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8e675a9d42 |
@@ -1,5 +0,0 @@
|
||||
languages:
|
||||
Python: true
|
||||
|
||||
exclude_paths:
|
||||
- tests/
|
||||
+10
-1
@@ -1 +1,10 @@
|
||||
|
||||
comment: false
|
||||
coverage:
|
||||
status:
|
||||
project:
|
||||
default:
|
||||
target: 85
|
||||
threshold: 10%
|
||||
patch:
|
||||
default:
|
||||
threshold: 25%
|
||||
|
||||
@@ -1,10 +1,14 @@
|
||||
[run]
|
||||
branch = True
|
||||
source = dvc
|
||||
omit =
|
||||
*__main__.py
|
||||
|
||||
[report]
|
||||
exclude_lines =
|
||||
if __name__ == .__main__.:
|
||||
if typing.TYPE_CHECKING:
|
||||
if TYPE_CHECKING:
|
||||
pass
|
||||
raise NotImplementedError
|
||||
# pragma: no cover
|
||||
|
||||
@@ -1,15 +0,0 @@
|
||||
version = 1
|
||||
|
||||
test_patterns = [
|
||||
'tests/**'
|
||||
]
|
||||
|
||||
exclude_patterns = [
|
||||
'dvc/utils/compat.py'
|
||||
]
|
||||
|
||||
[[analyzers]]
|
||||
name = 'python'
|
||||
enabled = true
|
||||
runtime_version = '3.x.x'
|
||||
|
||||
@@ -9,3 +9,4 @@
|
||||
/pkg
|
||||
/repos
|
||||
/tmp
|
||||
/experiments
|
||||
|
||||
@@ -1,7 +0,0 @@
|
||||
[flake8]
|
||||
ignore =
|
||||
E203, # Whitespace before ':'
|
||||
E266, # Too many leading '#' for block comment
|
||||
W503, # Line break occurred before a binary operator
|
||||
max-line-length = 79
|
||||
select = B,C,E,F,W,T4,B9
|
||||
@@ -0,0 +1,3 @@
|
||||
# These are supported funding model platforms
|
||||
|
||||
patreon: DVCorg
|
||||
@@ -1,10 +1,18 @@
|
||||
---
|
||||
name: Bug report
|
||||
about: Create a report to help us improve
|
||||
|
||||
name: "\U0001F41B Bug Report"
|
||||
about: Create a bug report to help us improve DVC
|
||||
---
|
||||
|
||||
## Bug Report
|
||||
|
||||
**Please provide information about your setup**
|
||||
DVC version(i.e. `dvc --version`), Platform and method of installation (pip, homebrew, pkg Mac, exe (Windows), DEB(Linux), RPM(Linux))
|
||||
### Please provide information about your setup
|
||||
|
||||
**Output of `dvc version`:**
|
||||
|
||||
```console
|
||||
$ dvc version
|
||||
```
|
||||
|
||||
**Additional Information (if any):**
|
||||
|
||||
If applicable, please also provide a `--verbose` output of the command, eg: `dvc add --verbose`.
|
||||
|
||||
@@ -0,0 +1,5 @@
|
||||
blank_issues_enabled: false
|
||||
contact_links:
|
||||
- name: "🤗 Need help?"
|
||||
url: https://dvc.org/chat
|
||||
about: If you have a question, ask us on Discord. Please join with this invite 👉
|
||||
@@ -1,6 +1,5 @@
|
||||
---
|
||||
name: Feature request
|
||||
name: "\U0001F680 Feature Request"
|
||||
about: Suggest an idea for this project
|
||||
|
||||
---
|
||||
|
||||
|
||||
@@ -1,7 +1,5 @@
|
||||
* [ ] ❗ I have followed the [Contributing to DVC](https://dvc.org/doc/user-guide/contributing/core) checklist.
|
||||
|
||||
* [ ] 📖 If this PR requires [documentation](https://dvc.org/doc) updates, I have created a separate PR (or issue, at least) in [dvc.org](https://github.com/iterative/dvc.org) and linked it here. If the CLI API is changed, I have updated [tab completion scripts](https://github.com/iterative/dvc/tree/master/scripts/completion).
|
||||
|
||||
* [ ] ❌ I will check DeepSource, CodeClimate, and other sanity checks below. (We consider them recommendatory and don't expect everything to be addressed. Please fix things that actually improve code or fix bugs.)
|
||||
* [ ] 📖 If this PR requires [documentation](https://dvc.org/doc) updates, I have created a separate PR (or issue, at least) in [dvc.org](https://github.com/iterative/dvc.org) and linked it here.
|
||||
|
||||
Thank you for the contribution - we'll try to review it as soon as possible. 🙏
|
||||
|
||||
@@ -1,5 +1,49 @@
|
||||
# Config for https://github.com/apps/release-drafter
|
||||
branches:
|
||||
- master
|
||||
name-template: "$RESOLVED_VERSION 🦉 "
|
||||
tag-template: "$RESOLVED_VERSION"
|
||||
categories:
|
||||
- title: "🚀 New Features and Enhancements "
|
||||
labels:
|
||||
- "feature"
|
||||
- "enhancement"
|
||||
- "ui"
|
||||
- title: "💣 Breaking Changes "
|
||||
labels:
|
||||
- "breaking-change"
|
||||
- title: "🏇 Optimizations "
|
||||
labels:
|
||||
- "optimize"
|
||||
- "performance"
|
||||
- title: "🐛 Bug Fixes "
|
||||
labels:
|
||||
- "bugfix"
|
||||
- "bug"
|
||||
- title: "🔨 Maintenance "
|
||||
labels:
|
||||
- "maintenance"
|
||||
- "refactoring"
|
||||
- "chore"
|
||||
- "build"
|
||||
- "ci"
|
||||
change-template: "- $TITLE (#$NUMBER) @$AUTHOR"
|
||||
version-resolver:
|
||||
major:
|
||||
labels:
|
||||
- "major"
|
||||
minor:
|
||||
labels:
|
||||
- "minor"
|
||||
patch:
|
||||
labels:
|
||||
- "patch"
|
||||
default: patch
|
||||
exclude-labels:
|
||||
- "skip-changelog"
|
||||
template: |
|
||||
> Refer to https://dvc.org/doc/install for installation instructions.
|
||||
|
||||
## Changes
|
||||
|
||||
$CHANGES
|
||||
|
||||
Thanks again to $CONTRIBUTORS for the contributions! 🎉
|
||||
|
||||
@@ -0,0 +1,136 @@
|
||||
name: Build packages
|
||||
on:
|
||||
push: {}
|
||||
release:
|
||||
types: [released]
|
||||
jobs:
|
||||
linux:
|
||||
runs-on: ubuntu-16.04
|
||||
steps:
|
||||
- uses: actions/[email protected]
|
||||
- name: Set up Python 3.7
|
||||
uses: actions/[email protected]
|
||||
with:
|
||||
python-version: 3.7
|
||||
- name: Set up Ruby 2.4
|
||||
uses: actions/setup-ruby@v1
|
||||
with:
|
||||
ruby-version: 2.4
|
||||
- name: Build
|
||||
run: ./scripts/build_posix.sh
|
||||
- name: Publish deb
|
||||
if: github.event_name == 'release'
|
||||
uses: actions/[email protected]
|
||||
env:
|
||||
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
|
||||
with:
|
||||
upload_url: ${{ github.event.release.upload_url }}
|
||||
asset_path: dvc_${{ github.event.release.tag_name }}_amd64.deb
|
||||
asset_name: dvc_${{ github.event.release.tag_name }}_amd64.deb
|
||||
asset_content_type: binary/octet-stream
|
||||
- name: Publish rpm
|
||||
if: github.event_name == 'release'
|
||||
uses: actions/[email protected]
|
||||
env:
|
||||
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
|
||||
with:
|
||||
upload_url: ${{ github.event.release.upload_url }}
|
||||
asset_path: dvc-${{ github.event.release.tag_name }}-1.x86_64.rpm
|
||||
asset_name: dvc-${{ github.event.release.tag_name }}-1.x86_64.rpm
|
||||
asset_content_type: binary/octet-stream
|
||||
mac:
|
||||
runs-on: macos-10.15
|
||||
steps:
|
||||
- uses: actions/[email protected]
|
||||
- name: Set up Python 3.7
|
||||
uses: actions/[email protected]
|
||||
with:
|
||||
python-version: 3.7
|
||||
- name: Set up Ruby 2.4
|
||||
uses: actions/setup-ruby@v1
|
||||
with:
|
||||
ruby-version: 2.4
|
||||
- name: Build
|
||||
run: ./scripts/build_posix.sh
|
||||
- name: Publish
|
||||
if: github.event_name == 'release'
|
||||
uses: actions/[email protected]
|
||||
env:
|
||||
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
|
||||
with:
|
||||
upload_url: ${{ github.event.release.upload_url }}
|
||||
asset_path: dvc-${{ github.event.release.tag_name }}.pkg
|
||||
asset_name: dvc-${{ github.event.release.tag_name }}.pkg
|
||||
asset_content_type: binary/octet-stream
|
||||
windows:
|
||||
runs-on: windows-2019
|
||||
steps:
|
||||
- uses: actions/[email protected]
|
||||
- name: Set up Python 3.7
|
||||
uses: actions/[email protected]
|
||||
with:
|
||||
python-version: 3.7
|
||||
- name: Build
|
||||
run: scripts\build_windows.cmd
|
||||
shell: cmd
|
||||
- name: Publish
|
||||
if: github.event_name == 'release'
|
||||
env:
|
||||
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
|
||||
uses: actions/[email protected]
|
||||
with:
|
||||
upload_url: ${{ github.event.release.upload_url }}
|
||||
asset_path: dvc-${{ github.event.release.tag_name }}.exe
|
||||
asset_name: dvc-${{ github.event.release.tag_name }}.exe
|
||||
asset_content_type: binary/octet-stream
|
||||
python:
|
||||
runs-on: ubuntu-16.04
|
||||
steps:
|
||||
- uses: actions/[email protected]
|
||||
- name: Set up Python 3.7
|
||||
uses: actions/[email protected]
|
||||
with:
|
||||
python-version: 3.7
|
||||
- name: Install
|
||||
run: pip install ".[all,tests]"
|
||||
- name: Build packages
|
||||
run: ./scripts/build_package.sh
|
||||
- name: Publish packages to PyPI
|
||||
if: github.event_name == 'release'
|
||||
uses: pypa/gh-action-pypi-publish@master
|
||||
with:
|
||||
user: __token__
|
||||
password: ${{ secrets.PYPI_TOKEN }}
|
||||
snap:
|
||||
runs-on: ubuntu-latest
|
||||
steps:
|
||||
- uses: actions/[email protected]
|
||||
- name: Build the package
|
||||
uses: snapcore/action-build@v1
|
||||
id: snapcraft
|
||||
- name: Test the package
|
||||
run: |
|
||||
sudo snap install --dangerous --classic ${{ steps.snapcraft.outputs.snap }}
|
||||
dvc version
|
||||
sudo snap remove dvc
|
||||
- name: Publish to the edge channel
|
||||
uses: snapcore/action-publish@v1
|
||||
if: github.event_name == 'push'
|
||||
with:
|
||||
store_login: ${{ secrets.STORE_LOGIN }}
|
||||
snap: ${{ steps.snapcraft.outputs.snap }}
|
||||
release: edge
|
||||
- name: Publish to the stable channel
|
||||
uses: snapcore/action-publish@v1
|
||||
if: github.event_name == 'release'
|
||||
with:
|
||||
store_login: ${{ secrets.STORE_LOGIN }}
|
||||
snap: ${{ steps.snapcraft.outputs.snap }}
|
||||
release: stable
|
||||
- name: Publish to the v1 channel
|
||||
uses: snapcore/action-publish@v1
|
||||
if: github.event_name == 'release'
|
||||
with:
|
||||
store_login: ${{ secrets.STORE_LOGIN }}
|
||||
snap: ${{ steps.snapcraft.outputs.snap }}
|
||||
release: v1
|
||||
@@ -0,0 +1,86 @@
|
||||
name: Tests
|
||||
|
||||
on:
|
||||
pull_request:
|
||||
branches:
|
||||
- master
|
||||
push:
|
||||
branches:
|
||||
- master
|
||||
|
||||
env:
|
||||
DVC_TEST: "true"
|
||||
HOMEBREW_NO_AUTO_UPDATE: 1
|
||||
SHELL: /bin/bash
|
||||
GDRIVE_CREDENTIALS_DATA: ${{ secrets.GDRIVE_CREDENTIALS_DATA }}
|
||||
AWS_ACCESS_KEY_ID: ${{ secrets.AWS_ACCESS_KEY_ID }}
|
||||
AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_SECRET_ACCESS_KEY }}
|
||||
GS_CREDS_JSON: ${{ secrets.GS_CREDS_JSON }}
|
||||
|
||||
jobs:
|
||||
lint:
|
||||
runs-on: ubuntu-latest
|
||||
steps:
|
||||
- uses: actions/[email protected]
|
||||
- name: Set up Python 3.8
|
||||
uses: actions/[email protected]
|
||||
with:
|
||||
python-version: 3.8
|
||||
- name: Install requirements
|
||||
run: pip install ".[all,tests]" Pygments collective.checkdocs pre-commit
|
||||
- name: Check README
|
||||
run: python setup.py checkdocs
|
||||
- name: Check formatting
|
||||
run: pre-commit run --all-files
|
||||
tests:
|
||||
runs-on: ${{ matrix.os }}
|
||||
strategy:
|
||||
fail-fast: false
|
||||
matrix:
|
||||
os: [ubuntu-18.04, windows-2019, macos-10.15]
|
||||
pyv: ["3.6", "3.7", "3.8", "3.9"]
|
||||
include:
|
||||
- os: "macos-11.0"
|
||||
pyv: "3.9"
|
||||
exclude:
|
||||
- os: macos-10.15
|
||||
pyv: "3.9"
|
||||
|
||||
steps:
|
||||
- uses: actions/[email protected]
|
||||
- name: Set up Python
|
||||
uses: actions/[email protected]
|
||||
with:
|
||||
python-version: ${{ matrix.pyv }}
|
||||
- name: install
|
||||
run: |
|
||||
pip install wheel
|
||||
pip install -e ".[all,tests]"
|
||||
- name: setup git
|
||||
run: |
|
||||
git config --global user.email "[email protected]"
|
||||
git config --global user.name "DVC Tester"
|
||||
- name: setup gs creds
|
||||
shell: bash
|
||||
if: env.GS_CREDS_JSON != ''
|
||||
run: |
|
||||
mkdir -p scripts/ci
|
||||
echo "$GS_CREDS_JSON" > scripts/ci/gcp-creds.json
|
||||
- name: run tests
|
||||
run: python -m tests --all --cov-report=xml --cov-report=term --tap-combined
|
||||
- name: upload coverage report
|
||||
uses: codecov/[email protected]
|
||||
with:
|
||||
file: ./coverage.xml
|
||||
fail_ci_if_error: false
|
||||
- name: Post TAP
|
||||
# Running custom fork with an option, that does not fail CI on error
|
||||
uses: skshetry/flaky-service/packages/action@master
|
||||
if: always() && github.ref == 'refs/heads/master'
|
||||
with:
|
||||
file-path: ${{github.workspace}}/testresults.tap
|
||||
repo-token: ${{ secrets.GITHUB_TOKEN }}
|
||||
os: ${{runner.os}}
|
||||
matrix: ${{toJson(matrix)}}
|
||||
repo-description: ${{github.event.repository.description}}
|
||||
fail_ci_if_error: false
|
||||
+2
-2
@@ -1,12 +1,12 @@
|
||||
neatlynx.conf
|
||||
neatlynx/__pycache__
|
||||
.idea
|
||||
cache
|
||||
/cache
|
||||
*.pyc
|
||||
.env/
|
||||
.env2.7/
|
||||
.python-version
|
||||
|
||||
cache
|
||||
.dvc.conf.lock
|
||||
.DS_Store
|
||||
build/
|
||||
|
||||
+70
-34
@@ -1,35 +1,71 @@
|
||||
repos:
|
||||
- hooks:
|
||||
- id: black
|
||||
language_version: python3
|
||||
repo: https://github.com/ambv/black
|
||||
rev: 19.10b0
|
||||
- hooks:
|
||||
- id: flake8
|
||||
language_version: python3
|
||||
repo: https://gitlab.com/pycqa/flake8
|
||||
rev: master
|
||||
- hooks:
|
||||
- args:
|
||||
- -i
|
||||
- '2'
|
||||
id: beautysh
|
||||
language_version: python3
|
||||
repo: https://github.com/lovesegfault/beautysh
|
||||
rev: master
|
||||
- hooks:
|
||||
- id: dvc-pre-commit
|
||||
language_version: python3
|
||||
stages:
|
||||
- commit
|
||||
- id: dvc-pre-push
|
||||
language_version: python3
|
||||
stages:
|
||||
- push
|
||||
- always_run: true
|
||||
id: dvc-post-checkout
|
||||
language_version: python3
|
||||
stages:
|
||||
- post-checkout
|
||||
repo: https://github.com/iterative/dvc
|
||||
rev: master
|
||||
- hooks:
|
||||
- id: black
|
||||
language_version: python3
|
||||
repo: https://github.com/ambv/black
|
||||
rev: 19.10b0
|
||||
- hooks:
|
||||
- id: isort
|
||||
language_version: python3
|
||||
repo: https://github.com/timothycrosley/isort
|
||||
rev: 5.6.4
|
||||
- hooks:
|
||||
- id: flake8
|
||||
language_version: python3
|
||||
additional_dependencies:
|
||||
- flake8-bugbear
|
||||
- flake8-comprehensions
|
||||
- flake8-debugger
|
||||
- flake8-string-format
|
||||
repo: https://gitlab.com/pycqa/flake8
|
||||
rev: 3.8.4
|
||||
- repo: local
|
||||
hooks:
|
||||
- id: pylint
|
||||
name: pylint
|
||||
entry: pylint
|
||||
language: system
|
||||
types: [python]
|
||||
- hooks:
|
||||
- args:
|
||||
- -i
|
||||
- "2"
|
||||
id: beautysh
|
||||
language_version: python3
|
||||
repo: https://github.com/lovesegfault/beautysh
|
||||
rev: 6.0.1
|
||||
- hooks:
|
||||
- args:
|
||||
- git-hook
|
||||
- pre-commit
|
||||
entry: dvc
|
||||
id: dvc-pre-commit
|
||||
language: system
|
||||
name: DVC pre-commit
|
||||
stages:
|
||||
- commit
|
||||
verbose: true
|
||||
require_serial: true
|
||||
- args:
|
||||
- git-hook
|
||||
- pre-push
|
||||
entry: dvc
|
||||
id: dvc-pre-push
|
||||
language: system
|
||||
name: DVC pre-push
|
||||
stages:
|
||||
- push
|
||||
require_serial: true
|
||||
- always_run: true
|
||||
args:
|
||||
- git-hook
|
||||
- post-checkout
|
||||
entry: dvc
|
||||
id: dvc-post-checkout
|
||||
language: system
|
||||
minimum_pre_commit_version: 2.2.0
|
||||
name: DVC post-checkout
|
||||
stages:
|
||||
- post-checkout
|
||||
require_serial: true
|
||||
repo: local
|
||||
|
||||
@@ -6,8 +6,10 @@
|
||||
language: python
|
||||
language_version: python3
|
||||
name: DVC pre-commit
|
||||
require_serial: true
|
||||
stages:
|
||||
- commit
|
||||
verbose: true
|
||||
- args:
|
||||
- git-hook
|
||||
- pre-push
|
||||
@@ -16,6 +18,7 @@
|
||||
language: python
|
||||
language_version: python3
|
||||
name: DVC pre-push
|
||||
require_serial: true
|
||||
stages:
|
||||
- push
|
||||
- always_run: true
|
||||
@@ -28,5 +31,6 @@
|
||||
language_version: python3
|
||||
minimum_pre_commit_version: 2.2.0
|
||||
name: DVC post-checkout
|
||||
require_serial: true
|
||||
stages:
|
||||
- post-checkout
|
||||
|
||||
@@ -15,7 +15,11 @@ ignore-patterns=
|
||||
|
||||
# Python code to execute, usually for sys.path manipulation such as
|
||||
# pygtk.require().
|
||||
#init-hook=
|
||||
init-hook="import sys; \
|
||||
from pathlib import Path; \
|
||||
from pylint.config import find_pylintrc; \
|
||||
sys.path.append(Path(find_pylintrc()).parent / 'tests');"
|
||||
|
||||
|
||||
# Use multiple processes to speed up Pylint. Specifying 0 will auto-detect the
|
||||
# number of processors available to use.
|
||||
@@ -28,7 +32,7 @@ limit-inference-results=100
|
||||
|
||||
# List of plugins (as comma separated values of python modules names) to load,
|
||||
# usually to register additional checkers.
|
||||
load-plugins=
|
||||
load-plugins=pylint_pytest,pylint_plugin_disable
|
||||
|
||||
# Pickle collected data for later comparisons.
|
||||
persistent=yes
|
||||
@@ -60,7 +64,16 @@ confidence=
|
||||
# --enable=similarities". If you want to run only the classes checker, but have
|
||||
# no Warning level messages displayed, use "--disable=all --enable=classes
|
||||
# --disable=W".
|
||||
disable=print-statement,
|
||||
disable=format,
|
||||
# ^ most of them are covered by flake8,
|
||||
# and are conventions rather than warnings or errors
|
||||
refactoring, # will be noisy if it starts giving suggestions
|
||||
spelling,
|
||||
# design is too-few-* and too-many-* checks, too-much-* for us right now
|
||||
design,
|
||||
# following were generated by default
|
||||
# most of them are redundant Py3 checks for Py2+3 codebase
|
||||
print-statement,
|
||||
parameter-unpacking,
|
||||
unpacking-in-except,
|
||||
old-raise-syntax,
|
||||
@@ -139,9 +152,33 @@ disable=print-statement,
|
||||
deprecated-sys-function,
|
||||
exception-escape,
|
||||
comprehension-escape,
|
||||
useless-object-inheritance,
|
||||
missing-docstring,
|
||||
bad-continuation
|
||||
# custom disables start here
|
||||
no-self-use,
|
||||
invalid-name,
|
||||
# already a check enabled for `wildcard-import`
|
||||
unused-wildcard-import,
|
||||
misplaced-comparison-constant,
|
||||
# probably soon: https://github.com/iterative/dvc/issues/1843
|
||||
logging-format-interpolation,
|
||||
logging-fstring-interpolation,
|
||||
# we don't have proper docstrings yet
|
||||
# even if we do, we'll be doing it gradually
|
||||
missing-function-docstring,
|
||||
missing-module-docstring,
|
||||
missing-class-docstring,
|
||||
duplicate-code,
|
||||
# too noisy, and detects issues even when import is inside a function
|
||||
# see: https://github.com/PyCQA/pylint/issues/850
|
||||
cyclic-import,
|
||||
# isort should cover these:
|
||||
wrong-import-order,
|
||||
wrong-import-position,
|
||||
ungrouped-imports,
|
||||
multiple-imports,
|
||||
# we use it to speedup/optimize
|
||||
import-outside-toplevel,
|
||||
fixme,
|
||||
|
||||
|
||||
# Enable the message, report, category or checker with the given id(s). You can
|
||||
# either give multiple identifier separated by comma (,) or put this option
|
||||
@@ -228,7 +265,7 @@ contextmanager-decorators=contextlib.contextmanager
|
||||
# List of members which are set dynamically and missed by pylint inference
|
||||
# system, and so shouldn't trigger E1101 when accessed. Python regular
|
||||
# expressions are accepted.
|
||||
generated-members=
|
||||
generated-members=hdfs.*,pytest.lazy_fixture,logging.TRACE,logger.trace,sys.getwindowsversion
|
||||
|
||||
# Tells whether missing members accessed in mixin class should be ignored. A
|
||||
# mixin class is detected if its name ends with "mixin" (case insensitive).
|
||||
@@ -249,7 +286,7 @@ ignore-on-opaque-inference=yes
|
||||
# List of class names for which member attributes should not be checked (useful
|
||||
# for classes with dynamically set attributes). This supports the use of
|
||||
# qualified names.
|
||||
ignored-classes=optparse.Values,thread._local,_thread._local
|
||||
ignored-classes=optparse.Values,thread._local,_thread._local,Dvcfile
|
||||
|
||||
# List of module names for which member attributes should not be checked
|
||||
# (useful for modules/projects where namespaces are manipulated during runtime
|
||||
@@ -290,7 +327,7 @@ dummy-variables-rgx=_+$|(_[a-zA-Z0-9_]*[a-zA-Z0-9]+?$)|dummy|^ignored_|^unused_
|
||||
|
||||
# Argument names that match this expression will be ignored. Default to name
|
||||
# with leading underscore.
|
||||
ignored-argument-names=_.*|^ignored_|^unused_
|
||||
ignored-argument-names=_.*|^ignored_|^unused_|args|kwargs
|
||||
|
||||
# Tells whether we should check for unused import in __init__ files.
|
||||
init-import=no
|
||||
|
||||
@@ -1,11 +0,0 @@
|
||||
---
|
||||
restylers:
|
||||
- name: black
|
||||
image: restyled/restyler-black:v19.10b0
|
||||
command:
|
||||
- black
|
||||
arguments: []
|
||||
include:
|
||||
- "**/*.py"
|
||||
interpreters:
|
||||
- python
|
||||
-161
@@ -1,161 +0,0 @@
|
||||
cache:
|
||||
directories:
|
||||
- $HOME/.cache/pip
|
||||
- $HOME/.pyenv
|
||||
dist: xenial
|
||||
env:
|
||||
global:
|
||||
- HOMEBREW_NO_AUTO_UPDATE=1
|
||||
- PYENV_ROOT="$HOME/.pyenv"
|
||||
- PATH="$PYENV_ROOT/bin:$PATH"
|
||||
- PIP_CACHE_DIR="$HOME/.cache/pip" # unify pip cache location for all platforms
|
||||
stages:
