executor"] = None
result["executor"] = None
if status == ExpStatus.Failed:
res["error"] = {
result["error"] = {
"msg": "Experiment run failed.",
"type": "",
}
@@ -89,96 +120,157 @@ def _collect_experiment_commit(
vals = _gather_metrics(
repo, targets=None, rev=rev, recursive=False, onerror=onerror
)
res["metrics"] = vals
result["metrics"] = vals
return res
return result
def _collect_experiment_branch(
res,
repo,
branch,
baseline,
onerror: Optional[Callable] = None,
running=None,
def _collect_complete_experiment(
repo: "Repo",
baseline: str,
exp_rev: str,
running: Dict[str, Any],
revs: List[str],
**kwargs,
):
from dvc.scm import resolve_rev
) -> Dict[str, Dict[str, Any]]:
results: "OrderedDict[str, Dict[str, Any]]" = OrderedDict()
checkpoint: bool = True if len(revs) > 1 else False
prev = ""
exp_rev = resolve_rev(repo.scm, branch)
prev = None
revs = list(repo.scm.branch_revs(exp_rev, baseline))
for rev in revs:
status = ExpStatus.Running if rev in running else ExpStatus.Success
collected_exp = _collect_experiment_commit(
collected_exp = collect_experiment_commit(
repo,
rev,
onerror=onerror,
status=status,
running=running,
**kwargs,
)
if len(revs) > 1:
if _is_scm_error(collected_exp):
return {}
if checkpoint:
exp = {"checkpoint_tip": exp_rev}
if prev:
res[prev]["data"][ # type: ignore[unreachable]
results[prev]["data"][ # type: ignore[unreachable]
"checkpoint_parent"
] = rev
if rev in res:
res[rev]["data"].update(exp)
res.move_to_end(rev)
if rev in results:
results[rev]["data"].update(exp)
results.move_to_end(rev)
else:
exp.update(collected_exp["data"])
else:
exp = collected_exp["data"]
if rev not in res:
res[rev] = {"data": exp}
if rev not in results:
results[rev] = {"data": exp}
prev = rev
if len(revs) > 1:
res[prev]["data"]["checkpoint_parent"] = baseline
return res
if checkpoint and prev:
results[prev]["data"]["checkpoint_parent"] = baseline
return results
def get_names(repo: "Repo", result: Dict[str, Dict[str, Any]]):
def _collect_branch(
repo: "Repo",
baseline: str,
running: Dict[str, Any],
**kwargs,
) -> Dict[str, Dict[str, Any]]:
results: Dict[str, Dict[str, Any]] = OrderedDict()
status = ExpStatus.Running if baseline in running else ExpStatus.Success
results["baseline"] = collect_experiment_commit(
repo,
baseline,
status=status,
running=running,
**kwargs,
)
if baseline == "workspace" or _is_scm_error(results["baseline"]):
return results
ref_info = ExpRefInfo(baseline_sha=baseline)
commits: List[Tuple[str, "GitCommit", str, List[str]]] = []
for ref in repo.scm.iter_refs(base=str(ref_info)):
try:
commit = repo.scm.resolve_commit(ref)
exp_rev = resolve_rev(repo.scm, ref)
revs = list(repo.scm.branch_revs(exp_rev, baseline))
except (SCMError, InnerScmError):
continue
commits.append((ref, commit, exp_rev, revs))
for exp_ref, _, exp_rev, revs in sorted(
commits, key=lambda x: x[1].commit_time, reverse=True
):
ref_info = ExpRefInfo.from_ref(exp_ref)
assert ref_info.baseline_sha == baseline
collected_exp = _collect_complete_experiment(
repo,
baseline=baseline,
exp_rev=exp_rev,
running=running,
revs=revs,
**kwargs,
)
if _is_scm_error(collected_exp):
continue
results.update(collected_exp)
return results
def get_branch_names(
scm: "Git", baseline_set: Iterable[str]
) -> Dict[str, Optional[str]]:
names: Dict[str, Optional[str]] = {}
for base in [
f"refs/exps/{baseline[:2]}/{baseline[2:]}/"
for baseline in baseline_set
] + ["refs/heads/", "refs/tags/"]:
for ref in scm.iter_refs(base=base):
if ref:
try:
rev = scm.get_ref(ref)
names[rev] = ref[len(base) :]
except KeyError:
logger.debug("unreosolved ref %s", ref)
logger.debug("found refs for revs: %s", names)
return names
def update_names(
repo: "Repo",
branch_names: Dict[str, Optional[str]],
result: Dict[str, Dict[str, Any]],
):
rev_set = set()
baseline_set = set()
for baseline in result:
for rev in result[baseline]:
if rev == "baseline":
rev = baseline
baseline_set.add(rev)
if rev != "workspace":
rev_set.add(rev)
names: Dict[str, Optional[str]] = {}
for base in ("refs/tags/", "refs/heads/"):
if rev_set:
names.update(
(rev, ref[len(base) :])
for rev, ref in repo.scm.describe(
baseline_set, base=base
).items()
if ref is not None
)
rev_set.difference_update(names.keys())
if rev_set:
rev_set.difference_update(branch_names.keys())
exact_name = repo.experiments.get_exact_name(rev_set)
for baseline, baseline_results in result.items():
name_set: Set[str] = set()
for rev, rev_result in baseline_results.items():
name: Optional[str] = None
if rev == "baseline":
rev = baseline
if rev == "workspace":
continue
name = names.get(rev, None)
name = name or exact_name[rev]
if name:
name = branch_names.get(rev, None) or exact_name[rev]
if name and name not in name_set:
name_set.add(name)
rev_result["data"]["name"] = name
# flake8: noqa: C901
def _collect_active_experiment(
repo: "Repo",
found_revs: Dict[str, List[str]],
@@ -194,13 +286,16 @@ def _collect_active_experiment(
if entry.baseline_rev in found_revs and (
stash_rev not in running or not running[stash_rev].get("last")
):
result[entry.baseline_rev][stash_rev] = _collect_experiment_commit(
collected_exp = collect_experiment_commit(
repo,
stash_rev,
status=ExpStatus.Running,
running=running,
**kwargs,
)
if _is_scm_error(collected_exp):
continue
result[entry.baseline_rev][stash_rev] = collected_exp
return result
@@ -214,13 +309,16 @@ def _collect_queued_experiment(
for entry in repo.experiments.celery_queue.iter_queued():
stash_rev = entry.stash_rev
if entry.baseline_rev in found_revs:
result[entry.baseline_rev][stash_rev] = _collect_experiment_commit(
collected_exp = collect_experiment_commit(
repo,
stash_rev,
status=ExpStatus.Queued,
running=running,
**kwargs,
)
if _is_scm_error(collected_exp):
continue
result[entry.baseline_rev][stash_rev] = collected_exp
return result
@@ -235,14 +333,16 @@ def _collect_failed_experiment(
entry = queue_done_result.entry
stash_rev = entry.stash_rev
if entry.baseline_rev in found_revs:
experiment = _collect_experiment_commit(
collected_exp = collect_experiment_commit(
repo,
stash_rev,
status=ExpStatus.Failed,
running=running,
**kwargs,
)
result[entry.baseline_rev][stash_rev] = experiment
if _is_scm_error(collected_exp):
continue
result[entry.baseline_rev][stash_rev] = collected_exp
return result
@@ -254,6 +354,40 @@ def update_new(
to_dict[baseline][rev] = to_dict[baseline].get(rev, experiment)
def move_properties_to_head(result: Dict[str, Dict[str, Dict[str, Any]]]):
for _, baseline_results in result.items():
checkpoint: bool = False
head: Dict[str, Any] = {}
for rev, rev_data in baseline_results.items():
if (
"data" not in rev_data
or rev_data["data"].get("checkpoint_tip", None) is None
):
checkpoint = False
head = {}
continue
rev_result: Dict[str, Any] = rev_data["data"]
if (
checkpoint is True
and rev_result["checkpoint_tip"] == head["checkpoint_tip"]
):
if "name" in rev_result and "name" not in head:
head["name"] = rev_result["name"]
del rev_result["name"]
if rev_result["executor"]:
if not head["executor"]:
head["executor"] = rev_result["executor"]
rev_result["executor"] = None
if rev_result["status"] == ExpStatus.Running.name:
head["status"] = ExpStatus.Running.name
rev_result["status"] = ExpStatus.Success.name
else:
if rev_result["checkpoint_tip"] == rev:
head = rev_result
checkpoint = True
def show(
repo: "Repo",
all_branches=False,
@@ -272,8 +406,7 @@ def show(
if repo.scm.no_commits:
return {}
if onerror is None:
onerror = onerror_collect
onerror = onerror or _show_onerror_collect
res: Dict[str, Dict] = defaultdict(OrderedDict)
@@ -286,6 +419,7 @@ def show(
found_revs.update(
iter_revs(repo.scm, revs, num, all_branches, all_tags, all_commits)
)
branch_names = get_branch_names(repo.scm, found_revs)
running: Dict[str, Dict] = repo.experiments.get_running_exps(
fetch_refs=fetch_running
@@ -316,7 +450,6 @@ def show(
repo,
found_revs,
running,
sha_only=sha_only,
param_deps=param_deps,
onerror=onerror,
)
@@ -324,49 +457,24 @@ def show(
else {}
)
for rev in found_revs:
status = ExpStatus.Running if rev in running else ExpStatus.Success
res[rev]["baseline"] = _collect_experiment_commit(
for baseline in found_revs:
res[baseline] = _collect_branch(
repo,
rev,
status=status,
param_deps=param_deps,
baseline,
running=running,
param_deps=param_deps,
onerror=onerror,
)
if rev == "workspace":
continue
ref_info = ExpRefInfo(baseline_sha=rev)
commits = [
(ref, repo.scm.resolve_commit(ref))
for ref in repo.scm.iter_refs(base=str(ref_info))
]
for exp_ref, _ in sorted(
commits, key=lambda x: x[1].commit_time, reverse=True
):
ref_info = ExpRefInfo.from_ref(exp_ref)
assert ref_info.baseline_sha == rev
_collect_experiment_branch(
res[rev],
repo,
exp_ref,
rev,
param_deps=param_deps,
running=running,
onerror=onerror,
)
if not hide_failed:
update_new(res, failed_experiments)
update_new(res, failed_experiments)
update_new(res, active_experiment)
if not hide_queued:
update_new(res, queued_experiment)
update_new(res, queued_experiment)
if not sha_only:
get_names(repo, res)
update_names(repo, branch_names, res)
move_properties_to_head(res)
return res
+2 -15
View File
@@ -17,20 +17,6 @@ if TYPE_CHECKING:
logger = logging.getLogger(__name__)
def _fetch_worktree(repo, remote):
from dvc_data.index import save
index = repo.index.data["repo"]
for key, entry in index.iteritems():
entry.fs = remote.fs
entry.path = remote.fs.path.join(
remote.path,
*key,
)
save(index)
return len(index)
@locked
def fetch(
self,
@@ -59,6 +45,7 @@ def fetch(
remote is configured
"""
from dvc.repo.imports import save_imports
from dvc.repo.worktree import fetch_worktree
from dvc_data.hashfile.transfer import TransferResult
if isinstance(targets, str):
@@ -67,7 +54,7 @@ def fetch(
with suppress(NoRemoteError):
_remote = self.cloud.get_remote(name=remote)
if _remote.worktree:
return _fetch_worktree(self, _remote)
return fetch_worktree(self, _remote)
failed_count = 0
+3
View File
@@ -97,6 +97,9 @@ def imp_url(
else:
stage.run(jobs=jobs, no_download=no_download)
if not no_exec and stage.deps[0].fs.version_aware:
stage.outs[0].can_push = False
stage.frozen = frozen
dvcfile.dump(stage)
+2 -2
View File
@@ -44,7 +44,7 @@ def unfetched_view(
return True
unfetched = index.targets_view(targets, filter_fn=need_fetch, **kwargs)
unfetched = index.targets_view(targets, stage_filter=need_fetch, **kwargs)
return unfetched, changed_deps
@@ -53,7 +53,7 @@ def partial_view(
) -> "IndexView":
return index.targets_view(
targets,
filter_fn=lambda s: s.is_partial_import,
stage_filter=lambda s: s.is_partial_import,
**kwargs,
)
+59 -36
View File
@@ -7,8 +7,10 @@ from typing import (
Iterable,
Iterator,
List,
NamedTuple,
Optional,
Set,
Tuple,
)
from funcy import cached_property, nullcontext
@@ -150,25 +152,35 @@ class Index:
def targets_view(
self,
targets: "TargetType",
filter_fn: Optional[Callable[["Stage"], bool]] = None,
targets: Optional["TargetType"],
stage_filter: Optional[Callable[["Stage"], bool]] = None,
outs_filter: Optional[Callable[["Output"], bool]] = None,
**kwargs: Any,
) -> "IndexView":
"""Return read-only view of index for the specified targets.
Args:
targets: Targets to collect
filter_fn: Optional stage filter to be applied after collecting
stage_filter: Optional stage filter to be applied after collecting
targets.
outs_filter: Optional output filter to be applied after collecting
targets.
Additional kwargs will be passed into the stage collector.
Note:
If both stage_filter and outs_filter are provided, stage_filter
will be applied first, and the resulting view will only contain
outputs from stages that matched stage_filter. Outputs from stages
that did not match will be excluded from the view (whether or not
the output would have matched outs_filter).
"""
stage_infos = [
stage_info
for stage_info in self._collect_targets(targets, **kwargs)
if not filter_fn or filter_fn(stage_info.stage)
if not stage_filter or stage_filter(stage_info.stage)
]
return IndexView(self, stage_infos)
return IndexView(self, stage_infos, outs_filter=outs_filter)
@property
def outs(self) -> Iterator["Output"]:
@@ -242,15 +254,8 @@ class Index:
workspace, key = out.index_key
data_index = by_workspace[workspace]
if out.files:
out.obj = out.get_obj()
entry = out.get_entry()
entry.key = key
if out.stage.is_import and not out.stage.is_repo_import:
entry.fs = out.stage.deps[0].fs
entry.path = out.stage.deps[0].fs_path
entry.meta = out.stage.deps[0].meta
data_index.add(entry)
return dict(by_workspace)
@@ -263,6 +268,7 @@ class Index:
force: bool = False,
recursive: bool = False,
jobs: int = None,
push: bool = False,
) -> "ObjectContainer":
from collections import defaultdict
@@ -276,6 +282,7 @@ class Index:
force=force,
jobs=jobs,
filter_info=filter_info,
push=push,
).items():
used[odb].update(objs)
return used
@@ -345,17 +352,26 @@ class Index:
return dict_md5(self.dumpd())
class _DataPrefixes(NamedTuple):
explicit: Set["DataIndexKey"]
recursive: Set["DataIndexKey"]
class IndexView:
"""Read-only view of Index.data using filtered stages."""
def __init__( # pylint: disable=redefined-outer-name
self, index: Index, stage_infos: Iterable["StageInfo"]
self,
index: Index,
stage_infos: Iterable["StageInfo"],
outs_filter: Optional[Callable[["Output"], bool]],
):
self._index = index
self._stage_infos = stage_infos
# NOTE: stage_infos might have the same stage multiple times but with
# different filter_info
self._stages = list({stage for stage, _ in stage_infos})
self._outs_filter = outs_filter
def __len__(self) -> int:
return len(self._stages)
@@ -384,30 +400,32 @@ class IndexView:
yield from stage.deps
@property
def outs(self) -> Iterator["Output"]:
outs = set()
def _filtered_outs(self) -> Iterator[Tuple["Output", Optional[str]]]:
for stage, filter_info in self._stage_infos:
for out in stage.filter_outs(filter_info):
outs.add(out)
yield from outs
if not self._outs_filter or self._outs_filter(out):
yield out, filter_info
@property
def outs(self) -> Iterator["Output"]:
yield from {out for (out, _) in self._filtered_outs}
@cached_property
def _data_prefixes(self) -> Dict[str, Set["DataIndexKey"]]:
def _data_prefixes(self) -> Dict[str, "_DataPrefixes"]:
from collections import defaultdict
prefixes: Dict[str, Set["DataIndexKey"]] = defaultdict(set)
for stage, filter_info in self._stage_infos:
for out in stage.filter_outs(filter_info):
workspace, key = out.index_key
if filter_info and out.fs.path.isin(filter_info, out.fs_path):
key = (
*key,
out.fs.path.relparts(filter_info, out.fs_path),
)
prefixes[workspace].add(key)
prefixes[workspace].update(
key[:i] for i in range(len(key), 0, -1)
)
prefixes: Dict[str, "_DataPrefixes"] = defaultdict(
lambda: _DataPrefixes(set(), set())
)
for out, filter_info in self._filtered_outs:
workspace, key = out.index_key
if filter_info and out.fs.path.isin(filter_info, out.fs_path):
key = key + out.fs.path.relparts(filter_info, out.fs_path)
if out.meta.isdir:
prefixes[workspace].recursive.add(key)
prefixes[workspace].explicit.update(
key[:i] for i in range(len(key), 0, -1)
)
return prefixes
@cached_property
@@ -418,14 +436,19 @@ class IndexView:
def key_filter(workspace: str, key: "DataIndexKey"):
try:
return key in self._data_prefixes[workspace]
prefixes = self._data_prefixes[workspace]
return key in prefixes.explicit or any(
key[: len(prefix)] == prefix
for prefix in prefixes.recursive
)
except KeyError:
return False
return {
workspace: view(index, partial(key_filter, workspace))
for workspace, index in self._index.data.items()
}
data = {}
for workspace, data_index in self._index.data.items():
data_index.load()
data[workspace] = view(data_index, partial(key_filter, workspace))
return data
if __name__ == "__main__":
-19
View File
@@ -1,19 +0,0 @@
import logging
from typing import TYPE_CHECKING, Optional
logger = logging.getLogger(__name__)
if TYPE_CHECKING:
from dvc.output import Output
def summary_fs_path(out: "Output") -> Optional[str]:
from dvc.output import Output
assert out.live
has_summary = True
if isinstance(out.live, dict):
has_summary = out.live.get(Output.PARAM_LIVE_SUMMARY, True)
if has_summary:
return out.fs.path.with_suffix(out.fs_path, ".json")
return None
+1 -6
View File
@@ -8,7 +8,6 @@ from dvc.fs.dvc import DVCFileSystem
from dvc.output import Output
from dvc.repo import locked
from dvc.repo.collect import StrPaths, collect
from dvc.repo.live import summary_fs_path
from dvc.scm import NoSCMError
from dvc.utils import error_handler, errored_revisions, onerror_collect
from dvc.utils.collections import ensure_list
@@ -18,7 +17,7 @@ logger = logging.getLogger(__name__)
def _is_metric(out: Output) -> bool:
return bool(out.metric) or bool(out.live)
return bool(out.metric)
def _to_fs_paths(metrics: List[Output]) -> StrPaths:
@@ -26,10 +25,6 @@ def _to_fs_paths(metrics: List[Output]) -> StrPaths:
for out in metrics:
if out.metric:
result.append(out.repo.dvcfs.from_os_path(out.fs_path))
elif out.live:
fs_path = summary_fs_path(out)
if fs_path:
result.append(out.repo.dvcfs.from_os_path(fs_path))
return result
+21 -12
View File
@@ -14,11 +14,12 @@ from typing import (
List,
Optional,
Set,
Union,
)
import dpath.options
import dpath.util
from funcy import cached_property, first, project
from funcy import cached_property, distinct, first, project
from dvc.exceptions import DvcException
from dvc.utils import error_handler, errored_revisions, onerror_collect
@@ -265,7 +266,7 @@ class Plots:
def _is_plot(out: "Output") -> bool:
return bool(out.plot) or bool(out.live)
return bool(out.plot)
def _resolve_data_sources(plots_data: Dict):
@@ -313,16 +314,18 @@ def _get_data_targets(definitions: Dict):
def infer_data_sources(plot_id, config=None):
def _deduplicate(lst: List):
return list({elem: None for elem in lst}.keys())
y = config.get("y", None)
if isinstance(y, dict):
sources = list(y.keys())
else:
sources = [plot_id]
return _deduplicate(source for source in sources)
x = config.get("x", None)
if isinstance(x, dict):
sources.append(first(x.keys()))
return distinct(source for source in sources)
def _matches(targets, config_file, plot_id):
@@ -444,16 +447,22 @@ def _collect_pipeline_files(repo, targets: List[str], props, onerror=None):
if isinstance(dvcfile, PipelineFile):
dvcfile_path = _relpath(repo.dvcfs, dvcfile.path)
dvcfile_defs = dvcfile.load().get("plots", {})
dvcfile_defs_dict: Dict[str, Union[Dict, None]] = {}
if isinstance(dvcfile_defs, list):
dvcfile_defs = {
k: v for elem in dvcfile_defs for k, v in elem.items()
}
for elem in dvcfile_defs:
if isinstance(elem, str):
dvcfile_defs_dict[elem] = None
else:
k, v = list(elem.items())[0]
dvcfile_defs_dict[k] = v
else:
dvcfile_defs_dict = dvcfile_defs
resolved = _resolve_definitions(
repo.dvcfs,
targets,
props,
dvcfile_path,
dvcfile_defs,
dvcfile_defs_dict,
onerror=onerror,
)
dpath.util.merge(
@@ -546,7 +555,7 @@ def parse(fs, path, props=None, **kwargs):
return _load_sv(path=path, fs=fs, delimiter="\t", header=header)
if extension in LOADERS or extension in (".yml", ".yaml"):
return LOADERS[extension](path=path, fs=fs)
if extension in (".jpeg", ".jpg", ".gif", ".png"):
if extension in (".jpeg", ".jpg", ".gif", ".png", ".svg"):
with fs.open(path, "rb") as fd:
return fd.read()
raise PlotMetricTypeError(path)
@@ -555,7 +564,7 @@ def parse(fs, path, props=None, **kwargs):
def _plot_props(out: "Output") -> Dict:
from dvc.schema import PLOT_PROPS
if not (out.plot or out.live):
if not (out.plot):
raise NotAPlotError(out)
if isinstance(out.plot, list):
raise DvcException("Multiple plots per data file not supported.")
+4 -43
View File
@@ -9,48 +9,6 @@ if TYPE_CHECKING:
from dvc_objects.db.base import ObjectDB
def _push_worktree(repo, remote):
from dvc_data.index import checkout
from dvc_data.index.save import build_tree
index = repo.index.data["repo"]
checkout(index, remote.path, remote.fs)
for stage in repo.index.stages:
for out in stage.outs:
if not out.use_cache:
continue
if not out.is_in_repo:
continue
workspace, key = out.index_key
index = repo.index.data[workspace]
entry = index[key]
if out.isdir():
old_tree = out.get_obj()
entry.hash_info = old_tree.hash_info
entry.meta = out.meta
for subkey, entry in index.iteritems(key):
if entry.meta.isdir:
continue
fs_path = repo.fs.path.join(repo.root_dir, *subkey)
_, hash_info = old_tree.get(
repo.fs.path.relparts(fs_path, out.fs_path)
)
entry.hash_info = hash_info
tree_meta, new_tree = build_tree(index, key)
out.obj = new_tree
out.hash_info = new_tree.hash_info
out.meta = tree_meta
else:
out.hash_info = entry.hash_info
out.meta = entry.meta
stage.dvcfile.dump(stage, with_files=True, update_pipeline=False)
return len(index)
@locked
def push(
self,
@@ -68,9 +26,11 @@ def push(
odb: Optional["ObjectDB"] = None,
include_imports=False,
):
from dvc.repo.worktree import push_worktree
_remote = self.cloud.get_remote(name=remote)
if _remote.worktree:
return _push_worktree(self, _remote)
return push_worktree(self, _remote)
used_run_cache = (
self.stage_cache.push(remote, odb=odb) if run_cache else []
@@ -93,6 +53,7 @@ def push(
recursive=recursive,
used_run_cache=used_run_cache,
revs=revs,
push=True,
)
pushed = len(used_run_cache)
-6
View File
@@ -72,12 +72,6 @@ def _get_stage_files(stage: "Stage") -> typing.Iterator[str]:
for out in stage.outs:
if not out.use_scm_ignore and out.is_in_repo:
yield out.fs_path
if out.live:
from dvc.repo.live import summary_fs_path
summary = summary_fs_path(out)
if summary:
yield summary
def _track_stage(stage: "Stage") -> None:
+1
View File
@@ -89,6 +89,7 @@ def _cloud_status(
remote=remote,
jobs=jobs,
recursive=recursive,
push=True,
)
ret = {}
+121
View File
@@ -0,0 +1,121 @@
from typing import TYPE_CHECKING, Optional
from dvc.fs.callbacks import Callback
if TYPE_CHECKING:
from dvc.cloud import Remote
from dvc.index import Index, IndexView
from dvc.output import Output
from dvc.repo import Repo
from dvc.stage import Stage
from dvc.types import TargetType
def worktree_view(
index: "Index",
targets: Optional["TargetType"] = None,
push: bool = False,
**kwargs,
) -> "IndexView":
"""Return view of data that can be stored in worktree remotes.
Args:
targets: Optional targets.
push: Whether the view should be restricted to pushable data only.
Additional kwargs will be passed into target collection.