|
||||
- check
|
||||
- test
|
||||
- build
|
||||
# Travis doesn't support testing python on Mac yet, so we need
|
||||
# to workaround it by installing it directly with brew.
|
||||
#
|
||||
# Note that we specify language as ruby-2.4.3 to help us satisfy
|
||||
# fpm dependencies, as travis runs el capitan with an old ruby
|
||||
# version, that causes fpm to crash.
|
||||
#
|
||||
# Each job will use the previous job's `stage` tag if not specified.
|
||||
jobs:
|
||||
include:
|
||||
# patch formatting checks
|
||||
- name: "Check patch formatting"
|
||||
stage: check
|
||||
os: linux
|
||||
language: python
|
||||
python: 3.7
|
||||
before_install:
|
||||
install:
|
||||
script: ./scripts/ci/check_patch.sh
|
||||
# test jobs
|
||||
- name: "3.7 on Windows"
|
||||
stage: test
|
||||
os: windows # Windows 10.0.17134 N/A Build 17134
|
||||
language: shell # 'language: python' is an error on Travis CI Windows
|
||||
env:
|
||||
- PYTHON_VERSION=3.7.5
|
||||
- PATH=/c/Python37:/c/Python37/Scripts:$PATH
|
||||
- name: "3.8 on Windows"
|
||||
os: windows # Windows 10.0.17134 N/A Build 17134
|
||||
language: shell # 'language: python' is an error on Travis CI Windows
|
||||
env:
|
||||
- PYTHON_VERSION=3.8.0
|
||||
- PATH=/c/Python38:/c/Python38/Scripts:$PATH
|
||||
- name: "3.5 on Linux"
|
||||
language: python
|
||||
python: 3.5
|
||||
- name: "3.6 on Linux"
|
||||
language: python
|
||||
python: 3.6
|
||||
- name: "3.7 on Linux"
|
||||
language: python
|
||||
python: 3.7
|
||||
- name: "3.8 on Linux"
|
||||
language: python
|
||||
python: 3.8
|
||||
- name: "3.7 on Mac"
|
||||
os: osx
|
||||
osx_image: xcode11.3
|
||||
# build jobs
|
||||
- name: "Mac pkg"
|
||||
stage: build
|
||||
os: osx
|
||||
osx_image: xcode9.4
|
||||
language: ruby
|
||||
rvm: 2.4.3
|
||||
install:
|
||||
script: ./scripts/build_posix.sh
|
||||
- name: "Windows pkg"
|
||||
os: windows
|
||||
language: shell
|
||||
install:
|
||||
script: ./scripts/build_windows.cmd
|
||||
env:
|
||||
- PYTHON_VERSION=3.7.5
|
||||
- PATH=/c/Python37:/c/Python37/Scripts:$PATH
|
||||
- name: "Linux pkgs"
|
||||
language: python
|
||||
python: 3.7
|
||||
before_install:
|
||||
install:
|
||||
script: ./scripts/build_posix.sh
|
||||
- name: "PyPI pkgs"
|
||||
language: python
|
||||
python: 3.8
|
||||
script: ./scripts/build_package.sh
|
||||
- name: Snapcraft snap
|
||||
language: python
|
||||
python: 3.8
|
||||
addons:
|
||||
snaps:
|
||||
- name: snapcraft
|
||||
channel: stable
|
||||
confinement: classic
|
||||
- name: review-tools
|
||||
channel: stable
|
||||
- name: lxd
|
||||
channel: stable
|
||||
env:
|
||||
- SNAPCRAFT_IMAGE_INFO: '{"build_url": "$TRAVIS_BUILD_URL"}'
|
||||
install:
|
||||
- sudo /snap/bin/lxd.migrate -yes
|
||||
- sudo /snap/bin/lxd waitready
|
||||
- sudo /snap/bin/lxd init --auto
|
||||
script:
|
||||
- ./scripts/build_snap.sh
|
||||
after_failure:
|
||||
- sudo journalctl -u snapd
|
||||
|
||||
before_install:
|
||||
- bash ./scripts/ci/before_install.sh
|
||||
- source env.sh
|
||||
- bash ./scripts/ci/check_python.sh
|
||||
install:
|
||||
- bash ./scripts/ci/install.sh
|
||||
script:
|
||||
- bash ./scripts/ci/script.sh
|
||||
deploy:
|
||||
- provider: releases
|
||||
api_key:
|
||||
secure: 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
|
||||
file_glob: true
|
||||
file:
|
||||
- dvc*.rpm
|
||||
- dvc*.deb
|
||||
- dvc*.pkg
|
||||
- dvc*.exe
|
||||
skip_cleanup: true
|
||||
on:
|
||||
condition: "$(./scripts/ci/deploy_condition.sh dvc*.rpm dvc*.deb dvc*.pkg dvc*.exe)"
|
||||
tags: true
|
||||
repo: iterative/dvc
|
||||
stage: build
|
||||
- provider: pypi
|
||||
user:
|
||||
secure: "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"
|
||||
password:
|
||||
secure: "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"
|
||||
skip_existing: true
|
||||
file_glob: true
|
||||
file:
|
||||
- dist/dvc*.whl
|
||||
- dist/dvc*.tar.gz
|
||||
skip_cleanup: true
|
||||
on:
|
||||
condition: "$(./scripts/ci/deploy_condition.sh dist/dvc*.whl dist/dvc*.tar.gz)"
|
||||
tags: true
|
||||
repo: iterative/dvc
|
||||
stage: build
|
||||
- provider: script
|
||||
skip_cleanup: true
|
||||
script: "(echo $SNAP_TOKEN | snapcraft login --with -) && timeout 600 snapcraft push dvc_*.snap --release $SNAP_CHANNEL || echo timed out"
|
||||
on:
|
||||
all_branches: true
|
||||
condition: "$(./scripts/ci/deploy_condition.sh dvc_*.snap) && ($TRAVIS_BRANCH = master || -n $TRAVIS_TAG)"
|
||||
repo: iterative/dvc
|
||||
stage: build
|
||||
+6
-7
@@ -10,7 +10,7 @@
|
||||
|
||||
|Release| |CI| |Maintainability| |Coverage| |Donate| |DOI|
|
||||
|
||||
|Snap| |Choco| |Brew| |Conda| |PyPI| |Packages|
|
||||
|PyPI| |Packages| |Brew| |Conda| |Choco| |Snap|
|
||||
|
||||
|
|
||||
|
||||
@@ -101,7 +101,8 @@ Snap (Snapcraft/Linux)
|
||||
snap install dvc --classic
|
||||
|
||||
This corresponds to the latest tagged release.
|
||||
Add ``--edge`` for the latest ``master`` version.
|
||||
Add ``--beta`` for the latest tagged release candidate,
|
||||
or ``--edge`` for the latest ``master`` version.
|
||||
|
||||
Choco (Chocolatey/Windows)
|
||||
--------------------------
|
||||
@@ -130,8 +131,6 @@ Conda (Anaconda)
|
||||
|
||||
conda install -c conda-forge dvc
|
||||
|
||||
Currently, this includes support for Python versions 2.7, 3.6 and 3.7.
|
||||
|
||||
pip (PyPI)
|
||||
----------
|
||||
|
||||
@@ -263,9 +262,9 @@ Iterative, *DVC: Data Version Control - Git for Data & Models* (2020)
|
||||
:target: https://travis-ci.com/iterative/dvc/branches
|
||||
:alt: Release
|
||||
|
||||
.. |CI| image:: https://img.shields.io/travis/com/iterative/dvc/master?label=dev&logo=travis
|
||||
:target: https://travis-ci.com/iterative/dvc/builds
|
||||
:alt: Travis dev branch
|
||||
.. |CI| image:: https://github.com/iterative/dvc/workflows/Tests/badge.svg?branch=master
|
||||
:target: https://github.com/iterative/dvc/actions
|
||||
:alt: GHA Tests
|
||||
|
||||
.. |Maintainability| image:: https://codeclimate.com/github/iterative/dvc/badges/gpa.svg
|
||||
:target: https://codeclimate.com/github/iterative/dvc
|
||||
|
||||
@@ -3,17 +3,7 @@ DVC
|
||||
----
|
||||
Make your data science projects reproducible and shareable.
|
||||
"""
|
||||
import warnings
|
||||
|
||||
import dvc.logger
|
||||
from dvc.version import __version__ # noqa: F401
|
||||
|
||||
|
||||
dvc.logger.setup()
|
||||
|
||||
# Ignore numpy's runtime warnings: https://github.com/numpy/numpy/pull/432.
|
||||
# We don't directly import numpy, but our dependency networkx does, causing
|
||||
# these warnings in some environments. Luckily these warnings are benign and
|
||||
# we can simply ignore them so that they don't show up when you are using dvc.
|
||||
warnings.filterwarnings("ignore", message="numpy.dtype size changed")
|
||||
warnings.filterwarnings("ignore", message="numpy.ufunc size changed")
|
||||
|
||||
+15
-14
@@ -2,12 +2,12 @@ import json
|
||||
import logging
|
||||
import os
|
||||
import platform
|
||||
import requests
|
||||
import sys
|
||||
import tempfile
|
||||
import uuid
|
||||
|
||||
import distro
|
||||
import requests
|
||||
|
||||
from dvc import __version__
|
||||
from dvc.config import Config, to_bool
|
||||
@@ -20,7 +20,6 @@ from dvc.scm.base import SCMError
|
||||
from dvc.utils import env2bool, is_binary
|
||||
from dvc.utils.fs import makedirs
|
||||
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
@@ -36,7 +35,7 @@ def collect_and_send_report(args=None, return_code=None):
|
||||
report as a JSON, where the _collector_ generates it and the _sender_
|
||||
removes it after sending it.
|
||||
"""
|
||||
report = _runtime_info()
|
||||
report = {}
|
||||
|
||||
# Include command execution information on the report only when available.
|
||||
if args and hasattr(args, "func"):
|
||||
@@ -62,7 +61,7 @@ def is_enabled():
|
||||
return enabled
|
||||
|
||||
|
||||
def send(report):
|
||||
def send(path):
|
||||
"""
|
||||
Side effect: Removes the report after sending it.
|
||||
|
||||
@@ -73,13 +72,17 @@ def send(report):
|
||||
url = "https://analytics.dvc.org"
|
||||
headers = {"content-type": "application/json"}
|
||||
|
||||
with open(report, "rb") as fobj:
|
||||
try:
|
||||
requests.post(url, data=fobj, headers=headers, timeout=5)
|
||||
except requests.exceptions.RequestException:
|
||||
logger.debug("failed to send analytics report", exc_info=True)
|
||||
with open(path) as fobj:
|
||||
report = json.load(fobj)
|
||||
|
||||
os.remove(report)
|
||||
report.update(_runtime_info())
|
||||
|
||||
try:
|
||||
requests.post(url, json=report, headers=headers, timeout=5)
|
||||
except requests.exceptions.RequestException:
|
||||
logger.debug("failed to send analytics report", exc_info=True)
|
||||
|
||||
os.remove(path)
|
||||
|
||||
|
||||
def _scm_in_use():
|
||||
@@ -155,7 +158,7 @@ def _find_or_create_user_id():
|
||||
try:
|
||||
with Lock(lockfile):
|
||||
try:
|
||||
with open(fname, "r") as fobj:
|
||||
with open(fname) as fobj:
|
||||
user_id = json.load(fobj)["user_id"]
|
||||
|
||||
except (FileNotFoundError, ValueError, KeyError):
|
||||
@@ -167,6 +170,4 @@ def _find_or_create_user_id():
|
||||
return user_id
|
||||
|
||||
except LockError:
|
||||
logger.debug(
|
||||
"Failed to acquire '{lockfile}'".format(lockfile=lockfile)
|
||||
)
|
||||
logger.debug(f"Failed to acquire '{lockfile}'")
|
||||
|
||||
+61
-19
@@ -1,16 +1,17 @@
|
||||
import os
|
||||
from contextlib import contextmanager, _GeneratorContextManager as GCM
|
||||
from contextlib import _GeneratorContextManager as GCM
|
||||
from contextlib import contextmanager
|
||||
|
||||
from dvc.repo import Repo
|
||||
from dvc.exceptions import DvcException, NotDvcRepoError
|
||||
from funcy import reraise
|
||||
|
||||
from dvc.exceptions import (
|
||||
NotDvcRepoError,
|
||||
OutputNotFoundError,
|
||||
PathMissingError,
|
||||
)
|
||||
from dvc.external_repo import external_repo
|
||||
|
||||
|
||||
class UrlNotDvcRepoError(DvcException):
|
||||
"""Thrown if the given URL is not a DVC repository."""
|
||||
|
||||
def __init__(self, url):
|
||||
super().__init__("'{}' is not a DVC repository.".format(url))
|
||||
from dvc.path_info import PathInfo
|
||||
from dvc.repo import Repo
|
||||
|
||||
|
||||
def get_url(path, repo=None, rev=None, remote=None):
|
||||
@@ -19,20 +20,27 @@ def get_url(path, repo=None, rev=None, remote=None):
|
||||
in a DVC repo. For Git repos, HEAD is used unless a rev argument is
|
||||
supplied. The default remote is tried unless a remote argument is supplied.
|
||||
|
||||
Raises UrlNotDvcRepoError if repo is not a DVC project.
|
||||
Raises OutputNotFoundError if the file is not tracked by DVC.
|
||||
|
||||
NOTE: This function does not check for the actual existence of the file or
|
||||
directory in the remote storage.
|
||||
"""
|
||||
with _make_repo(repo, rev=rev) as _repo:
|
||||
if not isinstance(_repo, Repo):
|
||||
raise UrlNotDvcRepoError(_repo.url)
|
||||
out = _repo.find_out_by_relpath(path)
|
||||
remote_obj = _repo.cloud.get_remote(remote)
|
||||
return str(remote_obj.checksum_to_path_info(out.checksum))
|
||||
path_info = PathInfo(_repo.root_dir) / path
|
||||
with reraise(FileNotFoundError, PathMissingError(path, repo)):
|
||||
metadata = _repo.repo_tree.metadata(path_info)
|
||||
|
||||
if not metadata.is_dvc:
|
||||
raise OutputNotFoundError(path, repo)
|
||||
|
||||
cloud = metadata.repo.cloud
|
||||
hash_info = _repo.repo_tree.get_hash(path_info)
|
||||
return cloud.get_url_for(remote, checksum=hash_info.value)
|
||||
|
||||
|
||||
def open(path, repo=None, rev=None, remote=None, mode="r", encoding=None):
|
||||
def open( # noqa, pylint: disable=redefined-builtin
|
||||
path, repo=None, rev=None, remote=None, mode="r", encoding=None
|
||||
):
|
||||
"""
|
||||
Open file in the supplied path tracked in a repo (both DVC projects and
|
||||
plain Git repos are supported). For Git repos, HEAD is used unless a rev
|
||||
@@ -57,7 +65,9 @@ def open(path, repo=None, rev=None, remote=None, mode="r", encoding=None):
|
||||
|
||||
|
||||
class _OpenContextManager(GCM):
|
||||
def __init__(self, func, args, kwds):
|
||||
def __init__(
|
||||
self, func, args, kwds
|
||||
): # pylint: disable=super-init-not-called
|
||||
self.gen = func(*args, **kwds)
|
||||
self.func, self.args, self.kwds = func, args, kwds
|
||||
|
||||
@@ -92,9 +102,41 @@ def _make_repo(repo_url=None, rev=None):
|
||||
repo_url = repo_url or os.getcwd()
|
||||
if rev is None and os.path.exists(repo_url):
|
||||
try:
|
||||
yield Repo(repo_url)
|
||||
yield Repo(repo_url, subrepos=True)
|
||||
return
|
||||
except NotDvcRepoError:
|
||||
pass # fallthrough to external_repo
|
||||
with external_repo(url=repo_url, rev=rev) as repo:
|
||||
yield repo
|
||||
|
||||
|
||||
def make_checkpoint():
|
||||
"""
|
||||
Signal DVC to create a checkpoint experiment.
|
||||
|
||||
If the current process is being run from DVC, this function will block
|
||||
until DVC has finished creating the checkpoint. Otherwise, this function
|
||||
will return immediately.
|
||||
"""
|
||||
import builtins
|
||||
from time import sleep
|
||||
|
||||
from dvc.env import DVC_CHECKPOINT, DVC_ROOT
|
||||
from dvc.stage.run import CHECKPOINT_SIGNAL_FILE
|
||||
|
||||
if os.getenv(DVC_CHECKPOINT) is None:
|
||||
return
|
||||
|
||||
root_dir = os.getenv(DVC_ROOT, Repo.find_root())
|
||||
signal_file = os.path.join(
|
||||
root_dir, Repo.DVC_DIR, "tmp", CHECKPOINT_SIGNAL_FILE
|
||||
)
|
||||
|
||||
with builtins.open(signal_file, "w") as fobj:
|
||||
# NOTE: force flushing/writing empty file to disk, otherwise when
|
||||
# run in certain contexts (pytest) file may not actually be written
|
||||
fobj.write("")
|
||||
fobj.flush()
|
||||
os.fsync(fobj.fileno())
|
||||
while os.path.exists(signal_file):
|
||||
sleep(1)
|
||||
|
||||
-104
@@ -1,104 +0,0 @@
|
||||
"""Manages cache of a DVC repo."""
|
||||
from collections import defaultdict
|
||||
|
||||
from funcy import cached_property
|
||||
|
||||
|
||||
def _make_remote_property(name):
|
||||
"""
|
||||
The config file is stored in a way that allows you to have a
|
||||
cache for each remote.
|
||||
|
||||
This is needed when specifying external outputs
|
||||
(as they require you to have an external cache location).
|
||||
|
||||
Imagine a config file like the following:
|
||||
|
||||
['remote "dvc-storage"']
|
||||
url = ssh://localhost/tmp
|
||||
ask_password = true
|
||||
|
||||
[cache]
|
||||
ssh = dvc-storage
|
||||
|
||||
This method creates a cached property, containing cache named `name`:
|
||||
|
||||
self.config == {'ssh': 'dvc-storage'}
|
||||
self.ssh # a RemoteSSH instance
|
||||
"""
|
||||
|
||||
def getter(self):
|
||||
from dvc.remote import Remote
|
||||
|
||||
remote = self.config.get(name)
|
||||
if not remote:
|
||||
return None
|
||||
|
||||
return Remote(self.repo, name=remote)
|
||||
|
||||
getter.__name__ = name
|
||||
return cached_property(getter)
|
||||
|
||||
|
||||
class Cache(object):
|
||||
"""Class that manages cache locations of a DVC repo.
|
||||
|
||||
Args:
|
||||
repo (dvc.repo.Repo): repo instance that this cache belongs to.
|
||||
"""
|
||||
|
||||
CACHE_DIR = "cache"
|
||||
|
||||
def __init__(self, repo):
|
||||
from dvc.remote import Remote
|
||||
|
||||
self.repo = repo
|
||||
self.config = config = repo.config["cache"]
|
||||
|
||||
local = config.get("local")
|
||||
|
||||
if local:
|
||||
settings = {"name": local}
|
||||
else:
|
||||
settings = {**config, "url": config["dir"]}
|
||||
|
||||
self.local = Remote(repo, **settings)
|
||||
|
||||
s3 = _make_remote_property("s3")
|
||||
gs = _make_remote_property("gs")
|
||||
ssh = _make_remote_property("ssh")
|
||||
hdfs = _make_remote_property("hdfs")
|
||||
azure = _make_remote_property("azure")
|
||||
|
||||
|
||||
class NamedCache(object):
|
||||
def __init__(self):
|
||||
self._items = defaultdict(lambda: defaultdict(set))
|
||||
self.external = defaultdict(set)
|
||||
|
||||
@classmethod
|
||||
def make(cls, scheme, checksum, name):
|
||||
cache = cls()
|
||||
cache.add(scheme, checksum, name)
|
||||
return cache
|
||||
|
||||
def __getitem__(self, key):
|
||||
return self._items[key]
|
||||
|
||||
def add(self, scheme, checksum, name):
|
||||
self._items[scheme][checksum].add(name)
|
||||
|
||||
def add_external(self, url, rev, path):
|
||||
self.external[url, rev].add(path)
|
||||
|
||||
def update(self, cache, suffix=""):
|
||||
for scheme, src in cache._items.items():
|
||||
dst = self._items[scheme]
|
||||
for checksum, names in src.items():
|
||||
if suffix:
|
||||
dst[checksum].update(n + suffix for n in names)
|
||||
else:
|
||||
dst[checksum].update(names)
|
||||
|
||||
for repo_pair, files in cache.external.items():
|
||||
self.external[repo_pair].update(files)
|
||||
Vendored
+176
@@ -0,0 +1,176 @@
|
||||
"""Manages cache of a DVC repo."""
|
||||
from collections import defaultdict
|
||||
|
||||
from ..scheme import Schemes
|
||||
|
||||
|
||||
def get_cloud_cache(tree):
|
||||
from .base import CloudCache
|
||||
from .local import LocalCache
|
||||
from .ssh import SSHCache
|
||||
|
||||
if tree.scheme == Schemes.LOCAL:
|
||||
return LocalCache(tree)
|
||||
|
||||
if tree.scheme == Schemes.SSH:
|
||||
return SSHCache(tree)
|
||||
|
||||
return CloudCache(tree)
|
||||
|
||||
|
||||
def _get_cache(repo, settings):
|
||||
from ..tree import get_cloud_tree
|
||||
|
||||
if not settings:
|
||||
return None
|
||||
|
||||
tree = get_cloud_tree(repo, **settings)
|
||||
return get_cloud_cache(tree)
|
||||
|
||||
|
||||
class Cache:
|
||||
"""Class that manages cache locations of a DVC repo.
|
||||
|
||||
Args:
|
||||
repo (dvc.repo.Repo): repo instance that this cache belongs to.
|
||||
"""
|
||||
|
||||
CACHE_DIR = "cache"
|
||||
CLOUD_SCHEMES = [
|
||||
Schemes.S3,
|
||||
Schemes.GS,
|
||||
Schemes.SSH,
|
||||
Schemes.HDFS,
|
||||
Schemes.WEBHDFS,
|
||||
]
|
||||
|
||||
def __init__(self, repo):
|
||||
self.repo = repo
|
||||
self.config = config = repo.config["cache"]
|
||||
self._cache = {}
|
||||
|
||||
local = config.get("local")
|
||||
|
||||
if local:
|
||||
settings = {"name": local}
|
||||
elif "dir" not in config:
|
||||
settings = None
|
||||
else:
|
||||
from ..config import LOCAL_COMMON
|
||||
|
||||
settings = {"url": config["dir"]}
|
||||
for opt in LOCAL_COMMON.keys():
|
||||
if opt in config:
|
||||
settings[str(opt)] = config.get(opt)
|
||||
|
||||
self._cache[Schemes.LOCAL] = _get_cache(repo, settings)
|
||||
|
||||
for scheme in self.CLOUD_SCHEMES:
|
||||
remote = self.config.get(scheme)
|
||||
settings = {"name": remote} if remote else None
|
||||
self._cache[scheme] = _get_cache(repo, settings)
|
||||
|
||||
def __getattr__(self, name):
|
||||
try:
|
||||
return self._cache[name]
|
||||
except KeyError as exc:
|
||||
raise AttributeError from exc
|
||||
|
||||
def by_scheme(self):
|
||||
yield from self._cache.items()
|
||||
|
||||
|
||||
class NamedCacheItem:
|
||||
def __init__(self):
|
||||
self.names = set()
|
||||
self.children = defaultdict(NamedCacheItem)
|
||||
|
||||
def __eq__(self, other):
|
||||
return self.names == other.names and self.children == other.children
|
||||
|
||||
def child_keys(self):
|
||||
for key, child in self.children.items():
|
||||
yield key
|
||||
yield from child.child_keys()
|
||||
|
||||
def child_names(self):
|
||||
for key, child in self.children.items():
|
||||
yield key, child.names
|
||||
yield from child.child_names()
|
||||
|
||||
def add(self, checksum, item):
|
||||
self.children[checksum].update(item)
|
||||
|
||||
def update(self, item, suffix=""):
|
||||
if suffix:
|
||||
self.names.update(n + suffix for n in item.names)
|
||||
else:
|
||||
self.names.update(item.names)
|
||||
for checksum, child_item in item.children.items():
|
||||
self.children[checksum].update(child_item)
|
||||
|
||||
|
||||
class NamedCache:
|
||||
# pylint: disable=protected-access
|
||||
def __init__(self):
|
||||
self._items = defaultdict(lambda: defaultdict(NamedCacheItem))
|
||||
self.external = defaultdict(set)
|
||||
|
||||
@classmethod
|
||||
def make(cls, scheme, checksum, name):
|
||||
cache = cls()
|
||||
cache.add(scheme, checksum, name)
|
||||
return cache
|
||||
|
||||
def __getitem__(self, key):
|
||||
return self._items[key]
|
||||
|
||||
def add(self, scheme, checksum, name):
|
||||
"""Add a mapped name for the specified checksum."""
|
||||
self._items[scheme][checksum].names.add(name)
|
||||
|
||||
def add_child_cache(self, checksum, cache, suffix=""):
|
||||
"""Add/update child cache for the specified checksum."""
|
||||
for scheme, src in cache._items.items():
|
||||
dst = self._items[scheme][checksum].children
|
||||
for child_checksum, item in src.items():
|
||||
dst[child_checksum].update(item, suffix=suffix)
|
||||
|
||||
for repo_pair, files in cache.external.items():
|
||||
self.external[repo_pair].update(files)
|
||||
|
||||
def add_external(self, url, rev, path):
|
||||
self.external[url, rev].add(path)
|
||||
|
||||
def update(self, cache, suffix=""):
|
||||
for scheme, src in cache._items.items():
|
||||
dst = self._items[scheme]
|
||||
for checksum, item in src.items():
|
||||
dst[checksum].update(item, suffix=suffix)
|
||||
|
||||
for repo_pair, files in cache.external.items():
|
||||
self.external[repo_pair].update(files)
|
||||
|
||||
def scheme_keys(self, scheme):
|
||||
"""Iterate over a flat list of all keys for the specified scheme,
|
||||
including children.
|
||||
"""
|
||||
for key, item in self._items[scheme].items():
|
||||
yield key
|
||||
yield from item.child_keys()
|
||||
|
||||
def scheme_names(self, scheme):
|
||||
"""Iterate over a flat list of checksum, names items for the specified
|
||||
scheme, including children.
|
||||
"""
|
||||
for key, item in self._items[scheme].items():
|
||||
yield key, item.names
|
||||
yield from item.child_names()
|
||||
|
||||
def dir_keys(self, scheme):
|
||||
return (
|
||||
key for key, item in self._items[scheme].items() if item.children
|
||||
)
|
||||
|
||||
def child_keys(self, scheme, checksum):
|
||||
return self._items[scheme][checksum].child_keys()
|
||||
Vendored
+937
@@ -0,0 +1,937 @@
|
||||
import itertools
|
||||
import json
|
||||
import logging
|
||||
from concurrent.futures import ThreadPoolExecutor
|
||||
from copy import copy
|
||||
from typing import Optional
|
||||
|
||||
from funcy import decorator
|
||||
from shortuuid import uuid
|
||||
|
||||
import dvc.prompt as prompt
|
||||
from dvc.dir_info import DirInfo
|
||||
from dvc.exceptions import (
|
||||
CacheLinkError,
|
||||
CheckoutError,
|
||||
ConfirmRemoveError,
|
||||
DvcException,
|
||||
)
|
||||
from dvc.progress import Tqdm
|
||||
from dvc.remote.slow_link_detection import ( # type: ignore[attr-defined]
|
||||
slow_link_guard,
|
||||
)
|
||||
|
||||
from ..tree.base import RemoteActionNotImplemented
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
class DirCacheError(DvcException):
|
||||
def __init__(self, hash_):
|
||||
super().__init__(
|
||||
f"Failed to load dir cache for hash value: '{hash_}'."