"""
def stage_filter(stage: "Stage") -> bool:
if push and stage.is_repo_import:
return False
return True
def outs_filter(out: "Output") -> bool:
if (
not out.is_in_repo
or not out.use_cache
or (push and not out.can_push)
):
return False
return True
return index.targets_view(
targets,
stage_filter=stage_filter,
outs_filter=outs_filter,
**kwargs,
)
def fetch_worktree(repo: "Repo", remote: "Remote") -> int:
from dvc_data.index import save
view = worktree_view(repo.index)
index = view.data["repo"]
for key, entry in index.iteritems():
entry.fs = remote.fs
entry.path = remote.fs.path.join(
remote.path,
*key,
)
total = len(index)
with Callback.as_tqdm_callback(
unit="file", desc="Fetch", disable=total == 0
) as cb:
cb.set_size(total)
return save(index, callback=cb)
def push_worktree(repo: "Repo", remote: "Remote") -> int:
from dvc_data.index import checkout
from dvc_data.index.save import build_tree
view = worktree_view(repo.index, push=True)
index = view.data["repo"]
total = len(index)
with Callback.as_tqdm_callback(
unit="file", desc="Push", disable=total == 0
) as cb:
cb.set_size(total)
pushed = checkout(
index,
remote.path,
remote.fs,
latest_only=False,
callback=cb,
)
for stage in view.stages:
for out in stage.outs:
if not out.use_cache:
continue
if not out.is_in_repo:
continue
workspace, key = out.index_key
index = repo.index.data[workspace]
entry = index[key]
if out.isdir():
old_tree = out.get_obj()
entry.hash_info = old_tree.hash_info
entry.meta = out.meta
for subkey, entry in index.iteritems(key):
if entry.meta.isdir:
continue
fs_path = repo.fs.path.join(repo.root_dir, *subkey)
_, hash_info = old_tree.get(
repo.fs.path.relparts(fs_path, out.fs_path)
)
entry.hash_info = hash_info
tree_meta, new_tree = build_tree(index, key)
out.obj = new_tree
out.hash_info = new_tree.hash_info
out.meta = tree_meta
else:
out.hash_info = entry.hash_info
out.meta = entry.meta
stage.dvcfile.dump(stage, with_files=True, update_pipeline=False)
return pushed
+3 -10
View File
@@ -51,6 +51,7 @@ OUT_PSTAGE_DETAILED_SCHEMA = {
Output.PARAM_PERSIST: bool,
Output.PARAM_CHECKPOINT: bool,
Output.PARAM_REMOTE: str,
Output.PARAM_PUSH: bool,
}
}
@@ -67,13 +68,6 @@ PLOT_PROPS = {
PLOT_PROPS_SCHEMA = {**OUT_PSTAGE_DETAILED_SCHEMA[str], **PLOT_PROPS}
PLOT_PSTAGE_SCHEMA = {str: Any(PLOT_PROPS_SCHEMA, [PLOT_PROPS_SCHEMA])}
LIVE_PROPS = {
Output.PARAM_LIVE_SUMMARY: bool,
Output.PARAM_LIVE_HTML: bool,
}
LIVE_PROPS_SCHEMA = {**PLOT_PROPS_SCHEMA, **LIVE_PROPS}
LIVE_PSTAGE_SCHEMA = {str: LIVE_PROPS_SCHEMA}
PARAM_PSTAGE_NON_DEFAULT_SCHEMA = {str: [str]}
VARS_SCHEMA = [str, dict]
@@ -93,7 +87,6 @@ STAGE_DEFINITION = {
Any(str, OUT_PSTAGE_DETAILED_SCHEMA)
],
Optional(StageParams.PARAM_PLOTS): [Any(str, PLOT_PSTAGE_SCHEMA)],
Optional(StageParams.PARAM_LIVE): Any(str, LIVE_PSTAGE_SCHEMA),
}
@@ -111,7 +104,7 @@ def either_or(primary, fallback, fallback_includes=None):
PLOT_DEFINITION = {
Output.PARAM_PLOT_X: str,
Output.PARAM_PLOT_X: Any(str, {str: str}),
Output.PARAM_PLOT_Y: Any(str, [str], {str: Any(str, [str])}),
Output.PARAM_PLOT_X_LABEL: str,
Output.PARAM_PLOT_Y_LABEL: str,
@@ -127,7 +120,7 @@ SINGLE_PIPELINE_STAGE_SCHEMA = {
str: either_or(STAGE_DEFINITION, FOREACH_IN, [FOREACH_KWD, DO_KWD])
}
MULTI_STAGE_SCHEMA = {
PLOTS: Any(SINGLE_PLOT_SCHEMA, [SINGLE_PLOT_SCHEMA]),
PLOTS: Any(SINGLE_PLOT_SCHEMA, [Any(str, SINGLE_PLOT_SCHEMA)]),
STAGES: SINGLE_PIPELINE_STAGE_SCHEMA,
VARS_KWD: VARS_SCHEMA,
}
+36 -23
View File
@@ -113,10 +113,11 @@ def restore_fields(stage):
stage.meta = old.meta
stage.desc = old.desc
old_fields = {out.def_path: (out.annot, out.remote) for out in old.outs}
old_outs = {out.def_path: out for out in old.outs}
for out in stage.outs:
if out_fields := old_fields.get(out.def_path, None):
out.annot, out.remote = out_fields
old_out = old_outs.get(out.def_path, None)
if old_out is not None:
out.restore_fields(old_out)
class Stage(params.StageParams):
@@ -280,22 +281,7 @@ class Stage(params.StageParams):
def _read_env(self, out, checkpoint_func=None) -> Env:
env: Env = {}
if out.live:
from dvc.env import DVCLIVE_HTML, DVCLIVE_PATH, DVCLIVE_SUMMARY
from dvc.output import Output
from dvc.schema import LIVE_PROPS
env[DVCLIVE_PATH] = relpath(out.fs_path, self.wdir)
if isinstance(out.live, dict):
config = project(out.live, LIVE_PROPS)
env[DVCLIVE_SUMMARY] = str(
int(config.get(Output.PARAM_LIVE_SUMMARY, True))
)
env[DVCLIVE_HTML] = str(
int(config.get(Output.PARAM_LIVE_HTML, True))
)
elif out.checkpoint and checkpoint_func:
if out.checkpoint and checkpoint_func:
from dvc.env import DVC_CHECKPOINT
env.update({DVC_CHECKPOINT: "1"})
@@ -379,7 +365,7 @@ class Stage(params.StageParams):
def remove_outs(self, ignore_remove=False, force=False):
"""Used mainly for `dvc remove --outs` and :func:`Stage.reproduce`."""
for out in self.outs:
if (out.persist or out.checkpoint or out.live) and not force:
if (out.persist or out.checkpoint) and not force:
out.unprotect()
continue
@@ -477,10 +463,12 @@ class Stage(params.StageParams):
logger.debug("Computed %s md5: '%s'", self, m)
return m
def save(self, allow_missing=False):
def save(self, allow_missing: bool = False, merge_versioned: bool = False):
self.save_deps(allow_missing=allow_missing)
self.save_outs(allow_missing=allow_missing)
self.save_outs(
allow_missing=allow_missing, merge_versioned=merge_versioned
)
self.md5 = self.compute_md5()
self.repo.stage_cache.save(self)
@@ -495,15 +483,40 @@ class Stage(params.StageParams):
if not allow_missing:
raise
def save_outs(self, allow_missing=False):
def save_outs(
self, allow_missing: bool = False, merge_versioned: bool = False
):
from dvc.output import OutputDoesNotExistError
from .exceptions import StageFileDoesNotExistError, StageNotFound
if merge_versioned:
try:
old = self.reload()
old_outs = {out.def_path: out for out in old.outs}
merge_versioned = any(
(
out.files is not None
or (
out.meta is not None
and out.meta.version_id is not None
)
)
for out in old_outs.values()
)
except (StageFileDoesNotExistError, StageNotFound):
merge_versioned = False
for out in self.outs:
try:
out.save()
except OutputDoesNotExistError:
if not (allow_missing or out.checkpoint):
raise
if merge_versioned:
old_out = old_outs.get(out.def_path)
if old_out is not None:
out.merge_version_meta(old_out)
def ignore_outs(self):
for out in self.outs:
-1
View File
@@ -97,7 +97,6 @@ class StageLoader(Mapping):
stage.PARAM_OUTS,
stage.PARAM_METRICS,
stage.PARAM_PLOTS,
stage.PARAM_LIVE,
],
)
stage.outs = lcat(
-4
View File
@@ -20,10 +20,6 @@ class CheckpointKilledError(StageCmdFailedError):
pass
class LiveKilledError(StageCmdFailedError):
pass
@dataclass
class MonitorTask:
stage: "Stage"
-1
View File
@@ -12,4 +12,3 @@ class StageParams:
PARAM_METRICS = "metrics"
PARAM_PLOTS = "plots"
PARAM_DESC = "desc"
PARAM_LIVE = "live"
+6 -10
View File
@@ -29,6 +29,7 @@ PARAM_PERSIST = Output.PARAM_PERSIST
PARAM_CHECKPOINT = Output.PARAM_CHECKPOINT
PARAM_DESC = Annotation.PARAM_DESC
PARAM_REMOTE = Output.PARAM_REMOTE
PARAM_PUSH = Output.PARAM_PUSH
DEFAULT_PARAMS_FILE = ParamsDependency.DEFAULT_PARAMS_FILE
@@ -52,10 +53,10 @@ def _get_flags(out):
# `out.plot` is in the same order as is in the file when read
# and, should be dumped as-is without any sorting
yield from out.plot.items()
if out.live and isinstance(out.live, dict):
yield from out.live.items()
if out.remote:
yield PARAM_REMOTE, out.remote
if not out.can_push:
yield PARAM_PUSH, False
def _serialize_out(out):
@@ -65,19 +66,15 @@ def _serialize_out(out):
@no_type_check
def _serialize_outs(outputs: List[Output]):
outs, metrics, plots, live = [], [], [], None
outs, metrics, plots = [], [], []
for out in sort_by_path(outputs):
bucket = outs
if out.plot:
bucket = plots
elif out.metric:
bucket = metrics
elif out.live:
assert live is None
live = _serialize_out(out)
continue
bucket.append(_serialize_out(out))
return outs, metrics, plots, live
return outs, metrics, plots
def _serialize_params_keys(params):
@@ -126,7 +123,7 @@ def to_pipeline_file(stage: "PipelineStage"):
deps = sorted(d.def_path for d in deps)
params = _serialize_params_keys(params)
outs, metrics, plots, live = _serialize_outs(stage.outs)
outs, metrics, plots = _serialize_outs(stage.outs)
cmd = stage.cmd
assert cmd, (
@@ -142,7 +139,6 @@ def to_pipeline_file(stage: "PipelineStage"):
(stage.PARAM_OUTS, outs),
(stage.PARAM_METRICS, metrics),
(stage.PARAM_PLOTS, plots),
(stage.PARAM_LIVE, live),
(stage.PARAM_FROZEN, stage.frozen),
(stage.PARAM_ALWAYS_CHANGED, stage.always_changed),
(stage.PARAM_META, stage.meta),
+1 -43
View File
@@ -2,7 +2,7 @@ import os
import pathlib
from typing import TYPE_CHECKING, Union
from funcy import concat, first, lsplit, rpartial, without
from funcy import concat, first, lsplit, rpartial
from dvc.annotations import ANNOTATION_FIELDS
from dvc.exceptions import InvalidArgumentError
@@ -66,8 +66,6 @@ def fill_stage_outputs(stage, **kwargs):
stage.outs = []
stage.outs += _load_live_output(stage, **kwargs)
for key in keys:
stage.outs += loads_from(
stage,
@@ -80,34 +78,6 @@ def fill_stage_outputs(stage, **kwargs):
)
def _load_live_output(
stage,
live=None,
live_no_cache=None,
live_summary=False,
live_html=False,
**kwargs,
):
from dvc.output import Output, loads_from
outs = []
if live or live_no_cache:
assert bool(live) != bool(live_no_cache)
path = live or live_no_cache
outs += loads_from(
stage,
[path],
use_cache=not bool(live_no_cache),
live={
Output.PARAM_LIVE_SUMMARY: live_summary,
Output.PARAM_LIVE_HTML: live_html,
},
)
return outs
def fill_stage_dependencies(
stage, deps=None, erepo=None, params=None, fs_config=None
):
@@ -274,7 +244,6 @@ def prepare_file_path(kwargs):
kwargs.get("outs_persist", []),
kwargs.get("outs_persist_no_cache", []),
kwargs.get("checkpoints", []),
without([kwargs.get("live", None)], None),
)
)
@@ -332,15 +301,4 @@ def validate_kwargs(single_stage: bool = False, fname: str = None, **kwargs):
if single_stage:
kwargs.pop("name", None)
if kwargs.get("live") and kwargs.get("live_no_cache"):
raise InvalidArgumentError(
"cannot specify both `--live` and `--live-no-cache`"
)
kwargs.update(
{
"live_summary": not kwargs.pop("live_no_summary", False),
"live_html": not kwargs.pop("live_no_html", False),
}
)
return kwargs
+11 -3
View File
@@ -13,14 +13,22 @@ class TestAPI:
assert api.get_url("foo") == expected_url
def test_open(self, tmp_dir, dvc, remote):
tmp_dir.dvc_gen("foo", "foo-text")
tmp_dir.dvc_gen(
{
"foo": "foo-text",
"dir": {"bar": "bar-text"},
}
)
dvc.push()
# Remove cache to force download
remove(dvc.odb.local.path)
with api.open("foo") as fd:
assert fd.read() == "foo-text"
with api.open("foo") as fobj:
assert fobj.read() == "foo-text"
with api.open("dir/bar") as fobj:
assert fobj.read() == "bar-text"
@pytest.mark.parametrize(
"clear_cache", [True, False], ids=["cache", "no_cache"]
+3 -1
View File
@@ -270,7 +270,9 @@ class Console:
path = Path(file).resolve()
url = (
relpath(path) if "Microsoft" in uname().release else path.as_uri()
relpath(path)
if "microsoft" in uname().release.lower()
else path.as_uri()
)
opened = webbrowser.open(url)
+43 -10
View File
@@ -1,15 +1,24 @@
import sys
from pathlib import Path
from typing import TYPE_CHECKING, List
from hydra import compose, initialize_config_dir
from hydra._internal.config_loader_impl import ConfigLoaderImpl
from hydra._internal.core_plugins.basic_sweeper import BasicSweeper
from hydra.core.override_parser.overrides_parser import OverridesParser
from hydra.core.override_parser.types import ValueType
from hydra.errors import ConfigCompositionException, OverrideParseException
from omegaconf import OmegaConf
try:
from hydra import compose, initialize_config_dir
from hydra._internal.config_loader_impl import ConfigLoaderImpl
from hydra._internal.core_plugins.basic_sweeper import BasicSweeper
from hydra.core.override_parser.overrides_parser import OverridesParser
from hydra.core.override_parser.types import ValueType
from hydra.errors import ConfigCompositionException, OverrideParseException
from omegaconf import OmegaConf
from dvc.exceptions import InvalidArgumentError
hydra_compatible = True
except ValueError:
if sys.version_info >= (3, 11):
hydra_compatible = False
else:
raise
from dvc.exceptions import DvcException, InvalidArgumentError
from .collections import merge_dicts, remove_missing_keys, to_omegaconf
from .serialize import DUMPERS, MODIFIERS
@@ -37,11 +46,20 @@ def compose_and_dump(
.. _Hydra Override:
https://hydra.cc/docs/advanced/override_grammar/basic/
"""
if not hydra_compatible:
raise DvcException(
"hydra functionality is not supported in Python >= 3.11"
)
with initialize_config_dir(config_dir, version_base=None):
cfg = compose(config_name=config_name, overrides=overrides)
dumper = DUMPERS[Path(output_file).suffix.lower()]
dumper(output_file, OmegaConf.to_object(cfg))
suffix = Path(output_file).suffix.lower()
if suffix not in [".yml", ".yaml"]:
dumper = DUMPERS[suffix]
dumper(output_file, OmegaConf.to_object(cfg))
else:
Path(output_file).write_text(OmegaConf.to_yaml(cfg), encoding="utf-8")
def apply_overrides(path: "StrPath", overrides: List[str]) -> None:
@@ -53,6 +71,11 @@ def apply_overrides(path: "StrPath", overrides: List[str]) -> None:
.. _Hydra Override:
https://hydra.cc/docs/next/advanced/override_grammar/basic/
"""
if not hydra_compatible:
raise DvcException(
"hydra functionality is not supported in Python >= 3.11"
)
suffix = Path(path).suffix.lower()
hydra_errors = (ConfigCompositionException, OverrideParseException)
@@ -78,6 +101,11 @@ def apply_overrides(path: "StrPath", overrides: List[str]) -> None:
def to_hydra_overrides(path_overrides):
if not hydra_compatible:
raise DvcException(
"hydra functionality is not supported in Python >= 3.11"
)
parser = OverridesParser.create()
return parser.parse_overrides(overrides=path_overrides)
@@ -89,6 +117,11 @@ def dict_product(dicts):
def get_hydra_sweeps(path_overrides):
if not hydra_compatible:
raise DvcException(
"hydra functionality is not supported in Python >= 3.11"
)
path_sweeps = {}
for path, overrides in path_overrides.items():
overrides = to_hydra_overrides(overrides)
+6 -2
View File
@@ -1,2 +1,6 @@
def get_plot_id(plot_id: str, config_file_path: str = ""):
return f"{config_file_path}::{plot_id}" if config_file_path else plot_id
def get_plot_id(config_plot_id: str, config_file_path: str = ""):
return (
f"{config_file_path}::{config_plot_id}"
if config_file_path
else config_plot_id
)
+13 -11
View File
@@ -51,13 +51,13 @@ dependencies = [
"pyparsing>=2.4.7",
"typing-extensions>=3.7.4",
"scmrepo==0.1.3",
"dvc-render==0.0.12",
"dvc-task==0.1.4",
"dvclive>=0.10.0",
"dvc-data==0.25.2",
"dvc-render==0.0.14",
"dvc-task==0.1.6",
"dvclive>=1.0",
"dvc-data==0.28.0",
"dvc-http==2.27.2",
"hydra-core>=1.1.0",
"iterative-telemetry==0.0.5",
"iterative-telemetry==0.0.6",
]
dynamic = ["version"]
classifiers = [
@@ -70,12 +70,12 @@ classifiers = [
]
[project.optional-dependencies]
azure = ["dvc-azure==2.20.4"]
gdrive = ["dvc-gdrive==2.19.0"]
gs = ["dvc-gs==2.19.1"]
azure = ["dvc-azure==2.20.5"]
gdrive = ["dvc-gdrive==2.19.1"]
gs = ["dvc-gs==2.20.0"]
hdfs = ["dvc-hdfs==2.19.0; python_version < '3.11'"]
oss = ["dvc-oss==2.19.0"]
s3 = ["dvc-s3==2.20.1"]
s3 = ["dvc-s3==2.21.0"]
ssh = ["dvc-ssh==2.20.0"]
ssh_gssapi = ["dvc-ssh[gssapi]==2.20.0"]
webdav = ["dvc-webdav==2.19.0"]
@@ -99,8 +99,8 @@ tests = [
"pytest-timeout==2.1.0",
"filelock==3.8.0",
# optional dependencies
"dvclive>=1.0",
"pywin32>=225; sys_platform == 'win32'",
"dvclive[image]>=0.7.3",
"beautifulsoup4==4.11.1",
# pylint requirements
"pylint==2.15.5",
@@ -110,7 +110,7 @@ tests = [
# and, protected method calls in our tests
"pylint-plugin-utils==0.7",
# type-checking
"mypy==0.982",
"mypy==0.990",
"types-requests>=2.27.15",
"types-tabulate>=0.8.6",
"types-toml>=0.10.4",
@@ -171,6 +171,7 @@ markers = [
]
xfail_strict = true
testpaths = ["tests"]
filterwarnings = ["error::pytest_mock.PytestMockWarning"]
[tool.coverage.run]
branch = true
@@ -200,6 +201,7 @@ show_traceback = true
pretty = true
# See https://mypy.readthedocs.io/en/latest/running_mypy.html#missing-imports.
ignore_missing_imports = true
implicit_optional = true
check_untyped_defs = false
# Warnings
warn_no_return = true
+4
View File
@@ -44,6 +44,10 @@ if args.pkg == "osxpkg":
]
)
else:
if args.pkg == "rpm":
# https://github.com/jordansissel/fpm/issues/1503
flags.extend(["--rpm-rpmbuild-define", "_build_id_links none"])
bash_dir = build / "etc" / "bash_completion.d"
dirs = ["usr", "etc"]
flags.extend(["--depends", "git >= 1.7.0"]) # needed for gitpython
@@ -3,4 +3,3 @@ from PyInstaller.utils.hooks import ( # pylint:disable=import-error
)
datas = copy_metadata("pydrive2")
datas += copy_metadata("google-api-python-client")
-173
View File
@@ -1,173 +0,0 @@
import logging
import os
import tempfile
import warnings
from unittest import TestCase
import pytest
import shortuuid
from dvc.repo import Repo as DvcRepo
from dvc.utils.fs import remove
logger = logging.getLogger("dvc")
class TestDirFixture:
DATA_DIR = "data_dir"
DATA_SUB_DIR = os.path.join(DATA_DIR, "data_sub_dir")
DATA = os.path.join(DATA_DIR, "data")
DATA_SUB = os.path.join(DATA_SUB_DIR, "data_sub")
DATA_CONTENTS = DATA
DATA_SUB_CONTENTS = DATA_SUB
FOO = "foo"
FOO_CONTENTS = FOO
BAR = "bar"
# NOTE: len(FOO_CONTENTS) must be != len(BAR_CONTENTS)
#
# Our state database relies on file mtime and file size to determine
# that a file has changed. Usually, mtime is enough by itself but on
# some filesystems like APFS on macOS mtime resolution is so bad,
# that our tests can overwrite a file in that time window without dvc
# being able to detect that, thus causing tests to fail. Usually,
# in tests, we replace foo with bar, so we need to make sure that when we
# modify a file in our tests, its content length changes.
BAR_CONTENTS = BAR + "r"
CODE = "code.py"
CODE_CONTENTS = (
"import sys\nimport shutil\n"
"shutil.copyfile(sys.argv[1], sys.argv[2])"
)
UNICODE = "тест"
UNICODE_CONTENTS = "проверка"
def __init__(self):
root_dir = self.mkdtemp()
self._root_dir = os.path.realpath(root_dir)
self._saved_dir = None
@property
def root_dir(self):
return self._root_dir
def _pushd(self, d):
if not self._saved_dir:
self._saved_dir = os.path.realpath(os.curdir)
os.chdir(d)
def _popd(self):
os.chdir(self._saved_dir)
self._saved_dir = None
def create(self, name, contents):
dname = os.path.dirname(name)
if len(dname) > 0 and not os.path.isdir(dname):
os.makedirs(dname)
with open(name, "a", encoding="utf-8") as f:
f.write(
contents
if isinstance(contents, str)
else contents.decode("utf-8")
)
@staticmethod
def mkdtemp(base_directory=None):
prefix = f"dvc-test.{os.getpid()}."
suffix = f".{shortuuid.uuid()}"
return tempfile.mkdtemp(
prefix=prefix, suffix=suffix, dir=base_directory
)
def setUp(self):
self._pushd(self._root_dir)
self.create(self.FOO, self.FOO_CONTENTS)
self.create(self.BAR, self.BAR_CONTENTS)
self.create(self.CODE, self.CODE_CONTENTS)
os.mkdir(self.DATA_DIR)
os.mkdir(self.DATA_SUB_DIR)
self.create(self.DATA, self.DATA_CONTENTS)
self.create(self.DATA_SUB, self.DATA_SUB_CONTENTS)
self.create(self.UNICODE, self.UNICODE_CONTENTS)
def tearDown(self):
self._popd()
try:
remove(self._root_dir)
except OSError as exc: # pragma: no cover
# pylint: disable=no-member
# We ignore this under Windows with a warning because it happened
# to be really hard to trace all not properly closed files.
#
# Best guess so far is that gitpython is the culprit:
# it opens files and uses __del__ to close them, which can happen
# late in current pythons. TestGitFixture and TestDvcFixture try
# to close that and it works on most of the tests, but not all.
# Repos and thus git repos are created all over the dvc ;)
if os.name == "nt" and exc.winerror == 32:
warnings.warn("Failed to remove test dir: " + str(exc))
else:
raise
class TestGitFixture(TestDirFixture):
N_RETRIES = 5
def setUp(self):
from scmrepo.git import Git
super().setUp()
self.git = Git.init(".")
self.git.add_commit(self.CODE, message="add code")
def tearDown(self):
self.git.close()
super().tearDown()
class TestDvcFixture(TestDirFixture):
def setUp(self):
super().setUp()
self.dvc = DvcRepo.init(self.root_dir, no_scm=True)
def tearDown(self):
self.dvc.close()
super().tearDown()
class TestDvcGitFixture(TestGitFixture):
def setUp(self):
super().setUp()
self.dvc = DvcRepo.init(self.root_dir)
self.dvc.scm.commit("init dvc")
def tearDown(self):
self.dvc.close()
super().tearDown()
# NOTE: Inheritance order in the classes below is important.
class TestDvc(TestDvcFixture, TestCase):
def __init__(self, methodName):
TestDvcFixture.__init__(self)
TestCase.__init__(self, methodName)
self._caplog = None
self._capsys = None
@pytest.fixture(autouse=True)
def inject_fixtures(self, caplog, capsys):
self._caplog = caplog
self._capsys = capsys
class TestDvcGit(TestDvcGitFixture, TestCase):
def __init__(self, methodName):
TestDvcGitFixture.__init__(self)
TestCase.__init__(self, methodName)
self._caplog = None
@pytest.fixture(autouse=True)
def inject_fixtures(self, caplog):
self._caplog = caplog
+19 -5
View File
@@ -1,3 +1,4 @@
import gc
import json
import os
import sys
@@ -9,7 +10,7 @@ from dvc.testing.fixtures import * # noqa, pylint: disable=wildcard-import
from .dir_helpers import * # noqa, pylint: disable=wildcard-import
from .remotes import * # noqa, pylint: disable=wildcard-import
from .utils.scriptify import scriptify
from .scripts import * # noqa, pylint: disable=wildcard-import
# Prevent updater and analytics from running their processes
os.environ["DVC_TEST"] = "true"
@@ -172,9 +173,6 @@ def custom_template(tmp_dir, dvc):
return template
scriptify_fixture = pytest.fixture(lambda: scriptify, name="scriptify")
@pytest.fixture(autouse=True)
def mocked_webbrowser_open(mocker):
mocker.patch("webbrowser.open")
@@ -218,7 +216,7 @@ defaultBranch=master
@pytest.fixture
def run_copy_metrics(tmp_dir, run_copy):
def run_copy_metrics(tmp_dir, copy_script):
def run(
file1,
file2,
@@ -262,3 +260,19 @@ def mock_hydra_conf(mocker):
# NOTE: using sentinel here so that any imports from `hydra.conf`
# return a mock.
sys.modules["hydra.conf"] = mocker.sentinel
@pytest.fixture(autouse=True)
def gc_collect_on_dvc_close_on_win_311(mocker):
if sys.version_info < (3, 11) and os.name != "nt":
return
from dvc.repo import Repo
close = Repo.close
def wrapped(repo):
close(repo)
gc.collect()
mocker.patch("dvc.repo.Repo.close", wrapped)
+2 -29
View File
@@ -47,7 +47,6 @@ from global repo template to creating everything inplace, which:
import os
import pathlib
from textwrap import dedent
import pytest
@@ -67,17 +66,7 @@ disable_other_loggers()
@pytest.fixture
def run_copy(tmp_dir, dvc):
tmp_dir.gen(
"copy.py",
(
"import sys, shutil, os\n"
"shutil.copyfile(sys.argv[1], sys.argv[2]) "
"if os.path.isfile(sys.argv[1]) "
"else shutil.copytree(sys.argv[1], sys.argv[2])"
),
)
def run_copy(tmp_dir, copy_script, dvc):
def run_copy(src, dst, **run_kwargs):
wdir = pathlib.Path(run_kwargs.get("wdir", "."))
wdir = pathlib.Path("../" * len(wdir.parts))
@@ -94,23 +83,7 @@ def run_copy(tmp_dir, dvc):
@pytest.fixture
def run_head(tmp_dir, dvc):
"""Output first line of each file to different file with '-1' appended.