|
||||
)
|
||||
|
||||
|
||||
@decorator
|
||||
def use_state(call):
|
||||
tree = call._args[0].tree # pylint: disable=protected-access
|
||||
with tree.state:
|
||||
return call()
|
||||
|
||||
|
||||
class CloudCache:
|
||||
"""Cloud cache class."""
|
||||
|
||||
DEFAULT_CACHE_TYPES = ["copy"]
|
||||
CACHE_MODE: Optional[int] = None
|
||||
|
||||
def __init__(self, tree):
|
||||
self.tree = tree
|
||||
self.repo = tree.repo
|
||||
|
||||
self.cache_types = tree.config.get("type") or copy(
|
||||
self.DEFAULT_CACHE_TYPES
|
||||
)
|
||||
self.cache_type_confirmed = False
|
||||
self._dir_info = {}
|
||||
|
||||
def get_dir_cache(self, hash_info):
|
||||
assert hash_info
|
||||
|
||||
dir_info = self._dir_info.get(hash_info.value)
|
||||
if dir_info:
|
||||
return dir_info
|
||||
|
||||
try:
|
||||
dir_info = self.load_dir_cache(hash_info)
|
||||
except DirCacheError:
|
||||
dir_info = DirInfo()
|
||||
|
||||
self._dir_info[hash_info.value] = dir_info
|
||||
return dir_info
|
||||
|
||||
def load_dir_cache(self, hash_info):
|
||||
path_info = self.tree.hash_to_path_info(hash_info.value)
|
||||
|
||||
try:
|
||||
with self.tree.open(path_info, "r") as fobj:
|
||||
d = json.load(fobj)
|
||||
except (ValueError, FileNotFoundError) as exc:
|
||||
raise DirCacheError(hash_info) from exc
|
||||
|
||||
if not isinstance(d, list):
|
||||
logger.error(
|
||||
"dir cache file format error '%s' [skipping the file]",
|
||||
path_info,
|
||||
)
|
||||
d = []
|
||||
|
||||
return DirInfo.from_list(d)
|
||||
|
||||
def changed(self, path_info, hash_info):
|
||||
"""Checks if data has changed.
|
||||
|
||||
A file is considered changed if:
|
||||
- It doesn't exist on the working directory (was unlinked)
|
||||
- Hash value is not computed (saving a new file)
|
||||
- The hash value stored is different from the given one
|
||||
- There's no file in the cache
|
||||
|
||||
Args:
|
||||
path_info: dict with path information.
|
||||
hash: expected hash value for this data.
|
||||
|
||||
Returns:
|
||||
bool: True if data has changed, False otherwise.
|
||||
"""
|
||||
|
||||
logger.debug(
|
||||
"checking if '%s'('%s') has changed.", path_info, hash_info
|
||||
)
|
||||
|
||||
if not self.tree.exists(path_info):
|
||||
logger.debug("'%s' doesn't exist.", path_info)
|
||||
return True
|
||||
|
||||
if not hash_info:
|
||||
logger.debug("hash value for '%s' is missing.", path_info)
|
||||
return True
|
||||
|
||||
if self.changed_cache(hash_info):
|
||||
logger.debug(
|
||||
"cache for '%s'('%s') has changed.", path_info, hash_info
|
||||
)
|
||||
return True
|
||||
|
||||
actual = self.tree.get_hash(path_info)
|
||||
if hash_info != actual:
|
||||
logger.debug(
|
||||
"hash value '%s' for '%s' has changed (actual '%s').",
|
||||
hash_info,
|
||||
actual,
|
||||
path_info,
|
||||
)
|
||||
return True
|
||||
|
||||
logger.debug("'%s' hasn't changed.", path_info)
|
||||
return False
|
||||
|
||||
def link(self, from_info, to_info):
|
||||
self._link(from_info, to_info, self.cache_types)
|
||||
|
||||
def _link(self, from_info, to_info, link_types):
|
||||
assert self.tree.isfile(from_info)
|
||||
|
||||
self.tree.makedirs(to_info.parent)
|
||||
|
||||
self._try_links(from_info, to_info, link_types)
|
||||
|
||||
def _verify_link(self, path_info, link_type):
|
||||
if self.cache_type_confirmed:
|
||||
return
|
||||
|
||||
is_link = getattr(self.tree, f"is_{link_type}", None)
|
||||
if is_link and not is_link(path_info):
|
||||
self.tree.remove(path_info)
|
||||
raise DvcException(f"failed to verify {link_type}")
|
||||
|
||||
self.cache_type_confirmed = True
|
||||
|
||||
@slow_link_guard
|
||||
def _try_links(self, from_info, to_info, link_types):
|
||||
while link_types:
|
||||
link_method = getattr(self.tree, link_types[0])
|
||||
try:
|
||||
self._do_link(from_info, to_info, link_method)
|
||||
self._verify_link(to_info, link_types[0])
|
||||
return
|
||||
|
||||
except DvcException as exc:
|
||||
logger.debug(
|
||||
"Cache type '%s' is not supported: %s", link_types[0], exc
|
||||
)
|
||||
del link_types[0]
|
||||
|
||||
raise CacheLinkError([to_info])
|
||||
|
||||
def _do_link(self, from_info, to_info, link_method):
|
||||
if self.tree.exists(to_info):
|
||||
raise DvcException(f"Link '{to_info}' already exists!")
|
||||
|
||||
link_method(from_info, to_info)
|
||||
|
||||
logger.debug(
|
||||
"Created '%s': %s -> %s", self.cache_types[0], from_info, to_info,
|
||||
)
|
||||
|
||||
def _save_file(self, path_info, tree, hash_info, save_link=True, **kwargs):
|
||||
assert hash_info
|
||||
|
||||
cache_info = self.tree.hash_to_path_info(hash_info.value)
|
||||
if tree == self.tree:
|
||||
if self.changed_cache(hash_info):
|
||||
self.tree.move(path_info, cache_info, mode=self.CACHE_MODE)
|
||||
self.link(cache_info, path_info)
|
||||
elif self.tree.iscopy(path_info) and self._cache_is_copy(
|
||||
path_info
|
||||
):
|
||||
# Default relink procedure involves unneeded copy
|
||||
self.tree.unprotect(path_info)
|
||||
else:
|
||||
self.tree.remove(path_info)
|
||||
self.link(cache_info, path_info)
|
||||
|
||||
if save_link:
|
||||
self.tree.state.save_link(path_info)
|
||||
# we need to update path and cache, since in case of reflink,
|
||||
# or copy cache type moving original file results in updates on
|
||||
# next executed command, which causes md5 recalculation
|
||||
self.tree.state.save(path_info, hash_info)
|
||||
else:
|
||||
if self.changed_cache(hash_info):
|
||||
with tree.open(path_info, mode="rb") as fobj:
|
||||
# if tree has fetch enabled, DVC out will be fetched on
|
||||
# open and we do not need to read/copy any data
|
||||
if not (
|
||||
tree.isdvc(path_info, strict=False) and tree.fetch
|
||||
):
|
||||
self.tree.copy_fobj(fobj, cache_info)
|
||||
callback = kwargs.get("download_callback")
|
||||
if callback:
|
||||
callback(1)
|
||||
|
||||
self.tree.state.save(cache_info, hash_info)
|
||||
|
||||
def _cache_is_copy(self, path_info):
|
||||
"""Checks whether cache uses copies."""
|
||||
if self.cache_type_confirmed:
|
||||
return self.cache_types[0] == "copy"
|
||||
|
||||
if set(self.cache_types) <= {"copy"}:
|
||||
return True
|
||||
|
||||
workspace_file = path_info.with_name("." + uuid())
|
||||
test_cache_file = self.tree.path_info / ".cache_type_test_file"
|
||||
if not self.tree.exists(test_cache_file):
|
||||
with self.tree.open(test_cache_file, "wb") as fobj:
|
||||
fobj.write(bytes(1))
|
||||
try:
|
||||
self.link(test_cache_file, workspace_file)
|
||||
finally:
|
||||
self.tree.remove(workspace_file)
|
||||
self.tree.remove(test_cache_file)
|
||||
|
||||
self.cache_type_confirmed = True
|
||||
return self.cache_types[0] == "copy"
|
||||
|
||||
def _get_dir_info_hash(self, dir_info):
|
||||
import tempfile
|
||||
|
||||
from dvc.path_info import PathInfo
|
||||
from dvc.utils import tmp_fname
|
||||
|
||||
tmp = tempfile.NamedTemporaryFile(delete=False).name
|
||||
with open(tmp, "w+") as fobj:
|
||||
json.dump(dir_info.to_list(), fobj, sort_keys=True)
|
||||
|
||||
from_info = PathInfo(tmp)
|
||||
to_info = self.tree.path_info / tmp_fname("")
|
||||
self.tree.upload(from_info, to_info, no_progress_bar=True)
|
||||
|
||||
hash_info = self.tree.get_file_hash(to_info)
|
||||
hash_info.value += self.tree.CHECKSUM_DIR_SUFFIX
|
||||
hash_info.dir_info = dir_info
|
||||
hash_info.nfiles = dir_info.nfiles
|
||||
|
||||
return hash_info, to_info
|
||||
|
||||
@use_state
|
||||
def save_dir_info(self, dir_info, hash_info=None):
|
||||
if (
|
||||
hash_info
|
||||
and hash_info.name == self.tree.PARAM_CHECKSUM
|
||||
and not self.changed_cache_file(hash_info)
|
||||
):
|
||||
return hash_info
|
||||
|
||||
hi, tmp_info = self._get_dir_info_hash(dir_info)
|
||||
new_info = self.tree.hash_to_path_info(hi.value)
|
||||
if self.changed_cache_file(hi):
|
||||
self.tree.makedirs(new_info.parent)
|
||||
self.tree.move(tmp_info, new_info, mode=self.CACHE_MODE)
|
||||
|
||||
self.tree.state.save(new_info, hi)
|
||||
|
||||
return hi
|
||||
|
||||
def _save_dir(self, path_info, tree, hash_info, save_link=True, **kwargs):
|
||||
if not hash_info.dir_info:
|
||||
hash_info.dir_info = tree.cache.get_dir_cache(hash_info)
|
||||
hi = self.save_dir_info(hash_info.dir_info, hash_info)
|
||||
for entry_info, entry_hash in Tqdm(
|
||||
hi.dir_info.items(path_info),
|
||||
desc="Saving " + path_info.name,
|
||||
unit="file",
|
||||
):
|
||||
self._save_file(
|
||||
entry_info, tree, entry_hash, save_link=False, **kwargs
|
||||
)
|
||||
|
||||
if save_link:
|
||||
self.tree.state.save_link(path_info)
|
||||
if self.tree.exists(path_info):
|
||||
self.tree.state.save(path_info, hi)
|
||||
|
||||
cache_info = self.tree.hash_to_path_info(hi.value)
|
||||
self.tree.state.save(cache_info, hi)
|
||||
|
||||
@use_state
|
||||
def save(self, path_info, tree, hash_info, save_link=True, **kwargs):
|
||||
if path_info.scheme != self.tree.scheme:
|
||||
raise RemoteActionNotImplemented(
|
||||
f"save {path_info.scheme} -> {self.tree.scheme}",
|
||||
self.tree.scheme,
|
||||
)
|
||||
|
||||
self._save(path_info, tree, hash_info, save_link, **kwargs)
|
||||
|
||||
def _save(self, path_info, tree, hash_info, save_link=True, **kwargs):
|
||||
to_info = self.tree.hash_to_path_info(hash_info.value)
|
||||
logger.debug("Saving '%s' to '%s'.", path_info, to_info)
|
||||
|
||||
if tree.isdir(path_info):
|
||||
self._save_dir(path_info, tree, hash_info, save_link, **kwargs)
|
||||
else:
|
||||
self._save_file(path_info, tree, hash_info, save_link, **kwargs)
|
||||
|
||||
# Override to return path as a string instead of PathInfo for clouds
|
||||
# which support string paths (see local)
|
||||
def hash_to_path(self, hash_):
|
||||
return self.tree.hash_to_path_info(hash_)
|
||||
|
||||
def changed_cache_file(self, hash_info):
|
||||
"""Compare the given hash with the (corresponding) actual one.
|
||||
|
||||
- Use `State` as a cache for computed hashes
|
||||
+ The entries are invalidated by taking into account the following:
|
||||
* mtime
|
||||
* inode
|
||||
* size
|
||||
* hash
|
||||
|
||||
- Remove the file from cache if it doesn't match the actual hash
|
||||
"""
|
||||
# Prefer string path over PathInfo when possible due to performance
|
||||
cache_info = self.hash_to_path(hash_info.value)
|
||||
if self.tree.is_protected(cache_info):
|
||||
logger.debug(
|
||||
"Assuming '%s' is unchanged since it is read-only", cache_info
|
||||
)
|
||||
return False
|
||||
|
||||
actual = self.tree.get_hash(cache_info)
|
||||
|
||||
logger.debug(
|
||||
"cache '%s' expected '%s' actual '%s'",
|
||||
cache_info,
|
||||
hash_info,
|
||||
actual,
|
||||
)
|
||||
|
||||
if not hash_info or not actual:
|
||||
return True
|
||||
|
||||
if actual.value.split(".")[0] == hash_info.value.split(".")[0]:
|
||||
# making cache file read-only so we don't need to check it
|
||||
# next time
|
||||
self.tree.protect(cache_info)
|
||||
return False
|
||||
|
||||
if self.tree.exists(cache_info):
|
||||
logger.warning("corrupted cache file '%s'.", cache_info)
|
||||
self.tree.remove(cache_info)
|
||||
|
||||
return True
|
||||
|
||||
def _changed_dir_cache(self, hash_info, path_info=None, filter_info=None):
|
||||
if self.changed_cache_file(hash_info):
|
||||
return True
|
||||
|
||||
dir_info = self.get_dir_cache(hash_info)
|
||||
for entry_info, entry_hash in dir_info.items(path_info):
|
||||
if path_info and filter_info:
|
||||
if not entry_info.isin_or_eq(filter_info):
|
||||
continue
|
||||
|
||||
if self.changed_cache_file(entry_hash):
|
||||
return True
|
||||
|
||||
return False
|
||||
|
||||
def changed_cache(self, hash_info, path_info=None, filter_info=None):
|
||||
if hash_info.isdir:
|
||||
return self._changed_dir_cache(
|
||||
hash_info, path_info=path_info, filter_info=filter_info
|
||||
)
|
||||
return self.changed_cache_file(hash_info)
|
||||
|
||||
def already_cached(self, path_info):
|
||||
current = self.tree.get_hash(path_info)
|
||||
|
||||
if not current:
|
||||
return False
|
||||
|
||||
return not self.changed_cache(current)
|
||||
|
||||
def safe_remove(self, path_info, force=False):
|
||||
if not self.tree.exists(path_info):
|
||||
return
|
||||
|
||||
if not force and not self.already_cached(path_info):
|
||||
msg = (
|
||||
"file '{}' is going to be removed."
|
||||
" Are you sure you want to proceed?".format(str(path_info))
|
||||
)
|
||||
|
||||
if not prompt.confirm(msg):
|
||||
raise ConfirmRemoveError(str(path_info))
|
||||
|
||||
self.tree.remove(path_info)
|
||||
|
||||
def _checkout_file(
|
||||
self, path_info, hash_info, force, progress_callback=None, relink=False
|
||||
):
|
||||
"""The file is changed we need to checkout a new copy"""
|
||||
added, modified = True, False
|
||||
cache_info = self.tree.hash_to_path_info(hash_info.value)
|
||||
if self.tree.exists(path_info):
|
||||
logger.debug("data '%s' will be replaced.", path_info)
|
||||
self.safe_remove(path_info, force=force)
|
||||
added, modified = False, True
|
||||
|
||||
self.link(cache_info, path_info)
|
||||
self.tree.state.save_link(path_info)
|
||||
self.tree.state.save(path_info, hash_info)
|
||||
if progress_callback:
|
||||
progress_callback(str(path_info))
|
||||
|
||||
return added, modified and not relink
|
||||
|
||||
def _checkout_dir(
|
||||
self,
|
||||
path_info,
|
||||
hash_info,
|
||||
force,
|
||||
progress_callback=None,
|
||||
relink=False,
|
||||
filter_info=None,
|
||||
):
|
||||
added, modified = False, False
|
||||
# Create dir separately so that dir is created
|
||||
# even if there are no files in it
|
||||
if not self.tree.exists(path_info):
|
||||
added = True
|
||||
self.tree.makedirs(path_info)
|
||||
|
||||
dir_info = self.get_dir_cache(hash_info)
|
||||
|
||||
logger.debug("Linking directory '%s'.", path_info)
|
||||
|
||||
for entry_info, entry_hash_info in dir_info.items(path_info):
|
||||
entry_cache_info = self.tree.hash_to_path_info(
|
||||
entry_hash_info.value
|
||||
)
|
||||
|
||||
if filter_info and not entry_info.isin_or_eq(filter_info):
|
||||
continue
|
||||
|
||||
if relink or self.changed(entry_info, entry_hash_info):
|
||||
modified = True
|
||||
self.safe_remove(entry_info, force=force)
|
||||
self.link(entry_cache_info, entry_info)
|
||||
self.tree.state.save(entry_info, entry_hash_info)
|
||||
if progress_callback:
|
||||
progress_callback(str(entry_info))
|
||||
|
||||
modified = (
|
||||
self._remove_redundant_files(path_info, dir_info, force)
|
||||
or modified
|
||||
)
|
||||
|
||||
self.tree.state.save_link(path_info)
|
||||
self.tree.state.save(path_info, hash_info)
|
||||
|
||||
# relink is not modified, assume it as nochange
|
||||
return added, not added and modified and not relink
|
||||
|
||||
def _remove_redundant_files(self, path_info, dir_info, force):
|
||||
existing_files = set(self.tree.walk_files(path_info))
|
||||
|
||||
needed_files = {info for info, _ in dir_info.items(path_info)}
|
||||
redundant_files = existing_files - needed_files
|
||||
for path in redundant_files:
|
||||
self.safe_remove(path, force)
|
||||
|
||||
return bool(redundant_files)
|
||||
|
||||
@use_state
|
||||
def checkout(
|
||||
self,
|
||||
path_info,
|
||||
hash_info,
|
||||
force=False,
|
||||
progress_callback=None,
|
||||
relink=False,
|
||||
filter_info=None,
|
||||
quiet=False,
|
||||
):
|
||||
if path_info.scheme not in ["local", self.tree.scheme]:
|
||||
raise NotImplementedError
|
||||
|
||||
failed = None
|
||||
skip = False
|
||||
if not hash_info:
|
||||
if not quiet:
|
||||
logger.warning(
|
||||
"No file hash info found for '%s'. It won't be created.",
|
||||
path_info,
|
||||
)
|
||||
self.safe_remove(path_info, force=force)
|
||||
failed = path_info
|
||||
|
||||
elif not relink and not self.changed(path_info, hash_info):
|
||||
logger.debug("Data '%s' didn't change.", path_info)
|
||||
skip = True
|
||||
|
||||
elif self.changed_cache(
|
||||
hash_info, path_info=path_info, filter_info=filter_info
|
||||
):
|
||||
if not quiet:
|
||||
logger.warning(
|
||||
"Cache '%s' not found. File '%s' won't be created.",
|
||||
hash_info,
|
||||
path_info,
|
||||
)
|
||||
self.safe_remove(path_info, force=force)
|
||||
failed = path_info
|
||||
|
||||
if failed or skip:
|
||||
if progress_callback:
|
||||
progress_callback(
|
||||
str(path_info),
|
||||
self.get_files_number(
|
||||
self.tree.path_info, hash_info, filter_info
|
||||
),
|
||||
)
|
||||
if failed:
|
||||
raise CheckoutError([failed])
|
||||
return
|
||||
|
||||
logger.debug(
|
||||
"Checking out '%s' with cache '%s'.", path_info, hash_info
|
||||
)
|
||||
|
||||
return self._checkout(
|
||||
path_info,
|
||||
hash_info,
|
||||
force,
|
||||
progress_callback,
|
||||
relink,
|
||||
filter_info,
|
||||
)
|
||||
|
||||
def _checkout(
|
||||
self,
|
||||
path_info,
|
||||
hash_info,
|
||||
force=False,
|
||||
progress_callback=None,
|
||||
relink=False,
|
||||
filter_info=None,
|
||||
):
|
||||
if not hash_info.isdir:
|
||||
return self._checkout_file(
|
||||
path_info, hash_info, force, progress_callback, relink
|
||||
)
|
||||
|
||||
return self._checkout_dir(
|
||||
path_info, hash_info, force, progress_callback, relink, filter_info
|
||||
)
|
||||
|
||||
def get_files_number(self, path_info, hash_info, filter_info):
|
||||
from funcy.py3 import ilen
|
||||
|
||||
if not hash_info:
|
||||
return 0
|
||||
|
||||
if not hash_info.isdir:
|
||||
return 1
|
||||
|
||||
if not filter_info:
|
||||
return self.get_dir_cache(hash_info).nfiles
|
||||
|
||||
return ilen(
|
||||
filter_info.isin_or_eq(path_info / relpath)
|
||||
for relpath, _ in self.get_dir_cache(hash_info).items()
|
||||
)
|
||||
|
||||
def _get_dir_size(self, dir_info):
|
||||
try:
|
||||
return sum(
|
||||
self.tree.getsize(self.tree.hash_to_path_info(hi.value))
|
||||
for _, hi in dir_info.items()
|
||||
)
|
||||
except FileNotFoundError:
|
||||
return None
|
||||
|
||||
def merge(self, ancestor_info, our_info, their_info):
|
||||
assert our_info
|
||||
assert their_info
|
||||
|
||||
if ancestor_info:
|
||||
ancestor = self.get_dir_cache(ancestor_info)
|
||||
else:
|
||||
ancestor = DirInfo()
|
||||
|
||||
our = self.get_dir_cache(our_info)
|
||||
their = self.get_dir_cache(their_info)
|
||||
|
||||
merged = our.merge(ancestor, their)
|
||||
hash_info = self.save_dir_info(merged)
|
||||
hash_info.size = self._get_dir_size(merged)
|
||||
return hash_info
|
||||
|
||||
@use_state
|
||||
def get_hash(self, tree, path_info):
|
||||
hash_info = tree.get_hash(path_info)
|
||||
if not hash_info.isdir:
|
||||
assert hash_info.name == self.tree.PARAM_CHECKSUM
|
||||
return hash_info
|
||||
|
||||
hi = self.save_dir_info(hash_info.dir_info, hash_info)
|
||||
hi.size = hash_info.size
|
||||
return hi
|
||||
|
||||
def set_dir_info(self, hash_info):
|
||||
assert hash_info.isdir
|
||||
|
||||
hash_info.dir_info = self.get_dir_cache(hash_info)
|
||||
hash_info.nfiles = hash_info.dir_info.nfiles
|
||||
|
||||
def _list_paths(self, prefix=None, progress_callback=None):
|
||||
if prefix:
|
||||
if len(prefix) > 2:
|
||||
path_info = self.tree.path_info / prefix[:2] / prefix[2:]
|
||||
else:
|
||||
path_info = self.tree.path_info / prefix[:2]
|
||||
prefix = True
|
||||
else:
|
||||
path_info = self.tree.path_info
|
||||
prefix = False
|
||||
if progress_callback:
|
||||
for file_info in self.tree.walk_files(path_info, prefix=prefix):
|
||||
progress_callback()
|
||||
yield file_info.path
|
||||
else:
|
||||
yield from self.tree.walk_files(path_info, prefix=prefix)
|
||||
|
||||
def _path_to_hash(self, path):
|
||||
parts = self.tree.PATH_CLS(path).parts[-2:]
|
||||
|
||||
if not (len(parts) == 2 and parts[0] and len(parts[0]) == 2):
|
||||
raise ValueError(f"Bad cache file path '{path}'")
|
||||
|
||||
return "".join(parts)
|
||||
|
||||
def list_hashes(self, prefix=None, progress_callback=None):
|
||||
"""Iterate over hashes in this tree.
|
||||
|
||||
If `prefix` is specified, only hashes which begin with `prefix`
|
||||
will be returned.
|
||||
"""
|
||||
for path in self._list_paths(prefix, progress_callback):
|
||||
try:
|
||||
yield self._path_to_hash(path)
|
||||
except ValueError:
|
||||
logger.debug(
|
||||
"'%s' doesn't look like a cache file, skipping", path
|
||||
)
|
||||
|
||||
def _hashes_with_limit(self, limit, prefix=None, progress_callback=None):
|
||||
count = 0
|
||||
for hash_ in self.list_hashes(prefix, progress_callback):
|
||||
yield hash_
|
||||
count += 1
|
||||
if count > limit:
|
||||
logger.debug(
|
||||
"`list_hashes()` returned max '{}' hashes, "
|
||||
"skipping remaining results".format(limit)
|
||||
)
|
||||
return
|
||||
|
||||
def _max_estimation_size(self, hashes):
|
||||
# Max remote size allowed for us to use traverse method
|
||||
return max(
|
||||
self.tree.TRAVERSE_THRESHOLD_SIZE,
|
||||
len(hashes)
|
||||
/ self.tree.TRAVERSE_WEIGHT_MULTIPLIER
|
||||
* self.tree.LIST_OBJECT_PAGE_SIZE,
|
||||
)
|
||||
|
||||
def _estimate_remote_size(self, hashes=None, name=None):
|
||||
"""Estimate tree size based on number of entries beginning with
|
||||
"00..." prefix.
|
||||
"""
|
||||
prefix = "0" * self.tree.TRAVERSE_PREFIX_LEN
|
||||
total_prefixes = pow(16, self.tree.TRAVERSE_PREFIX_LEN)
|
||||
if hashes:
|
||||
max_hashes = self._max_estimation_size(hashes)
|
||||
else:
|
||||
max_hashes = None
|
||||
|
||||
with Tqdm(
|
||||
desc="Estimating size of "
|
||||
+ (f"cache in '{name}'" if name else "remote cache"),
|
||||
unit="file",
|
||||
) as pbar:
|
||||
|
||||
def update(n=1):
|
||||
pbar.update(n * total_prefixes)
|
||||
|
||||
if max_hashes:
|
||||
hashes = self._hashes_with_limit(
|
||||
max_hashes / total_prefixes, prefix, update
|
||||
)
|
||||
else:
|
||||
hashes = self.list_hashes(prefix, update)
|
||||
|
||||
remote_hashes = set(hashes)
|
||||
if remote_hashes:
|
||||
remote_size = total_prefixes * len(remote_hashes)
|
||||
else:
|
||||
remote_size = total_prefixes
|
||||
logger.debug(f"Estimated remote size: {remote_size} files")
|
||||
return remote_size, remote_hashes
|
||||
|
||||
def list_hashes_traverse(
|
||||
self, remote_size, remote_hashes, jobs=None, name=None
|
||||
):
|
||||
"""Iterate over all hashes found in this tree.