Useful for tracking multiple outputs/dependencies which are not a copy
of each others.
"""
tmp_dir.gen(
{
"head.py": dedent(
"""
import sys
for file in sys.argv[1:]:
with open(file) as f, open(file +"-1","w+") as w:
w.write(f.readline())
"""
)
}
)
def run_head(tmp_dir, head_script, dvc):
script = os.path.abspath(tmp_dir / "head.py")
def run(*args, **run_kwargs):
+39 -9
View File
@@ -13,7 +13,7 @@ from dvc.repo.experiments.utils import exp_refs_by_rev
from dvc.scm import resolve_rev
from dvc.stage.exceptions import StageFileDoesNotExistError
from dvc.utils.serialize import PythonFileCorruptedError
from tests.func.test_repro_multistage import COPY_SCRIPT
from tests.scripts import COPY_SCRIPT
@pytest.mark.parametrize("name", [None, "foo"])
@@ -209,8 +209,7 @@ def test_get_baseline(tmp_dir, scm, dvc, exp_stage):
assert dvc.experiments.get_baseline(f"{CELERY_STASH}@{{1}}") == init_rev
def test_update_py_params(tmp_dir, scm, dvc, test_queue):
tmp_dir.gen("copy.py", COPY_SCRIPT)
def test_update_py_params(tmp_dir, scm, dvc, test_queue, copy_script):
tmp_dir.gen("params.py", "INT = 1\n")
stage = dvc.run(
cmd="python copy.py params.py metrics.py",
@@ -371,8 +370,7 @@ def test_no_scm(tmp_dir):
getattr(dvc.experiments, cmd)()
def test_untracked(tmp_dir, scm, dvc, caplog, workspace):
tmp_dir.gen("copy.py", COPY_SCRIPT)
def test_untracked(tmp_dir, scm, dvc, caplog, workspace, copy_script):
tmp_dir.scm_gen("params.yaml", "foo: 1", commit="track params")
stage = dvc.run(
cmd="python copy.py params.yaml metrics.yaml",
@@ -419,7 +417,7 @@ def test_packed_args_exists(tmp_dir, scm, dvc, exp_stage, caplog):
assert "Temporary DVC file" in caplog.text
def test_list(tmp_dir, scm, dvc, exp_stage):
def _prepare_experiments(tmp_dir, scm, dvc, exp_stage):
baseline_a = scm.get_rev()
results = dvc.experiments.run(exp_stage.addressing, params=["foo=2"])
exp_a = first(results)
@@ -435,6 +433,18 @@ def test_list(tmp_dir, scm, dvc, exp_stage):
exp_c = first(results)
ref_info_c = first(exp_refs_by_rev(scm, exp_c))
return baseline_a, baseline_c, ref_info_a, ref_info_b, ref_info_c
def test_list(tmp_dir, scm, dvc, exp_stage):
(
baseline_a,
baseline_c,
ref_info_a,
ref_info_b,
ref_info_c,
) = _prepare_experiments(tmp_dir, scm, dvc, exp_stage)
assert dvc.experiments.ls() == {baseline_c: [ref_info_c.name]}
exp_list = dvc.experiments.ls(rev=ref_info_a.baseline_sha)
@@ -449,6 +459,25 @@ def test_list(tmp_dir, scm, dvc, exp_stage):
}
def test_list_cli(tmp_dir, scm, dvc, capsys, exp_stage):
from dvc.cli import main
baseline_a, _, ref_info_a, ref_info_b, ref_info_c = _prepare_experiments(
tmp_dir, scm, dvc, exp_stage
)
# Make sure that we prioritize the current branch name
scm.checkout("branch", True)
capsys.readouterr()
assert main(["exp", "list", "-A"]) == 0
cap = capsys.readouterr()
assert set(cap.out.split()) == set(
["branch:", baseline_a[:7] + ":"]
+ [ref_info_a.name, ref_info_b.name, ref_info_c.name]
)
def test_subdir(tmp_dir, scm, dvc, workspace):
subdir = tmp_dir / "dir"
subdir.gen("copy.py", COPY_SCRIPT)
@@ -538,7 +567,7 @@ def test_run_celery(tmp_dir, scm, dvc, exp_stage, mocker):
repro_spy = mocker.spy(dvc.experiments, "reproduce_celery")
results = dvc.experiments.run(run_all=True)
assert len(results) == 2
repro_spy.assert_called_once_with(entries=mocker.ANY, jobs=1)
repro_spy.assert_called_once_with(jobs=1)
expected = {"foo: 2", "foo: 3"}
metrics = set()
@@ -600,9 +629,10 @@ def test_fix_exp_head(tmp_dir, scm, tail):
"params, target",
itertools.product(("foo: 1", "foo: 2"), (True, False)),
)
def test_modified_data_dep(tmp_dir, scm, dvc, workspace, params, target):
def test_modified_data_dep(
tmp_dir, scm, dvc, workspace, params, target, copy_script
):
tmp_dir.dvc_gen("data", "data")
tmp_dir.gen("copy.py", COPY_SCRIPT)
tmp_dir.gen("params.yaml", "foo: 1")
exp_stage = dvc.run(
cmd="python copy.py params.yaml metrics.yaml",
+4 -10
View File
@@ -1,12 +1,9 @@
import pytest
from funcy import first
from tests.func.test_repro_multistage import COPY_SCRIPT
@pytest.mark.parametrize("queued, expected", [(True, 0), (False, 1)])
def test_workspace(tmp_dir, scm, dvc, queued, expected):
tmp_dir.gen("copy.py", COPY_SCRIPT)
def test_workspace(tmp_dir, scm, dvc, queued, expected, copy_script):
tmp_dir.gen("params.yaml", "foo: 1")
stage = dvc.run(
@@ -26,8 +23,7 @@ def test_workspace(tmp_dir, scm, dvc, queued, expected):
@pytest.mark.parametrize("queued, expected", [(True, 0), (False, 2)])
def test_all_commits(tmp_dir, scm, dvc, queued, expected):
tmp_dir.gen("copy.py", COPY_SCRIPT)
def test_all_commits(tmp_dir, scm, dvc, queued, expected, copy_script):
tmp_dir.gen("params.yaml", "foo: 1")
stage = dvc.run(
@@ -55,8 +51,7 @@ def test_all_commits(tmp_dir, scm, dvc, queued, expected):
@pytest.mark.parametrize("queued, expected", [(True, 2), (False, 3)])
def test_all_branches(tmp_dir, scm, dvc, queued, expected):
tmp_dir.gen("copy.py", COPY_SCRIPT)
def test_all_branches(tmp_dir, scm, dvc, queued, expected, copy_script):
tmp_dir.gen("params.yaml", "foo: 1")
stage = dvc.run(
@@ -91,8 +86,7 @@ def test_all_branches(tmp_dir, scm, dvc, queued, expected):
@pytest.mark.parametrize("queued, expected", [(True, 2), (False, 3)])
def test_all_tags(tmp_dir, scm, dvc, queued, expected):
tmp_dir.gen("copy.py", COPY_SCRIPT)
def test_all_tags(tmp_dir, scm, dvc, queued, expected, copy_script):
tmp_dir.gen("params.yaml", "foo: 1")
stage = dvc.run(
+8 -6
View File
@@ -345,11 +345,13 @@ def test_init_interactive_live(
"train": {
"cmd": "python script.py",
"deps": ["data", "script.py"],
"metrics": [{"dvclive.json": {"cache": False}}],
"metrics": [
{os.path.join("dvclive", "metrics.json"): {"cache": False}}
],
"outs": ["models"],
"params": [{"params.yaml": None}],
"plots": [
{os.path.join("dvclive", "scalars"): {"cache": False}}
{os.path.join("dvclive", "plots"): {"cache": False}}
],
}
}
@@ -434,12 +436,12 @@ def test_init_with_type_default_and_live_provided(
"cmd": "cmd",
"deps": ["data", "src"],
"metrics": [
{"live.json": {"cache": False}},
{os.path.join("live", "metrics.json"): {"cache": False}},
],
"outs": ["models"],
"params": [{"params.yaml": None}],
"plots": [
{os.path.join("live", "scalars"): {"cache": False}},
{os.path.join("live", "plots"): {"cache": False}},
],
}
}
@@ -477,13 +479,13 @@ def test_init_with_live_and_metrics_plots_provided(
"cmd": "cmd",
"deps": ["data", "src"],
"metrics": [
{"live.json": {"cache": False}},
{os.path.join("live", "metrics.json"): {"cache": False}},
{"metrics.json": {"cache": False}},
],
"outs": ["models"],
"params": [{"params.yaml": None}],
"plots": [
{os.path.join("live", "scalars"): {"cache": False}},
{os.path.join("live", "plots"): {"cache": False}},
{"plots": {"cache": False}},
],
}
+40 -56
View File
@@ -11,64 +11,54 @@ def to_dict(tasks):
return status_dict
@pytest.fixture
def success_tasks(tmp_dir, dvc, scm, test_queue, exp_stage):
queue_length = 3
name_list = []
for i in range(queue_length):
name = f"success{i}"
name_list.append(name)
dvc.experiments.run(
exp_stage.addressing, params=[f"foo={i}"], queue=True, name=name
)
dvc.experiments.run(run_all=True)
return name_list
@pytest.fixture
def failed_tasks(tmp_dir, dvc, scm, test_queue, failed_exp_stage):
queue_length = 3
name_list = []
for i in range(queue_length):
name = f"failed{i}"
name_list.append(name)
dvc.experiments.run(
failed_exp_stage.addressing,
params=[f"foo={i+queue_length}"],
queue=True,
name=name,
)
dvc.experiments.run(run_all=True)
return name_list
@pytest.mark.xfail(strict=False, reason="pytest-celery flaky")
@pytest.mark.parametrize("follow", [True, False])
def test_celery_logs(
tmp_dir,
scm,
dvc,
failed_exp_stage,
test_queue,
follow,
capsys,
):
celery_queue = dvc.experiments.celery_queue
dvc.experiments.run(failed_exp_stage.addressing, queue=True)
dvc.experiments.run(run_all=True)
queue = dvc.experiments.celery_queue
done_result = first(queue.iter_done())
done_result = first(celery_queue.iter_done())
name = done_result.entry.stash_rev
captured = capsys.readouterr()
queue.logs(name, follow=follow)
celery_queue.logs(name, follow=follow)
captured = capsys.readouterr()
assert "failed to reproduce 'failed-copy-file'" in captured.out
@pytest.mark.xfail(strict=False, reason="pytest-celery flaky")
def test_queue_remove_done(dvc, failed_tasks, success_tasks):
assert len(dvc.experiments.celery_queue.failed_stash) == 3
status = to_dict(dvc.experiments.celery_queue.status())
def test_queue_remove_done(
dvc,
exp_stage,
failed_exp_stage,
):
queue_length = 3
success_tasks = []
failed_tasks = []
celery_queue = dvc.experiments.celery_queue
for i in range(queue_length):
name = f"success{i}"
success_tasks.append(name)
dvc.experiments.run(
exp_stage.addressing, params=[f"foo={i}"], queue=True, name=name
)
name_fail = f"failed{i}"
failed_tasks.append(name_fail)
dvc.experiments.run(
failed_exp_stage.addressing,
params=[f"foo={i+queue_length}"],
queue=True,
name=name_fail,
)
dvc.experiments.run(run_all=True)
assert len(celery_queue.failed_stash) == 3
status = to_dict(celery_queue.status())
assert len(status) == 6
for name in failed_tasks:
assert status[name] == "Failed"
@@ -76,27 +66,21 @@ def test_queue_remove_done(dvc, failed_tasks, success_tasks):
assert status[name] == "Success"
with pytest.raises(InvalidArgumentError):
dvc.experiments.celery_queue.remove(failed_tasks[:2] + ["non-exist"])
assert len(dvc.experiments.celery_queue.status()) == 6
celery_queue.remove(failed_tasks[:2] + ["non-exist"])
assert len(celery_queue.status()) == 6
to_remove = [failed_tasks[0], success_tasks[2]]
assert set(dvc.experiments.celery_queue.remove(to_remove)) == set(
to_remove
)
assert set(celery_queue.remove(to_remove)) == set(to_remove)
assert len(dvc.experiments.celery_queue.failed_stash) == 2
status = to_dict(dvc.experiments.celery_queue.status())
assert len(celery_queue.failed_stash) == 2
status = to_dict(celery_queue.status())
assert set(status) == set(failed_tasks[1:] + success_tasks[:2])
assert dvc.experiments.celery_queue.clear(failed=True) == failed_tasks[1:]
assert set(celery_queue.clear(failed=True)) == set(failed_tasks[1:])
assert len(dvc.experiments.celery_queue.failed_stash) == 0
assert set(to_dict(dvc.experiments.celery_queue.status())) == set(
success_tasks[:2]
)
assert len(celery_queue.failed_stash) == 0
assert set(to_dict(celery_queue.status())) == set(success_tasks[:2])
assert (
dvc.experiments.celery_queue.clear(success=True) == success_tasks[:2]
)
assert set(celery_queue.clear(success=True)) == set(success_tasks[:2])
assert dvc.experiments.celery_queue.status() == []
assert celery_queue.status() == []
+19 -1
View File
@@ -110,6 +110,11 @@ def test_hydra_compose_and_dump(
["foo=bar,baz"],
[{"params.yaml": ["foo=bar"]}, {"params.yaml": ["foo=baz"]}],
),
(
False,
[],
[{}],
),
],
)
def test_hydra_sweep(
@@ -139,5 +144,18 @@ def test_hydra_sweep(
def test_hydra_sweep_requires_queue(params_repo, dvc):
with pytest.raises(InvalidArgumentError):
with pytest.raises(
InvalidArgumentError,
match="Sweep overrides can't be used without `--queue`",
):
dvc.experiments.run(params=["db=mysql,postgresql"])
def test_hydra_sweep_cant_use_name(tmp_dir, params_repo, dvc):
with pytest.raises(
InvalidArgumentError,
match="Sweep overrides can't be used alongside `--name`",
):
dvc.experiments.run(
params=["db=mysql,postgresql"], queue=True, name="foo"
)
+131 -11
View File
@@ -1,10 +1,12 @@
import logging
import os
import random
from datetime import datetime
from unittest.mock import ANY
import pytest
from funcy import first, get_in
from scmrepo.exceptions import SCMError
from dvc.cli import main
from dvc.repo.experiments.executor.base import (
@@ -20,7 +22,6 @@ from dvc.repo.experiments.utils import exp_refs_by_rev
from dvc.utils import relpath
from dvc.utils.fs import makedirs
from dvc.utils.serialize import YAMLFileCorruptedError
from tests.func.test_repro_multistage import COPY_SCRIPT
LOCK_CONTENTS = {
"read": {
@@ -173,7 +174,6 @@ def test_show_queued(tmp_dir, scm, dvc, exp_stage):
@pytest.mark.vscode
@pytest.mark.xfail(strict=False, reason="pytest-celery flaky")
def test_show_failed_experiment(tmp_dir, scm, dvc, failed_exp_stage):
baseline_rev = scm.get_rev()
timestamp = datetime.fromtimestamp(
@@ -313,10 +313,10 @@ def test_show_filter(
scm,
dvc,
capsys,
copy_script,
):
capsys.readouterr()
tmp_dir.gen("copy.py", COPY_SCRIPT)
params_file = tmp_dir / "params.yaml"
params_data = {
"foo": 1,
@@ -646,6 +646,9 @@ def test_show_csv(tmp_dir, scm, dvc, exp_stage, capsys):
result1 = dvc.experiments.run(exp_stage.addressing, params=["foo=2"])
rev1 = first(result1)
ref_info1 = first(exp_refs_by_rev(scm, rev1))
# at least 1 second gap between these experiments to make sure
# the previous experiment to be regarded as branch_base
time.sleep(1)
result2 = dvc.experiments.run(exp_stage.addressing, params=["foo=3"])
rev2 = first(result2)
@@ -679,8 +682,7 @@ def test_show_csv(tmp_dir, scm, dvc, exp_stage, capsys):
)
def test_show_only_changed(tmp_dir, dvc, scm, capsys):
tmp_dir.gen("copy.py", COPY_SCRIPT)
def test_show_only_changed(tmp_dir, dvc, scm, capsys, copy_script):
params_file = tmp_dir / "params.yaml"
params_data = {
"foo": 1,
@@ -726,13 +728,14 @@ def test_show_only_changed(tmp_dir, dvc, scm, capsys):
assert "metrics.yaml:bar" in cap.out
def test_show_parallel_coordinates(tmp_dir, dvc, scm, mocker, capsys):
def test_show_parallel_coordinates(
tmp_dir, dvc, scm, mocker, capsys, copy_script
):
from dvc.commands.experiments import show
webbroser_open = mocker.patch("webbrowser.open")
show_experiments = mocker.spy(show, "show_experiments")
tmp_dir.gen("copy.py", COPY_SCRIPT)
params_file = tmp_dir / "params.yaml"
params_data = {
"foo": 1,
@@ -807,8 +810,7 @@ def test_show_parallel_coordinates(tmp_dir, dvc, scm, mocker, capsys):
@pytest.mark.vscode
def test_show_outs(tmp_dir, dvc, scm, erepo_dir):
tmp_dir.gen("copy.py", COPY_SCRIPT)
def test_show_outs(tmp_dir, dvc, scm, erepo_dir, copy_script):
params_file = tmp_dir / "params.yaml"
params_data = {
"foo": 1,
@@ -889,8 +891,7 @@ def test_show_outs(tmp_dir, dvc, scm, erepo_dir):
}
def test_metrics_renaming(tmp_dir, dvc, scm, capsys):
tmp_dir.gen("copy.py", COPY_SCRIPT)
def test_metrics_renaming(tmp_dir, dvc, scm, capsys, copy_script):
params_file = tmp_dir / "params.yaml"
params_data = {
"foo": 1,
@@ -975,3 +976,122 @@ def test_show_sorted_deps(tmp_dir, dvc, scm, capsys):
assert main(["exp", "show", "--csv"]) == 0
cap = capsys.readouterr()
assert "a,b,c,z" in cap.out
@pytest.mark.vscode
def test_show_queued_error(tmp_dir, scm, dvc, exp_stage, mocker):
baseline_rev = scm.get_rev()
dvc.experiments.run(
exp_stage.addressing, params=["foo=2"], queue=True, name="test_name"
)
exp_rev_2 = dvc.experiments.scm.resolve_rev(f"{CELERY_STASH}@{{0}}")
commit_2 = scm.resolve_commit(exp_rev_2)
dvc.experiments.run(exp_stage.addressing, params=["foo=3"], queue=True)
exp_rev_3 = dvc.experiments.scm.resolve_rev(f"{CELERY_STASH}@{{0}}")
def resolve_commit(rev):
if rev == exp_rev_3:
raise SCMError
else:
return commit_2
mocker.patch.object(
scm,
"resolve_commit",
side_effect=mocker.MagicMock(side_effect=resolve_commit),
)
results = dvc.experiments.show()[baseline_rev]
assert len(results) == 2
exp_2 = results[exp_rev_2]["data"]
assert exp_2["status"] == "Queued"
assert exp_2["params"]["params.yaml"] == {"data": {"foo": 2}}
@pytest.mark.vscode
def test_show_completed_error(tmp_dir, scm, dvc, exp_stage, mocker):
baseline_rev = scm.get_rev()
result_2 = dvc.experiments.run(exp_stage.addressing, params=["foo=2"])
exp_rev_2 = first(result_2)
commit_2 = scm.resolve_commit(exp_rev_2)
result_3 = dvc.experiments.run(exp_stage.addressing, params=["foo=3"])
exp_rev_3 = first(result_3)
def resolve_commit(rev):
if rev == exp_rev_3:
raise SCMError
else:
return commit_2
mocker.patch.object(
scm,
"resolve_commit",
side_effect=mocker.MagicMock(side_effect=resolve_commit),
)
experiments = dvc.experiments.show()[baseline_rev]
assert len(experiments) == 2
assert exp_rev_2 in experiments
@pytest.mark.vscode
def test_show_checkpoint_error(tmp_dir, scm, dvc, checkpoint_stage, mocker):
baseline_rev = scm.get_rev()
results = dvc.experiments.run(
checkpoint_stage.addressing, params=["foo=2"]
)
exp_rev = first(results)
exp_ref = str(first(exp_refs_by_rev(scm, exp_rev)))
results = dvc.experiments.show()[baseline_rev]
assert len(results) == checkpoint_stage.iterations + 1
checkpoints = {}
for rev in results:
if rev != "baseline":
checkpoints[rev] = scm.resolve_commit(rev)
checkpoints[exp_ref] = scm.resolve_commit(exp_ref)
checkpoints[baseline_rev] = scm.resolve_commit(baseline_rev)
failed_rev = random.choice(list(checkpoints.keys()))
def resolve_commit(rev):
if rev == failed_rev:
raise SCMError
return checkpoints[rev]
mocker.patch.object(
scm,
"resolve_commit",
side_effect=mocker.MagicMock(side_effect=resolve_commit),
)
results = dvc.experiments.show()[baseline_rev]
assert len(results) == 1
@pytest.mark.vscode
def test_show_baseline_error(tmp_dir, scm, dvc, exp_stage, mocker):
baseline_rev = scm.get_rev()
branch = scm.active_branch()
result_2 = dvc.experiments.run(exp_stage.addressing, params=["foo=2"])
exp_rev_2 = first(result_2)
commit_2 = scm.resolve_commit(exp_rev_2)
def resolve_commit(rev):
if rev == baseline_rev:
raise SCMError
else:
return commit_2
mocker.patch.object(
scm,
"resolve_commit",
side_effect=mocker.MagicMock(side_effect=resolve_commit),
)
experiments = dvc.experiments.show()[baseline_rev]
assert len(experiments) == 1
assert experiments["baseline"]["data"] == {"name": branch}
assert isinstance(experiments["baseline"]["error"], SCMError)
+13 -7
View File
@@ -6,6 +6,7 @@ import pytest
from dvc.dependency import _merge_params
from dvc.parsing import DEFAULT_PARAMS_FILE, DataResolver
from dvc.parsing.context import recurse_not_a_node
from dvc.parsing.interpolate import escape_str
from . import (
CONTEXT_DATA,
@@ -272,14 +273,17 @@ def test_cmd_dict(tmp_dir, dvc, bool_config, list_config):
if list_config:
conf["parsing"]["list"] = list_config
string = "spaced string"
mixed_quote_string = "quote\"'d"
data = {
"dict": {
"foo": "foo",
"bar": 2,
"string": "spaced string",
"string": string,
"mixed_quote_string": mixed_quote_string,
"bool": True,
"bool-false": False,
"list": [1, 2, "foo"],
"list": [1, 2, "foo", mixed_quote_string],
"nested": {"foo": "foo"},
}
}
@@ -296,9 +300,10 @@ def test_cmd_dict(tmp_dir, dvc, bool_config, list_config):
bool_resolved = " --bool --no-bool-false"
if list_config is None or list_config == "nargs":
list_resolved = " --list 1 2 'foo'"
list_resolved = f" --list 1 2 foo {escape_str(mixed_quote_string)}"
else:
list_resolved = " --list 1 --list 2 --list 'foo'"
list_resolved = " --list 1 --list 2 --list foo"
list_resolved += f" --list {escape_str(mixed_quote_string)}"
assert_stage_equal(
resolver.resolve(),
@@ -306,11 +311,12 @@ def test_cmd_dict(tmp_dir, dvc, bool_config, list_config):
"stages": {
"stage1": {
"cmd": "python script.py"
" --foo 'foo' --bar 2"
" --string 'spaced string'"
" --foo foo --bar 2"
f" --string {escape_str(string)}"
f" --mixed_quote_string {escape_str(mixed_quote_string)}"
f"{bool_resolved}"
f"{list_resolved}"
" --nested.foo 'foo'"
" --nested.foo foo"
}
}
},
+23 -19
View File
@@ -257,16 +257,21 @@ def test_log_errors(
)
def test_plots_binary(tmp_dir, scm, dvc, run_copy_metrics, custom_template):
with open("image.jpg", "wb") as fd:
@pytest.mark.parametrize("ext", ["jpg", "svg"])
def test_plots_binary(
tmp_dir, scm, dvc, run_copy_metrics, custom_template, ext
):
file1 = f"image.{ext}"
file2 = f"plot.{ext}"
with open(file1, "wb") as fd:
fd.write(b"content")
dvc.add(["image.jpg"])
dvc.add([file1])
run_copy_metrics(
"image.jpg",
"plot.jpg",
file1,
file2,
commit="run training",
plots=["plot.jpg"],
plots=[file2],
name="s2",
single_stage=False,
)
@@ -276,12 +281,12 @@ def test_plots_binary(tmp_dir, scm, dvc, run_copy_metrics, custom_template):
scm.tag("v1")
with open("plot.jpg", "wb") as fd:
with open(file2, "wb") as fd:
fd.write(b"content2")
result = dvc.plots.show(revs=["v1", "workspace"])
assert get_plot(result, "v1", file="plot.jpg") == b"content"
assert get_plot(result, "workspace", file="plot.jpg") == b"content2"
assert get_plot(result, "v1", file=file2) == b"content"
assert get_plot(result, "workspace", file=file2) == b"content2"
def test_collect_non_existing_dir(tmp_dir, dvc, run_copy_metrics):
@@ -331,16 +336,15 @@ def test_collect_non_existing_dir(tmp_dir, dvc, run_copy_metrics):
@pytest.mark.parametrize(
"plot_config,expected_datafiles",
[
# TODO - enable providing data files for x
# (
# {
# "comparison": {
# "x": {"data1.json": "a"},
# "y": {"sub/dir/data2.json": "b"},
# }
# },
# ["data1.json", os.path.join("sub", "dir", "data2.json")],
# ),
(
{
"comparison": {
"x": {"data1.json": "a"},
"y": {"sub/dir/data2.json": "b"},
}
},
["data1.json", os.path.join("sub", "dir", "data2.json")],
),
(
{"data1.json": {"x": "c", "y": "a", "title": "File as key test"}},
["data1.json"],
+145 -194
View File
@@ -4,8 +4,7 @@ import os
import shutil
import stat
import textwrap
import time
from unittest.mock import call, patch
from unittest.mock import call
import colorama
import pytest
@@ -35,12 +34,11 @@ from dvc.stage.exceptions import (
StagePathNotFoundError,
)
from dvc.testing.workspace_tests import TestAdd
from dvc.utils import LARGE_DIR_SIZE, relpath
from dvc.utils import LARGE_DIR_SIZE
from dvc.utils.fs import path_isin
from dvc.utils.serialize import YAMLFileCorruptedError, load_yaml
from dvc.utils.serialize import YAMLFileCorruptedError
from dvc_data.hashfile.hash import file_md5
from dvc_data.hashfile.hash_info import HashInfo
from tests.basic_env import TestDvc
from tests.utils import get_gitignore_content
@@ -120,49 +118,38 @@ def test_add_directory(tmp_dir, dvc):
assert "\\" not in part
class TestAddDirectoryRecursive(TestDvc):
def test(self):
stages = self.dvc.add(self.DATA_DIR, recursive=True)
self.assertEqual(len(stages), 2)
def test_add_directory_recursive(tmp_dir, dvc):
tmp_dir.gen("data", {"file1": "file1", "sub": {"file2": "file2"}})
stages = dvc.add("data", recursive=True)
assert len(stages) == 2
class TestAddCmdDirectoryRecursive(TestDvc):
def test(self):
ret = main(["add", "--recursive", self.DATA_DIR])
self.assertEqual(ret, 0)
def test_warn_about_large_directories(self):
warning = (
"You are adding a large directory 'large-dir' recursively."
"\nConsider tracking it as a whole instead with "
"`{cyan}dvc add large-dir{nc}`"
).format(
cyan=colorama.Fore.CYAN,
nc=colorama.Style.RESET_ALL,
)
os.mkdir("large-dir")
# Create a lot of files
for iteration in range(LARGE_DIR_SIZE + 1):
path = os.path.join("large-dir", str(iteration))
with open(path, "w", encoding="utf-8") as fobj:
fobj.write(path)
assert main(["add", "--recursive", "large-dir"]) == 0
assert warning in self._capsys.readouterr()[1]
def test_add_cmd_directory_recursive(tmp_dir, dvc):
tmp_dir.gen("data", {"file1": "file1", "sub": {"file2": "file2"}})
assert main(["add", "--recursive", "data"]) == 0
class TestAddDirectoryWithForwardSlash(TestDvc):
def test(self):
dname = "directory/"
os.mkdir(dname)
self.create(os.path.join(dname, "file"), "file")
stages = self.dvc.add(dname)
self.assertEqual(len(stages), 1)
stage = stages[0]
self.assertTrue(stage is not None)
self.assertEqual(os.path.abspath("directory.dvc"), stage.path)
def test_warn_about_large_directories_recursive_add(tmp_dir, dvc, capsys):
warning = (
"You are adding a large directory 'large-dir' recursively."
"\nConsider tracking it as a whole instead with "
"`{cyan}dvc add large-dir{nc}`"
).format(
cyan=colorama.Fore.CYAN,
nc=colorama.Style.RESET_ALL,
)
tmp_dir.gen(
"large-dir", {f"{i}": f"{i}" for i in range(LARGE_DIR_SIZE + 1)}
)
assert main(["add", "--recursive", "large-dir"]) == 0
assert warning in capsys.readouterr()[1]
def test_add_directory_with_forward_slash(tmp_dir, dvc):
tmp_dir.gen("directory", {"file": "file"})
(stage,) = dvc.add("directory/")
assert stage.relpath == "directory.dvc"
def test_add_tracked_file(tmp_dir, scm, dvc):
@@ -178,33 +165,23 @@ def test_add_tracked_file(tmp_dir, scm, dvc):
dvc.add(path)
class TestAddDirWithExistingCache(TestDvc):
def test(self):
dname = "a"
fname = os.path.join(dname, "b")
os.mkdir(dname)
shutil.copyfile(self.FOO, fname)
def test_add_dir_with_existing_cache(tmp_dir, dvc):
tmp_dir.gen({"foo": "foo", "dir": {"file": "foo"}})
stages = self.dvc.add(self.FOO)
self.assertEqual(len(stages), 1)
self.assertTrue(stages[0] is not None)
stages = self.dvc.add(dname)
self.assertEqual(len(stages), 1)
self.assertTrue(stages[0] is not None)
(stage,) = dvc.add("foo")
assert stage is not None
(stage,) = dvc.add("dir")
assert stage is not None
class TestAddModifiedDir(TestDvc):
def test(self):
stages = self.dvc.add(self.DATA_DIR)
self.assertEqual(len(stages), 1)
self.assertTrue(stages[0] is not None)
os.unlink(self.DATA)
def test_add_modified_dir(tmp_dir, dvc):
tmp_dir.gen("data", {"foo": "foo", "sub": {"bar": "bar"}})
(stage,) = dvc.add("data")
assert stage is not None
time.sleep(2)
stages = self.dvc.add(self.DATA_DIR)
self.assertEqual(len(stages), 1)
self.assertTrue(stages[0] is not None)
(tmp_dir / "data" / "foo").unlink()
(stage,) = dvc.add("data")
assert stage is not None
def test_add_file_in_dir(tmp_dir, dvc):
@@ -326,57 +303,47 @@ def test_add_external_relpath(tmp_dir, dvc, local_cloud):
assert dvc.status() == {}
class TestAddLocalRemoteFile(TestDvc):
def test(self):
"""
Making sure that 'remote' syntax is handled properly for local outs.
"""
cwd = os.getcwd()
remote = "myremote"
def test_add_local_remote_file(tmp_dir, dvc):
"""
Making sure that 'remote' syntax is handled properly for local outs.
"""
tmp_dir.gen({"foo": "foo", "bar": "bar"})
tmp_dir.add_remote(url=tmp_dir.fs_path, name="myremote")
ret = main(["remote", "add", remote, cwd])
self.assertEqual(ret, 0)
assert main(["add", "remote://myremote/foo"]) == 0
d = (tmp_dir / "foo.dvc").load_yaml()
assert d["outs"][0]["path"] == "remote://myremote/foo"
self.dvc.config.load()
foo = f"remote://{remote}/{self.FOO}"
ret = main(["add", foo])
self.assertEqual(ret, 0)
d = load_yaml("foo.dvc")
self.assertEqual(d["outs"][0]["path"], foo)
bar = os.path.join(cwd, self.BAR)
ret = main(["add", bar])
self.assertEqual(ret, 0)
d = load_yaml("bar.dvc")
self.assertEqual(d["outs"][0]["path"], self.BAR)
assert main(["add", (tmp_dir / "bar").fs_path]) == 0
d = (tmp_dir / "bar.dvc").load_yaml()
assert d["outs"][0]["path"] == "bar"
class TestCmdAdd(TestDvc):
def test(self):
ret = main(["add", self.FOO])
self.assertEqual(ret, 0)
def test_cmd_add(tmp_dir, dvc):
tmp_dir.gen("foo", "foo")
ret = main(["add", "foo"])
assert ret == 0
ret = main(["add", "non-existing-file"])
self.assertNotEqual(ret, 0)
ret = main(["add", "non-existing-file"])
assert ret != 0
class TestDoubleAddUnchanged(TestDvc):
def test_file(self):
ret = main(["add", self.FOO])
self.assertEqual(ret, 0)
def test_double_add_unchanged_file(tmp_dir, dvc):
tmp_dir.gen("foo", "foo")
ret = main(["add", "foo"])
assert ret == 0
ret = main(["add", self.FOO])
self.assertEqual(ret, 0)
ret = main(["add", "foo"])
assert ret == 0
def test_dir(self):
ret = main(["add", self.DATA_DIR])
self.assertEqual(ret, 0)
ret = main(["add", self.DATA_DIR])
self.assertEqual(ret, 0)
def test_double_add_unchanged_dir(tmp_dir, dvc):
tmp_dir.gen("data", {"foo": "foo"})
ret = main(["add", "data"])
assert ret == 0
ret = main(["add", "data"])
assert ret == 0
def test_should_update_state_entry_for_file_after_add(mocker, dvc, tmp_dir):
@@ -443,19 +410,17 @@ def test_should_update_state_entry_for_directory_after_add(
assert file_md5_counter.mock.call_count == 10
class TestAddCommit(TestDvc):
def test(self):
ret = main(["add", self.FOO, "--no-commit"])
self.assertEqual(ret, 0)
self.assertTrue(os.path.isfile(self.FOO))
self.assertFalse(os.path.exists(self.dvc.odb.local.path))
def test_add_commit(tmp_dir, dvc):
tmp_dir.gen("foo", "foo")
ret = main(["add", "foo", "--no-commit"])
assert ret == 0
assert os.path.isfile("foo")
assert not os.path.exists(dvc.odb.local.path)
ret = main(["commit", self.FOO + ".dvc"])
self.assertEqual(ret, 0)
self.assertTrue(os.path.isfile(self.FOO))
self.assertTrue(
self.dvc.odb.local.exists("acbd18db4cc2f85cedef654fccc4a4d8")
)
ret = main(["commit", "foo" + ".dvc"])
assert ret == 0
assert os.path.isfile("foo")
assert dvc.odb.local.exists("acbd18db4cc2f85cedef654fccc4a4d8")
def test_should_collect_dir_cache_only_once(mocker, tmp_dir, dvc):
@@ -474,80 +439,66 @@ def test_should_collect_dir_cache_only_once(mocker, tmp_dir, dvc):
assert counter.mock.call_count == 5
class TestShouldPlaceStageInDataDirIfRepositoryBelowSymlink(TestDvc):
def test(self):
def is_symlink_true_below_dvc_root(path):
if path == os.path.dirname(self.dvc.root_dir):
return True
return False
def test_should_place_stage_in_data_dir_if_repository_below_symlink(
mocker, tmp_dir, dvc
):
def is_symlink_true_below_dvc_root(path):
return path == os.path.dirname(dvc.root_dir)
with patch.object(
system, "is_symlink", side_effect=is_symlink_true_below_dvc_root
):
tmp_dir.gen({"data": {"foo": "foo"}})
mocker.patch.object(
system, "is_symlink", side_effect=is_symlink_true_below_dvc_root
)
ret = main(["add", os.path.join("data", "foo")])
assert ret == 0
ret = main(["add", self.DATA])
self.assertEqual(0, ret)
stage_file_path_on_data_below_symlink = (
os.path.basename(self.DATA) + DVC_FILE_SUFFIX
)
self.assertFalse(
os.path.exists(stage_file_path_on_data_below_symlink)
)
stage_file_path = self.DATA + DVC_FILE_SUFFIX
self.assertTrue(os.path.exists(stage_file_path))
assert not (tmp_dir / "foo.dvc").exists()
assert (tmp_dir / "data" / "foo.dvc").exists()
class TestShouldThrowProperExceptionOnCorruptedStageFile(TestDvc):
def test(self):
ret = main(["add", self.FOO])
assert 0 == ret
def test_should_throw_proper_exception_on_corrupted_stage_file(
caplog, tmp_dir, dvc
):
tmp_dir.gen({"foo": "foo", "bar": " bar"})
assert main(["add", "foo"]) == 0
foo_stage = relpath(self.FOO + DVC_FILE_SUFFIX)
with (tmp_dir / "foo.dvc").open("a+") as f:
f.write("this will break yaml file structure")
# corrupt stage file
with open(foo_stage, "a+", encoding="utf-8") as file:
file.write("this will break yaml file structure")
self._caplog.clear()
ret = main(["add", self.BAR])
assert 1 == ret
expected_error = (
f"unable to read: '{foo_stage}', YAML file structure is corrupted"
)
assert expected_error in self._caplog.text
caplog.clear()
assert main(["add", "bar"]) == 1
expected_error = (
"unable to read: 'foo.dvc', YAML file structure is corrupted"
)
assert expected_error in caplog.text
class TestAddFilename(TestDvc):
def test(self):
ret = main(["add", self.FOO, self.BAR, "--file", "error.dvc"])
self.assertNotEqual(0, ret)
def test_add_filename(tmp_dir, dvc):
tmp_dir.gen({"foo": "foo", "bar": "bar", "data": {"file": "file"}})
ret = main(["add", "foo", "bar", "--file", "error.dvc"])
assert ret != 0
ret = main(["add", "-R", self.DATA_DIR, "--file", "error.dvc"])
self.assertNotEqual(0, ret)
ret = main(["add", "-R", "data", "--file", "error.dvc"])
assert ret != 0
with self.assertRaises(RecursiveAddingWhileUsingFilename):
self.dvc.add(self.DATA_DIR, recursive=True, fname="error.dvc")
with pytest.raises(RecursiveAddingWhileUsingFilename):
dvc.add("data", recursive=True, fname="error.dvc")
ret = main(["add", self.DATA_DIR, "--file", "data_directory.dvc"])
self.assertEqual(0, ret)
self.assertTrue(os.path.exists("data_directory.dvc"))
ret = main(["add", "data", "--file", "data_directory.dvc"])
assert ret == 0
assert (tmp_dir / "data_directory.dvc").exists()
ret = main(["add", self.FOO, "--file", "bar.dvc"])
self.assertEqual(0, ret)
self.assertTrue(os.path.exists("bar.dvc"))
self.assertFalse(os.path.exists("foo.dvc"))
ret = main(["add", "foo", "--file", "bar.dvc"])
assert ret == 0
assert (tmp_dir / "bar.dvc").exists()
assert not (tmp_dir / "foo.dvc").exists()
os.remove("bar.dvc")
(tmp_dir / "bar.dvc").unlink()
ret = main(["add", self.FOO, "--file", "bar.dvc"])
self.assertEqual(0, ret)
self.assertTrue(os.path.exists("bar.dvc"))
self.assertFalse(os.path.exists("foo.dvc"))
ret = main(["add", "foo", "--file", "bar.dvc"])
assert ret == 0
assert (tmp_dir / "bar.dvc").exists()
assert not (tmp_dir / "foo.dvc").exists()
def test_failed_add_cleanup(tmp_dir, scm, dvc):
@@ -577,25 +528,25 @@ def test_should_not_track_git_internal_files(mocker, dvc, tmp_dir):
assert ".git" not in fname
class TestAddUnprotected(TestDvc):
def test(self):
ret = main(["config", "cache.type", "hardlink"])
self.assertEqual(ret, 0)
def test_add_unprotected(tmp_dir, dvc):
tmp_dir.gen("foo", "foo")
ret = main(["config", "cache.type", "hardlink"])
assert ret == 0
ret = main(["add", self.FOO])
self.assertEqual(ret, 0)
ret = main(["add", "foo"])
assert ret == 0
self.assertFalse(os.access(self.FOO, os.W_OK))
self.assertTrue(system.is_hardlink(self.FOO))
assert not os.access("foo", os.W_OK)
assert system.is_hardlink("foo")
ret = main(["unprotect", self.FOO])
self.assertEqual(ret, 0)
ret = main(["unprotect", "foo"])
assert ret == 0
ret = main(["add", self.FOO])
self.assertEqual(ret, 0)
ret = main(["add", "foo"])
assert ret == 0
self.assertFalse(os.access(self.FOO, os.W_OK))
self.assertTrue(system.is_hardlink(self.FOO))
assert not os.access("foo", os.W_OK)
assert system.is_hardlink("foo")
@pytest.fixture
+2 -2
View File
@@ -12,7 +12,7 @@ from tests.utils import ANY
def test_daemon_analytics(mocker, tmp_path):
mock_send = mocker.patch("dvc.analytics.send")
report = os.fspath(tmp_path)
assert 0 == main(["daemon", "analytics", report])
assert main(["daemon", "analytics", report]) == 0
mock_send.assert_called_with(report)
@@ -21,7 +21,7 @@ def test_main_analytics(mocker, tmp_dir, dvc):
mock_is_enabled = mocker.patch("dvc.analytics.collect_and_send_report")
mock_report = mocker.patch("dvc.analytics.is_enabled", return_value=True)
tmp_dir.gen("foo", "text")
assert 0 == main(["add", "foo"])
assert main(["add", "foo"]) == 0
assert mock_is_enabled.called
assert mock_report.called
+305 -409
View File
@@ -1,16 +1,13 @@
import collections
import filecmp
import logging
import os
import shutil
import stat
import textwrap
from unittest.mock import patch
import pytest
from dvc.cli import main
from dvc.dvcfile import DVC_FILE_SUFFIX, PIPELINE_FILE, Dvcfile
from dvc.dvcfile import PIPELINE_FILE, Dvcfile
from dvc.exceptions import (
CheckoutError,
CheckoutErrorSuggestGit,
@@ -24,8 +21,7 @@ from dvc.stage.exceptions import StageFileDoesNotExistError
from dvc.utils import relpath
from dvc.utils.fs import remove
from dvc.utils.serialize import dump_yaml, load_yaml
from tests.basic_env import TestDvc, TestDvcGit
from tests.func.test_repro import TestRepro
from tests.utils import get_gitignore_content
logger = logging.getLogger("dvc")
@@ -36,465 +32,365 @@ def walk_files(directory):
yield os.path.join(root, f)
class TestCheckout(TestRepro):
def setUp(self):
super().setUp()
def test_checkout(tmp_dir, dvc, copy_script):
tmp_dir.dvc_gen({"foo": "foo", "data": {"file": "file"}})
dvc.run(
fname="file1.dvc",
outs=["file1"],
deps=["foo", "copy.py"],
cmd="python copy.py foo file1",
single_stage=True,
)
remove(tmp_dir / "foo")
remove("data")
stages = self.dvc.add(self.DATA_DIR)
self.assertEqual(len(stages), 1)
self.data_dir_stage = stages[0]
self.assertTrue(self.data_dir_stage is not None)
self.orig = "orig"
shutil.copy(self.FOO, self.orig)
os.unlink(self.FOO)
self.orig_dir = "orig_dir"
shutil.copytree(self.DATA_DIR, self.orig_dir)
shutil.rmtree(self.DATA_DIR)
def test(self):
self.dvc.checkout(force=True)
self._test_checkout()
def _test_checkout(self):
self.assertTrue(os.path.isfile(self.FOO))
self.assertTrue(filecmp.cmp(self.FOO, self.orig, shallow=False))
dvc.checkout(force=True)
assert (tmp_dir / "foo").read_text() == "foo"
assert (tmp_dir / "data").read_text() == {"file": "file"}
class TestCheckoutSingleStage(TestCheckout):
def test(self):
ret = main(["checkout", "--force", self.foo_stage.path])
self.assertEqual(ret, 0)
def test_checkout_cli(tmp_dir, dvc, copy_script):
tmp_dir.dvc_gen({"foo": "foo", "data": {"file": "file"}})
dvc.run(
fname="file1.dvc",
outs=["file1"],
deps=["foo", "copy.py"],
cmd="python copy.py foo file1",
single_stage=True,
)
remove(tmp_dir / "foo")
remove("data")
ret = main(["checkout", "--force", self.data_dir_stage.path])
self.assertEqual(ret, 0)
assert main(["checkout", "--force"]) == 0
assert (tmp_dir / "foo").read_text() == "foo"
assert (tmp_dir / "data").read_text() == {"file": "file"}
self._test_checkout()
remove(tmp_dir / "foo")
remove("data")
assert main(["checkout", "--force", "foo.dvc"]) == 0
assert main(["checkout", "--force", "data.dvc"]) == 0
assert (tmp_dir / "foo").read_text() == "foo"
assert (tmp_dir / "data").read_text() == {"file": "file"}
class TestCheckoutCorruptedCacheFile(TestRepro):
def test(self):
cache = self.foo_stage.outs[0].cache_path
def test_checkout_corrupted_cache_file(tmp_dir, dvc):
(foo_stage,) = tmp_dir.dvc_gen("foo", "foo")
cache = foo_stage.outs[0].cache_path
os.chmod(cache, 0o644)
with open(cache, "a", encoding="utf-8") as fd:
fd.write("1")
os.chmod(cache, 0o644)
with open(cache, "a", encoding="utf-8") as fd:
fd.write("1")
with pytest.raises(CheckoutError):
self.dvc.checkout(force=True)
with pytest.raises(CheckoutError):
dvc.checkout(force=True)
self.assertFalse(os.path.isfile(self.FOO))
self.assertFalse(os.path.isfile(cache))
assert not os.path.isfile("foo")
assert not os.path.isfile(cache)
class TestCheckoutCorruptedCacheDir(TestDvc):
def test(self):
from dvc_data.hashfile import load
def test_checkout_corrupted_cache_dir(tmp_dir, dvc):
from dvc_data.hashfile import load
# NOTE: using 'copy' so that cache and link don't have same inode
ret = main(["config", "cache.type", "copy"])
self.assertEqual(ret, 0)
tmp_dir.gen("data", {"foo": "foo", "bar": "bar"})
# NOTE: using 'copy' so that cache and link don't have same inode
ret = main(["config", "cache.type", "copy"])
assert ret == 0
self.dvc.config.load()
dvc.config.load()
stages = self.dvc.add(self.DATA_DIR)
self.assertEqual(len(stages), 1)
self.assertEqual(len(stages[0].outs), 1)
out = stages[0].outs[0]
stages = dvc.add("data")
assert len(stages) == 1
assert len(stages[0].outs) == 1
out = stages[0].outs[0]