|
||||
Hashes are fetched in parallel according to prefix, except in
|
||||
cases where the remote size is very small.
|
||||
|
||||
All hashes from the remote (including any from the size
|
||||
estimation step passed via the `remote_hashes` argument) will be
|
||||
returned.
|
||||
|
||||
NOTE: For large remotes the list of hashes will be very
|
||||
big(e.g. 100M entries, md5 for each is 32 bytes, so ~3200Mb list)
|
||||
and we don't really need all of it at the same time, so it makes
|
||||
sense to use a generator to gradually iterate over it, without
|
||||
keeping all of it in memory.
|
||||
"""
|
||||
num_pages = remote_size / self.tree.LIST_OBJECT_PAGE_SIZE
|
||||
if num_pages < 256 / self.tree.JOBS:
|
||||
# Fetching prefixes in parallel requires at least 255 more
|
||||
# requests, for small enough remotes it will be faster to fetch
|
||||
# entire cache without splitting it into prefixes.
|
||||
#
|
||||
# NOTE: this ends up re-fetching hashes that were already
|
||||
# fetched during remote size estimation
|
||||
traverse_prefixes = [None]
|
||||
initial = 0
|
||||
else:
|
||||
yield from remote_hashes
|
||||
initial = len(remote_hashes)
|
||||
traverse_prefixes = [f"{i:02x}" for i in range(1, 256)]
|
||||
if self.tree.TRAVERSE_PREFIX_LEN > 2:
|
||||
traverse_prefixes += [
|
||||
"{0:0{1}x}".format(i, self.tree.TRAVERSE_PREFIX_LEN)
|
||||
for i in range(
|
||||
1, pow(16, self.tree.TRAVERSE_PREFIX_LEN - 2)
|
||||
)
|
||||
]
|
||||
with Tqdm(
|
||||
desc="Querying "
|
||||
+ (f"cache in '{name}'" if name else "remote cache"),
|
||||
total=remote_size,
|
||||
initial=initial,
|
||||
unit="file",
|
||||
) as pbar:
|
||||
|
||||
def list_with_update(prefix):
|
||||
return list(
|
||||
self.list_hashes(
|
||||
prefix=prefix, progress_callback=pbar.update
|
||||
)
|
||||
)
|
||||
|
||||
with ThreadPoolExecutor(
|
||||
max_workers=jobs or self.tree.JOBS
|
||||
) as executor:
|
||||
in_remote = executor.map(list_with_update, traverse_prefixes,)
|
||||
yield from itertools.chain.from_iterable(in_remote)
|
||||
|
||||
def all(self, jobs=None, name=None):
|
||||
"""Iterate over all hashes in this tree.
|
||||
|
||||
Hashes will be fetched in parallel threads according to prefix
|
||||
(except for small remotes) and a progress bar will be displayed.
|
||||
"""
|
||||
logger.debug(
|
||||
"Fetching all hashes from '{}'".format(
|
||||
name if name else "remote cache"
|
||||
)
|
||||
)
|
||||
|
||||
if not self.tree.CAN_TRAVERSE:
|
||||
return self.list_hashes()
|
||||
|
||||
remote_size, remote_hashes = self._estimate_remote_size(name=name)
|
||||
return self.list_hashes_traverse(
|
||||
remote_size, remote_hashes, jobs, name
|
||||
)
|
||||
|
||||
def _remove_unpacked_dir(self, hash_):
|
||||
pass
|
||||
|
||||
def gc(self, used, jobs=None):
|
||||
removed = False
|
||||
# hashes must be sorted to ensure we always remove .dir files first
|
||||
for hash_ in sorted(
|
||||
self.all(jobs, str(self.tree.path_info)),
|
||||
key=self.tree.is_dir_hash,
|
||||
reverse=True,
|
||||
):
|
||||
if hash_ in used:
|
||||
continue
|
||||
path_info = self.tree.hash_to_path_info(hash_)
|
||||
if self.tree.is_dir_hash(hash_):
|
||||
# backward compatibility
|
||||
# pylint: disable=protected-access
|
||||
self._remove_unpacked_dir(hash_)
|
||||
self.tree.remove(path_info)
|
||||
removed = True
|
||||
|
||||
return removed
|
||||
|
||||
def list_hashes_exists(self, hashes, jobs=None, name=None):
|
||||
"""Return list of the specified hashes which exist in this tree.
|
||||
Hashes will be queried individually.
|
||||
"""
|
||||
logger.debug(
|
||||
"Querying {} hashes via object_exists".format(len(hashes))
|
||||
)
|
||||
with Tqdm(
|
||||
desc="Querying "
|
||||
+ ("cache in " + name if name else "remote cache"),
|
||||
total=len(hashes),
|
||||
unit="file",
|
||||
) as pbar:
|
||||
|
||||
def exists_with_progress(path_info):
|
||||
ret = self.tree.exists(path_info)
|
||||
pbar.update_msg(str(path_info))
|
||||
return ret
|
||||
|
||||
with ThreadPoolExecutor(
|
||||
max_workers=jobs or self.tree.JOBS
|
||||
) as executor:
|
||||
path_infos = map(self.tree.hash_to_path_info, hashes)
|
||||
in_remote = executor.map(exists_with_progress, path_infos)
|
||||
ret = list(itertools.compress(hashes, in_remote))
|
||||
return ret
|
||||
|
||||
def hashes_exist(self, hashes, jobs=None, name=None):
|
||||
"""Check if the given hashes are stored in the remote.
|
||||
|
||||
There are two ways of performing this check:
|
||||
|
||||
- Traverse method: Get a list of all the files in the remote
|
||||
(traversing the cache directory) and compare it with
|
||||
the given hashes. Cache entries will be retrieved in parallel
|
||||
threads according to prefix (i.e. entries starting with, "00...",
|
||||
"01...", and so on) and a progress bar will be displayed.
|
||||
|
||||
- Exists method: For each given hash, run the `exists`
|
||||
method and filter the hashes that aren't on the remote.
|
||||
This is done in parallel threads.
|
||||
It also shows a progress bar when performing the check.
|
||||
|
||||
The reason for such an odd logic is that most of the remotes
|
||||
take much shorter time to just retrieve everything they have under
|
||||
a certain prefix (e.g. s3, gs, ssh, hdfs). Other remotes that can
|
||||
check if particular file exists much quicker, use their own
|
||||
implementation of hashes_exist (see ssh, local).
|
||||
|
||||
Which method to use will be automatically determined after estimating
|
||||
the size of the remote cache, and comparing the estimated size with
|
||||
len(hashes). To estimate the size of the remote cache, we fetch
|
||||
a small subset of cache entries (i.e. entries starting with "00...").
|
||||
Based on the number of entries in that subset, the size of the full
|
||||
cache can be estimated, since the cache is evenly distributed according
|
||||
to hash.
|
||||
|
||||
Returns:
|
||||
A list with hashes that were found in the remote
|
||||
"""
|
||||
# Remotes which do not use traverse prefix should override
|
||||
# hashes_exist() (see ssh, local)
|
||||
assert self.tree.TRAVERSE_PREFIX_LEN >= 2
|
||||
|
||||
hashes = set(hashes)
|
||||
if len(hashes) == 1 or not self.tree.CAN_TRAVERSE:
|
||||
remote_hashes = self.list_hashes_exists(hashes, jobs, name)
|
||||
return remote_hashes
|
||||
|
||||
# Max remote size allowed for us to use traverse method
|
||||
remote_size, remote_hashes = self._estimate_remote_size(hashes, name)
|
||||
|
||||
traverse_pages = remote_size / self.tree.LIST_OBJECT_PAGE_SIZE
|
||||
# For sufficiently large remotes, traverse must be weighted to account
|
||||
# for performance overhead from large lists/sets.
|
||||
# From testing with S3, for remotes with 1M+ files, object_exists is
|
||||
# faster until len(hashes) is at least 10k~100k
|
||||
if remote_size > self.tree.TRAVERSE_THRESHOLD_SIZE:
|
||||
traverse_weight = (
|
||||
traverse_pages * self.tree.TRAVERSE_WEIGHT_MULTIPLIER
|
||||
)
|
||||
else:
|
||||
traverse_weight = traverse_pages
|
||||
if len(hashes) < traverse_weight:
|
||||
logger.debug(
|
||||
"Large remote ('{}' hashes < '{}' traverse weight), "
|
||||
"using object_exists for remaining hashes".format(
|
||||
len(hashes), traverse_weight
|
||||
)
|
||||
)
|
||||
return list(hashes & remote_hashes) + self.list_hashes_exists(
|
||||
hashes - remote_hashes, jobs, name
|
||||
)
|
||||
|
||||
logger.debug("Querying '{}' hashes via traverse".format(len(hashes)))
|
||||
remote_hashes = set(
|
||||
self.list_hashes_traverse(remote_size, remote_hashes, jobs, name)
|
||||
)
|
||||
return list(hashes & set(remote_hashes))
|
||||
Vendored
+91
@@ -0,0 +1,91 @@
|
||||
import logging
|
||||
import os
|
||||
|
||||
from funcy import cached_property
|
||||
|
||||
from dvc.hash_info import HashInfo
|
||||
from dvc.path_info import PathInfo
|
||||
from dvc.progress import Tqdm
|
||||
|
||||
from ..tree.local import LocalTree
|
||||
from ..utils.fs import walk_files
|
||||
from .base import CloudCache
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
class LocalCache(CloudCache):
|
||||
DEFAULT_CACHE_TYPES = ["reflink", "copy"]
|
||||
CACHE_MODE = LocalTree.CACHE_MODE
|
||||
UNPACKED_DIR_SUFFIX = ".unpacked"
|
||||
|
||||
def __init__(self, tree):
|
||||
super().__init__(tree)
|
||||
self.cache_dir = tree.config.get("url")
|
||||
|
||||
@property
|
||||
def cache_dir(self):
|
||||
return self.tree.path_info.fspath if self.tree.path_info else None
|
||||
|
||||
@cache_dir.setter
|
||||
def cache_dir(self, value):
|
||||
self.tree.path_info = PathInfo(value) if value else None
|
||||
|
||||
@cached_property
|
||||
def cache_path(self):
|
||||
return os.path.abspath(self.cache_dir)
|
||||
|
||||
def hash_to_path(self, hash_):
|
||||
# NOTE: `self.cache_path` is already normalized so we can simply use
|
||||
# `os.sep` instead of `os.path.join`. This results in this helper
|
||||
# being ~5.5 times faster.
|
||||
return f"{self.cache_path}{os.sep}{hash_[0:2]}{os.sep}{hash_[2:]}"
|
||||
|
||||
def hashes_exist(
|
||||
self, hashes, jobs=None, name=None
|
||||
): # pylint: disable=unused-argument
|
||||
return [
|
||||
hash_
|
||||
for hash_ in Tqdm(
|
||||
hashes,
|
||||
unit="file",
|
||||
desc="Querying "
|
||||
+ ("cache in " + name if name else "local cache"),
|
||||
)
|
||||
if not self.changed_cache_file(
|
||||
HashInfo(self.tree.PARAM_CHECKSUM, hash_)
|
||||
)
|
||||
]
|
||||
|
||||
def already_cached(self, path_info):
|
||||
assert path_info.scheme in ["", "local"]
|
||||
|
||||
return super().already_cached(path_info)
|
||||
|
||||
def _verify_link(self, path_info, link_type):
|
||||
if link_type == "hardlink" and self.tree.getsize(path_info) == 0:
|
||||
return
|
||||
|
||||
super()._verify_link(path_info, link_type)
|
||||
|
||||
def _list_paths(self, prefix=None, progress_callback=None):
|
||||
assert self.tree.path_info is not None
|
||||
if prefix:
|
||||
path_info = self.tree.path_info / prefix[:2]
|
||||
if not self.tree.exists(path_info):
|
||||
return
|
||||
else:
|
||||
path_info = self.tree.path_info
|
||||
# NOTE: use utils.fs walk_files since tree.walk_files will not follow
|
||||
# symlinks
|
||||
if progress_callback:
|
||||
for path in walk_files(path_info):
|
||||
progress_callback()
|
||||
yield path
|
||||
else:
|
||||
yield from walk_files(path_info)
|
||||
|
||||
def _remove_unpacked_dir(self, hash_):
|
||||
info = self.tree.hash_to_path_info(hash_)
|
||||
path_info = info.with_name(info.name + self.UNPACKED_DIR_SUFFIX)
|
||||
self.tree.remove(path_info)
|
||||
Vendored
+90
@@ -0,0 +1,90 @@
|
||||
import errno
|
||||
import itertools
|
||||
import logging
|
||||
import posixpath
|
||||
from concurrent.futures import ThreadPoolExecutor
|
||||
|
||||
from dvc.progress import Tqdm
|
||||
from dvc.utils import to_chunks
|
||||
|
||||
from .base import CloudCache
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
class SSHCache(CloudCache):
|
||||
def batch_exists(self, path_infos, callback):
|
||||
def _exists(chunk_and_channel):
|
||||
chunk, channel = chunk_and_channel
|
||||
ret = []
|
||||
for path in chunk:
|
||||
try:
|
||||
channel.stat(path)
|
||||
ret.append(True)
|
||||
except OSError as exc:
|
||||
if exc.errno != errno.ENOENT:
|
||||
raise
|
||||
ret.append(False)
|
||||
callback(path)
|
||||
return ret
|
||||
|
||||
with self.tree.ssh(path_infos[0]) as ssh:
|
||||
channels = ssh.open_max_sftp_channels()
|
||||
max_workers = len(channels)
|
||||
|
||||
with ThreadPoolExecutor(max_workers=max_workers) as executor:
|
||||
paths = [path_info.path for path_info in path_infos]
|
||||
chunks = to_chunks(paths, num_chunks=max_workers)
|
||||
chunks_and_channels = zip(chunks, channels)
|
||||
outcome = executor.map(_exists, chunks_and_channels)
|
||||
results = list(itertools.chain.from_iterable(outcome))
|
||||
|
||||
return results
|
||||
|
||||
def hashes_exist(self, hashes, jobs=None, name=None):
|
||||
"""This is older implementation used in remote/base.py
|
||||
We are reusing it in RemoteSSH, because SSH's batch_exists proved to be
|
||||
faster than current approach (relying on exists(path_info)) applied in
|
||||
remote/base.
|
||||
"""
|
||||
if not self.tree.CAN_TRAVERSE:
|
||||
return list(set(hashes) & set(self.all()))
|
||||
|
||||
# possibly prompt for credentials before "Querying" progress output
|
||||
self.tree.ensure_credentials()
|
||||
|
||||
with Tqdm(
|
||||
desc="Querying "
|
||||
+ ("cache in " + name if name else "remote cache"),
|
||||
total=len(hashes),
|
||||
unit="file",
|
||||
) as pbar:
|
||||
|
||||
def exists_with_progress(chunks):
|
||||
return self.batch_exists(chunks, callback=pbar.update_msg)
|
||||
|
||||
with ThreadPoolExecutor(
|
||||
max_workers=jobs or self.tree.JOBS
|
||||
) as executor:
|
||||
path_infos = [self.tree.hash_to_path_info(x) for x in hashes]
|
||||
chunks = to_chunks(path_infos, num_chunks=self.tree.JOBS)
|
||||
results = executor.map(exists_with_progress, chunks)
|
||||
in_remote = itertools.chain.from_iterable(results)
|
||||
ret = list(itertools.compress(hashes, in_remote))
|
||||
return ret
|
||||
|
||||
def _list_paths(self, prefix=None, progress_callback=None):
|
||||
if prefix:
|
||||
root = posixpath.join(self.tree.path_info.path, prefix[:2])
|
||||
else:
|
||||
root = self.tree.path_info.path
|
||||
with self.tree.ssh(self.tree.path_info) as ssh:
|
||||
if prefix and not ssh.exists(root):
|
||||
return
|
||||
# If we simply return an iterator then with above closes instantly
|
||||
if progress_callback:
|
||||
for path in ssh.walk_files(root):
|
||||
progress_callback()
|
||||
yield path
|
||||
else:
|
||||
yield from ssh.walk_files(root)
|
||||
+81
-36
@@ -1,45 +1,49 @@
|
||||
"""DVC command line interface"""
|
||||
import argparse
|
||||
import logging
|
||||
import os
|
||||
import sys
|
||||
|
||||
from .command import (
|
||||
add,
|
||||
cache,
|
||||
check_ignore,
|
||||
checkout,
|
||||
commit,
|
||||
completion,
|
||||
config,
|
||||
daemon,
|
||||
dag,
|
||||
data_sync,
|
||||
destroy,
|
||||
diff,
|
||||
experiments,
|
||||
freeze,
|
||||
gc,
|
||||
get,
|
||||
get_url,
|
||||
git_hook,
|
||||
imp,
|
||||
imp_url,
|
||||
init,
|
||||
install,
|
||||
ls,
|
||||
lock,
|
||||
metrics,
|
||||
move,
|
||||
pipeline,
|
||||
params,
|
||||
plots,
|
||||
remote,
|
||||
remove,
|
||||
repro,
|
||||
root,
|
||||
run,
|
||||
tag,
|
||||
unprotect,
|
||||
update,
|
||||
version,
|
||||
git_hook,
|
||||
)
|
||||
from .command.base import fix_subparsers
|
||||
from .exceptions import DvcParserError
|
||||
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
COMMANDS = [
|
||||
@@ -62,35 +66,56 @@ COMMANDS = [
|
||||
remote,
|
||||
cache,
|
||||
metrics,
|
||||
params,
|
||||
install,
|
||||
root,
|
||||
ls,
|
||||
lock,
|
||||
pipeline,
|
||||
freeze,
|
||||
dag,
|
||||
daemon,
|
||||
commit,
|
||||
tag,
|
||||
completion,
|
||||
diff,
|
||||
version,
|
||||
update,
|
||||
git_hook,
|
||||
plots,
|
||||
experiments,
|
||||
check_ignore,
|
||||
]
|
||||
|
||||
|
||||
def _find_parser(parser, cmd_cls):
|
||||
defaults = parser._defaults # pylint: disable=protected-access
|
||||
if not cmd_cls or cmd_cls == defaults.get("func"):
|
||||
parser.print_help()
|
||||
raise DvcParserError()
|
||||
|
||||
actions = parser._actions # pylint: disable=protected-access
|
||||
for action in actions:
|
||||
if not isinstance(action.choices, dict):
|
||||
# NOTE: we are only interested in subparsers
|
||||
continue
|
||||
for subparser in action.choices.values():
|
||||
_find_parser(subparser, cmd_cls)
|
||||
|
||||
|
||||
class DvcParser(argparse.ArgumentParser):
|
||||
"""Custom parser class for dvc CLI."""
|
||||
|
||||
def error(self, message):
|
||||
"""Custom error method.
|
||||
Args:
|
||||
message (str): error message.
|
||||
|
||||
Raises:
|
||||
dvc.exceptions.DvcParser: dvc parser exception.
|
||||
"""
|
||||
def error(self, message, cmd_cls=None): # pylint: disable=arguments-differ
|
||||
logger.error(message)
|
||||
self.print_help()
|
||||
raise DvcParserError()
|
||||
_find_parser(self, cmd_cls)
|
||||
|
||||
def parse_args(self, args=None, namespace=None):
|
||||
# NOTE: overriding to provide a more granular help message.
|
||||
# E.g. `dvc plots diff --bad-flag` would result in a `dvc plots diff`
|
||||
# help message instead of generic `dvc` usage.
|
||||
args, argv = self.parse_known_args(args, namespace)
|
||||
if argv:
|
||||
msg = "unrecognized arguments: %s"
|
||||
self.error(msg % " ".join(argv), getattr(args, "func", None))
|
||||
return args
|
||||
|
||||
|
||||
class VersionAction(argparse.Action): # pragma: no cover
|
||||
@@ -113,30 +138,30 @@ def get_parent_parser():
|
||||
"""
|
||||
parent_parser = argparse.ArgumentParser(add_help=False)
|
||||
|
||||
log_level_group = parent_parser.add_mutually_exclusive_group()
|
||||
log_level_group.add_argument(
|
||||
"-q", "--quiet", action="store_true", default=False, help="Be quiet."
|
||||
)
|
||||
log_level_group.add_argument(
|
||||
"-v",
|
||||
"--verbose",
|
||||
parent_parser.add_argument(
|
||||
"--cprofile",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Be verbose.",
|
||||
help=argparse.SUPPRESS,
|
||||
)
|
||||
parent_parser.add_argument("--cprofile-dump", help=argparse.SUPPRESS)
|
||||
|
||||
parent_parser.add_argument(
|
||||
"--pdb", action="store_true", default=False, help=argparse.SUPPRESS,
|
||||
)
|
||||
|
||||
log_level_group = parent_parser.add_mutually_exclusive_group()
|
||||
log_level_group.add_argument(
|
||||
"-q", "--quiet", action="count", default=0, help="Be quiet."
|
||||
)
|
||||
log_level_group.add_argument(
|
||||
"-v", "--verbose", action="count", default=0, help="Be verbose."
|
||||
)
|
||||
|
||||
return parent_parser
|
||||
|
||||
|
||||
def parse_args(argv=None):
|
||||
"""Parses CLI arguments.
|
||||
|
||||
Args:
|
||||
argv: optional list of arguments to parse. sys.argv is used by default.
|
||||
|
||||
Raises:
|
||||
dvc.exceptions.DvcParserError: raised for argument parsing errors.
|
||||
"""
|
||||
def get_main_parser():
|
||||
parent_parser = get_parent_parser()
|
||||
|
||||
# Main parser
|
||||
@@ -171,6 +196,14 @@ def parse_args(argv=None):
|
||||
help="Show program's version.",
|
||||
)
|
||||
|
||||
parser.add_argument(
|
||||
"--cd",
|
||||
default=os.path.curdir,
|
||||
metavar="<path>",
|
||||
help="Change to directory before executing.",
|
||||
type=str,
|
||||
)
|
||||
|
||||
# Sub commands
|
||||
subparsers = parser.add_subparsers(
|
||||
title="Available Commands",
|
||||
@@ -184,6 +217,18 @@ def parse_args(argv=None):
|
||||
for cmd in COMMANDS:
|
||||
cmd.add_parser(subparsers, parent_parser)
|
||||
|
||||
args = parser.parse_args(argv)
|
||||
return parser
|
||||
|
||||
|
||||
def parse_args(argv=None):
|
||||
"""Parses CLI arguments.
|
||||
|
||||
Args:
|
||||
argv: optional list of arguments to parse. sys.argv is used by default.
|
||||
|
||||
Raises:
|
||||
dvc.exceptions.DvcParserError: raised for argument parsing errors.
|
||||
"""
|
||||
parser = get_main_parser()
|
||||
args = parser.parse_args(argv)
|
||||
return args
|
||||
|
||||
+30
-5
@@ -1,7 +1,8 @@
|
||||
import argparse
|
||||
import logging
|
||||
|
||||
from dvc.command.base import append_doc_link, CmdBase
|
||||
from dvc.command import completion
|
||||
from dvc.command.base import CmdBase, append_doc_link
|
||||
from dvc.exceptions import DvcException, RecursiveAddingWhileUsingFilename
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
@@ -18,6 +19,9 @@ class CmdAdd(CmdBase):
|
||||
recursive=self.args.recursive,
|
||||
no_commit=self.args.no_commit,
|
||||
fname=self.args.file,
|
||||
external=self.args.external,
|
||||
glob=self.args.glob,
|
||||
desc=self.args.desc,
|
||||
)
|
||||
|
||||
except DvcException:
|
||||
@@ -50,11 +54,32 @@ def add_parser(subparsers, parent_parser):
|
||||
help="Don't put files/directories into cache.",
|
||||
)
|
||||
parser.add_argument(
|
||||
"-f",
|
||||
"--file",
|
||||
help="Specify name of the DVC-file this command will generate.",
|
||||
"--external",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Allow targets that are outside of the DVC repository.",
|
||||
)
|
||||
parser.add_argument(
|
||||
"targets", nargs="+", help="Input files/directories to add."
|
||||
"--glob",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Allows targets containing shell-style wildcards.",
|
||||
)
|
||||
parser.add_argument(
|
||||
"--file",
|
||||
help="Specify name of the DVC-file this command will generate.",
|
||||
metavar="<filename>",
|
||||
)
|
||||
parser.add_argument(
|
||||
"--desc",
|
||||
type=str,
|
||||
metavar="<text>",
|
||||
help=(
|
||||
"User description of the data (optional). "
|
||||
"This doesn't affect any DVC operations."
|
||||
),
|
||||
)
|
||||
parser.add_argument(
|
||||
"targets", nargs="+", help="Input files/directories to add.",
|
||||
).complete = completion.FILE
|
||||
parser.set_defaults(func=CmdAdd)
|
||||
|
||||
+21
-14
@@ -1,5 +1,6 @@
|
||||
import logging
|
||||
|
||||
import os
|
||||
from abc import ABC, abstractmethod
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
@@ -27,32 +28,38 @@ def append_doc_link(help_message, path):
|
||||
)
|
||||
|
||||
|
||||
class CmdBase(object):
|
||||
class CmdBase(ABC):
|
||||
UNINITIALIZED = False
|
||||
|
||||
def __init__(self, args):
|
||||
from dvc.repo import Repo
|
||||
from dvc.updater import Updater
|
||||
|
||||
self.repo = Repo()
|
||||
os.chdir(args.cd)
|
||||
|
||||
self.repo = Repo(uninitialized=self.UNINITIALIZED)
|
||||
self.config = self.repo.config
|
||||
self.args = args
|
||||
hardlink_lock = self.config["core"].get("hardlink_lock", False)
|
||||
updater = Updater(self.repo.dvc_dir, hardlink_lock=hardlink_lock)
|
||||
updater.check()
|
||||
if self.repo.tmp_dir:
|
||||
hardlink_lock = self.config["core"].get("hardlink_lock", False)
|
||||
updater = Updater(self.repo.tmp_dir, hardlink_lock=hardlink_lock)
|
||||
updater.check()
|
||||
|
||||
@property
|
||||
def default_targets(self):
|
||||
"""Default targets for `dvc repro` and `dvc pipeline`."""
|
||||
from dvc.stage import Stage
|
||||
"""Default targets for `dvc repro`."""
|
||||
from dvc.dvcfile import PIPELINE_FILE
|
||||
|
||||
msg = "assuming default target '{}'.".format(Stage.STAGE_FILE)
|
||||
logger.warning(msg)
|
||||
return [Stage.STAGE_FILE]
|
||||
logger.debug(f"assuming default target '{PIPELINE_FILE}'.")