# NOTE: modifying cache file for one of the files inside the directory
# to check if dvc will detect that the cache is corrupted.
obj = load(self.dvc.odb.local, out.hash_info)
_, _, entry_oid = list(obj)[0]
cache = self.dvc.odb.local.oid_to_path(entry_oid.value)
# NOTE: modifying cache file for one of the files inside the directory
# to check if dvc will detect that the cache is corrupted.
obj = load(dvc.odb.local, out.hash_info)
_, _, entry_oid = list(obj)[0]
cache = dvc.odb.local.oid_to_path(entry_oid.value)
os.chmod(cache, 0o644)
with open(cache, "w+", encoding="utf-8") as fobj:
fobj.write("1")
os.chmod(cache, 0o644)
with open(cache, "w+", encoding="utf-8") as fobj:
fobj.write("1")
with pytest.raises(CheckoutError):
self.dvc.checkout(force=True)
with pytest.raises(CheckoutError):
dvc.checkout(force=True)
self.assertFalse(os.path.exists(cache))
assert not os.path.exists(cache)
class TestCmdCheckout(TestCheckout):
def test(self):
ret = main(["checkout", "--force"])
self.assertEqual(ret, 0)
self._test_checkout()
def test_remove_files_when_checkout(tmp_dir, dvc, scm):
# add the file into a separate branch
scm.checkout("branch", True)
ret = main(["checkout", "--force"])
assert ret == 0
tmp_dir.dvc_gen("file_in_a_branch", "random text", commit="add file")
# Checkout back in master
scm.checkout("master")
assert os.path.exists("file_in_a_branch")
# Make sure `dvc checkout` removes the file
# self.dvc.checkout()
ret = main(["checkout", "--force"])
assert ret == 0
assert not os.path.exists("file_in_a_branch")
class CheckoutBase(TestDvcGit):
GIT_IGNORE = ".gitignore"
def commit_data_file(self, fname, content="random text"):
with open(fname, "w", encoding="utf-8") as fd:
fd.write(content)
stages = self.dvc.add(fname)
self.assertEqual(len(stages), 1)
self.assertTrue(stages[0] is not None)
self.dvc.scm.add([fname + ".dvc", ".gitignore"])
self.dvc.scm.commit("adding " + fname)
def read_ignored(self):
with open(self.GIT_IGNORE, encoding="utf-8") as f:
return [s.strip("\n") for s in f.readlines()]
def outs_info(self, stage):
FileInfo = collections.namedtuple("FileInfo", "path inode")
paths = [
path
for output in stage["outs"]
for path in self.dvc.fs.find(output["path"])
]
return [
FileInfo(path=path, inode=system.inode(path)) for path in paths
]
class TestRemoveFilesWhenCheckout(CheckoutBase):
def test(self):
fname = "file_in_a_branch"
branch_master = "master"
branch_1 = "b1"
self.dvc.scm.add(self.dvc.scm.untracked_files())
self.dvc.scm.commit("add all files")
# add the file into a separate branch
self.dvc.scm.checkout(branch_1, True)
ret = main(["checkout", "--force"])
self.assertEqual(ret, 0)
self.commit_data_file(fname)
# Checkout back in master
self.dvc.scm.checkout(branch_master)
self.assertTrue(os.path.exists(fname))
# Make sure `dvc checkout` removes the file
# self.dvc.checkout()
ret = main(["checkout", "--force"])
self.assertEqual(ret, 0)
self.assertFalse(os.path.exists(fname))
class TestCheckoutCleanWorkingDir(CheckoutBase):
@patch("dvc.prompt.confirm", return_value=True)
def test(self, mock_prompt):
mock_prompt.return_value = True
stages = self.dvc.add(self.DATA_DIR)
stage = stages[0]
working_dir_change = os.path.join(self.DATA_DIR, "not_cached.txt")
with open(working_dir_change, "w", encoding="utf-8") as f:
f.write("not_cached")
ret = main(["checkout", stage.relpath])
self.assertEqual(ret, 0)
self.assertFalse(os.path.exists(working_dir_change))
@patch("dvc.prompt.confirm", return_value=False)
def test_force(self, mock_prompt):
mock_prompt.return_value = False
stages = self.dvc.add(self.DATA_DIR)
self.assertEqual(len(stages), 1)
stage = stages[0]
working_dir_change = os.path.join(self.DATA_DIR, "not_cached.txt")
with open(working_dir_change, "w", encoding="utf-8") as f:
f.write("not_cached")
ret = main(["checkout", stage.relpath])
self.assertNotEqual(ret, 0)
class TestCheckoutCleanWorkingDir:
def test(self, mocker, tmp_dir, dvc): # pylint: disable=unused-argument
mock_prompt = mocker.patch("dvc.prompt.confirm", return_value=True)
(stage,) = tmp_dir.dvc_gen("data", {"foo": "foo"})
# change working directory
(tmp_dir / "data").gen("not_cached.txt", "not_cached")
assert main(["checkout", stage.relpath]) == 0
mock_prompt.assert_called()
self.assertNotEqual(ret, 0)
self.assertRaises(DvcException)
assert not (tmp_dir / "data" / "not_cached.txt").exists()
def test_force(self, mocker, tmp_dir, dvc):
mock_prompt = mocker.patch("dvc.prompt.confirm", return_value=False)
(stage,) = tmp_dir.dvc_gen("data", {"foo": "foo"})
# change working directory
(tmp_dir / "data").gen("not_cached.txt", "not_cached")
assert main(["checkout", stage.relpath]) != 0
mock_prompt.assert_called()
assert (tmp_dir / "data" / "not_cached.txt").exists()
def test_checkout_selective_remove(tmp_dir, dvc):
# Use copy to test for changes in the inodes
dvc.odb.local.cache_types = ["copy"]
tmp_dir.dvc_gen({"data": {"foo": "foo", "bar": "bar"}})
foo_inode = system.inode(os.path.join("data", "foo"))
bar_inode = system.inode(os.path.join("data", "bar"))
# move instead of remove, to lock inode assigned to stage_files[0].path
# if we were to use remove, we might end up with same inode assigned to
# newly checked out file
shutil.move(os.path.join("data", "foo"), "random_name")
assert main(["checkout", "--force", "data.dvc"]) == 0
assert (tmp_dir / "data").read_text() == {"foo": "foo", "bar": "bar"}
assert system.inode(os.path.join("data", "foo")) != foo_inode
assert system.inode(os.path.join("data", "bar")) == bar_inode
def test_gitignore_basic(tmp_dir, dvc, scm):
tmp_dir.gen("foo", "foo")
assert not os.path.exists(scm.GITIGNORE)
tmp_dir.dvc_gen("file1", "random text1", commit="add file1")
tmp_dir.dvc_gen("file2", "random text2", commit="add file2")
dvc.run(
single_stage=True,
cmd="cp foo file3",
deps=["foo"],
outs_no_cache=["file3"],
)
assert get_gitignore_content() == ["/file1", "/file2"]
def test_gitignore_when_checkout(tmp_dir, dvc, scm):
tmp_dir.dvc_gen("file_in_a_master", "master", commit="master")
class TestCheckoutSelectiveRemove(CheckoutBase):
def test(self):
# Use copy to test for changes in the inodes
ret = main(["config", "cache.type", "copy"])
self.assertEqual(ret, 0)
scm.checkout("branch", True)
ret = main(["checkout", "--force"])
assert ret == 0
tmp_dir.dvc_gen("file_in_a_branch", "branch", commit="branch")
scm.checkout("master")
ret = main(["checkout", "--force"])
assert ret == 0
ignored = get_gitignore_content()
assert len(ignored) == 1
assert "/file_in_a_master" in ignored
ret = main(["add", self.DATA_DIR])
self.assertEqual(0, ret)
scm.checkout("branch")
ret = main(["checkout", "--force"])
assert ret == 0
ignored = get_gitignore_content()
assert "/file_in_a_branch" in ignored
def test_checkout_missing_md5_in_stage_file(tmp_dir, dvc, copy_script):
tmp_dir.dvc_gen({"foo": "foo", "data": {"file": "file"}})
stage = dvc.run(
fname="file1.dvc",
outs=["file1"],
deps=["foo", "copy.py"],
cmd="python copy.py foo file1",
single_stage=True,
)
d = load_yaml(stage.relpath)
del d[Stage.PARAM_OUTS][0][LocalFileSystem.PARAM_CHECKSUM]
del d[Stage.PARAM_DEPS][0][LocalFileSystem.PARAM_CHECKSUM]
dump_yaml(stage.relpath, d)
with pytest.raises(CheckoutError):
dvc.checkout(force=True)
def test_checkout_empty_dir(tmp_dir, dvc):
empty_dir = tmp_dir / "empty_dir"
empty_dir.mkdir()
(stage,) = dvc.add("empty_dir")
stage.outs[0].remove()
assert not empty_dir.exists()
stats = dvc.checkout(force=True)
assert stats["added"] == [os.path.join("empty_dir", "")]
assert empty_dir.is_dir()
assert not list(empty_dir.iterdir())
def test_checkout_not_cached_file(tmp_dir, dvc):
tmp_dir.dvc_gen("foo", "foo")
dvc.run(
cmd="cp foo bar",
deps=["foo"],
outs_no_cache=["bar"],
single_stage=True,
)
stats = dvc.checkout(force=True)
assert not any(stats.values())
def test_checkout_with_deps_cli(tmp_dir, dvc, copy_script):
tmp_dir.dvc_gen({"foo": "foo", "data": {"file": "file"}})
dvc.run(
fname="file1.dvc",
outs=["file1"],
deps=["foo", "copy.py"],
cmd="python copy.py foo file1",
single_stage=True,
)
remove("foo")
remove("file1")
assert not os.path.exists("foo")
assert not os.path.exists("file1")
stage_path = self.DATA_DIR + DVC_FILE_SUFFIX
stage = load_yaml(stage_path)
staged_files = self.outs_info(stage)
ret = main(["checkout", "--force", "file1.dvc", "--with-deps"])
assert ret == 0
assert os.path.exists("foo")
assert os.path.exists("file1")
# move instead of remove, to lock inode assigned to stage_files[0].path
# if we were to use remove, we might end up with same inode assigned to
# newly checked out file
shutil.move(staged_files[0].path, "random_name")
ret = main(["checkout", "--force", stage_path])
self.assertEqual(ret, 0)
def test_checkout_directory(tmp_dir, dvc):
(stage,) = tmp_dir.dvc_gen({"data": {"foo": "foo", "bar": "bar"}})
remove("data")
assert not os.path.exists("data")
checkedout_files = self.outs_info(stage)
ret = main(["checkout", stage.path])
assert ret == 0
self.assertEqual(len(staged_files), len(checkedout_files))
self.assertEqual(staged_files[0].path, checkedout_files[0].path)
self.assertNotEqual(staged_files[0].inode, checkedout_files[0].inode)
self.assertEqual(staged_files[1].inode, checkedout_files[1].inode)
assert os.path.exists("data")
class TestGitIgnoreBasic(CheckoutBase):
def test(self):
fname1 = "file_1"
fname2 = "file_2"
fname3 = "file_3"
def test_checkout_hook(mocker, tmp_dir, dvc):
"""Test that dvc checkout handles EOFError gracefully, which is what
it will experience when running in a git hook.
"""
tmp_dir.dvc_gen({"data": {"foo": "foo"}})
mocker.patch("sys.stdout.isatty", return_value=True)
mocker.patch("dvc.prompt.input", side_effect=EOFError)
self.dvc.scm.add(self.dvc.scm.untracked_files())
self.dvc.scm.commit("add all files")
(tmp_dir / "data").gen("test", "test")
with pytest.raises(ConfirmRemoveError):
dvc.checkout()
self.assertFalse(os.path.exists(self.GIT_IGNORE))
self.commit_data_file(fname1)
self.commit_data_file(fname2)
self.dvc.run(
single_stage=True,
cmd=f"python {self.CODE} {self.FOO} {fname3}",
deps=[self.CODE, self.FOO],
outs_no_cache=[fname3],
)
def test_checkout_suggest_git(tmp_dir, dvc, scm):
# pylint: disable=no-member
tmp_dir.dvc_gen("foo", "foo")
try:
dvc.checkout(targets="gitbranch")
except DvcException as exc:
assert isinstance(exc, CheckoutErrorSuggestGit)
assert isinstance(exc.__cause__, NoOutputOrStageError)
assert isinstance(exc.__cause__.__cause__, StageFileDoesNotExistError)
try:
dvc.checkout(targets="foo")
except DvcException as exc:
assert isinstance(exc, CheckoutErrorSuggestGit)
assert isinstance(exc.__cause__, NoOutputOrStageError)
assert exc.__cause__.__cause__ is None
try:
dvc.checkout(targets="looks-like-dvcfile.dvc")
except DvcException as exc:
assert isinstance(exc, CheckoutErrorSuggestGit)
assert isinstance(exc.__cause__, StageFileDoesNotExistError)
assert exc.__cause__.__cause__ is None
self.assertTrue(os.path.exists(self.GIT_IGNORE))
ignored = self.read_ignored()
def test_checkout_target_recursive_should_not_remove_other_used_files(
tmp_dir, dvc
):
tmp_dir.dvc_gen({"foo": "foo", "bar": "bar", "data": {"file": "file"}})
assert main(["checkout", "-R", "data"]) == 0
assert (tmp_dir / "foo").exists()
assert (tmp_dir / "bar").exists()
self.assertEqual(len(ignored), 2)
self.assertIn("/" + fname1, ignored)
self.assertIn("/" + fname2, ignored)
def test_checkout_recursive_not_directory(tmp_dir, dvc):
tmp_dir.gen("foo", "foo")
ret = main(["add", "foo"])
assert ret == 0
stats = dvc.checkout(targets=["foo" + ".dvc"], recursive=True)
assert stats == {"added": [], "modified": [], "deleted": []}
class TestGitIgnoreWhenCheckout(CheckoutBase):
def test(self):
fname_master = "file_in_a_master"
branch_master = "master"
fname_branch = "file_in_a_branch"
branch_1 = "b1"
self.dvc.scm.add(self.dvc.scm.untracked_files())
self.dvc.scm.commit("add all files")
self.commit_data_file(fname_master)
def test_checkout_moved_cache_dir_with_symlinks(tmp_dir, dvc):
tmp_dir.gen({"foo": "foo", "data": {"file": "file"}})
ret = main(["config", "cache.type", "symlink"])
assert ret == 0
self.dvc.scm.checkout(branch_1, True)
ret = main(["checkout", "--force"])
self.assertEqual(ret, 0)
self.commit_data_file(fname_branch)
ret = main(["add", "foo"])
assert ret == 0
self.dvc.scm.checkout(branch_master)
ret = main(["checkout", "--force"])
self.assertEqual(ret, 0)
ret = main(["add", "data"])
assert ret == 0
ignored = self.read_ignored()
assert system.is_symlink("foo")
old_foo_link = os.path.realpath("foo")
self.assertEqual(len(ignored), 1)
self.assertIn("/" + fname_master, ignored)
assert system.is_symlink(os.path.join("data", "file"))
old_data_link = os.path.realpath(os.path.join("data", "file"))
self.dvc.scm.checkout(branch_1)
ret = main(["checkout", "--force"])
self.assertEqual(ret, 0)
ignored = self.read_ignored()
self.assertIn("/" + fname_branch, ignored)
old_cache_dir = dvc.odb.local.path
new_cache_dir = old_cache_dir + "_new"
os.rename(old_cache_dir, new_cache_dir)
ret = main(["cache", "dir", new_cache_dir])
assert ret == 0
class TestCheckoutMissingMd5InStageFile(TestRepro):
def test(self):
d = load_yaml(self.file1_stage)
del d[Stage.PARAM_OUTS][0][LocalFileSystem.PARAM_CHECKSUM]
del d[Stage.PARAM_DEPS][0][LocalFileSystem.PARAM_CHECKSUM]
dump_yaml(self.file1_stage, d)
ret = main(["checkout", "-f"])
assert ret == 0
with pytest.raises(CheckoutError):
self.dvc.checkout(force=True)
assert system.is_symlink("foo")
new_foo_link = os.path.realpath("foo")
assert system.is_symlink(os.path.join("data", "file"))
new_data_link = os.path.realpath(os.path.join("data", "file"))
class TestCheckoutEmptyDir(TestDvc):
def test(self):
dname = "empty_dir"
os.mkdir(dname)
assert relpath(old_foo_link, old_cache_dir) == relpath(
new_foo_link, new_cache_dir
)
stages = self.dvc.add(dname)
self.assertEqual(len(stages), 1)
stage = stages[0]
self.assertTrue(stage is not None)
self.assertEqual(len(stage.outs), 1)
stage.outs[0].remove()
self.assertFalse(os.path.exists(dname))
stats = self.dvc.checkout(force=True)
assert stats["added"] == [dname + os.sep]
self.assertTrue(os.path.isdir(dname))
self.assertEqual(len(os.listdir(dname)), 0)
class TestCheckoutNotCachedFile(TestDvc):
def test(self):
cmd = "python {} {} {}".format(self.CODE, self.FOO, "out")
self.dvc.add(self.FOO)
stage = self.dvc.run(
cmd=cmd,
deps=[self.FOO, self.CODE],
outs_no_cache=["out"],
single_stage=True,
)
self.assertTrue(stage is not None)
stats = self.dvc.checkout(force=True)
assert not any(stats.values())
class TestCheckoutWithDeps(TestRepro):
def test(self):
os.unlink(self.FOO)
os.unlink(self.file1)
self.assertFalse(os.path.exists(self.FOO))
self.assertFalse(os.path.exists(self.file1))
ret = main(["checkout", "--force", self.file1_stage, "--with-deps"])
self.assertEqual(ret, 0)
self.assertTrue(os.path.exists(self.FOO))
self.assertTrue(os.path.exists(self.file1))
class TestCheckoutDirectory(TestRepro):
def test(self):
stage = self.dvc.add(self.DATA_DIR)[0]
shutil.rmtree(self.DATA_DIR)
self.assertFalse(os.path.exists(self.DATA_DIR))
ret = main(["checkout", stage.path])
self.assertEqual(ret, 0)
self.assertTrue(os.path.exists(self.DATA_DIR))
class TestCheckoutHook(TestDvc):
@patch("sys.stdout.isatty", return_value=True)
@patch("dvc.prompt.input", side_effect=EOFError)
def test(self, _mock_input, _mock_isatty):
"""Test that dvc checkout handles EOFError gracefully, which is what
it will experience when running in a git hook.