|
||||
return [PIPELINE_FILE]
|
||||
|
||||
# Abstract methods that have to be implemented by any inheritance class
|
||||
@abstractmethod
|
||||
def run(self):
|
||||
raise NotImplementedError
|
||||
pass
|
||||
|
||||
|
||||
class CmdBaseNoRepo(CmdBase):
|
||||
def __init__(self, args):
|
||||
def __init__(self, args): # pylint: disable=super-init-not-called
|
||||
self.args = args
|
||||
|
||||
os.chdir(args.cd)
|
||||
|
||||
+11
-2
@@ -1,11 +1,18 @@
|
||||
import argparse
|
||||
import logging
|
||||
|
||||
from dvc.command import completion
|
||||
from dvc.command.base import append_doc_link, fix_subparsers
|
||||
from dvc.command.config import CmdConfig
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
class CmdCacheDir(CmdConfig):
|
||||
def run(self):
|
||||
if self.args.value is None and not self.args.unset:
|
||||
logger.info(self.config["cache"]["dir"])
|
||||
return 0
|
||||
with self.config.edit(level=self.args.level) as edit:
|
||||
edit["cache"]["dir"] = self.args.value
|
||||
return 0
|
||||
@@ -54,6 +61,8 @@ def add_parser(subparsers, parent_parser):
|
||||
"value",
|
||||
help="Path to cache directory. Relative paths are resolved relative "
|
||||
"to the current directory and saved to config relative to the "
|
||||
"config file location.",
|
||||
)
|
||||
"config file location. If no path is provided, it returns the "
|
||||
"current cache directory.",
|
||||
nargs="?",
|
||||
).complete = completion.DIR
|
||||
cache_dir_parser.set_defaults(func=CmdCacheDir)
|
||||
|
||||
@@ -0,0 +1,126 @@
|
||||
import argparse
|
||||
import logging
|
||||
|
||||
from dvc.command import completion
|
||||
from dvc.command.base import CmdBase, append_doc_link
|
||||
from dvc.exceptions import DvcException
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
class CmdCheckIgnore(CmdBase):
|
||||
def __init__(self, args):
|
||||
super().__init__(args)
|
||||
self.ignore_filter = self.repo.tree.dvcignore
|
||||
|
||||
def _show_results(self, result):
|
||||
if not result.match and not self.args.non_matching:
|
||||
return
|
||||
|
||||
if self.args.details:
|
||||
patterns = result.patterns
|
||||
if not self.args.all:
|
||||
patterns = patterns[-1:]
|
||||
|
||||
for pattern in patterns:
|
||||
logger.info("{}\t{}".format(pattern, result.file))
|
||||
else:
|
||||
logger.info(result.file)
|
||||
|
||||
def _check_one_file(self, target):
|
||||
result = self.ignore_filter.check_ignore(target)
|
||||
self._show_results(result)
|
||||
if result.match:
|
||||
return 0
|
||||
return 1
|
||||
|
||||
def _interactive_mode(self):
|
||||
ret = 1
|
||||
while True:
|
||||
try:
|
||||
target = input()
|
||||
except (KeyboardInterrupt, EOFError):
|
||||
break
|
||||
if target == "":
|
||||
break
|
||||
if not self._check_one_file(target):
|
||||
ret = 0
|
||||
return ret
|
||||
|
||||
def _normal_mode(self):
|
||||
ret = 1
|
||||
for target in self.args.targets:
|
||||
if not self._check_one_file(target):
|
||||
ret = 0
|
||||
return ret
|
||||
|
||||
def _check_args(self):
|
||||
if not self.args.stdin and not self.args.targets:
|
||||
raise DvcException("`targets` or `--stdin` needed")
|
||||
|
||||
if self.args.stdin and self.args.targets:
|
||||
raise DvcException("cannot have both `targets` and `--stdin`")
|
||||
|
||||
if self.args.non_matching and not self.args.details:
|
||||
raise DvcException(
|
||||
"`--non-matching` is only valid with `--details`"
|
||||
)
|
||||
|
||||
if self.args.all and not self.args.details:
|
||||
raise DvcException("`--all` is only valid with `--details`")
|
||||
|
||||
if self.args.quiet and self.args.details:
|
||||
raise DvcException("cannot use both `--details` and `--quiet`")
|
||||
|
||||
def run(self):
|
||||
self._check_args()
|
||||
if self.args.stdin:
|
||||
return self._interactive_mode()
|
||||
return self._normal_mode()
|
||||
|
||||
|
||||
def add_parser(subparsers, parent_parser):
|
||||
ADD_HELP = (
|
||||
"Check whether files or directories are excluded due to `.dvcignore`."
|
||||
)
|
||||
|
||||
parser = subparsers.add_parser(
|
||||
"check-ignore",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(ADD_HELP, "check-ignore"),
|
||||
help=ADD_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
parser.add_argument(
|
||||
"-d",
|
||||
"--details",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Show the exclude patterns along with each target path.",
|
||||
)
|
||||
parser.add_argument(
|
||||
"-a",
|
||||
"--all",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Include the target paths which don’t match any pattern "
|
||||
"in the `--details` list.",
|
||||
)
|
||||
parser.add_argument(
|
||||
"-n",
|
||||
"--non-matching",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Include the target paths which don’t match any pattern "
|
||||
"in the `--details` list.",
|
||||
)
|
||||
parser.add_argument(
|
||||
"--stdin",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Read paths from standard input instead of providing `targets`.",
|
||||
)
|
||||
parser.add_argument(
|
||||
"targets", nargs="*", help="File or directory paths to check",
|
||||
).complete = completion.FILE
|
||||
parser.set_defaults(func=CmdCheckIgnore)
|
||||
+14
-30
@@ -1,39 +1,17 @@
|
||||
import argparse
|
||||
import logging
|
||||
import operator
|
||||
|
||||
import colorama
|
||||
|
||||
from dvc.command.base import append_doc_link
|
||||
from dvc.command.base import CmdBase
|
||||
from dvc.command import completion
|
||||
from dvc.command.base import CmdBase, append_doc_link
|
||||
from dvc.exceptions import CheckoutError
|
||||
from dvc.utils.humanize import get_summary
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
def _human_join(words):
|
||||
words = list(words)
|
||||
if not words:
|
||||
return ""
|
||||
|
||||
return (
|
||||
"{before} and {after}".format(
|
||||
before=", ".join(words[:-1]), after=words[-1],
|
||||
)
|
||||
if len(words) > 1
|
||||
else words[0]
|
||||
)
|
||||
|
||||
|
||||
def log_summary(stats):
|
||||
states = ("added", "deleted", "modified")
|
||||
summary = (
|
||||
"{} {}".format(len(stats[state]), state)
|
||||
for state in states
|
||||
if stats.get(state)
|
||||
)
|
||||
logger.info(_human_join(summary) or "No changes.")
|
||||
|
||||
|
||||
def log_changes(stats):
|
||||
colors = [
|
||||
("modified", colorama.Fore.YELLOW,),
|
||||
@@ -75,7 +53,11 @@ class CmdCheckout(CmdBase):
|
||||
stats = exc.stats
|
||||
|
||||
if self.args.summary:
|
||||
log_summary(stats)
|
||||
default_message = "No changes."
|
||||
msg = get_summary(
|
||||
sorted(stats.items(), key=operator.itemgetter(0))
|
||||
)
|
||||
logger.info(msg or default_message)
|
||||
else:
|
||||
log_changes(stats)
|
||||
|
||||
@@ -130,7 +112,9 @@ def add_parser(subparsers, parent_parser):
|
||||
checkout_parser.add_argument(
|
||||
"targets",
|
||||
nargs="*",
|
||||
help="DVC-files to checkout. Optional. "
|
||||
"(Finds all DVC-files in the workspace by default.)",
|
||||
)
|
||||
help=(
|
||||
"Limit command scope to these tracked files/directories, "
|
||||
".dvc files, or stage names."
|
||||
),
|
||||
).complete = completion.DVC_FILE
|
||||
checkout_parser.set_defaults(func=CmdCheckout)
|
||||
|
||||
@@ -1,11 +1,10 @@
|
||||
import argparse
|
||||
import logging
|
||||
|
||||
from dvc.command.base import append_doc_link
|
||||
from dvc.command.base import CmdBase
|
||||
from dvc.command import completion
|
||||
from dvc.command.base import CmdBase, append_doc_link
|
||||
from dvc.exceptions import DvcException
|
||||
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
@@ -68,5 +67,5 @@ def add_parser(subparsers, parent_parser):
|
||||
nargs="*",
|
||||
help="DVC-files to commit. Optional. "
|
||||
"(Finds all DVC-files in the workspace by default.)",
|
||||
)
|
||||
).complete = completion.DVC_FILE
|
||||
commit_parser.set_defaults(func=CmdCommit)
|
||||
|
||||
@@ -0,0 +1,57 @@
|
||||
import argparse
|
||||
import logging
|
||||
|
||||
import shtab
|
||||
|
||||
from dvc.command.base import CmdBaseNoRepo, append_doc_link
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
FILE = shtab.FILE
|
||||
DIR = shtab.DIRECTORY
|
||||
DVC_FILE = {
|
||||
"bash": "_dvc_compgen_DVCFiles",
|
||||
"zsh": "_files -g '(*?.dvc|Dvcfile|dvc.yaml)'",
|
||||
}
|
||||
PREAMBLE = {
|
||||
"bash": """
|
||||
# $1=COMP_WORDS[1]
|
||||
_dvc_compgen_DVCFiles() {
|
||||
compgen -d -S '/' -- $1 # recurse into subdirs
|
||||
compgen -f -X '!*?.dvc' -- $1
|
||||
compgen -f -X '!*Dvcfile' -- $1
|
||||
compgen -f -X '!*dvc.yaml' -- $1
|
||||
}
|
||||
""",
|
||||
"zsh": "",
|
||||
}
|
||||
|
||||
|
||||
class CmdCompletion(CmdBaseNoRepo):
|
||||
def run(self):
|
||||
from dvc.cli import get_main_parser
|
||||
|
||||
parser = get_main_parser()
|
||||
shell = self.args.shell
|
||||
script = shtab.complete(parser, shell=shell, preamble=PREAMBLE)
|
||||
print(script)
|
||||
return 0
|
||||
|
||||
|
||||
def add_parser(subparsers, parent_parser):
|
||||
COMPLETION_HELP = "Generate shell tab completion."
|
||||
COMPLETION_DESCRIPTION = "Prints out shell tab completion scripts."
|
||||
completion_parser = subparsers.add_parser(
|
||||
"completion",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(COMPLETION_DESCRIPTION, "completion"),
|
||||
help=COMPLETION_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
completion_parser.add_argument(
|
||||
"-s",
|
||||
"--shell",
|
||||
help="Shell syntax for completions.",
|
||||
default="bash",
|
||||
choices=["bash", "zsh"],
|
||||
)
|
||||
completion_parser.set_defaults(func=CmdCompletion)
|
||||
@@ -1,7 +1,7 @@
|
||||
import argparse
|
||||
import logging
|
||||
|
||||
from dvc.command.base import append_doc_link, CmdBaseNoRepo
|
||||
from dvc.command.base import CmdBaseNoRepo, append_doc_link
|
||||
from dvc.config import Config, ConfigError
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
@@ -50,21 +50,22 @@ class CmdConfig(CmdBaseNoRepo):
|
||||
|
||||
|
||||
parent_config_parser = argparse.ArgumentParser(add_help=False)
|
||||
parent_config_parser.add_argument(
|
||||
level_group = parent_config_parser.add_mutually_exclusive_group()
|
||||
level_group.add_argument(
|
||||
"--global",
|
||||
dest="level",
|
||||
action="store_const",
|
||||
const="global",
|
||||
help="Use global config.",
|
||||
)
|
||||
parent_config_parser.add_argument(
|
||||
level_group.add_argument(
|
||||
"--system",
|
||||
dest="level",
|
||||
action="store_const",
|
||||
const="system",
|
||||
help="Use system config.",
|
||||
)
|
||||
parent_config_parser.add_argument(
|
||||
level_group.add_argument(
|
||||
"--local",
|
||||
dest="level",
|
||||
action="store_const",
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
from dvc.command.base import CmdBaseNoRepo
|
||||
from dvc.command.base import fix_subparsers
|
||||
from dvc.command import completion
|
||||
from dvc.command.base import CmdBaseNoRepo, fix_subparsers
|
||||
|
||||
|
||||
class CmdDaemonBase(CmdBaseNoRepo):
|
||||
@@ -9,15 +9,17 @@ class CmdDaemonBase(CmdBaseNoRepo):
|
||||
class CmdDaemonUpdater(CmdDaemonBase):
|
||||
def run(self):
|
||||
import os
|
||||
from dvc.repo import Repo
|
||||
|
||||
from dvc.config import Config
|
||||
from dvc.repo import Repo
|
||||
from dvc.updater import Updater
|
||||
|
||||
root_dir = Repo.find_root()
|
||||
dvc_dir = os.path.join(root_dir, Repo.DVC_DIR)
|
||||
tmp_dir = os.path.join(dvc_dir, "tmp")
|
||||
config = Config(dvc_dir, validate=False)
|
||||
hardlink_lock = config.get("core", {}).get("hardlink_lock", False)
|
||||
updater = Updater(dvc_dir, hardlink_lock=hardlink_lock)
|
||||
updater = Updater(tmp_dir, hardlink_lock=hardlink_lock)
|
||||
updater.fetch(detach=False)
|
||||
|
||||
return 0
|
||||
@@ -64,5 +66,7 @@ def add_parser(subparsers, parent_parser):
|
||||
description=DAEMON_ANALYTICS_HELP,
|
||||
help=DAEMON_ANALYTICS_HELP,
|
||||
)
|
||||
daemon_analytics_parser.add_argument("target", help="Analytics file.")
|
||||
daemon_analytics_parser.add_argument(
|
||||
"target", help="Analytics file.",
|
||||
).complete = completion.FILE
|
||||
daemon_analytics_parser.set_defaults(func=CmdDaemonAnalytics)
|
||||
|
||||
@@ -0,0 +1,149 @@
|
||||
import argparse
|
||||
import logging
|
||||
|
||||
from dvc.command.base import CmdBase, append_doc_link
|
||||
from dvc.stage import Stage
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
def _show_ascii(G):
|
||||
from dvc.dagascii import draw
|
||||
from dvc.repo.graph import get_pipelines
|
||||
|
||||
pipelines = get_pipelines(G)
|
||||
|
||||
ret = []
|
||||
for pipeline in pipelines:
|
||||
ret.append(draw(pipeline.nodes, pipeline.edges))
|
||||
|
||||
return "\n".join(ret)
|
||||
|
||||
|
||||
def _show_dot(G):
|
||||
import io
|
||||
|
||||
from networkx.drawing.nx_pydot import write_dot
|
||||
|
||||
dot_file = io.StringIO()
|
||||
write_dot(G, dot_file)
|
||||
return dot_file.getvalue()
|
||||
|
||||
|
||||
def _collect_targets(repo, target, outs):
|
||||
if not target:
|
||||
return []
|
||||
|
||||
pairs = repo.stage.collect_granular(target)
|
||||
if not outs:
|
||||
return [stage.addressing for stage, _ in pairs]
|
||||
|
||||
targets = []
|
||||
for stage, info in pairs:
|
||||
if not info:
|
||||
targets.extend([str(out) for out in stage.outs])
|
||||
continue
|
||||
|
||||
for out in repo.outs_trie.itervalues(prefix=info.parts): # noqa: B301
|
||||
targets.extend(str(out))
|
||||
|
||||
return targets
|
||||
|
||||
|
||||
def _transform(repo, outs):
|
||||
import networkx as nx
|
||||
|
||||
def _relabel(node) -> str:
|
||||
return node.addressing if isinstance(node, Stage) else str(node)
|
||||
|
||||
G = repo.outs_graph if outs else repo.graph
|
||||
return nx.relabel_nodes(G, _relabel, copy=True)
|
||||
|
||||
|
||||
def _filter(G, targets, full):
|
||||
import networkx as nx
|
||||
|
||||
if not targets:
|
||||
return G
|
||||
|
||||
H = G.copy()
|
||||
if not full:
|
||||
descendants = set()
|
||||
for target in targets:
|
||||
descendants.update(nx.descendants(G, target))
|
||||
descendants.add(target)
|
||||
H.remove_nodes_from(set(G.nodes()) - descendants)
|
||||
|
||||
undirected = H.to_undirected()
|
||||
connected = set()
|
||||
for target in targets:
|
||||
connected.update(nx.node_connected_component(undirected, target))
|
||||
|
||||
H.remove_nodes_from(set(H.nodes()) - connected)
|
||||
|
||||
return H
|
||||
|
||||
|
||||
def _build(repo, target=None, full=False, outs=False):
|
||||
targets = _collect_targets(repo, target, outs)
|
||||
G = _transform(repo, outs)
|
||||
return _filter(G, targets, full)
|
||||
|
||||
|
||||
class CmdDAG(CmdBase):
|
||||
def run(self):
|
||||
G = _build(
|
||||
self.repo,
|
||||
target=self.args.target,
|
||||
full=self.args.full,
|
||||
outs=self.args.outs,
|
||||
)
|
||||
|
||||
if self.args.dot:
|
||||
logger.info(_show_dot(G))
|
||||
else:
|
||||
from dvc.utils.pager import pager
|
||||
|
||||
pager(_show_ascii(G))
|
||||
|
||||
return 0
|
||||
|
||||
|
||||
def add_parser(subparsers, parent_parser):
|
||||
DAG_HELP = "Visualize DVC project DAG."
|
||||
dag_parser = subparsers.add_parser(
|
||||
"dag",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(DAG_HELP, "dag"),
|
||||
help=DAG_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
dag_parser.add_argument(
|
||||
"--dot",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Print DAG with .dot format.",
|
||||
)
|
||||
dag_parser.add_argument(
|
||||
"--full",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help=(
|
||||
"Show full DAG that the target belongs too, instead of "
|
||||
"showing DAG consisting only of ancestors."
|
||||
),
|
||||
)
|
||||
dag_parser.add_argument(
|
||||
"-o",
|
||||
"--outs",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Print output files instead of stages.",
|
||||
)
|
||||
dag_parser.add_argument(
|
||||
"target",
|
||||
nargs="?",
|
||||
help="Stage or output to show pipeline for (optional). "
|
||||
"Finds all stages in the workspace by default.",
|
||||
)
|
||||
dag_parser.set_defaults(func=CmdDAG)
|
||||
+108
-30
@@ -1,23 +1,26 @@
|
||||
import argparse
|
||||
import logging
|
||||
|
||||
from dvc.command.base import append_doc_link
|
||||
from dvc.command.base import CmdBase
|
||||
from dvc.command.checkout import log_summary
|
||||
from dvc.exceptions import DvcException, CheckoutError
|
||||
|
||||
from dvc.command import completion
|
||||
from dvc.command.base import CmdBase, append_doc_link
|
||||
from dvc.command.checkout import log_changes
|
||||
from dvc.exceptions import CheckoutError, DvcException
|
||||
from dvc.utils.humanize import get_summary
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
class CmdDataBase(CmdBase):
|
||||
@classmethod
|
||||
def check_up_to_date(cls, processed_files_count):
|
||||
if processed_files_count == 0:
|
||||
logger.info("Everything is up to date.")
|
||||
def log_summary(self, stats):
|
||||
default_msg = "Everything is up to date."
|
||||
logger.info(get_summary(stats.items()) or default_msg)
|
||||
|
||||
|
||||
class CmdDataPull(CmdDataBase):
|
||||
def log_summary(self, stats):
|
||||
log_changes(stats)
|
||||
super().log_summary(stats)
|
||||
|
||||
def run(self):
|
||||
try:
|
||||
stats = self.repo.pull(
|
||||
@@ -26,17 +29,18 @@ class CmdDataPull(CmdDataBase):
|
||||
remote=self.args.remote,
|
||||
all_branches=self.args.all_branches,
|
||||
all_tags=self.args.all_tags,
|
||||
all_commits=self.args.all_commits,
|
||||
with_deps=self.args.with_deps,
|
||||
force=self.args.force,
|
||||
recursive=self.args.recursive,
|
||||
run_cache=self.args.run_cache,
|
||||
)
|
||||
log_summary(stats)
|
||||
self.log_summary(stats)
|
||||
except (CheckoutError, DvcException) as exc:
|
||||
log_summary(getattr(exc, "stats", {}))
|
||||
self.log_summary(getattr(exc, "stats", {}))
|
||||
logger.exception("failed to pull data from the cloud")
|
||||
return 1
|
||||
|
||||
self.check_up_to_date(stats["downloaded"])
|
||||
return 0
|
||||
|
||||
|
||||
@@ -49,13 +53,15 @@ class CmdDataPush(CmdDataBase):
|
||||
remote=self.args.remote,
|
||||
all_branches=self.args.all_branches,
|
||||
all_tags=self.args.all_tags,
|
||||
all_commits=self.args.all_commits,
|
||||
with_deps=self.args.with_deps,
|
||||
recursive=self.args.recursive,
|
||||
run_cache=self.args.run_cache,
|
||||
)
|
||||
self.log_summary({"pushed": processed_files_count})
|
||||
except DvcException:
|
||||
logger.exception("failed to push data to the cloud")
|
||||
return 1
|
||||
self.check_up_to_date(processed_files_count)
|
||||
return 0
|
||||
|
||||
|
||||
@@ -68,13 +74,15 @@ class CmdDataFetch(CmdDataBase):
|
||||
remote=self.args.remote,
|
||||
all_branches=self.args.all_branches,
|
||||
all_tags=self.args.all_tags,
|
||||
all_commits=self.args.all_commits,
|
||||
with_deps=self.args.with_deps,
|
||||
recursive=self.args.recursive,
|
||||
run_cache=self.args.run_cache,
|
||||
)
|
||||
self.log_summary({"fetched": processed_files_count})
|
||||
except DvcException:
|
||||
logger.exception("failed to fetch data from the cloud")
|
||||
return 1
|
||||
self.check_up_to_date(processed_files_count)
|
||||
return 0
|
||||
|
||||
|
||||
@@ -82,20 +90,30 @@ def shared_parent_parser():
|
||||
from dvc.cli import get_parent_parser
|
||||
|
||||
# Parent parser used in pull/push/status
|
||||
shared_parent_parser = argparse.ArgumentParser(
|
||||
parent_parser = argparse.ArgumentParser(
|
||||
add_help=False, parents=[get_parent_parser()]
|
||||
)
|
||||
shared_parent_parser.add_argument(
|
||||
"-j", "--jobs", type=int, help="Number of jobs to run simultaneously."
|
||||
parent_parser.add_argument(
|
||||
"-j",
|
||||
"--jobs",
|
||||
type=int,
|
||||
help=(
|
||||
"Number of jobs to run simultaneously. "
|
||||
"The default value is 4 * cpu_count(). "
|
||||
"For SSH remotes, the default is 4. "
|
||||
),
|
||||
metavar="<number>",
|
||||
)
|
||||
shared_parent_parser.add_argument(
|
||||
parent_parser.add_argument(
|
||||
"targets",
|
||||
nargs="*",
|
||||
help="Limit command scope to these DVC-files. "
|
||||
"Using -R, directories to search DVC-files in can also be given.",
|
||||
)
|
||||
help=(
|
||||
"Limit command scope to these tracked files/directories, "
|
||||
".dvc files, or stage names."
|
||||
),
|
||||
).complete = completion.DVC_FILE
|
||||
|
||||
return shared_parent_parser
|
||||
return parent_parser
|
||||
|
||||
|
||||
def add_parser(subparsers, _parent_parser):
|
||||
@@ -112,7 +130,7 @@ def add_parser(subparsers, _parent_parser):
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
pull_parser.add_argument(
|
||||
"-r", "--remote", help="Remote repository to pull from."
|
||||
"-r", "--remote", help="Remote storage to pull from", metavar="<name>",
|
||||
)
|
||||
pull_parser.add_argument(
|
||||
"-a",
|
||||
@@ -128,6 +146,12 @@ def add_parser(subparsers, _parent_parser):
|
||||
default=False,
|
||||
help="Fetch cache for all tags.",
|
||||
)
|
||||
pull_parser.add_argument(
|
||||
"--all-commits",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Fetch cache for all commits.",
|
||||
)
|
||||
pull_parser.add_argument(
|
||||
"-f",
|
||||
"--force",
|
||||
@@ -149,6 +173,12 @@ def add_parser(subparsers, _parent_parser):
|
||||
default=False,
|
||||
help="Pull cache for subdirectories of the specified directory.",
|
||||
)
|
||||
pull_parser.add_argument(
|
||||
"--run-cache",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Fetch run history for all stages.",
|
||||
)
|
||||
pull_parser.set_defaults(func=CmdDataPull)
|
||||
|
||||
# Push
|
||||
@@ -162,7 +192,7 @@ def add_parser(subparsers, _parent_parser):
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
push_parser.add_argument(
|
||||
"-r", "--remote", help="Remote repository to push to."
|
||||
"-r", "--remote", help="Remote storage to push to", metavar="<name>",
|
||||
)
|
||||
push_parser.add_argument(
|
||||
"-a",
|
||||
@@ -178,6 +208,12 @@ def add_parser(subparsers, _parent_parser):
|
||||
default=False,
|
||||
help="Push cache for all tags.",
|
||||
)
|
||||
push_parser.add_argument(
|
||||
"--all-commits",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Push cache for all commits.",
|
||||
)
|
||||
push_parser.add_argument(
|
||||
"-d",
|
||||
"--with-deps",
|
||||
@@ -192,13 +228,16 @@ def add_parser(subparsers, _parent_parser):
|
||||
default=False,
|
||||
help="Push cache for subdirectories of specified directory.",
|
||||
)
|
||||
push_parser.add_argument(
|
||||
"--run-cache",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Push run history for all stages.",
|
||||
)
|
||||
push_parser.set_defaults(func=CmdDataPush)
|
||||
|
||||
# Fetch
|
||||
FETCH_HELP = (
|
||||
"Get tracked files or directories from remote storage"
|
||||
" into the cache."
|
||||
)
|
||||
FETCH_HELP = "Download cached files or directories from remote storage."
|
||||
|
||||
fetch_parser = subparsers.add_parser(
|
||||
"fetch",
|
||||
@@ -208,7 +247,10 @@ def add_parser(subparsers, _parent_parser):
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
fetch_parser.add_argument(
|
||||
"-r", "--remote", help="Remote repository to fetch from."