"""
stages = self.dvc.add(self.DATA_DIR)
self.assertEqual(len(stages), 1)
stage = stages[0]
self.assertNotEqual(stage, None)
self.create(os.path.join(self.DATA_DIR, "test"), "test")
with self.assertRaises(ConfirmRemoveError):
self.dvc.checkout()
class TestCheckoutSuggestGit(TestRepro):
def test(self):
# pylint: disable=no-member
try:
self.dvc.checkout(targets="gitbranch")
except DvcException as exc:
self.assertIsInstance(exc, CheckoutErrorSuggestGit)
self.assertIsInstance(exc.__cause__, NoOutputOrStageError)
self.assertIsInstance(
exc.__cause__.__cause__, StageFileDoesNotExistError
)
try:
self.dvc.checkout(targets=self.FOO)
except DvcException as exc:
self.assertIsInstance(exc, CheckoutErrorSuggestGit)
self.assertIsInstance(exc.__cause__, NoOutputOrStageError)
self.assertIsNone(exc.__cause__.__cause__)
try:
self.dvc.checkout(targets="looks-like-dvcfile.dvc")
except DvcException as exc:
self.assertIsInstance(exc, CheckoutErrorSuggestGit)
self.assertIsInstance(exc.__cause__, StageFileDoesNotExistError)
self.assertIsNone(exc.__cause__.__cause__)
class TestCheckoutTargetRecursiveShouldNotRemoveOtherUsedFiles(TestDvc):
def test(self):
ret = main(["add", self.DATA_DIR, self.FOO, self.BAR])
self.assertEqual(0, ret)
ret = main(["checkout", "-R", self.DATA_DIR])
self.assertEqual(0, ret)
self.assertTrue(os.path.exists(self.FOO))
self.assertTrue(os.path.exists(self.BAR))
class TestCheckoutRecursiveNotDirectory(TestDvc):
def test(self):
ret = main(["add", self.FOO])
self.assertEqual(0, ret)
stats = self.dvc.checkout(targets=[self.FOO + ".dvc"], recursive=True)
assert stats == {"added": [], "modified": [], "deleted": []}
class TestCheckoutMovedCacheDirWithSymlinks(TestDvc):
def test(self):
ret = main(["config", "cache.type", "symlink"])
self.assertEqual(ret, 0)
ret = main(["add", self.FOO])
self.assertEqual(ret, 0)
ret = main(["add", self.DATA_DIR])
self.assertEqual(ret, 0)
self.assertTrue(system.is_symlink(self.FOO))
old_foo_link = os.path.realpath(self.FOO)
self.assertTrue(system.is_symlink(self.DATA))
old_data_link = os.path.realpath(self.DATA)
old_cache_dir = self.dvc.odb.local.path
new_cache_dir = old_cache_dir + "_new"
os.rename(old_cache_dir, new_cache_dir)
ret = main(["cache", "dir", new_cache_dir])
self.assertEqual(ret, 0)
ret = main(["checkout", "-f"])
self.assertEqual(ret, 0)
self.assertTrue(system.is_symlink(self.FOO))
new_foo_link = os.path.realpath(self.FOO)
self.assertTrue(system.is_symlink(self.DATA))
new_data_link = os.path.realpath(self.DATA)
self.assertEqual(
relpath(old_foo_link, old_cache_dir),
relpath(new_foo_link, new_cache_dir),
)
self.assertEqual(
relpath(old_data_link, old_cache_dir),
relpath(new_data_link, new_cache_dir),
)
assert relpath(old_data_link, old_cache_dir) == relpath(
new_data_link, new_cache_dir
)
def test_checkout_no_checksum(tmp_dir, dvc):
+137 -147
View File
@@ -1,5 +1,7 @@
import os
import pytest
from dvc.cli import DvcParserError, parse_args
from dvc.cli.command import CmdBase
from dvc.commands.add import CmdAdd
@@ -12,200 +14,188 @@ from dvc.commands.repro import CmdRepro
from dvc.commands.run import CmdRun
from dvc.commands.status import CmdDataStatus
from dvc.exceptions import DvcException
from tests.basic_env import TestDvc
class TestArgParse(TestDvc):
def test(self):
args = parse_args(["init"])
self.assertIsInstance(args.func(args), CmdInit)
def test_argparse(dvc):
args = parse_args(["init"])
assert isinstance(args.func(args), CmdInit)
class TestRun(TestDvc):
def test(self):
dep1 = "dep1"
dep2 = "dep2"
def test_run(dvc):
dep1 = "dep1"
dep2 = "dep2"
out1 = "out1"
out2 = "out2"
out1 = "out1"
out2 = "out2"
out_no_cache1 = "out_no_cache1"
out_no_cache2 = "out_no_cache2"
out_no_cache1 = "out_no_cache1"
out_no_cache2 = "out_no_cache2"
fname = "dvc.dvc"
cmd = "cmd"
arg1 = "arg1"
arg2 = "arg2"
fname = "dvc.dvc"
cmd = "cmd"
arg1 = "arg1"
arg2 = "arg2"
args = parse_args(
[
"run",
"-d",
dep1,
"--deps",
dep2,
"-o",
out1,
"--outs",
out2,
"-O",
out_no_cache1,
"--outs-no-cache",
out_no_cache2,
"--file",
fname,
cmd,
arg1,
arg2,
]
)
cmd_cls = args.func(args)
self.assertIsInstance(cmd_cls, CmdRun)
self.assertEqual(args.deps, [dep1, dep2])
self.assertEqual(args.outs, [out1, out2])
self.assertEqual(args.outs_no_cache, [out_no_cache1, out_no_cache2])
self.assertEqual(args.file, fname)
self.assertEqual(args.command, [cmd, arg1, arg2])
args = parse_args(
[
"run",
"-d",
dep1,
"--deps",
dep2,
"-o",
out1,
"--outs",
out2,
"-O",
out_no_cache1,
"--outs-no-cache",
out_no_cache2,
"--file",
fname,
cmd,
arg1,
arg2,
]
)
cmd_cls = args.func(args)
assert isinstance(cmd_cls, CmdRun)
assert args.deps == [dep1, dep2]
assert args.outs == [out1, out2]
assert args.outs_no_cache == [out_no_cache1, out_no_cache2]
assert args.file == fname
assert args.command == [cmd, arg1, arg2]
cmd_cls.repo.close()
cmd_cls.repo.close()
class TestPull(TestDvc):
def test(self):
args = parse_args(["pull"])
cmd = args.func(args)
self.assertIsInstance(cmd, CmdDataPull)
def test_pull(dvc):
args = parse_args(["pull"])
cmd = args.func(args)
assert isinstance(cmd, CmdDataPull)
cmd.repo.close()
cmd.repo.close()
class TestPush(TestDvc):
def test(self):
args = parse_args(["push"])
cmd = args.func(args)
self.assertIsInstance(cmd, CmdDataPush)
def test_push(dvc):
args = parse_args(["push"])
cmd = args.func(args)
assert isinstance(cmd, CmdDataPush)
cmd.repo.close()
cmd.repo.close()
class TestStatus(TestDvc):
def test(self):
args = parse_args(["status"])
cmd = args.func(args)
self.assertIsInstance(cmd, CmdDataStatus)
def test_status(dvc):
args = parse_args(["status"])
cmd = args.func(args)
assert isinstance(cmd, CmdDataStatus)
cmd.repo.close()
cmd.repo.close()
class TestRepro(TestDvc):
def test(self):
target1 = "1"
target2 = "2"
def test_repro(dvc):
target1 = "1"
target2 = "2"
args = parse_args(
["repro", target1, target2, "-f", "--force", "-s", "--single-item"]
)
args = parse_args(
["repro", target1, target2, "-f", "--force", "-s", "--single-item"]
)
cmd = args.func(args)
self.assertIsInstance(cmd, CmdRepro)
self.assertEqual(args.targets, [target1, target2])
self.assertEqual(args.force, True)
self.assertEqual(args.single_item, True)
cmd = args.func(args)
assert isinstance(cmd, CmdRepro)
assert args.targets == [target1, target2]
assert args.force
assert args.single_item
cmd.repo.close()
cmd.repo.close()
class TestRemove(TestDvc):
def test(self):
target1 = "1"
target2 = "2"
def test_remove(dvc):
target1 = "1"
target2 = "2"
args = parse_args(["remove", target1, target2])
args = parse_args(["remove", target1, target2])
cmd = args.func(args)
self.assertIsInstance(cmd, CmdRemove)
self.assertEqual(args.targets, [target1, target2])
cmd = args.func(args)
assert isinstance(cmd, CmdRemove)
assert args.targets == [target1, target2]
cmd.repo.close()
cmd.repo.close()
class TestAdd(TestDvc):
def test(self):
target1 = "1"
target2 = "2"
def test_add(dvc):
target1 = "1"
target2 = "2"
args = parse_args(["add", target1, target2])
args = parse_args(["add", target1, target2])
cmd = args.func(args)
self.assertIsInstance(cmd, CmdAdd)
self.assertEqual(args.targets, [target1, target2])
cmd = args.func(args)
assert isinstance(cmd, CmdAdd)
assert args.targets == [target1, target2]
cmd.repo.close()
cmd.repo.close()
class TestConfig(TestDvc):
def test(self):
name = "section.option"
value = "1"
def test_config_unset(dvc):
name = "section.option"
value = "1"
args = parse_args(["config", "-u", "--unset", name, value])
args = parse_args(["config", "-u", "--unset", name, value])
cmd = args.func(args)
self.assertIsInstance(cmd, CmdConfig)
self.assertEqual(args.unset, True)
self.assertEqual(args.name, (False, "section", "option"))
self.assertEqual(args.value, value)
def test_config_list(self):
args = parse_args(["config", "--list"])
self.assertTrue(args.list)
self.assertIsNone(args.name)
self.assertIsNone(args.value)
cmd = args.func(args)
assert isinstance(cmd, CmdConfig)
assert args.unset
assert args.name == (False, "section", "option")
assert args.value == value
class TestCheckout(TestDvc):
def test(self):
args = parse_args(["checkout"])
cmd = args.func(args)
self.assertIsInstance(cmd, CmdCheckout)
def test_config_list():
args = parse_args(["config", "--list"])
cmd.repo.close()
assert args.list
assert args.name is None
assert args.value is None
class TestFindRoot(TestDvc):
def test(self):
class Cmd(CmdBase):
def run(self):
pass
def test_checkout(dvc):
args = parse_args(["checkout"])
cmd = args.func(args)
assert isinstance(cmd, CmdCheckout)
class A:
quiet = False
verbose = True
cd = os.path.pardir
args = A()
with self.assertRaises(DvcException):
Cmd(args)
cmd.repo.close()
class TestCd(TestDvc):
def test(self):
class Cmd(CmdBase):
def run(self):
pass
def test_find_root(dvc):
class Cmd(CmdBase):
def run(self):
pass
class A:
quiet = False
verbose = True
cd = os.path.pardir
class A:
quiet = False
verbose = True
cd = os.path.pardir
parent_dir = os.path.realpath(os.path.pardir)
args = A()
with self.assertRaises(DvcException):
Cmd(args)
current_dir = os.path.realpath(os.path.curdir)
self.assertEqual(parent_dir, current_dir)
args = A()
with pytest.raises(DvcException):
Cmd(args)
def test_cd(dvc):
class Cmd(CmdBase):
def run(self):
pass
class A:
quiet = False
verbose = True
cd = os.path.pardir
parent_dir = os.path.realpath(os.path.pardir)
args = A()
with pytest.raises(DvcException):
Cmd(args)
current_dir = os.path.realpath(os.path.curdir)
assert parent_dir == current_dir
def test_unknown_command_help(capsys):
+3
View File
@@ -418,6 +418,7 @@ def test_dvcfile_load_dump_stage_with_desc_meta(tmp_dir, dvc):
"plots": {
"path/to/plot": {"x": "value", "y": "value"},
"path/to/another/plot": {"x": "value", "y": "value"},
"path/to/empty/plot": None,
},
"stages": STAGE_EXAMPLE,
},
@@ -425,6 +426,8 @@ def test_dvcfile_load_dump_stage_with_desc_meta(tmp_dir, dvc):
"plots": [
{"path/to/plot": {"x": "value", "y": "value"}},
{"path/to/another/plot": {"x": "value", "y": "value"}},
{"path/to/empty/plot": None},
"path/to/plot/str",
],
"stages": STAGE_EXAMPLE,
},
+56 -150
View File
@@ -2,186 +2,92 @@ import logging
import os
import shutil
import configobj
import pytest
from git import Repo
from dvc.cli import main
from dvc.exceptions import CollectCacheError
from dvc.fs import LocalFileSystem
from dvc.repo import Repo as DvcRepo
from dvc.utils.fs import remove
from dvc_data.hashfile.db.local import LocalHashFileDB
from tests.basic_env import TestDvcGit
class TestGC(TestDvcGit):
def setUp(self):
super().setUp()
@pytest.fixture
def good_and_bad_cache(tmp_dir, dvc):
tmp_dir.dvc_gen("foo", "foo")
(stage,) = tmp_dir.dvc_gen(
"data",
{"sub": {"data_sub": "data_sub", "data": "data", "тест": "проверка"}},
)
raw_dir_hash = stage.outs[0].hash_info.as_raw().value
odb = dvc.odb.local
self.dvc.add(self.FOO)
stages = self.dvc.add(self.DATA_DIR)
raw_dir_hash = stages[0].outs[0].hash_info.as_raw().value
bad_cache = {raw_dir_hash}
for i in ["123", "234", "345"]:
odb.add_bytes(i, i.encode("utf8"))
bad_cache.add(i)
self.good_cache = [
self.dvc.odb.local.oid_to_path(md5)
for md5 in self.dvc.odb.local.all()
if md5 != raw_dir_hash
]
self.bad_cache = [self.dvc.odb.local.oid_to_path(raw_dir_hash)]
for i in ["123", "234", "345"]:
path = os.path.join(self.dvc.odb.local.path, i[0:2], i[2:])
self.create(path, i)
self.bad_cache.append(path)
def test_api(self):
self.dvc.gc(workspace=True)
self._test_gc()
def test_cli(self):
ret = main(["gc", "-wf"])
self.assertEqual(ret, 0)
self._test_gc()
def _test_gc(self):
self.assertTrue(os.path.isdir(self.dvc.odb.local.path))
for c in self.bad_cache:
self.assertFalse(os.path.exists(c))
for c in self.good_cache:
self.assertTrue(os.path.exists(c))
good_cache = {md5 for md5 in odb.all() if md5 not in bad_cache}
return good_cache, bad_cache
class TestGCBranchesTags(TestDvcGit):
def _check_cache(self, num):
total = 0
for _, _, files in os.walk(os.path.join(".dvc", "cache")):
total += len(files)
self.assertEqual(total, num)
def test(self):
fname = "file"
with open(fname, "w+", encoding="utf-8") as fobj:
fobj.write("v1.0")
stages = self.dvc.add(fname)
self.assertEqual(len(stages), 1)
self.dvc.scm.add([".gitignore", stages[0].relpath])
self.dvc.scm.commit("v1.0")
self.dvc.scm.tag("v1.0")
self.dvc.scm.checkout("test", create_new=True)
self.dvc.remove(stages[0].relpath)
with open(fname, "w+", encoding="utf-8") as fobj:
fobj.write("test")
stages = self.dvc.add(fname)
self.assertEqual(len(stages), 1)
self.dvc.scm.add([".gitignore", stages[0].relpath])
self.dvc.scm.commit("test")
self.dvc.scm.checkout("master")
self.dvc.remove(stages[0].relpath)
with open(fname, "w+", encoding="utf-8") as fobj:
fobj.write("trash")
stages = self.dvc.add(fname)
self.assertEqual(len(stages), 1)
self.dvc.scm.add([".gitignore", stages[0].relpath])
self.dvc.scm.commit("trash")
self.dvc.remove(stages[0].relpath)
with open(fname, "w+", encoding="utf-8") as fobj:
fobj.write("master")
stages = self.dvc.add(fname)
self.assertEqual(len(stages), 1)
self.dvc.scm.add([".gitignore", stages[0].relpath])
self.dvc.scm.commit("master")
self._check_cache(4)
self.dvc.gc(all_tags=True, all_branches=True)
self._check_cache(3)
self.dvc.gc(all_tags=False, all_branches=True)
self._check_cache(2)
self.dvc.gc(all_tags=True, all_branches=False)
self._check_cache(1)
def test_gc_api(dvc, good_and_bad_cache):
dvc.gc(workspace=True)
odb = dvc.odb.local
good_cache, bad_cache = good_and_bad_cache
assert set(odb.oids_exist([*good_cache, *bad_cache])) == good_cache
class TestGCMultipleDvcRepos(TestDvcGit):
def _check_cache(self, num):
total = 0
for _, _, files in os.walk(os.path.join(".dvc", "cache")):
total += len(files)
self.assertEqual(total, num)
def test_gc_cli(dvc, good_and_bad_cache):
assert main(["gc", "-wf"]) == 0
odb = dvc.odb.local
good_cache, bad_cache = good_and_bad_cache
assert set(odb.oids_exist([*good_cache, *bad_cache])) == good_cache
def setUp(self):
super().setUp()
self.additional_path = self.mkdtemp()
self.additional_git = Repo.init(self.additional_path)
self.additional_dvc = DvcRepo.init(self.additional_path)
cache_path = os.path.join(self._root_dir, ".dvc", "cache")
config_path = os.path.join(
self.additional_path, ".dvc", "config.local"
)
cfg = configobj.ConfigObj()
cfg.filename = config_path
cfg["cache"] = {"dir": cache_path}
cfg.write()
def test_gc_branches_tags(tmp_dir, dvc, scm):
tmp_dir.dvc_gen("file", "v1.0", commit="v1.0")
scm.tag("v1.0")
self.additional_dvc = DvcRepo(self.additional_path)
with tmp_dir.branch("test", new=True):
dvc.remove("file.dvc")
tmp_dir.dvc_gen("file", "test", commit="test")
def test(self):
dvc.remove("file.dvc")
tmp_dir.dvc_gen("file", "trash", commit="trash")
# ADD FILE ONLY IN MAIN PROJECT
fname = "only_in_first"
with open(fname, "w+", encoding="utf-8") as fobj:
fobj.write("only in main repo")
dvc.remove("file.dvc")
tmp_dir.dvc_gen("file", "master", commit="trash")
stages = self.dvc.add(fname)
self.assertEqual(len(stages), 1)
odb = dvc.odb.local
assert len(list(odb.all())) == 4
# ADD FILE IN MAIN PROJECT THAT IS ALSO IN SECOND PROJECT
fname = "in_both"
with open(fname, "w+", encoding="utf-8") as fobj:
fobj.write("in both repos")
dvc.gc(all_tags=True, all_branches=True)
assert len(list(odb.all())) == 3
stages = self.dvc.add(fname)
self.assertEqual(len(stages), 1)
dvc.gc(all_tags=False, all_branches=True)
assert len(list(odb.all())) == 2
cwd = os.getcwd()
os.chdir(self.additional_path)
# ADD FILE ONLY IN SECOND PROJECT
fname = "only_in_second"
with open(fname, "w+", encoding="utf-8") as fobj:
fobj.write("only in additional repo")
dvc.gc(all_tags=True, all_branches=False)
assert len(list(odb.all())) == 1
stages = self.additional_dvc.add(fname)
self.assertEqual(len(stages), 1)
# ADD FILE IN SECOND PROJECT THAT IS ALSO IN MAIN PROJECT
fname = "in_both"
with open(fname, "w+", encoding="utf-8") as fobj:
fobj.write("in both repos")
def test_gc_multiple_dvc_repos(tmp_dir, scm, dvc, erepo_dir):
tmp_dir.dvc_gen("only_in_first", "only in main repo")
tmp_dir.dvc_gen("in_both", "in both repos")
stages = self.additional_dvc.add(fname)
self.assertEqual(len(stages), 1)
erepo_dir.dvc.odb.local.path = dvc.odb.local.path
with erepo_dir.chdir():
erepo_dir.dvc_gen("in_both", "in both repos")
erepo_dir.dvc_gen("only_in_second", "only in additional repo")
os.chdir(cwd)
odb = dvc.odb.local
assert len(list(odb.all())) == 3
self._check_cache(3)
dvc.gc(repos=[erepo_dir], workspace=True)
assert len(list(odb.all())) == 3
self.dvc.gc(repos=[self.additional_path], workspace=True)
self._check_cache(3)
self.dvc.gc(workspace=True)
self._check_cache(2)
dvc.gc(workspace=True)
assert len(list(odb.all())) == 2
def test_all_commits(tmp_dir, scm, dvc):
+13 -14
View File
@@ -1,6 +1,5 @@
import filecmp
import os
from unittest.mock import patch
import pytest
from funcy import first
@@ -49,7 +48,7 @@ def test_import_git_file(tmp_dir, scm, dvc, git_dir, src_is_dvc):
}
def test_import_cached_file(erepo_dir, tmp_dir, dvc, scm, monkeypatch):
def test_import_cached_file(mocker, erepo_dir, tmp_dir, dvc, scm, monkeypatch):
src = "some_file"
dst = "some_file_imported"
@@ -60,10 +59,10 @@ def test_import_cached_file(erepo_dir, tmp_dir, dvc, scm, monkeypatch):
(tmp_dir / dst).unlink()
remote_exception = NoRemoteError("dvc import")
with patch.object(
mocker.patch.object(
dvc.cloud, "get_remote_odb", side_effect=remote_exception
):
tmp_dir.dvc.imp(os.fspath(erepo_dir), src, dst)
)
tmp_dir.dvc.imp(os.fspath(erepo_dir), src, dst)
assert (tmp_dir / dst).is_file()
assert filecmp.cmp(erepo_dir / src, tmp_dir / dst, shallow=False)
@@ -305,7 +304,7 @@ def test_pull_imported_directory_stage(tmp_dir, dvc, erepo_dir):
dvc.imp(os.fspath(erepo_dir), "dir", "dir_imported")
remove("dir_imported")
remove(dvc.odb.local.path)
dvc.odb.local.clear()
dvc.pull(["dir_imported.dvc"])
@@ -321,7 +320,7 @@ def test_pull_wildcard_imported_directory_stage(tmp_dir, dvc, erepo_dir):
dvc.imp(os.fspath(erepo_dir), "dir123", "dir_imported123")
remove("dir_imported123")
remove(dvc.odb.local.path)
dvc.odb.local.clear()
dvc.pull(["dir_imported*.dvc"], glob=True)
@@ -357,7 +356,9 @@ def test_push_wildcard_from_bare_git_repo(
dvc_repo.dvc.imp(os.fspath(tmp_dir), "dir123")
def test_download_error_pulling_imported_stage(tmp_dir, dvc, erepo_dir):
def test_download_error_pulling_imported_stage(
mocker, tmp_dir, dvc, erepo_dir
):
with erepo_dir.chdir():
erepo_dir.dvc_gen("foo", "foo content", commit="create foo")
dvc.imp(os.fspath(erepo_dir), "foo", "foo_imported")
@@ -368,9 +369,8 @@ def test_download_error_pulling_imported_stage(tmp_dir, dvc, erepo_dir):
remove("foo_imported")
remove(dst_cache)
with patch(
"dvc_objects.fs.generic.transfer", side_effect=Exception
), pytest.raises(DownloadError):
mocker.patch("dvc_objects.fs.generic.transfer", side_effect=Exception)
with pytest.raises(DownloadError):
dvc.pull(["foo_imported.dvc"])
@@ -546,9 +546,8 @@ def test_pull_imported_stage_from_subrepos(
dvc.imp(os.fspath(erepo_dir), path, out="out")
# clean everything
remove(dvc.odb.local.path)
dvc.odb.local.clear()
remove("out")
makedirs(dvc.odb.local.path)
stats = dvc.pull(["out.dvc"])
@@ -633,7 +632,7 @@ def test_chained_import(tmp_dir, dvc, make_tmp_dir, erepo_dir, local_cloud):
assert (dst / "foo").read_text() == "foo"
assert (dst / "bar").read_text() == "bar"
remove(dvc.odb.local.path)
dvc.odb.local.clear()
remove("dir_imported")
# pulled objects should come from the original upstream repo's remote,
+33 -42
View File
@@ -13,37 +13,32 @@ from dvc.exceptions import InvalidArgumentError
from dvc.stage import Stage
from dvc.testing.workspace_tests import TestImport as _TestImport
from dvc.utils.fs import makedirs
from tests.basic_env import TestDvc
class TestCmdImport(TestDvc):
def test(self):
ret = main(["import-url", self.FOO, "import"])
self.assertEqual(ret, 0)
self.assertTrue(os.path.exists("import.dvc"))
def test_cmd_import(tmp_dir, dvc):
tmp_dir.gen("foo", "foo")
ret = main(["import-url", "foo", "import"])
assert ret == 0
assert os.path.exists("import.dvc")
ret = main(["import-url", "non-existing-file", "import"])
self.assertNotEqual(ret, 0)
def test_unsupported(self):
ret = main(["import-url", "unsupported://path", "import_unsupported"])
self.assertNotEqual(ret, 0)
ret = main(["import-url", "non-existing-file", "import"])
assert ret != 0
class TestDefaultOutput(TestDvc):
def test(self):
tmpdir = self.mkdtemp()
filename = str(uuid4())
tmpfile = os.path.join(tmpdir, filename)
def test_cmd_unsupported_scheme(dvc):
ret = main(["import-url", "unsupported://path", "import_unsupported"])
assert ret != 0
with open(tmpfile, "w", encoding="utf-8") as fd:
fd.write("content")
ret = main(["import-url", tmpfile])
self.assertEqual(ret, 0)
self.assertTrue(os.path.exists(filename))
with open(filename, encoding="utf-8") as fd:
self.assertEqual(fd.read(), "content")
def test_default_output(tmp_dir, dvc, cloud):
filename = str(uuid4())
tmpfile = cloud / filename
tmpfile.write_bytes(b"content")
cloud.gen(filename, "content")
ret = main(["import-url", tmpfile.fs_path])
assert ret == 0
assert (tmp_dir / filename).read_bytes() == b"content"
def test_should_remove_outs_before_import(tmp_dir, dvc, mocker, erepo_dir):
@@ -56,26 +51,22 @@ def test_should_remove_outs_before_import(tmp_dir, dvc, mocker, erepo_dir):
assert remove_outs_call_counter.mock.call_count == 1
class TestImportFilename(TestDvc):
def setUp(self):
super().setUp()
tmp_dir = self.mkdtemp()
self.external_source = os.path.join(tmp_dir, "file")
with open(self.external_source, "w", encoding="utf-8") as fobj:
fobj.write("content")
def test_import_filename(tmp_dir, dvc, cloud):
external_source = cloud / "file"
(cloud / "file").write_text("content", encoding="utf-8")
ret = main(["import-url", "--file", "bar.dvc", external_source.fs_path])
assert ret == 0
assert (tmp_dir / "bar.dvc").exists()
def test(self):
ret = main(["import-url", "--file", "bar.dvc", self.external_source])
self.assertEqual(0, ret)
self.assertTrue(os.path.exists("bar.dvc"))
(tmp_dir / "bar.dvc").unlink()
(tmp_dir / "sub").mkdir()
os.remove("bar.dvc")
os.mkdir("sub")
path = os.path.join("sub", "bar.dvc")
ret = main(["import-url", "--file", path, self.external_source, "out"])
self.assertEqual(0, ret)
self.assertTrue(os.path.exists(path))
path = tmp_dir / "sub" / "bar.dvc"
ret = main(
["import-url", "--file", path.fs_path, external_source.fs_path, "out"]