|
||||
"-r",
|
||||
"--remote",
|
||||
help="Remote storage to fetch from",
|
||||
metavar="<name>",
|
||||
)
|
||||
fetch_parser.add_argument(
|
||||
"-a",
|
||||
@@ -224,6 +266,12 @@ def add_parser(subparsers, _parent_parser):
|
||||
default=False,
|
||||
help="Fetch cache for all tags.",
|
||||
)
|
||||
fetch_parser.add_argument(
|
||||
"--all-commits",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Fetch cache for all commits.",
|
||||
)
|
||||
fetch_parser.add_argument(
|
||||
"-d",
|
||||
"--with-deps",
|
||||
@@ -238,6 +286,12 @@ def add_parser(subparsers, _parent_parser):
|
||||
default=False,
|
||||
help="Fetch cache for subdirectories of specified directory.",
|
||||
)
|
||||
fetch_parser.add_argument(
|
||||
"--run-cache",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Fetch run history for all stages.",
|
||||
)
|
||||
fetch_parser.set_defaults(func=CmdDataFetch)
|
||||
|
||||
# Status
|
||||
@@ -271,7 +325,10 @@ def add_parser(subparsers, _parent_parser):
|
||||
help="Show status of a local cache compared to a remote repository.",
|
||||
)
|
||||
status_parser.add_argument(
|
||||
"-r", "--remote", help="Remote repository to compare local cache to."
|
||||
"-r",
|
||||
"--remote",
|
||||
help="Remote storage to compare local cache to",
|
||||
metavar="<name>",
|
||||
)
|
||||
status_parser.add_argument(
|
||||
"-a",
|
||||
@@ -289,6 +346,13 @@ def add_parser(subparsers, _parent_parser):
|
||||
help="Show status of a local cache compared to a remote repository "
|
||||
"for all tags.",
|
||||
)
|
||||
status_parser.add_argument(
|
||||
"--all-commits",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Show status of a local cache compared to a remote repository "
|
||||
"for all commits.",
|
||||
)
|
||||
status_parser.add_argument(
|
||||
"-d",
|
||||
"--with-deps",
|
||||
@@ -296,4 +360,18 @@ def add_parser(subparsers, _parent_parser):
|
||||
default=False,
|
||||
help="Show status for all dependencies of the specified target.",
|
||||
)
|
||||
status_parser.add_argument(
|
||||
"-R",
|
||||
"--recursive",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Show status of all stages in the specified directory.",
|
||||
)
|
||||
status_parser.add_argument(
|
||||
"--show-json",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Show status in JSON format.",
|
||||
)
|
||||
|
||||
status_parser.set_defaults(func=CmdDataStatus)
|
||||
|
||||
@@ -2,11 +2,9 @@ import argparse
|
||||
import logging
|
||||
|
||||
import dvc.prompt as prompt
|
||||
from dvc.command.base import append_doc_link
|
||||
from dvc.command.base import CmdBase
|
||||
from dvc.command.base import CmdBase, append_doc_link
|
||||
from dvc.exceptions import DvcException
|
||||
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
@@ -27,7 +25,7 @@ class CmdDestroy(CmdBase):
|
||||
)
|
||||
|
||||
self.repo.destroy()
|
||||
except Exception:
|
||||
except DvcException:
|
||||
logger.exception("failed to destroy DVC")
|
||||
return 1
|
||||
return 0
|
||||
|
||||
+72
-25
@@ -8,19 +8,46 @@ import colorama
|
||||
from dvc.command.base import CmdBase, append_doc_link
|
||||
from dvc.exceptions import DvcException
|
||||
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
def _digest(checksum):
|
||||
if isinstance(checksum, str):
|
||||
return checksum[0:8]
|
||||
return "{}..{}".format(checksum["old"][0:8], checksum["new"][0:8])
|
||||
|
||||
|
||||
def _show_md(diff, show_hash=False, hide_missing=False):
|
||||
from dvc.utils.diff import table
|
||||
|
||||
header = ["Status", "Hash", "Path"] if show_hash else ["Status", "Path"]
|
||||
rows = []
|
||||
statuses = ["added", "deleted", "modified"]
|
||||
if not hide_missing:
|
||||
statuses.append("not in cache")
|
||||
for status in statuses:
|
||||
entries = diff.get(status, [])
|
||||
if not entries:
|
||||
continue
|
||||
for entry in entries:
|
||||
path = entry["path"]
|
||||
if show_hash:
|
||||
check_sum = _digest(entry.get("hash", ""))
|
||||
rows.append([status, check_sum, path])
|
||||
else:
|
||||
rows.append([status, path])
|
||||
|
||||
return table(header, rows, True)
|
||||
|
||||
|
||||
class CmdDiff(CmdBase):
|
||||
@staticmethod
|
||||
def _format(diff):
|
||||
def _format(diff, hide_missing=False):
|
||||
"""
|
||||
Given a diff structure, generate a string of paths separated
|
||||
by new lines and grouped together by their state.
|
||||
|
||||
A group's header is colored and its entries are sorted to enhance
|
||||
readability, for example:
|
||||
A group's header is colored to enhance readability, for example:
|
||||
|
||||
Added:
|
||||
another_file.txt
|
||||
@@ -41,21 +68,20 @@ class CmdDiff(CmdBase):
|
||||
At the bottom, include a summary with the number of files per state.
|
||||
"""
|
||||
|
||||
def _digest(checksum):
|
||||
if type(checksum) is str:
|
||||
return checksum[0:8]
|
||||
return "{}..{}".format(checksum["old"][0:8], checksum["new"][0:8])
|
||||
|
||||
colors = {
|
||||
"added": colorama.Fore.GREEN,
|
||||
"modified": colorama.Fore.YELLOW,
|
||||
"deleted": colorama.Fore.RED,
|
||||
"not in cache": colorama.Fore.YELLOW,
|
||||
}
|
||||
|
||||
summary = {}
|
||||
groups = []
|
||||
|
||||
for state in ["added", "deleted", "modified"]:
|
||||
states = ["added", "deleted", "modified"]
|
||||
if not hide_missing:
|
||||
states.append("not in cache")
|
||||
for state in states:
|
||||
summary[state] = 0
|
||||
entries = diff[state]
|
||||
|
||||
@@ -86,31 +112,42 @@ class CmdDiff(CmdBase):
|
||||
)
|
||||
)
|
||||
|
||||
groups.append(
|
||||
if not sum(summary.values()):
|
||||
return None
|
||||
|
||||
fmt = (
|
||||
"files summary: {added} added, {deleted} deleted,"
|
||||
" {modified} modified".format_map(summary)
|
||||
" {modified} modified"
|
||||
)
|
||||
if not hide_missing:
|
||||
fmt += ", {not in cache} not in cache"
|
||||
groups.append(fmt.format_map(summary))
|
||||
|
||||
return "\n\n".join(groups)
|
||||
|
||||
def run(self):
|
||||
try:
|
||||
diff = self.repo.diff(self.args.a_rev, self.args.b_rev)
|
||||
show_hash = self.args.show_hash
|
||||
hide_missing = self.args.b_rev or self.args.hide_missing
|
||||
if hide_missing:
|
||||
del diff["not in cache"]
|
||||
|
||||
if not any(diff.values()):
|
||||
return 0
|
||||
|
||||
if not self.args.show_hash:
|
||||
for _, entries in diff.items():
|
||||
for key, entries in diff.items():
|
||||
entries = sorted(entries, key=lambda entry: entry["path"])
|
||||
if not show_hash:
|
||||
for entry in entries:
|
||||
del entry["hash"]
|
||||
diff[key] = entries
|
||||
|
||||
if self.args.show_json:
|
||||
res = json.dumps(diff)
|
||||
else:
|
||||
res = self._format(diff)
|
||||
|
||||
logger.info(res)
|
||||
logger.info(json.dumps(diff))
|
||||
elif self.args.show_md:
|
||||
logger.info(_show_md(diff, show_hash, hide_missing))
|
||||
elif diff:
|
||||
output = self._format(diff, hide_missing)
|
||||
if output:
|
||||
logger.info(output)
|
||||
|
||||
except DvcException:
|
||||
logger.exception("failed to get diff")
|
||||
@@ -120,9 +157,8 @@ class CmdDiff(CmdBase):
|
||||
|
||||
def add_parser(subparsers, parent_parser):
|
||||
DIFF_DESCRIPTION = (
|
||||
"Show changes between commits in the DVC repository,"
|
||||
" or between a commit and the workspace. "
|
||||
"Prints the list of paths added, modified, or deleted."
|
||||
"Show added, modified, or deleted data between commits in the DVC"
|
||||
" repository, or between a commit and the workspace."
|
||||
)
|
||||
diff_parser = subparsers.add_parser(
|
||||
"diff",
|
||||
@@ -154,4 +190,15 @@ def add_parser(subparsers, parent_parser):
|
||||
action="store_true",
|
||||
default=False,
|
||||
)
|
||||
diff_parser.add_argument(
|
||||
"--show-md",
|
||||
help="Show tabulated output in the Markdown format (GFM).",
|
||||
action="store_true",
|
||||
default=False,
|
||||
)
|
||||
diff_parser.add_argument(
|
||||
"--hide-missing",
|
||||
help="Hide missing cache file status.",
|
||||
action="store_true",
|
||||
)
|
||||
diff_parser.set_defaults(func=CmdDiff)
|
||||
|
||||
@@ -0,0 +1,903 @@
|
||||
import argparse
|
||||
import io
|
||||
import logging
|
||||
import os
|
||||
from collections import OrderedDict
|
||||
from collections.abc import Mapping
|
||||
from datetime import date, datetime
|
||||
from itertools import groupby
|
||||
from typing import Iterable, Optional
|
||||
|
||||
import dvc.prompt as prompt
|
||||
from dvc.command.base import CmdBase, append_doc_link, fix_subparsers
|
||||
from dvc.command.metrics import DEFAULT_PRECISION
|
||||
from dvc.command.repro import CmdRepro
|
||||
from dvc.command.repro import add_arguments as add_repro_arguments
|
||||
from dvc.exceptions import DvcException, InvalidArgumentError
|
||||
from dvc.repo.experiments import Experiments
|
||||
from dvc.scm.git import Git
|
||||
from dvc.utils.flatten import flatten
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
def _filter_names(
|
||||
names: Iterable,
|
||||
label: str,
|
||||
include: Optional[Iterable],
|
||||
exclude: Optional[Iterable],
|
||||
):
|
||||
if include and exclude:
|
||||
intersection = set(include) & set(exclude)
|
||||
if intersection:
|
||||
values = ", ".join(intersection)
|
||||
raise InvalidArgumentError(
|
||||
f"'{values}' specified in both --include-{label} and"
|
||||
f" --exclude-{label}"
|
||||
)
|
||||
|
||||
names = [tuple(name.split(".")) for name in names]
|
||||
|
||||
def _filter(filters, update_func):
|
||||
filters = [tuple(name.split(".")) for name in filters]
|
||||
for length, groups in groupby(filters, len):
|
||||
for group in groups:
|
||||
matches = [name for name in names if name[:length] == group]
|
||||
if not matches:
|
||||
name = ".".join(group)
|
||||
raise InvalidArgumentError(
|
||||
f"'{name}' does not match any known {label}"
|
||||
)
|
||||
update_func({match: None for match in matches})
|
||||
|
||||
if include:
|
||||
ret: OrderedDict = OrderedDict()
|
||||
_filter(include, ret.update)
|
||||
else:
|
||||
ret = OrderedDict({name: None for name in names})
|
||||
|
||||
if exclude:
|
||||
_filter(exclude, ret.difference_update) # type: ignore[attr-defined]
|
||||
|
||||
return [".".join(name) for name in ret]
|
||||
|
||||
|
||||
def _update_names(names, items):
|
||||
for name, item in items:
|
||||
if isinstance(item, dict):
|
||||
item = flatten(item)
|
||||
names.update(item.keys())
|
||||
else:
|
||||
names[name] = None
|
||||
|
||||
|
||||
def _collect_names(all_experiments, **kwargs):
|
||||
metric_names = set()
|
||||
param_names = set()
|
||||
|
||||
for _, experiments in all_experiments.items():
|
||||
for exp in experiments.values():
|
||||
_update_names(metric_names, exp.get("metrics", {}).items())
|
||||
_update_names(param_names, exp.get("params", {}).items())
|
||||
|
||||
metric_names = _filter_names(
|
||||
sorted(metric_names),
|
||||
"metrics",
|
||||
kwargs.get("include_metrics"),
|
||||
kwargs.get("exclude_metrics"),
|
||||
)
|
||||
param_names = _filter_names(
|
||||
sorted(param_names),
|
||||
"params",
|
||||
kwargs.get("include_params"),
|
||||
kwargs.get("exclude_params"),
|
||||
)
|
||||
|
||||
return metric_names, param_names
|
||||
|
||||
|
||||
def _collect_rows(
|
||||
base_rev,
|
||||
experiments,
|
||||
metric_names,
|
||||
param_names,
|
||||
precision=DEFAULT_PRECISION,
|
||||
no_timestamp=False,
|
||||
sort_by=None,
|
||||
sort_order=None,
|
||||
):
|
||||
if sort_by:
|
||||
if sort_by in metric_names:
|
||||
sort_type = "metrics"
|
||||
elif sort_by in param_names:
|
||||
sort_type = "params"
|
||||
else:
|
||||
raise InvalidArgumentError(f"Unknown sort column '{sort_by}'")
|
||||
reverse = sort_order == "desc"
|
||||
experiments = _sort_exp(experiments, sort_by, sort_type, reverse)
|
||||
|
||||
new_checkpoint = True
|
||||
for i, (rev, exp) in enumerate(experiments.items()):
|
||||
row = []
|
||||
style = None
|
||||
queued = "*" if exp.get("queued", False) else ""
|
||||
|
||||
tip = exp.get("checkpoint_tip")
|
||||
parent = ""
|
||||
if rev == "baseline":
|
||||
if Git.is_sha(base_rev):
|
||||
name_rev = base_rev[:7]
|
||||
else:
|
||||
name_rev = base_rev
|
||||
name = exp.get("name", name_rev)
|
||||
row.append(f"{name}")
|
||||
style = "bold"
|
||||
else:
|
||||
if tip:
|
||||
parent_rev = exp.get("checkpoint_parent", "")
|
||||
parent_exp = experiments.get(parent_rev, {})
|
||||
parent_tip = parent_exp.get("checkpoint_tip")
|
||||
if tip == parent_tip:
|
||||
if new_checkpoint:
|
||||
tree = "│ ╓"
|
||||
else:
|
||||
tree = "│ ╟"
|
||||
new_checkpoint = False
|
||||
else:
|
||||
if parent_rev == base_rev:
|
||||
tree = "├─╨"
|
||||
else:
|
||||
tree = "│ ╟"
|
||||
parent = f" ({parent_rev[:7]})"
|
||||
new_checkpoint = True
|
||||
else:
|
||||
if i < len(experiments) - 1:
|
||||
tree = "├──"
|
||||
else:
|
||||
tree = "└──"
|
||||
new_checkpoint = True
|
||||
name = exp.get("name", rev[:7])
|
||||
row.append(f"{tree} {queued}{name}{parent}")
|
||||
|
||||
if not no_timestamp:
|
||||
row.append(_format_time(exp.get("timestamp")))
|
||||
|
||||
_extend_row(
|
||||
row, metric_names, exp.get("metrics", {}).items(), precision
|
||||
)
|
||||
_extend_row(row, param_names, exp.get("params", {}).items(), precision)
|
||||
|
||||
yield row, style
|
||||
|
||||
|
||||
def _sort_exp(experiments, sort_by, typ, reverse):
|
||||
def _sort(item):
|
||||
rev, exp = item
|
||||
tip = exp.get("checkpoint_tip")
|
||||
if tip and tip != rev:
|
||||
# Sort checkpoint experiments by tip commit
|
||||
return _sort((tip, experiments[tip]))
|
||||
for fname, item in exp.get(typ, {}).items():
|
||||
if isinstance(item, dict):
|
||||
item = flatten(item)
|
||||
else:
|
||||
item = {fname: item}
|
||||
if sort_by in item:
|
||||
val = item[sort_by]
|
||||
return (val is None, val)
|
||||
return (True, None)
|
||||
|
||||
ret = OrderedDict()
|
||||
if "baseline" in experiments:
|
||||
ret["baseline"] = experiments.pop("baseline")
|
||||
|
||||
ret.update(sorted(experiments.items(), key=_sort, reverse=reverse))
|
||||
return ret
|
||||
|
||||
|
||||
def _format_time(timestamp):
|
||||
if timestamp is None:
|
||||
return "-"
|
||||
if timestamp.date() == date.today():
|
||||
fmt = "%I:%M %p"
|
||||
else:
|
||||
fmt = "%b %d, %Y"
|
||||
return timestamp.strftime(fmt)
|
||||
|
||||
|
||||
def _format_field(val, precision=DEFAULT_PRECISION):
|
||||
if isinstance(val, float):
|
||||
fmt = f"{{:.{precision}g}}"
|
||||
return fmt.format(val)
|
||||
elif isinstance(val, Mapping):
|
||||
return {k: _format_field(v) for k, v in val.items()}
|
||||
elif isinstance(val, list):
|
||||
return [_format_field(x) for x in val]
|
||||
return str(val)
|
||||
|
||||
|
||||
def _extend_row(row, names, items, precision):
|
||||
from rich.text import Text
|
||||
|
||||
if not items:
|
||||
row.extend(["-"] * len(names))
|
||||
return
|
||||
|
||||
for fname, item in items:
|
||||
if isinstance(item, dict):
|
||||
item = flatten(item)
|
||||
else:
|
||||
item = {fname: item}
|
||||
for name in names:
|
||||
if name in item:
|
||||
value = item[name]
|
||||
if value is None:
|
||||
text = "-"
|
||||
else:
|
||||
# wrap field data in rich.Text, otherwise rich may
|
||||
# interpret unescaped braces from list/dict types as rich
|
||||
# markup tags
|
||||
text = Text(str(_format_field(value, precision)))
|
||||
row.append(text)
|
||||
else:
|
||||
row.append("-")
|
||||
|
||||
|
||||
def _parse_list(param_list):
|
||||
ret = []
|
||||
for param_str in param_list:
|
||||
# we don't care about filename prefixes for show, silently
|
||||
# ignore it if provided to keep usage consistent with other
|
||||
# metric/param list command options
|
||||
_, _, param_str = param_str.rpartition(":")
|
||||
ret.extend(param_str.split(","))
|
||||
return ret
|
||||
|
||||
|
||||
def _show_experiments(all_experiments, console, **kwargs):
|
||||
from rich.table import Table
|
||||
|
||||
include_metrics = _parse_list(kwargs.pop("include_metrics", []))
|
||||
exclude_metrics = _parse_list(kwargs.pop("exclude_metrics", []))
|
||||
include_params = _parse_list(kwargs.pop("include_params", []))
|
||||
exclude_params = _parse_list(kwargs.pop("exclude_params", []))
|
||||
|
||||
metric_names, param_names = _collect_names(
|
||||
all_experiments,
|
||||
include_metrics=include_metrics,
|
||||
exclude_metrics=exclude_metrics,
|
||||
include_params=include_params,
|
||||
exclude_params=exclude_params,
|
||||
)
|
||||
|
||||
table = Table()
|
||||
table.add_column("Experiment", no_wrap=True)
|
||||
if not kwargs.get("no_timestamp", False):
|
||||
table.add_column("Created")
|
||||
for name in metric_names:
|
||||
table.add_column(name, justify="right", no_wrap=True)
|
||||
for name in param_names:
|
||||
table.add_column(name, justify="left")
|
||||
|
||||
for base_rev, experiments in all_experiments.items():
|
||||
for row, _, in _collect_rows(
|
||||
base_rev, experiments, metric_names, param_names, **kwargs,
|
||||
):
|
||||
table.add_row(*row)
|
||||
|
||||
console.print(table)
|
||||
|
||||
|
||||
def _format_json(item):
|
||||
if isinstance(item, (date, datetime)):
|
||||
return item.isoformat()
|
||||
raise TypeError
|
||||
|
||||
|
||||
class CmdExperimentsShow(CmdBase):
|
||||
def run(self):
|
||||
from rich.console import Console
|
||||
|
||||
from dvc.utils.pager import pager
|
||||
|
||||
if not self.repo.experiments:
|
||||
return 0
|
||||
|
||||
try:
|
||||
all_experiments = self.repo.experiments.show(
|
||||
all_branches=self.args.all_branches,
|
||||
all_tags=self.args.all_tags,
|
||||
all_commits=self.args.all_commits,
|
||||
sha_only=self.args.sha,
|
||||
)
|
||||
|
||||
if self.args.show_json:
|
||||
import json
|
||||
|
||||
logger.info(json.dumps(all_experiments, default=_format_json))
|
||||
return 0
|
||||
|
||||
if self.args.no_pager:
|
||||
console = Console()
|
||||
else:
|
||||
# Note: rich does not currently include a native way to force
|
||||
# infinite width for use with a pager
|
||||
console = Console(
|
||||
file=io.StringIO(), force_terminal=True, width=9999
|
||||
)
|
||||
|
||||
if self.args.precision is None:
|
||||
precision = DEFAULT_PRECISION
|
||||
else:
|
||||
precision = self.args.precision
|
||||
|
||||
_show_experiments(
|
||||
all_experiments,
|
||||
console,
|
||||
include_metrics=self.args.include_metrics,
|
||||
exclude_metrics=self.args.exclude_metrics,
|
||||
include_params=self.args.include_params,
|
||||
exclude_params=self.args.exclude_params,
|
||||
no_timestamp=self.args.no_timestamp,
|
||||
sort_by=self.args.sort_by,
|
||||
sort_order=self.args.sort_order,
|
||||
precision=precision,
|
||||
)
|
||||
|
||||
if not self.args.no_pager:
|
||||
pager(console.file.getvalue())
|
||||
except DvcException:
|
||||
logger.exception("failed to show experiments")
|
||||
return 1
|
||||
|
||||
return 0
|
||||
|
||||
|
||||
class CmdExperimentsApply(CmdBase):
|
||||
def run(self):
|
||||
if not self.repo.experiments:
|
||||
return 0
|
||||
|
||||
self.repo.experiments.apply(self.args.experiment)
|
||||
|
||||
return 0
|
||||
|
||||
|
||||
def _show_diff(
|
||||
diff,
|
||||
title="",
|
||||
markdown=False,
|
||||
no_path=False,
|
||||
old=False,
|
||||
precision=DEFAULT_PRECISION,
|
||||
):
|
||||
from dvc.utils.diff import table
|
||||
|
||||
rows = []
|
||||
for fname, diff_ in diff.items():
|
||||
sorted_diff = OrderedDict(sorted(diff_.items()))
|
||||
for item, change in sorted_diff.items():
|
||||
row = [] if no_path else [fname]
|
||||
row.append(item)
|
||||
if old:
|
||||
row.append(_format_field(change.get("old"), precision))
|
||||
row.append(_format_field(change["new"], precision))
|
||||
row.append(
|
||||
_format_field(
|
||||
change.get("diff", "diff not supported"), precision
|
||||
)
|
||||
)
|
||||
rows.append(row)
|
||||
|
||||
header = [] if no_path else ["Path"]
|
||||
header.append(title)
|
||||
if old:
|
||||
header.extend(["Old", "New"])
|
||||
else:
|
||||
header.append("Value")
|
||||
header.append("Change")
|
||||
|
||||
return table(header, rows, markdown)
|
||||
|
||||
|
||||
class CmdExperimentsDiff(CmdBase):
|
||||
def run(self):
|
||||
if not self.repo.experiments:
|
||||
return 0
|
||||
|
||||
try:
|
||||
diff = self.repo.experiments.diff(
|
||||
a_rev=self.args.a_rev,
|
||||
b_rev=self.args.b_rev,
|
||||
all=self.args.all,
|
||||
)
|
||||
|
||||
if self.args.show_json:
|
||||
import json
|
||||
|
||||
logger.info(json.dumps(diff))
|
||||
else:
|
||||
if self.args.precision is None:
|
||||
precision = DEFAULT_PRECISION
|
||||
else:
|
||||
precision = self.args.precision
|
||||
|
||||
diffs = [("metrics", "Metric"), ("params", "Param")]
|
||||
for key, title in diffs:
|
||||
table = _show_diff(
|
||||
diff[key],
|
||||
title=title,
|
||||
markdown=self.args.show_md,
|
||||
no_path=self.args.no_path,
|
||||
old=self.args.old,
|
||||
precision=precision,
|
||||
)
|
||||
if table:
|
||||
logger.info(table)
|
||||
logger.info("")
|
||||
|
||||
except DvcException:
|
||||
logger.exception("failed to show experiments diff")
|
||||
return 1
|
||||
|
||||
return 0
|
||||
|
||||
|
||||
class CmdExperimentsRun(CmdRepro):
|
||||
def run(self):
|
||||
if not self.repo.experiments:
|
||||
return 0
|
||||
|
||||
saved_dir = os.path.realpath(os.curdir)
|
||||
os.chdir(self.args.cwd)
|
||||
|
||||
# Dirty hack so the for loop below can at least enter once
|
||||
if self.args.all_pipelines:
|
||||
self.args.targets = [None]
|
||||
elif not self.args.targets:
|
||||
self.args.targets = self.default_targets
|
||||
|
||||
ret = 0
|
||||
for target in self.args.targets:
|
||||
try:
|
||||
self.repo.experiments.run(
|
||||
target,
|
||||
name=self.args.name,
|
||||
queue=self.args.queue,
|
||||
run_all=self.args.run_all,
|
||||
jobs=self.args.jobs,
|
||||
params=self.args.params,
|
||||
checkpoint_resume=self.args.checkpoint_resume,
|
||||
**self._repro_kwargs,
|
||||
)
|
||||
except DvcException:
|
||||
logger.exception("")
|
||||
ret = 1
|
||||
break
|
||||
|
||||
os.chdir(saved_dir)
|
||||
return ret
|
||||
|
||||
|
||||
class CmdExperimentsGC(CmdRepro):
|
||||
def run(self):
|
||||
from dvc.repo.gc import _raise_error_if_all_disabled
|
||||
|
||||
if not self.repo.experiments:
|
||||
return 0
|
||||
|
||||
_raise_error_if_all_disabled(
|
||||
all_branches=self.args.all_branches,
|
||||
all_tags=self.args.all_tags,
|
||||
all_commits=self.args.all_commits,
|
||||
workspace=self.args.workspace,
|
||||
)
|
||||
|
||||
msg = "This will remove all experiments except those derived from "
|
||||
|
||||
msg += "the workspace"
|
||||
if self.args.all_commits:
|
||||
msg += " and all git commits"
|
||||
elif self.args.all_branches and self.args.all_tags:
|
||||
msg += " and all git branches and tags"
|
||||
elif self.args.all_branches:
|
||||
msg += " and all git branches"
|
||||
elif self.args.all_tags:
|
||||
msg += " and all git tags"
|
||||
msg += " of the current repo."
|
||||
if self.args.queued:
|
||||
msg += " Run queued experiments will be preserved."
|
||||
if self.args.queued:
|
||||
msg += " Run queued experiments will be removed."
|
||||
|
||||
logger.warning(msg)
|
||||
|
||||
msg = "Are you sure you want to proceed?"
|
||||
if not self.args.force and not prompt.confirm(msg):
|
||||
return 1
|
||||
|
||||
removed = self.repo.experiments.gc(
|
||||
all_branches=self.args.all_branches,
|
||||
all_tags=self.args.all_tags,
|
||||
all_commits=self.args.all_commits,
|
||||
workspace=self.args.workspace,
|
||||
queued=self.args.queued,
|
||||
)
|
||||
|
||||
if removed:
|
||||
logger.info(
|
||||
f"Removed {removed} experiments. To remove unused cache files "
|
||||
"use 'dvc gc'."
|
||||
)
|
||||
else:
|
||||
logger.info("No experiments to remove.")
|
||||
return 0
|
||||
|
||||
|
||||
class CmdExperimentsBranch(CmdBase):
|
||||
def run(self):
|
||||
if not self.repo.experiments:
|
||||
return 0
|
||||
|
||||
self.repo.experiments.branch(self.args.experiment, self.args.branch)
|
||||
|
||||
return 0
|
||||
|
||||
|
||||
def add_parser(subparsers, parent_parser):
|
||||
EXPERIMENTS_HELP = "Commands to display and compare experiments."
|
||||
|
||||
experiments_parser = subparsers.add_parser(
|
||||
"experiments",
|
||||
parents=[parent_parser],
|
||||
aliases=["exp"],
|
||||
description=append_doc_link(EXPERIMENTS_HELP, "experiments"),
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
|
||||
experiments_subparsers = experiments_parser.add_subparsers(
|
||||
dest="cmd",
|
||||
help="Use `dvc experiments CMD --help` to display "
|
||||
"command-specific help.",
|
||||
)
|
||||
|
||||
fix_subparsers(experiments_subparsers)
|
||||
|
||||
EXPERIMENTS_SHOW_HELP = "Print experiments."
|
||||
experiments_show_parser = experiments_subparsers.add_parser(
|
||||
"show",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(EXPERIMENTS_SHOW_HELP, "experiments/show"),
|
||||
help=EXPERIMENTS_SHOW_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
experiments_show_parser.add_argument(
|
||||
"-a",
|
||||
"--all-branches",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Show metrics for all branches.",
|
||||
)
|
||||
experiments_show_parser.add_argument(
|
||||
"-T",
|
||||
"--all-tags",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Show metrics for all tags.",
|
||||
)
|
||||
experiments_show_parser.add_argument(
|
||||
"--all-commits",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Show metrics for all commits.",
|
||||
)
|
||||
experiments_show_parser.add_argument(
|
||||
"--no-pager",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Do not pipe output into a pager.",
|
||||
)
|
||||
experiments_show_parser.add_argument(
|
||||
"--include-metrics",
|
||||
action="append",
|
||||
default=[],
|
||||
help="Include the specified metrics in output table.",
|
||||
metavar="<metrics_list>",
|
||||
)
|
||||
experiments_show_parser.add_argument(
|
||||
"--exclude-metrics",
|
||||
action="append",
|
||||
default=[],
|
||||
help="Exclude the specified metrics from output table.",
|
||||
metavar="<metrics_list>",
|
||||
)
|
||||
experiments_show_parser.add_argument(
|
||||
"--include-params",
|
||||
action="append",
|
||||
default=[],
|
||||
help="Include the specified params in output table.",
|
||||
metavar="<params_list>",
|
||||
)
|
||||
experiments_show_parser.add_argument(
|
||||
"--exclude-params",
|
||||
action="append",
|
||||
default=[],
|
||||
help="Exclude the specified params from output table.",
|
||||
metavar="<params_list>",
|
||||
)
|
||||
experiments_show_parser.add_argument(
|
||||
"--sort-by",
|
||||
help="Sort related experiments by the specified metric or param.",
|
||||
metavar="<metric/param>",
|
||||
)
|
||||
experiments_show_parser.add_argument(
|
||||
"--sort-order",
|
||||
help="Sort order to use with --sort-by.",
|
||||
choices=("asc", "desc"),
|
||||
default="asc",
|
||||
)
|
||||
experiments_show_parser.add_argument(
|
||||
"--no-timestamp",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Do not show experiment timestamps.",
|
||||
)
|
||||
experiments_show_parser.add_argument(
|
||||
"--sha",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Always show git commit SHAs instead of branch/tag names.",
|
||||
)
|
||||
experiments_show_parser.add_argument(
|
||||
"--show-json",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Print output in JSON format instead of a human-readable table.",
|
||||
)
|
||||
experiments_show_parser.add_argument(
|
||||
"--precision",
|
||||
type=int,
|
||||
help=(
|
||||
"Round metrics/params to `n` digits precision after the decimal "
|
||||
f"point. Rounds to {DEFAULT_PRECISION} digits by default."
|
||||
),
|
||||
metavar="<n>",
|
||||
)
|
||||
experiments_show_parser.set_defaults(func=CmdExperimentsShow)
|
||||
|
||||
EXPERIMENTS_APPLY_HELP = (
|
||||
"Apply the changes from an experiment to your workspace."
|
||||
)
|
||||
experiments_apply_parser = experiments_subparsers.add_parser(
|
||||
"apply",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(
|
||||
EXPERIMENTS_APPLY_HELP, "experiments/apply"
|
||||
),
|
||||
help=EXPERIMENTS_APPLY_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
experiments_apply_parser.add_argument(
|
||||
"experiment", help="Experiment to be applied.",
|
||||
)
|
||||
experiments_apply_parser.set_defaults(func=CmdExperimentsApply)
|
||||
|
||||
EXPERIMENTS_DIFF_HELP = (
|
||||
"Show changes between experiments in the DVC repository."
|
||||
)
|
||||
experiments_diff_parser = experiments_subparsers.add_parser(
|
||||
"diff",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(EXPERIMENTS_DIFF_HELP, "experiments/diff"),
|
||||
help=EXPERIMENTS_DIFF_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
experiments_diff_parser.add_argument(
|
||||
"a_rev", nargs="?", help="Old experiment to compare (defaults to HEAD)"
|
||||
)
|
||||
experiments_diff_parser.add_argument(
|
||||
"b_rev",
|
||||
nargs="?",
|
||||
help="New experiment to compare (defaults to the current workspace)",
|
||||
)
|
||||
experiments_diff_parser.add_argument(
|
||||
"--all",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Show unchanged metrics/params as well.",
|
||||
)
|
||||
experiments_diff_parser.add_argument(
|
||||
"--show-json",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Show output in JSON format.",
|
||||
)
|
||||
experiments_diff_parser.add_argument(
|
||||
"--show-md",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Show tabulated output in the Markdown format (GFM).",
|
||||
)
|
||||
experiments_diff_parser.add_argument(
|
||||
"--old",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Show old metric/param value.",
|
||||
)
|
||||
experiments_diff_parser.add_argument(
|
||||
"--no-path",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Don't show metric/param path.",
|
||||
)
|
||||
experiments_diff_parser.add_argument(
|
||||
"--precision",
|
||||
type=int,
|
||||
help=(
|
||||
"Round metrics/params to `n` digits precision after the decimal "
|
||||
f"point. Rounds to {DEFAULT_PRECISION} digits by default."
|
||||
),
|
||||
metavar="<n>",
|
||||
)
|
||||
experiments_diff_parser.set_defaults(func=CmdExperimentsDiff)
|
||||
|
||||
EXPERIMENTS_RUN_HELP = (
|
||||
"Reproduce complete or partial experiment pipelines."
|
||||
)
|
||||
experiments_run_parser = experiments_subparsers.add_parser(
|
||||
"run",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(EXPERIMENTS_RUN_HELP, "experiments/run"),
|
||||
help=EXPERIMENTS_RUN_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
_add_run_common(experiments_run_parser)
|
||||
experiments_run_parser.add_argument(
|
||||
"--checkpoint-resume", type=str, default=None, help=argparse.SUPPRESS,
|
||||
)
|
||||
experiments_run_parser.set_defaults(func=CmdExperimentsRun)
|
||||
|
||||
EXPERIMENTS_RESUME_HELP = "Resume checkpoint experiments."
|
||||
experiments_resume_parser = experiments_subparsers.add_parser(
|
||||
"resume",
|
||||
parents=[parent_parser],
|
||||
aliases=["res"],
|
||||
description=append_doc_link(
|
||||
EXPERIMENTS_RESUME_HELP, "experiments/resume"
|
||||
),
|
||||
help=EXPERIMENTS_RESUME_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
_add_run_common(experiments_resume_parser)
|
||||
experiments_resume_parser.add_argument(
|
||||
"-r",
|
||||
"--rev",
|
||||
type=str,
|
||||
default=Experiments.LAST_CHECKPOINT,
|
||||
dest="checkpoint_resume",
|
||||
help=(
|
||||
"Continue the specified checkpoint experiment. "
|
||||
"If no experiment revision is provided, "
|
||||
"the most recently run checkpoint experiment will be used."
|
||||
),
|
||||
metavar="<experiment_rev>",
|
||||
)
|
||||
experiments_resume_parser.set_defaults(func=CmdExperimentsRun)
|
||||
|
||||
EXPERIMENTS_GC_HELP = "Garbage collect unneeded experiments."
|
||||
EXPERIMENTS_GC_DESCRIPTION = (
|
||||
"Removes all experiments which are not derived from the specified"
|
||||
"Git revisions."
|
||||
)
|
||||
experiments_gc_parser = experiments_subparsers.add_parser(
|
||||
"gc",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(
|
||||
EXPERIMENTS_GC_DESCRIPTION, "experiments/gc"
|
||||
),
|
||||
help=EXPERIMENTS_GC_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
experiments_gc_parser.add_argument(
|
||||
"-w",
|
||||
"--workspace",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Keep experiments derived from the current workspace.",
|
||||
)
|
||||
experiments_gc_parser.add_argument(
|
||||
"-a",
|
||||
"--all-branches",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Keep experiments derived from the tips of all Git branches.",
|
||||
)
|
||||
experiments_gc_parser.add_argument(
|
||||
"-T",
|
||||
"--all-tags",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Keep experiments derived from all Git tags.",
|
||||
)
|
||||
experiments_gc_parser.add_argument(
|
||||
"--all-commits",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Keep experiments derived from all Git commits.",
|
||||
)
|
||||
experiments_gc_parser.add_argument(
|
||||
"--queued",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help=(
|
||||
"Keep queued experiments (experiments run queue will be cleared "
|
||||
"by default)."
|
||||
),
|
||||
)
|
||||
experiments_gc_parser.add_argument(
|
||||
"-f",
|
||||
"--force",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Force garbage collection - automatically agree to all prompts.",
|
||||
)
|
||||
experiments_gc_parser.set_defaults(func=CmdExperimentsGC)
|
||||
|
||||
EXPERIMENTS_BRANCH_HELP = "Promote an experiment to a Git branch."
|
||||
experiments_branch_parser = experiments_subparsers.add_parser(
|
||||
"branch",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(
|
||||
EXPERIMENTS_BRANCH_HELP, "experiments/branch"
|
||||
),
|
||||
help=EXPERIMENTS_BRANCH_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
experiments_branch_parser.add_argument(
|
||||
"experiment", help="Experiment to be promoted.",
|
||||
)
|
||||
experiments_branch_parser.add_argument(
|
||||
"branch", help="Git branch name to use.",
|
||||
)
|
||||
experiments_branch_parser.set_defaults(func=CmdExperimentsBranch)
|
||||
|
||||
|
||||
def _add_run_common(parser):
|
||||
"""Add common args for 'exp run' and 'exp resume'."""
|
||||
# inherit arguments from `dvc repro`
|
||||
add_repro_arguments(parser)
|
||||
parser.add_argument(
|
||||
"-n",
|
||||
"--name",
|
||||
default=None,
|
||||
help=(
|
||||
"Human-readable experiment name. If not specified, a name will "
|
||||
"be auto-generated."
|
||||
),
|
||||
)
|
||||
parser.add_argument(
|
||||
"--params",
|
||||
action="append",
|
||||
default=[],
|
||||
help="Use the specified param values when reproducing pipelines.",
|
||||
metavar="[<filename>:]<params_list>",
|
||||
)
|
||||
parser.add_argument(
|
||||
"--queue",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Stage this experiment in the run queue for future execution.",
|
||||
)
|
||||
parser.add_argument(
|
||||
"--run-all",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Execute all experiments in the run queue.",
|
||||
)
|
||||
parser.add_argument(
|
||||
"-j",
|
||||
"--jobs",
|
||||
type=int,
|
||||
help="Run the specified number of experiments at a time in parallel.",
|
||||
metavar="<number>",
|
||||
)
|
||||
@@ -0,0 +1,58 @@
|
||||
import argparse
|
||||
import logging
|
||||
|
||||
from dvc.command import completion
|
||||
from dvc.command.base import CmdBase, append_doc_link
|
||||
from dvc.exceptions import DvcException
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
class CmdFreezeBase(CmdBase):
|
||||
def _run(self, func, name):
|
||||
ret = 0
|
||||
for target in self.args.targets:
|
||||
try:
|
||||
func(target)
|
||||
except DvcException:
|
||||
logger.exception(f"failed to {name} '{target}'")
|
||||
ret = 1
|
||||
return ret
|
||||
|
||||
|
||||
class CmdFreeze(CmdFreezeBase):
|
||||
def run(self):
|
||||
return self._run(self.repo.freeze, "freeze")
|
||||
|
||||
|
||||
class CmdUnfreeze(CmdFreezeBase):
|
||||
def run(self):
|
||||
return self._run(self.repo.unfreeze, "unfreeze")
|
||||
|
||||
|
||||
def add_parser(subparsers, parent_parser):
|
||||
FREEZE_HELP = "Freeze stages or .dvc files."
|
||||
freeze_parser = subparsers.add_parser(
|
||||
"freeze",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(FREEZE_HELP, "freeze"),
|
||||
help=FREEZE_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
freeze_parser.add_argument(
|
||||
"targets", nargs="+", help="Stages or .dvc files to freeze",
|
||||
).complete = completion.DVC_FILE
|
||||
freeze_parser.set_defaults(func=CmdFreeze)
|
||||
|
||||
UNFREEZE_HELP = "Unfreeze stages or .dvc files."
|
||||
unfreeze_parser = subparsers.add_parser(
|
||||
"unfreeze",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(UNFREEZE_HELP, "unfreeze"),
|
||||
help=UNFREEZE_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
unfreeze_parser.add_argument(
|
||||
"targets", nargs="+", help="Stages or .dvc files to unfreeze",
|
||||
).complete = completion.DVC_FILE
|
||||
unfreeze_parser.set_defaults(func=CmdUnfreeze)
|
||||
+17
-7
@@ -3,9 +3,7 @@ import logging
|
||||
import os
|
||||
|
||||
import dvc.prompt as prompt
|
||||
from dvc.command.base import append_doc_link
|
||||
from dvc.command.base import CmdBase
|
||||
|
||||
from dvc.command.base import CmdBase, append_doc_link
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
@@ -23,7 +21,7 @@ class CmdGC(CmdBase):
|
||||
|
||||
msg = "This will remove all cache except items used in "
|
||||
|
||||
msg += "the working tree"
|
||||
msg += "the workspace"
|
||||
if self.args.all_commits:
|
||||
msg += " and all git commits"
|
||||
elif self.args.all_branches and self.args.all_tags:
|
||||
@@ -79,7 +77,7 @@ def add_parser(subparsers, parent_parser):
|
||||
"--workspace",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Keep data files used in the current workspace (working tree).",
|
||||
help="Keep data files used in the current workspace.",
|
||||
)
|
||||
gc_parser.add_argument(
|
||||
"-a",
|
||||
@@ -109,7 +107,10 @@ def add_parser(subparsers, parent_parser):
|
||||
help="Collect garbage in remote repository.",
|
||||
)
|
||||
gc_parser.add_argument(
|
||||
"-r", "--remote", help="Remote storage to collect garbage in."
|
||||
"-r",
|
||||
"--remote",
|
||||
help="Remote storage to collect garbage in",
|
||||
metavar="<name>",
|
||||
)
|
||||
gc_parser.add_argument(
|
||||
"-f",
|
||||
@@ -119,7 +120,15 @@ def add_parser(subparsers, parent_parser):
|
||||
help="Force garbage collection - automatically agree to all prompts.",
|
||||
)
|
||||
gc_parser.add_argument(
|
||||
"-j", "--jobs", type=int, help="Number of jobs to run simultaneously."
|
||||
"-j",
|
||||
"--jobs",
|
||||
type=int,
|
||||
help=(
|
||||
"Number of jobs to run simultaneously. "
|
||||
"The default value is 4 * cpu_count(). "
|
||||
"For SSH remotes, the default is 4. "
|
||||
),
|
||||
metavar="<number>",
|
||||
)
|
||||
gc_parser.add_argument(
|
||||
"-p",
|
||||
@@ -130,5 +139,6 @@ def add_parser(subparsers, parent_parser):
|
||||
help="Keep data files required by these projects "
|
||||
"in addition to the current one. "
|
||||
"Useful if you share a single cache across repos.",
|
||||
metavar="<paths>",
|
||||
)
|
||||
gc_parser.set_defaults(func=CmdGC)
|
||||
|
||||
+14
-7
@@ -1,10 +1,10 @@
|
||||
import argparse
|
||||
import logging
|
||||
|
||||
from .base import append_doc_link
|
||||
from .base import CmdBaseNoRepo
|
||||
from dvc.exceptions import DvcException
|
||||
|
||||
from . import completion
|
||||
from .base import CmdBaseNoRepo, append_doc_link
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
@@ -63,13 +63,20 @@ def add_parser(subparsers, parent_parser):
|
||||
"url", help="Location of DVC or Git repository to download from"
|
||||
)
|
||||
get_parser.add_argument(
|
||||
"path", help="Path to a file or directory within the repository"
|
||||
)
|
||||
"path", help="Path to a file or directory within the repository",
|
||||
).complete = completion.FILE
|
||||
get_parser.add_argument(
|
||||
"-o", "--out", nargs="?", help="Destination path to download files to"
|
||||
)
|
||||
"-o",
|
||||
"--out",
|
||||
nargs="?",
|
||||
help="Destination path to download files to",
|
||||
metavar="<path>",
|
||||
).complete = completion.DIR
|
||||
get_parser.add_argument(
|
||||
"--rev", nargs="?", help="Git revision (e.g. SHA, branch, tag)"
|
||||
"--rev",
|
||||
nargs="?",
|
||||
help="Git revision (e.g. SHA, branch, tag)",
|
||||
metavar="<commit>",
|
||||
)
|
||||
get_parser.add_argument(
|
||||
"--show-url",
|
||||
|
||||
@@ -1,10 +1,10 @@
|
||||
import argparse
|
||||
import logging
|
||||
|
||||
from .base import append_doc_link
|
||||
from .base import CmdBaseNoRepo
|
||||
from dvc.exceptions import DvcException
|
||||
|
||||
from . import completion
|
||||
from .base import CmdBaseNoRepo, append_doc_link
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
@@ -17,7 +17,7 @@ class CmdGetUrl(CmdBaseNoRepo):
|
||||
Repo.get_url(self.args.url, out=self.args.out)
|
||||
return 0
|
||||
except DvcException:
|
||||
logger.exception("failed to get '{}'".format(self.args.url))
|
||||
logger.exception(f"failed to get '{self.args.url}'")
|
||||
return 1
|
||||
|
||||
|
||||
@@ -34,6 +34,6 @@ def add_parser(subparsers, parent_parser):
|
||||
"url", help="See `dvc import-url -h` for full list of supported URLs."
|
||||
)
|
||||
get_parser.add_argument(
|
||||
"out", nargs="?", help="Destination path to put data to."
|
||||
)
|
||||
"out", nargs="?", help="Destination path to put data to.",
|
||||
).complete = completion.DIR
|
||||
get_parser.set_defaults(func=CmdGetUrl)
|
||||
|
||||
+49
-2
@@ -19,6 +19,9 @@ class CmdHookBase(CmdBaseNoRepo):
|
||||
|
||||
return self._run()
|
||||
|
||||
def _run(self):
|
||||
raise NotImplementedError
|
||||
|
||||
|
||||
class CmdPreCommit(CmdHookBase):
|
||||
def _run(self):
|
||||
@@ -28,7 +31,7 @@ class CmdPreCommit(CmdHookBase):
|
||||
|
||||
|
||||
class CmdPostCheckout(CmdHookBase):
|
||||
def run(self):
|
||||
def _run(self):
|
||||
# when we are running from pre-commit tool, it doesn't provide CLI
|
||||
# flags, but instead provides respective env vars that we could use.
|
||||
flag = os.environ.get("PRE_COMMIT_CHECKOUT_TYPE")
|
||||
@@ -52,12 +55,32 @@ class CmdPostCheckout(CmdHookBase):
|
||||
|
||||
|
||||
class CmdPrePush(CmdHookBase):
|
||||
def run(self):
|
||||
def _run(self):
|
||||
from dvc.main import main
|
||||
|
||||
return main(["push"])
|
||||
|
||||
|
||||
class CmdMergeDriver(CmdHookBase):
|
||||
def _run(self):
|
||||
from dvc.dvcfile import Dvcfile
|
||||
from dvc.repo import Repo
|
||||
|
||||
dvc = Repo()
|
||||
|
||||
try:
|
||||
with dvc.state:
|
||||
ancestor = Dvcfile(dvc, self.args.ancestor, verify=False)
|
||||
our = Dvcfile(dvc, self.args.our, verify=False)
|
||||
their = Dvcfile(dvc, self.args.their, verify=False)
|
||||
|
||||
our.merge(ancestor, their)
|
||||
|
||||
return 0
|
||||
finally:
|
||||
dvc.close()
|
||||
|
||||
|
||||
def add_parser(subparsers, parent_parser):
|
||||
GIT_HOOK_HELP = "Run GIT hook."
|
||||
|
||||
@@ -110,3 +133,27 @@ def add_parser(subparsers, parent_parser):
|
||||
"args", nargs="*", help="Arguments passed by GIT or pre-commit tool.",
|
||||
)
|
||||
pre_push_parser.set_defaults(func=CmdPrePush)
|
||||
|
||||
MERGE_DRIVER_HELP = "Run GIT merge driver."
|
||||
merge_driver_parser = git_hook_subparsers.add_parser(
|
||||
"merge-driver",
|
||||
parents=[parent_parser],
|
||||
description=MERGE_DRIVER_HELP,
|
||||
help=MERGE_DRIVER_HELP,
|
||||
)
|
||||
merge_driver_parser.add_argument(
|
||||
"--ancestor",
|
||||
required=True,
|
||||
help="Ancestor's version of the conflicting file.",
|
||||
)
|
||||
merge_driver_parser.add_argument(
|
||||
"--our",
|
||||
required=True,
|
||||
help="Current version of the conflicting file.",
|
||||
)
|
||||
merge_driver_parser.add_argument(
|
||||
"--their",
|
||||
required=True,
|
||||
help="Other branch's version of the conflicting file.",
|
||||
)
|
||||
merge_driver_parser.set_defaults(func=CmdMergeDriver)
|
||||
|
||||
+35
-6
@@ -1,11 +1,10 @@
|
||||
import argparse
|
||||
import logging
|
||||
|
||||
from dvc.command.base import append_doc_link
|
||||
from dvc.command.base import CmdBase
|
||||
from dvc.command import completion
|
||||
from dvc.command.base import CmdBase, append_doc_link
|
||||
from dvc.exceptions import DvcException
|
||||
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
@@ -16,7 +15,10 @@ class CmdImport(CmdBase):
|
||||
self.args.url,
|
||||
self.args.path,
|
||||
out=self.args.out,
|
||||
fname=self.args.file,
|
||||
rev=self.args.rev,
|
||||
no_exec=self.args.no_exec,
|
||||
desc=self.args.desc,
|
||||
)
|
||||
except DvcException:
|
||||
logger.exception(
|
||||
@@ -45,12 +47,39 @@ def add_parser(subparsers, parent_parser):
|
||||
"url", help="Location of DVC or Git repository to download from"
|
||||
)
|
||||
import_parser.add_argument(
|
||||
"path", help="Path to a file or directory within the repository"
|
||||
"path", help="Path to a file or directory within the repository",
|
||||
).complete = completion.FILE
|
||||
import_parser.add_argument(
|
||||
"-o",
|
||||
"--out",
|
||||
nargs="?",
|
||||
help="Destination path to download files to",
|
||||
metavar="<path>",
|
||||
).complete = completion.DIR
|
||||
import_parser.add_argument(
|
||||
"--rev",
|
||||
nargs="?",
|
||||
help="Git revision (e.g. SHA, branch, tag)",
|
||||
metavar="<commit>",
|
||||
)
|
||||
import_parser.add_argument(
|
||||
"-o", "--out", nargs="?", help="Destination path to download files to"
|
||||
"--file",
|
||||
help="Specify name of the DVC-file this command will generate.",
|
||||
metavar="<filename>",
|
||||
)
|
||||
import_parser.add_argument(
|
||||
"--rev", nargs="?", help="Git revision (e.g. SHA, branch, tag)"
|
||||
"--no-exec",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Only create DVC-file without actually downloading it.",
|
||||
)
|
||||
import_parser.add_argument(
|
||||
"--desc",
|
||||
type=str,
|
||||
metavar="<text>",
|
||||
help=(
|
||||
"User description of the data (optional). "
|
||||
"This doesn't affect any DVC operations."
|
||||
),
|
||||
)
|
||||
import_parser.set_defaults(func=CmdImport)
|
||||
|
||||
+34
-18
@@ -1,11 +1,10 @@
|
||||
import argparse
|
||||
import logging
|
||||
|
||||
from dvc.command.base import append_doc_link
|
||||
from dvc.command.base import CmdBase
|
||||
from dvc.command import completion
|
||||
from dvc.command.base import CmdBase, append_doc_link
|
||||
from dvc.exceptions import DvcException
|
||||
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
@@ -13,7 +12,11 @@ class CmdImportUrl(CmdBase):
|
||||
def run(self):
|
||||
try:
|
||||
self.repo.imp_url(
|
||||
self.args.url, out=self.args.out, fname=self.args.file
|
||||
self.args.url,
|
||||
out=self.args.out,
|
||||
fname=self.args.file,
|
||||
no_exec=self.args.no_exec,
|
||||
desc=self.args.desc,
|
||||
)
|
||||
except DvcException:
|
||||
logger.exception(
|
||||
@@ -40,25 +43,38 @@ def add_parser(subparsers, parent_parser):
|
||||
)
|
||||
import_parser.add_argument(
|
||||
"url",
|
||||
help="Supported urls:\n"
|
||||
"/path/to/file\n"
|
||||
"/path/to/directory\n"
|
||||
"C:\\\\path\\to\\file\n"
|
||||
"C:\\\\path\\to\\directory\n"
|
||||
help="Location of the data to download. Supported URLs:\n"
|
||||
"/absolute/path/to/file/or/dir\n"
|
||||
"relative/path/to/file/or/dir\n"
|
||||
"C:\\\\path\\to\\file\\or\\dir\n"
|
||||
"https://example.com/path/to/file\n"
|
||||
"s3://bucket/path/to/file\n"
|
||||
"s3://bucket/path/to/directory\n"
|
||||
"gs://bucket/path/to/file\n"
|
||||
"gs://bucket/path/to/directory\n"
|
||||
"s3://bucket/key/path\n"
|
||||
"gs://bucket/path/to/file/or/dir\n"
|
||||
"hdfs://example.com/path/to/file\n"
|
||||
"ssh://example.com:/path/to/file\n"
|
||||
"ssh://example.com:/path/to/directory\n"
|
||||
"remote://myremote/path/to/file (see `dvc remote`)",
|
||||
"ssh://example.com/absolute/path/to/file/or/dir\n"
|
||||
"remote://remote_name/path/to/file/or/dir (see `dvc remote`)",
|
||||
)
|
||||
import_parser.add_argument(
|
||||
"out", nargs="?", help="Destination path to put files to."