)
assert ret == 0
assert path.exists()
@pytest.mark.parametrize("dname", [".", "dir", "dir/subdir"])
+1 -1
View File
@@ -64,7 +64,7 @@ def test_init_quiet_should_not_display_welcome_screen(tmp_dir, scm, caplog):
with caplog.at_level(logging.INFO, logger="dvc"):
ret = main(["init", "--quiet"])
assert 0 == ret
assert ret == 0
assert "" == caplog.text
-228
View File
@@ -1,228 +0,0 @@
from copy import deepcopy
from textwrap import dedent
import pytest
from funcy import first
from dvc import stage as stage_module
pytest.importorskip("dvclive", reason="no dvclive")
LIVE_SCRIPT = dedent(
"""
from dvclive import Live
from PIL import Image
import sys
r = 2
metrics_logger = Live()
for i in range(r):
metrics_logger.log("loss", 1-i/r)
metrics_logger.log("accuracy", i/r)
image = Image.new("RGB", (10,10), (i,i,i))
metrics_logger.log_image("image.jpg", image)
metrics_logger.next_step()"""
)
LIVE_CHECKPOINT_SCRIPT = dedent(
"""
import os
from dvclive import Live
def read(path):
value=0
if os.path.exists(path):
with open(path, 'r') as fobj:
try:
value = int(fobj.read())
except ValueError:
pass
return value
def dump(value, path):
with open(path, "w") as fobj:
fobj.write(str(value))
r = 3
checkpoint_file = "checkpoint"
metrics_logger = Live()
value = read(checkpoint_file)
for i in range(1,r):
m = i + value
dump(m, checkpoint_file)
metrics_logger.log("metric1", m)
metrics_logger.log("metric2", m * 2)
metrics_logger.next_step()"""
)
@pytest.fixture
def live_stage(tmp_dir, scm, dvc, mocker):
mocker.patch("dvc.stage.run.Monitor.AWAIT", 0.01)
def make(
html=True,
live=None,
live_no_cache=None,
code=LIVE_SCRIPT,
):
assert bool(live) != bool(live_no_cache)
tmp_dir.gen("train.py", code)
tmp_dir.gen("params.yaml", "foo: 1")
stage = dvc.run(
cmd="python train.py",
params=["foo"],
deps=["train.py"],
name="live_stage",
live=live,
live_no_cache=live_no_cache,
live_no_html=not html,
)
scm.add(["dvc.yaml", "dvc.lock", "train.py", "params.yaml"])
scm.commit("initial: live_stage")
return stage
yield make
@pytest.mark.parametrize("html", (True, False))
def test_export_config(tmp_dir, dvc, mocker, live_stage, html):
run_spy = mocker.spy(stage_module.run, "_run")
live_stage(html=html, live="logs")
assert run_spy.call_count == 1
_, kwargs = run_spy.call_args
assert "DVCLIVE_PATH" in kwargs["env"]
assert kwargs["env"]["DVCLIVE_PATH"] == "logs"
assert "DVCLIVE_HTML" in kwargs["env"]
assert kwargs["env"]["DVCLIVE_HTML"] == str(int(html))
def test_live_provides_metrics(tmp_dir, dvc, live_stage):
live_stage(live="logs")
assert (tmp_dir / "logs.json").is_file()
assert dvc.metrics.show() == {
"": {
"data": {
"logs.json": {
"data": {"accuracy": 0.5, "loss": 0.5, "step": 1}
}
}
}
}
assert (tmp_dir / "logs").is_dir()
plots_data = dvc.plots.show()
files = list(plots_data["workspace"]["sources"]["data"])
assert "logs/scalars/accuracy.tsv" in files
assert "logs/scalars/loss.tsv" in files
assert "logs/images/0/image.jpg" in files
assert "logs/images/1/image.jpg" in files
@pytest.mark.parametrize("typ", ("live", "live_no_cache"))
def test_experiments_track_summary(tmp_dir, scm, dvc, live_stage, typ):
live_stage(**{typ: "logs"})
baseline_rev = scm.get_rev()
experiments = dvc.experiments.run(targets=["live_stage"], params=["foo=2"])
assert len(experiments) == 1
((exp_rev, _),) = experiments.items()
res = dvc.experiments.show()
assert "logs.json" in res[baseline_rev][exp_rev]["data"]["metrics"].keys()
@pytest.mark.parametrize("html", [True, False])
def test_live_html(tmp_dir, dvc, live_stage, html):
live_stage(live="logs", html=html)
assert (tmp_dir / "logs_dvc_plots" / "index.html").is_file() == html
if html:
html_text = (tmp_dir / "logs_dvc_plots" / "index.html").read_text()
assert 'http-equiv="refresh"' in html_text
@pytest.fixture
def live_checkpoint_stage(tmp_dir, scm, dvc, mocker):
mocker.patch("dvc.stage.run.Monitor.AWAIT", 0.01)
def make(live=None, live_no_cache=None):
assert bool(live) != bool(live_no_cache)
tmp_dir.gen("train.py", LIVE_CHECKPOINT_SCRIPT)
tmp_dir.gen("params.yaml", "foo: 1")
stage = dvc.run(
cmd="python train.py",
params=["foo"],
deps=["train.py"],
name="live_stage",
live=live,
live_no_cache=live_no_cache,
checkpoints=["checkpoint"],
no_exec=True,
)
scm.add(["dvc.yaml", "train.py", "params.yaml", ".gitignore"])
scm.commit("initial: live_stage")
return stage
yield make
def checkpoints_metric(show_results, metric_file, metric_name):
tmp = deepcopy(show_results)
tmp.pop("workspace")
tmp = first(tmp.values())
tmp.pop("baseline")
return [
exp["data"]["metrics"][metric_file]["data"][metric_name]
for exp in tmp.values()
]
@pytest.mark.parametrize("typ", ("live", "live_no_cache"))
def test_live_checkpoints_resume(
tmp_dir, scm, dvc, live_checkpoint_stage, typ
):
stage = live_checkpoint_stage(**{typ: "logs"})
results = dvc.experiments.run(
stage.addressing, params=["foo=2"], tmp_dir=False
)
checkpoint_resume = first(results)
dvc.experiments.run(
stage.addressing, checkpoint_resume=checkpoint_resume, tmp_dir=False
)
results = dvc.experiments.show()
assert checkpoints_metric(results, "logs.json", "step") == [3, 2, 1, 0]
assert checkpoints_metric(results, "logs.json", "metric1") == [4, 3, 2, 1]
assert checkpoints_metric(results, "logs.json", "metric2") == [8, 6, 4, 2]
def test_dvclive_stage_with_different_wdir(tmp_dir, scm, dvc):
(tmp_dir / "subdir").gen("train.py", LIVE_SCRIPT)
(tmp_dir / "subdir" / "params.yaml").dump({"foo": 1})
dvc.stage.add(
cmd="python train.py",
params=["foo"],
deps=["train.py"],
name="live_stage",
live="dvclive",
live_no_html=True,
wdir="subdir",
)
dvc.reproduce()
assert (tmp_dir / "subdir" / "dvclive").is_dir()
assert (tmp_dir / "subdir" / "dvclive.json").is_file()
+87 -156
View File
@@ -4,198 +4,129 @@ import textwrap
import pytest
from dvc.cli import main
from dvc.dvcfile import DVC_FILE_SUFFIX
from dvc.exceptions import DvcException, MoveNotDataSourceError
from dvc.utils.serialize import load_yaml
from tests.basic_env import TestDvc, TestDvcGit
from tests.func.test_repro import TestRepro
from tests.utils import cd
class TestMove(TestDvc):
def test(self):
dst = self.FOO + "1"
self.dvc.add(self.FOO)
self.dvc.move(self.FOO, dst)
def test_move(tmp_dir, dvc):
tmp_dir.dvc_gen("foo", "foo")
dvc.move("foo", "foo1")
self.assertFalse(os.path.isfile(self.FOO))
self.assertTrue(os.path.isfile(dst))
assert not (tmp_dir / "foo").is_file()
assert (tmp_dir / "foo1").is_file()
class TestMoveNonExistentFile(TestDvc):
def test(self):
with self.assertRaises(DvcException):
self.dvc.move("non_existent_file", "dst")
def test_move_non_existent_file(dvc):
with pytest.raises(DvcException):
dvc.move("non_existent_file", "dst")
class TestMoveDirectory(TestDvc):
def test(self):
dst = "dst"
stages = self.dvc.add(self.DATA_DIR)
self.assertEqual(len(stages), 1)
self.assertTrue(stages[0] is not None)
self.dvc.move(self.DATA_DIR, dst)
self.assertFalse(os.path.exists(self.DATA_DIR))
self.assertTrue(os.path.exists(dst))
def test_move_directory(tmp_dir, dvc):
tmp_dir.dvc_gen("data", {"foo": "foo", "bar": "bar"})
dvc.move("data", "dst")
assert not (tmp_dir / "data").is_dir()
assert (tmp_dir / "dst").is_dir()
class TestCmdMove(TestDvc):
def test(self):
stages = self.dvc.add(self.FOO)
self.assertEqual(len(stages), 1)
self.assertTrue(stages[0] is not None)
ret = main(["move", self.FOO, self.FOO + "1"])
self.assertEqual(ret, 0)
ret = main(["move", "non-existing-file", "dst"])
self.assertNotEqual(ret, 0)
def test_cmd_move(tmp_dir, dvc):
tmp_dir.dvc_gen("foo", "foo")
assert main(["move", "foo", "foo" + "1"]) == 0
assert main(["move", "non-existing-file", "dst"]) != 0
class TestMoveNotDataSource(TestRepro):
def test(self):
from dvc.repo import Repo as DvcRepo
def test_move_not_data_source(tmp_dir, dvc):
tmp_dir.dvc_gen("foo", "foo")
dvc.run(
cmd="cp foo file1",
outs=["file1"],
deps=["foo"],
single_stage=True,
)
self.dvc = DvcRepo(self._root_dir)
with self.assertRaises(MoveNotDataSourceError):
self.dvc.move(self.file1, "dst")
with pytest.raises(MoveNotDataSourceError):
dvc.move("file1", "dst")
ret = main(["move", self.file1, "dst"])
self.assertNotEqual(ret, 0)
assert main(["move", "file1", "dst"]) != 0
assert (tmp_dir / "file1").exists()
class TestMoveFileWithExtension(TestDvc):
def test(self):
with open(
os.path.join(self.dvc.root_dir, "file.csv"), "w", encoding="utf-8"
) as fd:
fd.write("1,2,3\n")
def test_move_file_with_extension(tmp_dir, dvc):
tmp_dir.dvc_gen("file.csv", "1,2,3\n")
self.dvc.add("file.csv")
self.assertTrue(os.path.exists("file.csv"))
self.assertTrue(os.path.exists("file.csv.dvc"))
ret = main(["move", "file.csv", "other_name.csv"])
self.assertEqual(ret, 0)
self.assertFalse(os.path.exists("file.csv"))
self.assertFalse(os.path.exists("file.csv.dvc"))
self.assertTrue(os.path.exists("other_name.csv"))
self.assertTrue(os.path.exists("other_name.csv.dvc"))
assert main(["move", "file.csv", "other_name.csv"]) == 0
assert not (tmp_dir / "file.csv").exists()
assert not (tmp_dir / "file.csv.dvc").exists()
assert (tmp_dir / "other_name.csv").exists()
assert (tmp_dir / "other_name.csv.dvc").exists()
class TestMoveFileToDirectory(TestDvc):
def test(self):
foo_dvc_file = self.FOO + DVC_FILE_SUFFIX
ret = main(["add", self.FOO])
self.assertEqual(ret, 0)
self.assertTrue(os.path.exists(foo_dvc_file))
def test_move_file_to_directory(tmp_dir, dvc):
tmp_dir.dvc_gen("foo", "foo")
tmp_dir.gen({"data": {"bar": "bar"}})
new_foo_path = os.path.join(self.DATA_DIR, self.FOO)
new_foo_dvc_path = new_foo_path + DVC_FILE_SUFFIX
ret = main(["move", self.FOO, new_foo_path])
self.assertEqual(ret, 0)
self.assertFalse(os.path.exists(self.FOO))
self.assertFalse(os.path.exists(foo_dvc_file))
self.assertTrue(os.path.exists(new_foo_path))
self.assertTrue(os.path.exists(new_foo_dvc_path))
assert main(["move", "foo", os.path.join("data", "foo")]) == 0
assert not (tmp_dir / "foo").exists()
assert not (tmp_dir / "foo.dvc").exists()
assert (tmp_dir / "data" / "foo").exists()
assert (tmp_dir / "data" / "foo.dvc").exists()
class TestMoveFileToDirectoryWithoutSpecifiedTargetName(TestDvc):
def test(self):
foo_stage_file_path = self.FOO + DVC_FILE_SUFFIX
ret = main(["add", self.FOO])
self.assertEqual(ret, 0)
self.assertTrue(os.path.exists(foo_stage_file_path))
def test_move_file_to_directory_without_specified_target_name(tmp_dir, dvc):
tmp_dir.dvc_gen("foo", "foo")
tmp_dir.gen({"data": {"bar": "bar"}})
target_foo_path = os.path.join(self.DATA_DIR, self.FOO)
target_foo_stage_file_path = target_foo_path + DVC_FILE_SUFFIX
assert main(["move", "foo", "data"]) == 0
assert not (tmp_dir / "foo").exists()
assert not (tmp_dir / "foo.dvc").exists()
assert (tmp_dir / "data" / "foo").exists()
assert (tmp_dir / "data" / "foo.dvc").exists()
ret = main(["move", self.FOO, self.DATA_DIR])
self.assertEqual(ret, 0)
self.assertFalse(os.path.exists(self.FOO))
self.assertFalse(os.path.exists(foo_stage_file_path))
self.assertTrue(os.path.exists(target_foo_path))
self.assertTrue(os.path.exists(target_foo_stage_file_path))
new_stage = load_yaml(target_foo_stage_file_path)
self.assertEqual(self.FOO, new_stage["outs"][0]["path"])
new_stage = (tmp_dir / "data" / "foo.dvc").load_yaml()
assert new_stage["outs"][0]["path"] == "foo"
class TestMoveDirectoryShouldNotOverwriteExisting(TestDvcGit):
def test(self):
dir_name = "dir"
orig_listdir = set(os.listdir(self.DATA_DIR))
def test_move_directory_should_not_overwrite_existing(tmp_dir, dvc, scm):
tmp_dir.dvc_gen({"data": {"foo": "foo"}})
new_dir = tmp_dir / "dir"
new_dir.mkdir()
self.dvc.add(self.DATA_DIR)
os.mkdir(dir_name)
new_dir_name = os.path.join(dir_name, self.DATA_DIR)
self.dvc.move(self.DATA_DIR, dir_name)
data_dir_stage = self.DATA_DIR + DVC_FILE_SUFFIX
self.assertFalse(os.path.exists(self.DATA_DIR))
self.assertFalse(os.path.exists(data_dir_stage))
self.assertTrue(os.path.exists(dir_name))
self.assertEqual(
set(os.listdir(dir_name)),
{".gitignore", data_dir_stage, self.DATA_DIR},
)
self.assertTrue(os.path.exists(new_dir_name))
self.assertTrue(os.path.isfile(new_dir_name + DVC_FILE_SUFFIX))
self.assertEqual(set(os.listdir(new_dir_name)), orig_listdir)
dvc.move("data", "dir")
assert not (tmp_dir / "data").exists()
assert not (tmp_dir / "data.dvc").exists()
assert set(new_dir.iterdir()) == {
new_dir / ".gitignore",
new_dir / "data.dvc",
new_dir / "data",
}
assert set((new_dir / "data").iterdir()) == {new_dir / "data" / "foo"}
class TestMoveFileBetweenDirectories(TestDvc):
def test(self):
data_stage_file = self.DATA + DVC_FILE_SUFFIX
ret = main(["add", self.DATA])
self.assertEqual(ret, 0)
self.assertTrue(os.path.exists(data_stage_file))
def test_move_file_between_directories(tmp_dir, dvc):
tmp_dir.gen({"data": {"foo": "foo"}})
dvc.add(os.path.join("data", "foo"))
new_data_dir = "data_dir2"
os.makedirs(new_data_dir)
(tmp_dir / "data2").mkdir()
ret = main(["move", self.DATA, new_data_dir])
self.assertEqual(ret, 0)
assert main(["move", os.path.join("data", "foo"), "data2"]) == 0
assert not (tmp_dir / "data" / "foo").exists()
assert not (tmp_dir / "data" / "foo.dvc").exists()
assert (tmp_dir / "data2" / "foo").exists()
assert (tmp_dir / "data2" / "foo.dvc").exists()
new_data_path = os.path.join(new_data_dir, os.path.basename(self.DATA))
new_data_stage_file = new_data_path + DVC_FILE_SUFFIX
self.assertFalse(os.path.exists(self.DATA))
self.assertFalse(os.path.exists(data_stage_file))
self.assertTrue(os.path.exists(new_data_path))
self.assertTrue(os.path.exists(new_data_stage_file))
new_stage_file = load_yaml(new_data_stage_file)
self.assertEqual(
os.path.basename(self.DATA), new_stage_file["outs"][0]["path"]
)
d = (tmp_dir / "data2" / "foo.dvc").load_yaml()
assert d["outs"][0]["path"] == "foo"
class TestMoveFileInsideDirectory(TestDvc):
def test(self):
ret = main(["add", self.DATA])
self.assertEqual(ret, 0)
def test_move_file_inside_directory(tmp_dir, dvc):
tmp_dir.gen({"data": {"foo": "foo"}})
file = tmp_dir / "data" / "foo"
dvc.add(file.fs_path)
with cd(self.DATA_DIR):
ret = main(["move", os.path.basename(self.DATA), "data.txt"])
self.assertEqual(ret, 0)
with (tmp_dir / "data").chdir():
assert main(["move", "foo", "data.txt"]) == 0
self.assertFalse(os.path.exists(self.DATA))
data_fullpath = os.path.join(self.DATA_DIR, "data.txt")
dvc_fullpath = os.path.join(self.DATA_DIR, "data.txt.dvc")
self.assertTrue(os.path.exists(data_fullpath))
self.assertTrue(os.path.exists(dvc_fullpath))
assert not file.exists()
assert (tmp_dir / "data" / "data.txt").exists()
assert (tmp_dir / "data" / "data.txt.dvc").exists()
def test_move_should_save_stage_info(tmp_dir, dvc):
+56 -65
View File
@@ -10,58 +10,51 @@ from dvc.cli import main
from dvc.config import Config
from dvc.exceptions import DownloadError, RemoteCacheRequiredError, UploadError
from dvc.utils.fs import remove
from tests.basic_env import TestDvc
class TestRemote(TestDvc):
def test(self):
remotes = ["a", "b", "c"]
def test_remote(dvc):
remotes = ["a", "b", "c"]
self.assertEqual(main(["remote", "list"]), 0)
self.assertNotEqual(main(["remote", "remove", remotes[0]]), 0)
assert main(["remote", "list"]) == 0
assert main(["remote", "remove", remotes[0]]) != 0
for r in remotes:
self.assertEqual(
main(["remote", "add", "--default", r, "s3://bucket/name"]), 0
)
for r in remotes:
assert main(["remote", "add", "--default", r, "s3://bucket/name"]) == 0
self.assertEqual(main(["remote", "list"]), 0)
assert main(["remote", "list"]) == 0
self.assertEqual(
main(["remote", "modify", remotes[0], "checksum_jobs", "1"]), 0
)
self.assertEqual(main(["remote", "remove", remotes[0]]), 0)
assert main(["remote", "modify", remotes[0], "checksum_jobs", "1"]) == 0
assert main(["remote", "remove", remotes[0]]) == 0
self.assertEqual(main(["remote", "list"]), 0)
assert main(["remote", "list"]) == 0
def test_relative_path(self):
dname = os.path.join("..", "path", "to", "dir")
ret = main(["remote", "add", "mylocal", dname])
self.assertEqual(ret, 0)
# NOTE: we are in the repo's root and config is in .dvc/, so
# dir path written to config should be just one level above.
rel = os.path.join("..", dname)
config = configobj.ConfigObj(self.dvc.config.files["repo"])
self.assertEqual(
config['remote "mylocal"']["url"], rel.replace("\\", "/")
)
def test_remote_add_relative_path(dvc):
dname = os.path.join("..", "path", "to", "dir")
ret = main(["remote", "add", "mylocal", dname])
assert ret == 0
def test_overwrite(self):
remote_name = "a"
remote_url = "s3://bucket/name"
self.assertEqual(main(["remote", "add", remote_name, remote_url]), 0)
self.assertEqual(main(["remote", "add", remote_name, remote_url]), 251)
self.assertEqual(
main(["remote", "add", "-f", remote_name, remote_url]), 0
)
# NOTE: we are in the repo's root and config is in .dvc/, so
# dir path written to config should be just one level above.
rel = os.path.join("..", dname)
config = configobj.ConfigObj(dvc.config.files["repo"])
assert config['remote "mylocal"']["url"] == rel.replace("\\", "/")
def test_referencing_other_remotes(self):
assert main(["remote", "add", "foo", "ssh://localhost/"]) == 0
assert main(["remote", "add", "bar", "remote://foo/dvc-storage"]) == 0
config = configobj.ConfigObj(self.dvc.config.files["repo"])
assert config['remote "bar"']["url"] == "remote://foo/dvc-storage"
def test_remote_overwrite(dvc):
remote_name = "a"
remote_url = "s3://bucket/name"
assert main(["remote", "add", remote_name, remote_url]) == 0
assert main(["remote", "add", remote_name, remote_url]) == 251
assert main(["remote", "add", "-f", remote_name, remote_url]) == 0
def test_referencing_other_remotes(dvc):
assert main(["remote", "add", "foo", "ssh://localhost/"]) == 0
assert main(["remote", "add", "bar", "remote://foo/dvc-storage"]) == 0
config = configobj.ConfigObj(dvc.config.files["repo"])
assert config['remote "bar"']["url"] == "remote://foo/dvc-storage"
def test_remove_default(tmp_dir, dvc):
@@ -85,37 +78,35 @@ def test_remove_default(tmp_dir, dvc):
assert local_config.get("core", {}).get("remote") is None
class TestRemoteRemove(TestDvc):
def test(self):
ret = main(["config", "core.checksum_jobs", "1"])
self.assertEqual(ret, 0)
def test_remote_remove(dvc):
ret = main(["config", "core.checksum_jobs", "1"])
assert ret == 0
remote = "mys3"
ret = main(["remote", "add", remote, "s3://bucket/name"])
self.assertEqual(ret, 0)
remote = "mys3"
ret = main(["remote", "add", remote, "s3://bucket/name"])
assert ret == 0
ret = main(["remote", "remove", remote])
self.assertEqual(ret, 0)
ret = main(["remote", "remove", remote])
assert ret == 0
class TestRemoteDefault(TestDvc):
def test(self):
remote = "mys3"
ret = main(["remote", "add", "mys3", "s3://bucket/path"])
self.assertEqual(ret, 0)
def test_remote_default_cmd(dvc):
remote = "mys3"
ret = main(["remote", "add", "mys3", "s3://bucket/path"])
assert ret == 0
ret = main(["remote", "default", "mys3"])
self.assertEqual(ret, 0)
config_file = os.path.join(self.dvc.dvc_dir, Config.CONFIG)
config = configobj.ConfigObj(config_file)
default = config["core"]["remote"]
self.assertEqual(default, remote)
ret = main(["remote", "default", "mys3"])
assert ret == 0
config_file = os.path.join(dvc.dvc_dir, Config.CONFIG)
config = configobj.ConfigObj(config_file)
default = config["core"]["remote"]
assert default == remote
ret = main(["remote", "default", "--unset"])
self.assertEqual(ret, 0)
config = configobj.ConfigObj(config_file)
default = config.get("core", {}).get("remote")
self.assertEqual(default, None)
ret = main(["remote", "default", "--unset"])
assert ret == 0
config = configobj.ConfigObj(config_file)
default = config.get("core", {}).get("remote")
assert default is None
def test_show_default(dvc, capsys):
+84 -2
View File
@@ -220,8 +220,8 @@ def test_unique_identifier(tmp_dir, dvc, scm, run_copy):
# we get "workspace" as well from the brancher by default
assert len(revs) + 1 == len(ids)
possible_ids = {
True: "2ba7c7c5b395d4211348d6274b869fc7",
False: "8406970ad2fcafaa84d9310330a67576",
True: "dd9cf3a3dc2caac5835e64f258ac2d7b",
False: "b446f3cdc35539884dcc474d90ac6286",
}
assert set(ids) == {possible_ids[os.name == "posix"]}
@@ -303,3 +303,85 @@ def test_getitem(tmp_dir, dvc, run_copy):
with pytest.raises(KeyError):
_ = index["no-valid-stage-name"]
def test_view_granular_dir(tmp_dir, scm, dvc, run_copy):
tmp_dir.dvc_gen(
{"dir": {"subdir": {"in-subdir": "in-subdir"}, "in-dir": "in-dir"}},
commit="init",
)
index = Index(dvc)
# view should include the specific target, parent dirs, and children
# view should exclude any siblings of the target
view = index.targets_view("dir/subdir")
data_index = view.data["repo"]
assert ("dir",) in data_index
assert (
"dir",
"subdir",
) in data_index
assert ("dir", "subdir", "in-subdir") in data_index
assert (
"dir",
"in-dir",
) not in data_index
def test_view_stage_filter(tmp_dir, scm, dvc, run_copy):
(stage1,) = tmp_dir.dvc_gen("foo", "foo")
stage2 = run_copy("foo", "bar", name="copy-foo-bar")
tmp_dir.commit([s.outs[0].fspath for s in (stage1, stage2)], msg="add")
index = Index(dvc)
view = index.targets_view(None)
assert set(view.stages) == {stage1, stage2}
assert {out.fs_path for out in view.outs} == {
out.fs_path for out in (stage1.outs + stage2.outs)
}
view = index.targets_view(
None, stage_filter=lambda s: getattr(s, "name", "").startswith("copy")
)
assert set(view.stages) == {stage2}
assert {out.fs_path for out in view.outs} == {
out.fs_path for out in stage2.outs
}
def test_view_outs_filter(tmp_dir, scm, dvc, run_copy):
(stage1,) = tmp_dir.dvc_gen("foo", "foo")
stage2 = run_copy("foo", "bar", name="copy-foo-bar")
tmp_dir.commit([s.outs[0].fspath for s in (stage1, stage2)], msg="add")
index = Index(dvc)
view = index.targets_view(None, outs_filter=lambda o: o.def_path == "foo")
assert set(view.stages) == {stage1, stage2}
assert {out.fs_path for out in view.outs} == {
out.fs_path for out in stage1.outs
}
def test_view_combined_filter(tmp_dir, scm, dvc, run_copy):
(stage1,) = tmp_dir.dvc_gen("foo", "foo")
stage2 = run_copy("foo", "bar", name="copy-foo-bar")
tmp_dir.commit([s.outs[0].fspath for s in (stage1, stage2)], msg="add")
index = Index(dvc)
view = index.targets_view(
None,
stage_filter=lambda s: getattr(s, "name", "").startswith("copy"),
outs_filter=lambda o: o.def_path == "foo",
)
assert set(view.stages) == {stage2}
assert set(view.outs) == set()
view = index.targets_view(
None,
stage_filter=lambda s: getattr(s, "name", "").startswith("copy"),
outs_filter=lambda o: o.def_path == "bar",
)
assert set(view.stages) == {stage2}
assert {out.fs_path for out in view.outs} == {
out.fs_path for out in stage2.outs
}
+731 -740
View File
File diff suppressed because it is too large Load Diff
+14 -156
View File
@@ -9,149 +9,6 @@ from dvc.cli import main
from dvc.dvcfile import PIPELINE_FILE, PIPELINE_LOCK
from dvc.exceptions import CyclicGraphError, ReproductionError
from dvc.stage import PipelineStage
from tests.func import test_repro
from tests.utils.scriptify import scriptify
def copy_script(src, dest):
import shutil
shutil.copyfile(src, dest)
COPY_SCRIPT, _ = scriptify(copy_script)
class MultiStageRun:
def _run(self, **kwargs):
assert kwargs.get("name")
kwargs.pop("fname", None)
# ignore fname for now
return self.dvc.run(**kwargs) # noqa, pylint: disable=no-member
@staticmethod
def _get_stage_target(stage):
return stage.addressing
class TestReproFailMultiStage(MultiStageRun, test_repro.TestReproFail):
pass
class TestReproCyclicGraphMultiStage(
MultiStageRun, test_repro.TestReproCyclicGraph
):
pass
class TestReproUnderDirMultiStage(
MultiStageRun, test_repro.TestReproDepUnderDir
):
pass
class TestReproDepDirWithOutputsUnderItMultiStage(
MultiStageRun, test_repro.TestReproDepDirWithOutputsUnderIt
):
pass
class TestReproForceMultiStage(MultiStageRun, test_repro.TestReproForce):
pass
class TestReproChangedCodeMultiStage(
MultiStageRun, test_repro.TestReproChangedCode
):
pass
class TestReproChangedDataMultiStage(
MultiStageRun, test_repro.TestReproChangedData
):
pass
class TestReproDry(MultiStageRun, test_repro.TestReproDry):
pass
class TestReproUpToDateMultiStage(MultiStageRun, test_repro.TestReproUpToDate):
pass
class TestReproChangedDeepDataMultiStage(
MultiStageRun, test_repro.TestReproChangedDeepData
):
pass
class TestReproPipelineMultiStage(MultiStageRun, test_repro.TestReproPipeline):
pass
class TestReproPipelinesMultiStage(
MultiStageRun, test_repro.TestReproPipelines
):
pass
class TestReproFrozenMultiStage(MultiStageRun, test_repro.TestReproFrozen):
pass
class TestReproFrozenCallbackMultiStage(
MultiStageRun, test_repro.TestReproFrozenCallback
):
pass
class TestReproFrozenUnchangedMultiStage(
MultiStageRun, test_repro.TestReproFrozenUnchanged
):
pass
class TestReproPhonyMultiStage(MultiStageRun, test_repro.TestReproPhony):
pass
class TestCmdReproMultiStage(MultiStageRun, test_repro.TestCmdRepro):
pass
class TestReproAllPipelinesMultiStage(
MultiStageRun, test_repro.TestReproAllPipelines
):
pass
class TestReproNoCommit(MultiStageRun, test_repro.TestReproNoCommit):
pass
class TestNonExistingOutputMultiStage(
MultiStageRun, test_repro.TestNonExistingOutput
):
pass
class TestReproAlreadyCachedMultiStage(
MultiStageRun, test_repro.TestReproAlreadyCached
):
pass
class TestReproChangedDirMultiStage(
MultiStageRun, test_repro.TestReproChangedDir
):
pass
class TestReproChangedDirDataMultiStage(
MultiStageRun, test_repro.TestReproChangedDirData
):
pass
def test_non_existing_stage_name(tmp_dir, dvc, run_copy):
@@ -300,10 +157,11 @@ def test_repro_when_cmd_changes(tmp_dir, dvc, run_copy, mocker):
)
def test_repro_when_new_deps_is_added_in_dvcfile(tmp_dir, dvc, run_copy):
def test_repro_when_new_deps_is_added_in_dvcfile(
tmp_dir, dvc, run_copy, copy_script
):
from dvc.dvcfile import Dvcfile
tmp_dir.gen("copy.py", COPY_SCRIPT)
tmp_dir.gen({"foo": "foo", "bar": "bar"})
stage = dvc.run(
cmd="python copy.py {} {}".format("foo", "foobar"),
@@ -322,10 +180,9 @@ def test_repro_when_new_deps_is_added_in_dvcfile(tmp_dir, dvc, run_copy):
assert dvc.reproduce(target)[0] == stage
def test_repro_when_new_outs_is_added_in_dvcfile(tmp_dir, dvc):
def test_repro_when_new_outs_is_added_in_dvcfile(tmp_dir, dvc, copy_script):
from dvc.dvcfile import Dvcfile
tmp_dir.gen("copy.py", COPY_SCRIPT)
tmp_dir.gen({"foo": "foo", "bar": "bar"})
stage = dvc.run(
cmd="python copy.py {} {}".format("foo", "foobar"),
@@ -344,10 +201,9 @@ def test_repro_when_new_outs_is_added_in_dvcfile(tmp_dir, dvc):
assert dvc.reproduce(target)[0] == stage
def test_repro_when_new_deps_is_moved(tmp_dir, dvc):
def test_repro_when_new_deps_is_moved(tmp_dir, dvc, copy_script):
from dvc.dvcfile import Dvcfile
tmp_dir.gen("copy.py", COPY_SCRIPT)
tmp_dir.gen({"foo": "foo", "bar": "foo"})
stage = dvc.run(
cmd="python copy.py {} {}".format("foo", "foobar"),
@@ -360,7 +216,12 @@ def test_repro_when_new_deps_is_moved(tmp_dir, dvc):
# hardcode values in source code, ignore sys.argv
tmp_dir.gen(
"copy.py", COPY_SCRIPT.replace("func(*argv)", 'func("bar", "foobar")')
"copy.py",
"""
import shutil
shutil.copyfile('bar', 'foobar')
""",
)
from shutil import move
@@ -394,8 +255,7 @@ def test_repro_when_new_out_overlaps_others_stage_outs(tmp_dir, dvc):
dvc.reproduce(":run-copy")
def test_repro_when_new_deps_added_does_not_exist(tmp_dir, dvc):
tmp_dir.gen("copy.py", COPY_SCRIPT)
def test_repro_when_new_deps_added_does_not_exist(tmp_dir, dvc, copy_script):
tmp_dir.gen("foo", "foo")
(tmp_dir / PIPELINE_FILE).dump(
{
@@ -412,8 +272,7 @@ def test_repro_when_new_deps_added_does_not_exist(tmp_dir, dvc):
dvc.reproduce(":run-copy")
def test_repro_when_new_outs_added_does_not_exist(tmp_dir, dvc):
tmp_dir.gen("copy.py", COPY_SCRIPT)
def test_repro_when_new_outs_added_does_not_exist(tmp_dir, dvc, copy_script):
tmp_dir.gen("foo", "foo")
(tmp_dir / PIPELINE_FILE).dump(
{
@@ -430,8 +289,7 @@ def test_repro_when_new_outs_added_does_not_exist(tmp_dir, dvc):
dvc.reproduce(":run-copy")
def test_repro_when_lockfile_gets_deleted(tmp_dir, dvc):
tmp_dir.gen("copy.py", COPY_SCRIPT)
def test_repro_when_lockfile_gets_deleted(tmp_dir, dvc, copy_script):
tmp_dir.gen("foo", "foo")
(tmp_dir / PIPELINE_FILE).dump(
{
File diff suppressed because it is too large Load Diff
+53 -72
View File
@@ -1,10 +1,8 @@
import os
import tempfile
import pytest
from dvc.annotations import Annotation
from dvc.cli import main
from dvc.dvcfile import SingleStageFile
from dvc.fs import LocalFileSystem
from dvc.output import Output
@@ -15,7 +13,6 @@ from dvc.stage.utils import compute_md5
from dvc.utils import dict_md5
from dvc.utils.serialize import dump_yaml, load_yaml
from dvc.utils.strictyaml import YAMLValidationError
from tests.basic_env import TestDvc
def test_cmd_obj():
@@ -71,90 +68,74 @@ def test_list():
SingleStageFile.validate(d)
class TestReload(TestDvc):
def test(self):
stages = self.dvc.add(self.FOO)
self.assertEqual(len(stages), 1)
stage = stages[0]
self.assertTrue(stage is not None)
def test_reload(tmp_dir, dvc):
(stage,) = tmp_dir.dvc_gen("foo", "foo")
d = load_yaml(stage.relpath)
d = load_yaml(stage.relpath)
# NOTE: checking that reloaded stage didn't change its checksum
md5 = "11111111111111111111111111111111"
d[stage.PARAM_MD5] = md5
dump_yaml(stage.relpath, d)
# NOTE: checking that reloaded stage didn't change its checksum
md5 = "11111111111111111111111111111111"
d[stage.PARAM_MD5] = md5
dump_yaml(stage.relpath, d)
dvcfile = SingleStageFile(dvc, stage.relpath)
stage = dvcfile.stage
dvcfile = SingleStageFile(self.dvc, stage.relpath)
stage = dvcfile.stage
assert stage is not None
dvcfile.dump(stage)
self.assertTrue(stage is not None)
dvcfile.dump(stage)
d = load_yaml(stage.relpath)
self.assertEqual(d[stage.PARAM_MD5], md5)
d = load_yaml(stage.relpath)
assert d[stage.PARAM_MD5] == md5
class TestDefaultWorkingDirectory(TestDvc):
def test_ignored_in_checksum(self):
stage = self.dvc.run(
cmd=f"echo test > {self.FOO}",
deps=[self.BAR],
outs=[self.FOO],
single_stage=True,
)
def test_default_wdir_ignored_in_checksum(tmp_dir, dvc):
tmp_dir.gen("bar", "bar")
stage = dvc.run(
cmd="cp bar foo",
deps=["bar"],
outs=["foo"],
single_stage=True,
)
d = stage.dumpd()
self.assertNotIn(Stage.PARAM_WDIR, d.keys())
d = stage.dumpd()
assert Stage.PARAM_WDIR not in d.keys()
d = load_yaml(stage.relpath)
self.assertNotIn(Stage.PARAM_WDIR, d.keys())
d = load_yaml(stage.relpath)
assert Stage.PARAM_WDIR not in d.keys()
with self.dvc.lock:
stage = SingleStageFile(self.dvc, stage.relpath).stage
self.assertFalse(stage.changed())
with dvc.lock:
stage = SingleStageFile(dvc, stage.relpath).stage
assert not stage.changed()
class TestExternalRemoteResolution(TestDvc):
def test_remote_output(self):
tmp_path = tempfile.mkdtemp()
storage = os.path.join(tmp_path, "storage")
file_path = os.path.join(storage, "file")
def test_external_remote_output_resolution(tmp_dir, dvc, make_remote):
tmp_path = make_remote("tmp", default=False)
tmp_dir.add_remote(
url="remote://tmp/storage", name="storage", default=False
)
storage = tmp_path / "storage"
storage.mkdir()
file_path = storage / "file"
os.makedirs(storage)
dvc.run(
cmd=f"echo file > {file_path}",
outs_no_cache=["remote://storage/file"],
single_stage=True,
)
assert os.path.exists(file_path)
assert main(["remote", "add", "tmp", tmp_path]) == 0
assert main(["remote", "add", "storage", "remote://tmp/storage"]) == 0
assert (
main(
[
"run",
"--single-stage",
"-O",
"remote://storage/file",
f"echo file > {file_path}",
]
)
== 0
)
assert os.path.exists(file_path)
def test_external_remote_dependency_resolution(tmp_dir, dvc, make_remote):
tmp_path = make_remote("tmp", default=False)
tmp_dir.add_remote(
url="remote://tmp/storage", name="storage", default=False
)
storage = tmp_path / "storage"
storage.mkdir()
file_path = storage / "file"
file_path.write_text("Isle of Dogs", encoding="utf-8")
def test_remote_dependency(self):
tmp_path = tempfile.mkdtemp()
storage = os.path.join(tmp_path, "storage")
file_path = os.path.join(storage, "file")
os.makedirs(storage)
with open(file_path, "w", encoding="utf-8") as fobj:
fobj.write("Isle of Dogs")
assert main(["remote", "add", "tmp", tmp_path]) == 0
assert main(["remote", "add", "storage", "remote://tmp/storage"]) == 0
assert main(["import-url", "remote://storage/file", "movie.txt"]) == 0
assert os.path.exists("movie.txt")
dvc.imp_url("remote://storage/file", "movie.txt")
assert (tmp_dir / "movie.txt").read_text() == "Isle of Dogs"
def test_md5_ignores_comments(tmp_dir, dvc):
+20 -30
View File
@@ -1,37 +1,27 @@
import os
from dvc.cli import main
from tests.basic_env import TestDvc
def test_unprotect(tmp_dir, dvc):
tmp_dir.gen("foo", "foo")
class TestUnprotect(TestDvc):
def test(self):
ret = main(["config", "cache.type", "hardlink"])
self.assertEqual(ret, 0)
dvc.odb.local.cache_types = ["hardlink"]
dvc.add("foo")
cache = os.path.join(
".dvc", "cache", "ac", "bd18db4cc2f85cedef654fccc4a4d8"
)
assert not os.access("foo", os.W_OK)
assert not os.access(cache, os.W_OK)
ret = main(["add", self.FOO])
self.assertEqual(ret, 0)
dvc.unprotect("foo")
assert os.access("foo", os.W_OK)
cache = os.path.join(
".dvc", "cache", "ac", "bd18db4cc2f85cedef654fccc4a4d8"
)
if os.name == "nt":
# NOTE: cache is now unprotected, because NTFS doesn't allow
# deleting read-only files, so we have to try to set write perms
# on files that we try to delete, which propagates to the cache
# file. But it should be restored after the next cache check, hence
# why we call `dvc status` here.
assert os.access(cache, os.W_OK)
dvc.status()
self.assertFalse(os.access(self.FOO, os.W_OK))
self.assertFalse(os.access(cache, os.W_OK))
ret = main(["unprotect", self.FOO])
self.assertEqual(ret, 0)
self.assertTrue(os.access(self.FOO, os.W_OK))
if os.name == "nt":
# NOTE: cache is now unprotected, because NTFS doesn't allow
# deleting read-only files, so we have to try to set write perms
# on files that we try to delete, which propagates to the cache
# file. But it should be restored after the next cache check, hence
# why we call `dvc status` here.
self.assertTrue(os.access(cache, os.W_OK))
ret = main(["status"])
self.assertEqual(ret, 0)
self.assertFalse(os.access(cache, os.W_OK))
assert not os.access(cache, os.W_OK)
+13
View File
@@ -51,3 +51,16 @@ def test_from_gitfs_when_pwd_not_in_root(
with wdir.chdir():
assert dvc.used_objs([target], revs=[scm.get_rev()])
def test_used_objs_push(tmp_dir, scm, dvc):
stage = tmp_dir.dvc_gen("foo", "foo")[0]
hash_info = stage.outs[0].hash_info
stage.outs[0].can_push = True
assert stage.get_used_objs(push=False) == {None: {hash_info}}
assert stage.get_used_objs(push=True) == {None: {hash_info}}
stage.outs[0].can_push = False
assert stage.get_used_objs(push=False) == {None: {hash_info}}
assert stage.get_used_objs(push=True) == {}
+1 -1
View File
@@ -16,7 +16,7 @@ def test_(tmp_dir, dvc, scm, capsys):
assert re.search(rf"DVC version: {DVC_VERSION_REGEX}", out)
assert re.search(f"Platform: {PYTHON_VERSION_REGEX} on .*", out)
for subproject in SUBPROJECTS:
assert re.search(rf"{subproject} = {DVC_VERSION_REGEX}", out)
assert re.search(rf"{subproject} = .*", out)
assert find_supported_remotes(out)
assert re.search(r"Cache types: .*", out)
+14 -1
View File
@@ -174,12 +174,25 @@ def test_compose_and_dump(tmp_dir, suffix, overrides, expected):
from dvc.utils.hydra import compose_and_dump
config_name = "config"
config_dir = hydra_setup(tmp_dir, "conf", "config")
output_file = tmp_dir / f"params.{suffix}"
config_dir = hydra_setup(tmp_dir, "conf", "config")
compose_and_dump(output_file, config_dir, config_name, overrides)
assert output_file.parse() == expected
@pytest.mark.skipif(sys.version_info >= (3, 11), reason="unsupported on 3.11")
def test_compose_and_dump_yaml_handles_string(tmp_dir):
"""Regression test for 8583"""
from dvc.utils.hydra import compose_and_dump
config = tmp_dir / "conf" / "config.yaml"
config.parent.mkdir()
config.write_text("foo: 'no'\n")
output_file = tmp_dir / "params.yaml"
compose_and_dump(output_file, str(config.parent), "config", [])
assert output_file.read_text() == "foo: 'no'\n"
@pytest.mark.parametrize(
"overrides, expected",
[
+4 -3
View File
@@ -456,9 +456,7 @@ def test_repo_with_config_plots(tmp_dir, capsys, repo_with_config_plots):
"dvc.yaml::confusion_train_vs_test",
],
)
assert html_result["dvc.yaml::linear_train_vs_test"]["data"][
"values"
] == _update_datapoints(
ble = _update_datapoints(
plots["data"]["linear_train.json"],
{
REVISION_FIELD: "linear_train.json",
@@ -470,4 +468,7 @@ def test_repo_with_config_plots(tmp_dir, capsys, repo_with_config_plots):
},
)
assert (
html_result["dvc.yaml::linear_train_vs_test"]["data"]["values"] == ble
)
# TODO check json results once vscode is able to handle flexible plots
+59
View File
@@ -0,0 +1,59 @@
import pytest
COPY_SCRIPT = """
import os
import shutil
import sys
if os.path.isfile(sys.argv[1]):
shutil.copyfile(sys.argv[1], sys.argv[2])
else:
shutil.copytree(sys.argv[1], sys.argv[2])
"""
def _add_script(tmp_dir, path, contents=""):
script, *_ = tmp_dir.gen(path, contents)
if hasattr(tmp_dir, "scm"):
tmp_dir.scm_add(path, commit=f"add {path}")
return script.fs_path
@pytest.fixture
def append_foo_script(tmp_dir):
return _add_script(
tmp_dir,
"append_foo.py",
"""
import sys
from pathlib import Path
with Path(sys.argv[1]).open("a+", encoding="utf-8") as f:
f.write("foo")
""",
)
@pytest.fixture
def copy_script(
tmp_dir,
):
return _add_script(tmp_dir, "copy.py", COPY_SCRIPT)
@pytest.fixture
def head_script(tmp_dir):
"""Output first line of each file to different file with '-1' appended.
Useful for tracking multiple outputs/dependencies which are not a copy
of each others.
"""
return _add_script(
tmp_dir,
"head.py",
"""
import sys
for file in sys.argv[1:]:
with open(file) as f, open(file +"-1","w+") as w:
w.write(f.readline())
""",
)
+8 -8
View File
@@ -39,7 +39,7 @@ def test_default(mocker, capsys):
}
mocker.patch("dvc.repo.Repo.diff", return_value=diff)
assert 0 == cmd.run()
assert cmd.run() == 0
assert (
"Added:\n"
" file\n"
@@ -77,7 +77,7 @@ def test_show_hash(mocker, capsys):
"not in cache": [],
}
mocker.patch("dvc.repo.Repo.diff", return_value=diff)
assert 0 == cmd.run()
assert cmd.run() == 0
out, _ = capsys.readouterr()
assert (
@@ -115,7 +115,7 @@ def test_show_json(mocker, capsys):
}
mocker.patch("dvc.repo.Repo.diff", return_value=diff)
assert 0 == cmd.run()
assert cmd.run() == 0
out, _ = capsys.readouterr()
assert '"added": [{"path": "file1"}, {"path": "file2"}]' in out
assert '"deleted": []' in out
@@ -145,7 +145,7 @@ def test_show_json_and_hash(mocker, capsys):
}
mocker.patch("dvc.repo.Repo.diff", return_value=diff)
assert 0 == cmd.run()
assert cmd.run() == 0
out, _ = capsys.readouterr()
assert (
'"added": [{"path": "file1", "hash": "11111111"}, '
@@ -180,7 +180,7 @@ def test_show_json_hide_missing(mocker, capsys):
}
mocker.patch("dvc.repo.Repo.diff", return_value=diff)
assert 0 == cmd.run()
assert cmd.run() == 0
out, _ = capsys.readouterr()
assert '"added": [{"path": "file1"}, {"path": "file2"}]' in out
assert '"deleted": []' in out
@@ -200,7 +200,7 @@ def test_diff_show_markdown_and_hash(mocker, show_hash):
mock_show_markdown = mocker.patch("dvc.commands.diff._show_markdown")
mocker.patch("dvc.repo.Repo.diff", return_value=diff.copy())
assert 0 == cmd.run()
assert cmd.run() == 0
mock_show_markdown.assert_called_once_with(diff, show_hash, False)
@@ -226,7 +226,7 @@ def test_no_changes(mocker, capsys, opts, show, expected):
cmd = args.func(args)
mocker.patch("dvc.repo.Repo.diff", return_value={})
assert 0 == cmd.run()
assert cmd.run() == 0
out, _ = capsys.readouterr()
assert expected == out.strip()
@@ -349,7 +349,7 @@ def test_hide_missing(mocker, capsys):
}
mocker.patch("dvc.repo.Repo.diff", return_value=diff)
assert 0 == cmd.run()
assert cmd.run() == 0
out, _ = capsys.readouterr()
assert (
"Added:\n"
+1 -1
View File
@@ -178,7 +178,7 @@ def test_plots_diff_open(tmp_dir, dvc, mocker, capsys, plots_data, auto_open):
def test_plots_diff_open_WSL(tmp_dir, dvc, mocker, plots_data):
mocked_open = mocker.patch("webbrowser.open", return_value=True)
mocked_uname_result = mocker.MagicMock()
mocked_uname_result.release = "Microsoft"
mocked_uname_result.release = "microsoft"
mocker.patch("platform.uname", return_value=mocked_uname_result)
cli_args = parse_args(
-18
View File
@@ -23,12 +23,6 @@ def test_run(mocker, dvc):
"plots",
"--plots-no-cache",
"plots-no-cache",
"--live",
"live",
"--live-no-cache",
"live-no-cache",
"--live-no-summary",
"--live-no-html",
"--file",
"file",
"--wdir",
@@ -74,10 +68,6 @@ def test_run(mocker, dvc):
outs_persist_no_cache=["outs-persist-no-cache"],
checkpoints=["checkpoints"],
params=["file:param1,param2", "param3"],
live="live",
live_no_cache="live-no-cache",
live_no_summary=True,
live_no_html=True,
fname="file",
wdir="wdir",
no_exec=True,
@@ -107,10 +97,6 @@ def test_run_args_from_cli(mocker, dvc):
metrics_no_cache=[],
plots=[],
plots_no_cache=[],
live=None,
live_no_cache=None,
live_no_summary=False,
live_no_html=False,
outs_persist=[],
outs_persist_no_cache=[],
checkpoints=[],
@@ -144,10 +130,6 @@ def test_run_args_with_spaces(mocker, dvc):
metrics_no_cache=[],
plots=[],
plots_no_cache=[],
live=None,
live_no_cache=None,
live_no_summary=False,
live_no_html=False,
outs_persist=[],
outs_persist_no_cache=[],
checkpoints=[],
-7
View File
@@ -35,10 +35,6 @@ def test_stage_add(mocker, dvc, command, parsed_command):
"plots",
"--plots-no-cache",
"plots-no-cache",
"--live",
"live",
"--live-no-summary",
"--live-no-html",
"--wdir",
"wdir",
"--force",
@@ -80,9 +76,6 @@ def test_stage_add(mocker, dvc, command, parsed_command):
metrics_no_cache=["metrics-no-cache"],
plots=["plots"],
plots_no_cache=["plots-no-cache"],
live="live",
live_no_summary=True,
live_no_html=True,
wdir="wdir",
outs_persist=["outs-persist"],
outs_persist_no_cache=["outs-persist-no-cache"],
+3 -3
View File
@@ -7,6 +7,6 @@ from dvc.stage import Stage
def test_save_missing(dvc, mocker):
stage = Stage(dvc)
dep = Dependency(stage, "path")
with mocker.patch.object(dep.fs, "exists", return_value=False):
with pytest.raises(dep.DoesNotExistError):
dep.save()
mocker.patch.object(dep.fs, "exists", return_value=False)
with pytest.raises(dep.DoesNotExistError):
dep.save()
+15 -20
View File
@@ -1,12 +1,10 @@
import os
from unittest.mock import patch
from dvc.output import Output
from dvc.stage import Stage
from dvc.utils import relpath
from dvc_data.hashfile.hash_info import HashInfo
from dvc_data.hashfile.meta import Meta
from tests.basic_env import TestDvc
def test_str_workdir_outside_repo(tmp_dir, erepo_dir):
@@ -52,24 +50,21 @@ def test_str_on_external_absolute_path(dvc):
assert str(output) == abs_path
class TestGetFilesNumber(TestDvc):
def _get_output(self):
stage = Stage(self.dvc)
return Output(stage, "path")
def test_return_0_on_no_cache(dvc):
o = Output(Stage(dvc), "path")
o.use_cache = False
assert o.get_files_number() == 0
def test_return_0_on_no_cache(self):
o = self._get_output()
o.use_cache = False
self.assertEqual(0, o.get_files_number())
def test_return_multiple_for_dir(self):
o = self._get_output()
o.hash_info = HashInfo("md5", "12345678.dir")
o.meta = Meta(nfiles=2)
self.assertEqual(2, o.get_files_number())
def test_return_multiple_for_dir(dvc):
o = Output(Stage(dvc), "path")
o.hash_info = HashInfo("md5", "12345678.dir")
o.meta = Meta(nfiles=2)
assert o.get_files_number() == 2
@patch.object(Output, "is_dir_checksum", False)
def test_return_1_on_single_file_cache(self):
o = self._get_output()
o.hash_info = HashInfo("md5", "12345678")
self.assertEqual(1, o.get_files_number())
def test_return_1_on_single_file_cache(mocker, dvc):
mocker.patch.object(Output, "is_dir_checksum", False)
o = Output(Stage(dvc), "path")
o.hash_info = HashInfo("md5", "12345678")
assert o.get_files_number() == 1
+7 -7
View File
@@ -15,9 +15,9 @@ from dvc.utils.fs import remove
def test_save_missing(dvc, mocker):
stage = Stage(dvc)
out = Output(stage, "path", cache=False)
with mocker.patch.object(out.fs, "exists", return_value=False):
with pytest.raises(out.DoesNotExistError):
out.save()
mocker.patch.object(out.fs, "exists", return_value=False)
with pytest.raises(out.DoesNotExistError):
out.save()
@pytest.mark.parametrize(
@@ -115,9 +115,9 @@ def test_remote_missing_dependency_on_dir_pull(tmp_dir, scm, dvc, mocker):
remove("dir")
remove(dvc.odb.local.path)
with mocker.patch(
mocker.patch(
"dvc.data_cloud.DataCloud.get_remote_odb",
side_effect=RemoteMissingDepsError(dvc.fs, "azure", "azure://", []),
):
with pytest.raises(RemoteMissingDepsError):
dvc.pull()
)
with pytest.raises(RemoteMissingDepsError):
dvc.pull()

Some files were not shown because too many files have changed in this diff Show More