|
||||
"out", nargs="?", help="Destination path to put files to.",
|
||||
).complete = completion.DIR
|
||||
import_parser.add_argument(
|
||||
"--file",
|
||||
help="Specify name of the DVC-file this command will generate.",
|
||||
metavar="<filename>",
|
||||
).complete = completion.DIR
|
||||
import_parser.add_argument(
|
||||
"--no-exec",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Only create DVC-file without actually downloading it.",
|
||||
)
|
||||
import_parser.add_argument(
|
||||
"-f", "--file", help="Specify name of the DVC-file it generates."
|
||||
"--desc",
|
||||
type=str,
|
||||
metavar="<text>",
|
||||
help=(
|
||||
"User description of the data (optional). "
|
||||
"This doesn't affect any DVC operations."
|
||||
),
|
||||
)
|
||||
import_parser.set_defaults(func=CmdImportUrl)
|
||||
|
||||
+30
-4
@@ -1,17 +1,42 @@
|
||||
import argparse
|
||||
import logging
|
||||
|
||||
from dvc.command.base import append_doc_link
|
||||
from dvc.command.base import CmdBaseNoRepo
|
||||
import colorama
|
||||
|
||||
from dvc import analytics
|
||||
from dvc.command.base import CmdBaseNoRepo, append_doc_link
|
||||
from dvc.utils import boxify
|
||||
from dvc.utils import format_link as fmt_link
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
def _welcome_message():
|
||||
if analytics.is_enabled():
|
||||
logger.info(
|
||||
boxify(
|
||||
"DVC has enabled anonymous aggregate usage analytics.\n"
|
||||
"Read the analytics documentation (and how to opt-out) here:\n"
|
||||
+ fmt_link("https://dvc.org/doc/user-guide/analytics"),
|
||||
border_color="red",
|
||||
)
|
||||
)
|
||||
|
||||
msg = (
|
||||
"{yellow}What's next?{nc}\n"
|
||||
"{yellow}------------{nc}\n"
|
||||
f"- Check out the documentation: {fmt_link('https://dvc.org/doc')}\n"
|
||||
f"- Get help and share ideas: {fmt_link('https://dvc.org/chat')}\n"
|
||||
f"- Star us on GitHub: {fmt_link('https://github.com/iterative/dvc')}"
|
||||
).format(yellow=colorama.Fore.YELLOW, nc=colorama.Fore.RESET)
|
||||
|
||||
logger.info(msg)
|
||||
|
||||
|
||||
class CmdInit(CmdBaseNoRepo):
|
||||
def run(self):
|
||||
from dvc.repo import Repo
|
||||
from dvc.exceptions import InitError
|
||||
from dvc.repo import Repo
|
||||
|
||||
try:
|
||||
self.repo = Repo.init(
|
||||
@@ -21,6 +46,7 @@ class CmdInit(CmdBaseNoRepo):
|
||||
subdir=self.args.subdir,
|
||||
)
|
||||
self.config = self.repo.config
|
||||
_welcome_message()
|
||||
except InitError:
|
||||
logger.exception("failed to initiate DVC")
|
||||
return 1
|
||||
@@ -47,7 +73,7 @@ def add_parser(subparsers, parent_parser):
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Initiate DVC in directory that is "
|
||||
"not tracked by any scm tool (e.g. git).",
|
||||
"not tracked by any SCM tool (e.g. Git).",
|
||||
)
|
||||
init_parser.add_argument(
|
||||
"-f",
|
||||
|
||||
@@ -1,9 +1,8 @@
|
||||
import argparse
|
||||
import logging
|
||||
|
||||
from dvc.command.base import append_doc_link
|
||||
from dvc.command.base import CmdBase
|
||||
|
||||
from dvc.command.base import CmdBase, append_doc_link
|
||||
from dvc.exceptions import DvcException
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
@@ -12,7 +11,7 @@ class CmdInstall(CmdBase):
|
||||
def run(self):
|
||||
try:
|
||||
self.repo.install(self.args.use_pre_commit_tool)
|
||||
except Exception:
|
||||
except DvcException:
|
||||
logger.exception("failed to install DVC Git hooks")
|
||||
return 1
|
||||
return 0
|
||||
|
||||
@@ -1,61 +0,0 @@
|
||||
import argparse
|
||||
import logging
|
||||
|
||||
from dvc.command.base import append_doc_link
|
||||
from dvc.command.base import CmdBase
|
||||
from dvc.exceptions import DvcException
|
||||
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
class CmdLockBase(CmdBase):
|
||||
def _run(self, unlock):
|
||||
for target in self.args.targets:
|
||||
try:
|
||||
self.repo.lock_stage(target, unlock=unlock)
|
||||
except DvcException:
|
||||
logger.exception(
|
||||
"failed to {}lock '{}'".format(
|
||||
"un" if unlock else "", target
|
||||
)
|
||||
)
|
||||
|
||||
return 1
|
||||
return 0
|
||||
|
||||
|
||||
class CmdLock(CmdLockBase):
|
||||
def run(self):
|
||||
return self._run(False)
|
||||
|
||||
|
||||
class CmdUnlock(CmdLockBase):
|
||||
def run(self):
|
||||
return self._run(True)
|
||||
|
||||
|
||||
def add_parser(subparsers, parent_parser):
|
||||
LOCK_HELP = "Lock DVC-files."
|
||||
lock_parser = subparsers.add_parser(
|
||||
"lock",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(LOCK_HELP, "lock"),
|
||||
help=LOCK_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
lock_parser.add_argument("targets", nargs="+", help="DVC-files to lock.")
|
||||
lock_parser.set_defaults(func=CmdLock)
|
||||
|
||||
UNLOCK_HELP = "Unlock DVC-files."
|
||||
unlock_parser = subparsers.add_parser(
|
||||
"unlock",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(UNLOCK_HELP, "unlock"),
|
||||
help=UNLOCK_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
unlock_parser.add_argument(
|
||||
"targets", nargs="+", help="DVC-files to unlock."
|
||||
)
|
||||
unlock_parser.set_defaults(func=CmdUnlock)
|
||||
@@ -2,12 +2,11 @@ import argparse
|
||||
import logging
|
||||
import sys
|
||||
|
||||
from dvc.command.base import append_doc_link
|
||||
from dvc.command.base import CmdBaseNoRepo
|
||||
from dvc.command import completion
|
||||
from dvc.command.base import CmdBaseNoRepo, append_doc_link
|
||||
from dvc.command.ls.ls_colors import LsColors
|
||||
from dvc.exceptions import DvcException
|
||||
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
@@ -33,14 +32,14 @@ class CmdList(CmdBaseNoRepo):
|
||||
self.args.path,
|
||||
rev=self.args.rev,
|
||||
recursive=self.args.recursive,
|
||||
outs_only=self.args.outs_only,
|
||||
dvc_only=self.args.dvc_only,
|
||||
)
|
||||
if entries:
|
||||
entries = _prettify(entries, sys.stdout.isatty())
|
||||
logger.info("\n".join(entries))
|
||||
return 0
|
||||
except DvcException:
|
||||
logger.exception("failed to list '{}'".format(self.args.url))
|
||||
logger.exception(f"failed to list '{self.args.url}'")
|
||||
return 1
|
||||
|
||||
|
||||
@@ -64,14 +63,17 @@ def add_parser(subparsers, parent_parser):
|
||||
help="Recursively list files.",
|
||||
)
|
||||
list_parser.add_argument(
|
||||
"--outs-only", action="store_true", help="Show only DVC outputs."
|
||||
"--dvc-only", action="store_true", help="Show only DVC outputs."
|
||||
)
|
||||
list_parser.add_argument(
|
||||
"--rev", nargs="?", help="Git revision (e.g. branch, tag, SHA)"
|
||||
"--rev",
|
||||
nargs="?",
|
||||
help="Git revision (e.g. SHA, branch, tag)",
|
||||
metavar="<commit>",
|
||||
)
|
||||
list_parser.add_argument(
|
||||
"path",
|
||||
nargs="?",
|
||||
help="Path to directory within the repository to list outputs for",
|
||||
)
|
||||
).complete = completion.DIR
|
||||
list_parser.set_defaults(func=CmdList)
|
||||
|
||||
@@ -1,7 +1,7 @@
|
||||
import os
|
||||
|
||||
|
||||
class LsColors(object):
|
||||
class LsColors:
|
||||
default = "rs=0:di=01;34:ex=01;32"
|
||||
|
||||
def __init__(self, lscolors=None):
|
||||
@@ -45,4 +45,4 @@ class LsColors(object):
|
||||
if not val:
|
||||
return text
|
||||
rs = self._codes.get("rs", 0)
|
||||
return "\033[{}m{}\033[{}m".format(val, text, rs)
|
||||
return f"\033[{val}m{text}\033[{rs}m"
|
||||
|
||||
+131
-172
@@ -1,147 +1,123 @@
|
||||
import argparse
|
||||
import logging
|
||||
|
||||
from dvc.command.base import append_doc_link
|
||||
from dvc.command.base import CmdBase
|
||||
from dvc.command.base import fix_subparsers
|
||||
from dvc.exceptions import BadMetricError
|
||||
from dvc.exceptions import DvcException
|
||||
|
||||
from dvc.command import completion
|
||||
from dvc.command.base import CmdBase, append_doc_link, fix_subparsers
|
||||
from dvc.exceptions import BadMetricError, DvcException
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
def show_metrics(metrics, all_branches=False, all_tags=False):
|
||||
"""
|
||||
Args:
|
||||
metrics (list): Where each element is either a `list`
|
||||
if an xpath was specified, otherwise a `str`
|
||||
"""
|
||||
DEFAULT_PRECISION = 5
|
||||
|
||||
|
||||
def _show_metrics(
|
||||
metrics, all_branches=False, all_tags=False, all_commits=False
|
||||
):
|
||||
from dvc.utils.diff import format_dict
|
||||
from dvc.utils.flatten import flatten
|
||||
|
||||
# When `metrics` contains a `None` key, it means that some files
|
||||
# specified as `targets` in `repo.metrics.show` didn't contain any metrics.
|
||||
missing = metrics.pop(None, None)
|
||||
|
||||
lines = []
|
||||
for branch, val in metrics.items():
|
||||
if all_branches or all_tags:
|
||||
logger.info("{branch}:".format(branch=branch))
|
||||
if all_branches or all_tags or all_commits:
|
||||
lines.append(f"{branch}:")
|
||||
|
||||
for fname, metric in val.items():
|
||||
if isinstance(metric, dict):
|
||||
lines = list(metric.values())
|
||||
elif isinstance(metric, list):
|
||||
lines = metric
|
||||
else:
|
||||
lines = metric.splitlines()
|
||||
if not isinstance(metric, dict):
|
||||
lines.append("\t{}: {}".format(fname, str(metric)))
|
||||
continue
|
||||
|
||||
if len(lines) > 1:
|
||||
logger.info("\t{fname}:".format(fname=fname))
|
||||
|
||||
for line in lines:
|
||||
logger.info("\t\t{content}".format(content=line))
|
||||
|
||||
else:
|
||||
logger.info("\t{}: {}".format(fname, metric))
|
||||
lines.append(f"\t{fname}:")
|
||||
for key, value in flatten(format_dict(metric)).items():
|
||||
lines.append(f"\t\t{key}: {value}")
|
||||
|
||||
if missing:
|
||||
raise BadMetricError(missing)
|
||||
|
||||
return "\n".join(lines)
|
||||
|
||||
class CmdMetricsShow(CmdBase):
|
||||
|
||||
class CmdMetricsBase(CmdBase):
|
||||
UNINITIALIZED = True
|
||||
|
||||
|
||||
class CmdMetricsShow(CmdMetricsBase):
|
||||
def run(self):
|
||||
try:
|
||||
metrics = self.repo.metrics.show(
|
||||
self.args.targets,
|
||||
typ=self.args.type,
|
||||
xpath=self.args.xpath,
|
||||
all_branches=self.args.all_branches,
|
||||
all_tags=self.args.all_tags,
|
||||
all_commits=self.args.all_commits,
|
||||
recursive=self.args.recursive,
|
||||
)
|
||||
|
||||
show_metrics(metrics, self.args.all_branches, self.args.all_tags)
|
||||
if self.args.show_json:
|
||||
import json
|
||||
|
||||
logger.info(json.dumps(metrics))
|
||||
else:
|
||||
table = _show_metrics(
|
||||
metrics,
|
||||
self.args.all_branches,
|
||||
self.args.all_tags,
|
||||
self.args.all_commits,
|
||||
)
|
||||
if table:
|
||||
logger.info(table)
|
||||
except DvcException:
|
||||
logger.exception("failed to show metrics")
|
||||
logger.exception("")
|
||||
return 1
|
||||
|
||||
return 0
|
||||
|
||||
|
||||
class CmdMetricsModify(CmdBase):
|
||||
def run(self):
|
||||
try:
|
||||
self.repo.metrics.modify(
|
||||
self.args.path, typ=self.args.type, xpath=self.args.xpath
|
||||
)
|
||||
except DvcException:
|
||||
logger.exception("failed to modify metric file settings")
|
||||
return 1
|
||||
def _show_diff(diff, markdown=False, no_path=False, precision=None):
|
||||
from collections import OrderedDict
|
||||
|
||||
return 0
|
||||
from dvc.utils.diff import table
|
||||
|
||||
if precision is None:
|
||||
precision = DEFAULT_PRECISION
|
||||
|
||||
class CmdMetricsAdd(CmdBase):
|
||||
def run(self):
|
||||
try:
|
||||
self.repo.metrics.add(
|
||||
self.args.path, self.args.type, self.args.xpath
|
||||
)
|
||||
except DvcException:
|
||||
msg = "failed to add metric file '{}'".format(self.args.path)
|
||||
logger.exception(msg)
|
||||
return 1
|
||||
def _round(val):
|
||||
if isinstance(val, float):
|
||||
return round(val, precision)
|
||||
|
||||
return 0
|
||||
return val
|
||||
|
||||
|
||||
class CmdMetricsRemove(CmdBase):
|
||||
def run(self):
|
||||
try:
|
||||
self.repo.metrics.remove(self.args.path)
|
||||
except DvcException:
|
||||
msg = "failed to remove metric file '{}'".format(self.args.path)
|
||||
logger.exception(msg)
|
||||
return 1
|
||||
|
||||
return 0
|
||||
|
||||
|
||||
def _show_diff(diff):
|
||||
from texttable import Texttable
|
||||
|
||||
if not diff:
|
||||
return "No changes."
|
||||
|
||||
table = Texttable()
|
||||
|
||||
# remove borders to make it easier for users to copy stuff
|
||||
table.set_chars(("", "", "", ""))
|
||||
table.set_deco(0)
|
||||
|
||||
rows = [["Path", "Metric", "Value", "Change"]]
|
||||
rows = []
|
||||
for fname, mdiff in diff.items():
|
||||
for metric, change in mdiff.items():
|
||||
rows.append(
|
||||
[
|
||||
fname,
|
||||
metric,
|
||||
change["new"],
|
||||
change.get("diff", "diff not supported"),
|
||||
]
|
||||
)
|
||||
table.add_rows(rows)
|
||||
return table.draw()
|
||||
sorted_mdiff = OrderedDict(sorted(mdiff.items()))
|
||||
for metric, change in sorted_mdiff.items():
|
||||
row = [] if no_path else [fname]
|
||||
row.append(metric)
|
||||
row.append(_round(change.get("old")))
|
||||
row.append(_round(change["new"]))
|
||||
row.append(_round(change.get("diff")))
|
||||
rows.append(row)
|
||||
|
||||
header = [] if no_path else ["Path"]
|
||||
header.append("Metric")
|
||||
header.extend(["Old", "New"])
|
||||
header.append("Change")
|
||||
|
||||
return table(header, rows, markdown)
|
||||
|
||||
|
||||
class CmdMetricsDiff(CmdBase):
|
||||
class CmdMetricsDiff(CmdMetricsBase):
|
||||
def run(self):
|
||||
try:
|
||||
diff = self.repo.metrics.diff(
|
||||
a_rev=self.args.a_rev,
|
||||
b_rev=self.args.b_rev,
|
||||
targets=self.args.targets,
|
||||
typ=self.args.type,
|
||||
xpath=self.args.xpath,
|
||||
recursive=self.args.recursive,
|
||||
all=self.args.all,
|
||||
)
|
||||
|
||||
if self.args.show_json:
|
||||
@@ -149,7 +125,14 @@ class CmdMetricsDiff(CmdBase):
|
||||
|
||||
logger.info(json.dumps(diff))
|
||||
else:
|
||||
logger.info(_show_diff(diff))
|
||||
table = _show_diff(
|
||||
diff,
|
||||
self.args.show_md,
|
||||
self.args.no_path,
|
||||
precision=self.args.precision,
|
||||
)
|
||||
if table:
|
||||
logger.info(table)
|
||||
|
||||
except DvcException:
|
||||
logger.exception("failed to show metrics diff")
|
||||
@@ -159,7 +142,7 @@ class CmdMetricsDiff(CmdBase):
|
||||
|
||||
|
||||
def add_parser(subparsers, parent_parser):
|
||||
METRICS_HELP = "Commands to add, manage, collect, and display metrics."
|
||||
METRICS_HELP = "Commands to display and compare metrics."
|
||||
|
||||
metrics_parser = subparsers.add_parser(
|
||||
"metrics",
|
||||
@@ -187,20 +170,11 @@ def add_parser(subparsers, parent_parser):
|
||||
metrics_show_parser.add_argument(
|
||||
"targets",
|
||||
nargs="*",
|
||||
help="Metric files or directories (see -R) to show",
|
||||
)
|
||||
metrics_show_parser.add_argument(
|
||||
"-t",
|
||||
"--type",
|
||||
help=(
|
||||
"Type of metrics (json/tsv/htsv/csv/hcsv). "
|
||||
"It can be detected by the file extension automatically. "
|
||||
"Unsupported types will be treated as raw."
|
||||
"Limit command scope to these metrics files. Using -R, "
|
||||
"directories to search metrics files in can also be given."
|
||||
),
|
||||
)
|
||||
metrics_show_parser.add_argument(
|
||||
"-x", "--xpath", help="json/tsv/htsv/csv/hcsv path."
|
||||
)
|
||||
).complete = completion.FILE
|
||||
metrics_show_parser.add_argument(
|
||||
"-a",
|
||||
"--all-branches",
|
||||
@@ -215,6 +189,18 @@ def add_parser(subparsers, parent_parser):
|
||||
default=False,
|
||||
help="Show metrics for all tags.",
|
||||
)
|
||||
metrics_show_parser.add_argument(
|
||||
"--all-commits",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Show metrics for all commits.",
|
||||
)
|
||||
metrics_show_parser.add_argument(
|
||||
"--show-json",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Show output in JSON format.",
|
||||
)
|
||||
metrics_show_parser.add_argument(
|
||||
"-R",
|
||||
"--recursive",
|
||||
@@ -222,58 +208,15 @@ def add_parser(subparsers, parent_parser):
|
||||
default=False,
|
||||
help=(
|
||||
"If any target is a directory, recursively search and process "
|
||||
"metric files."
|
||||
"metrics files."
|
||||
),
|
||||
)
|
||||
metrics_show_parser.set_defaults(func=CmdMetricsShow)
|
||||
|
||||
METRICS_ADD_HELP = "Mark a DVC-tracked file as a metric."
|
||||
metrics_add_parser = metrics_subparsers.add_parser(
|
||||
"add",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(METRICS_ADD_HELP, "metrics/add"),
|
||||
help=METRICS_ADD_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
METRICS_DIFF_HELP = (
|
||||
"Show changes in metrics between commits in the DVC repository, or "
|
||||
"between a commit and the workspace."
|
||||
)
|
||||
metrics_add_parser.add_argument(
|
||||
"-t", "--type", help="Type of metrics (raw/json/tsv/htsv/csv/hcsv)."
|
||||
)
|
||||
metrics_add_parser.add_argument(
|
||||
"-x", "--xpath", help="json/tsv/htsv/csv/hcsv path."
|
||||
)
|
||||
metrics_add_parser.add_argument("path", help="Path to a metric file.")
|
||||
metrics_add_parser.set_defaults(func=CmdMetricsAdd)
|
||||
|
||||
METRICS_MODIFY_HELP = "Modify metric default formatting."
|
||||
metrics_modify_parser = metrics_subparsers.add_parser(
|
||||
"modify",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(METRICS_MODIFY_HELP, "metrics/modify"),
|
||||
help=METRICS_MODIFY_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
metrics_modify_parser.add_argument(
|
||||
"-t", "--type", help="Type of metrics (raw/json/tsv/htsv/csv/hcsv)."
|
||||
)
|
||||
metrics_modify_parser.add_argument(
|
||||
"-x", "--xpath", help="json/tsv/htsv/csv/hcsv path."
|
||||
)
|
||||
metrics_modify_parser.add_argument("path", help="Path to a metric file.")
|
||||
metrics_modify_parser.set_defaults(func=CmdMetricsModify)
|
||||
|
||||
METRICS_REMOVE_HELP = "Remove metric mark on a DVC-tracked file."
|
||||
metrics_remove_parser = metrics_subparsers.add_parser(
|
||||
"remove",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(METRICS_REMOVE_HELP, "metrics/remove"),
|
||||
help=METRICS_REMOVE_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
metrics_remove_parser.add_argument("path", help="Path to a metric file.")
|
||||
metrics_remove_parser.set_defaults(func=CmdMetricsRemove)
|
||||
|
||||
METRICS_DIFF_HELP = "Show changes in metrics between commits"
|
||||
" in the DVC repository, or between a commit and the workspace."
|
||||
metrics_diff_parser = metrics_subparsers.add_parser(
|
||||
"diff",
|
||||
parents=[parent_parser],
|
||||
@@ -287,28 +230,17 @@ def add_parser(subparsers, parent_parser):
|
||||
metrics_diff_parser.add_argument(
|
||||
"b_rev",
|
||||
nargs="?",
|
||||
help=("New Git commit to compare (defaults to the current workspace)"),
|
||||
help="New Git commit to compare (defaults to the current workspace)",
|
||||
)
|
||||
metrics_diff_parser.add_argument(
|
||||
"--targets",
|
||||
nargs="*",
|
||||
help=(
|
||||
"Metric files or directories (see -R) to show diff for. "
|
||||
"Shows diff for all metric files by default."
|
||||
"Limit command scope to these metrics files. Using -R, "
|
||||
"directories to search metrics files in can also be given."
|
||||
),
|
||||
)
|
||||
metrics_diff_parser.add_argument(
|
||||
"-t",
|
||||
"--type",
|
||||
help=(
|
||||
"Type of metrics (json/tsv/htsv/csv/hcsv). "
|
||||
"It can be detected by the file extension automatically. "
|
||||
"Unsupported types will be treated as raw."
|
||||
),
|
||||
)
|
||||
metrics_diff_parser.add_argument(
|
||||
"-x", "--xpath", help="json/tsv/htsv/csv/hcsv path."
|
||||
)
|
||||
metavar="<paths>",
|
||||
).complete = completion.FILE
|
||||
metrics_diff_parser.add_argument(
|
||||
"-R",
|
||||
"--recursive",
|
||||
@@ -316,13 +248,40 @@ def add_parser(subparsers, parent_parser):
|
||||
default=False,
|
||||
help=(
|
||||
"If any target is a directory, recursively search and process "
|
||||
"metric files."
|
||||
"metrics files."
|
||||
),
|
||||
)
|
||||
metrics_diff_parser.add_argument(
|
||||
"--all",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Show unchanged metrics as well.",
|
||||
)
|
||||
metrics_diff_parser.add_argument(
|
||||
"--show-json",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Show output in JSON format.",
|
||||
)
|
||||
metrics_diff_parser.add_argument(
|
||||
"--show-md",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Show tabulated output in the Markdown format (GFM).",
|
||||
)
|
||||
metrics_diff_parser.add_argument(
|
||||
"--no-path",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Don't show metric path.",
|
||||
)
|
||||
metrics_diff_parser.add_argument(
|
||||
"--precision",
|
||||
type=int,
|
||||
help=(
|
||||
"Round metrics to `n` digits precision after the decimal point. "
|
||||
f"Rounds to {DEFAULT_PRECISION} digits by default."
|
||||
),
|
||||
metavar="<n>",
|
||||
)
|
||||
metrics_diff_parser.set_defaults(func=CmdMetricsDiff)
|
||||
|
||||
+7
-6
@@ -1,11 +1,10 @@
|
||||
import argparse
|
||||
import logging
|
||||
|
||||
from dvc.command.base import append_doc_link
|
||||
from dvc.command.base import CmdBase
|
||||
from dvc.command import completion
|
||||
from dvc.command.base import CmdBase, append_doc_link
|
||||
from dvc.exceptions import DvcException
|
||||
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
@@ -38,7 +37,9 @@ def add_parser(subparsers, parent_parser):
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
move_parser.add_argument(
|
||||
"src", help="Source path to a data file or directory."
|
||||
)
|
||||
move_parser.add_argument("dst", help="Destination path.")
|
||||
"src", help="Source path to a data file or directory.",
|
||||
).complete = completion.FILE
|
||||
move_parser.add_argument(
|
||||
"dst", help="Destination path.",
|
||||
).complete = completion.FILE
|
||||
move_parser.set_defaults(func=CmdMove)
|
||||
|
||||
@@ -0,0 +1,118 @@
|
||||
import argparse
|
||||
import logging
|
||||
from collections import OrderedDict
|
||||
|
||||
from dvc.command.base import CmdBase, append_doc_link, fix_subparsers
|
||||
from dvc.exceptions import DvcException
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
def _show_diff(diff, markdown=False, no_path=False):
|
||||
from dvc.utils.diff import table
|
||||
|
||||
rows = []
|
||||
for fname, pdiff in diff.items():
|
||||
sorted_pdiff = OrderedDict(sorted(pdiff.items()))
|
||||
for param, change in sorted_pdiff.items():
|
||||
row = [] if no_path else [fname]
|
||||
row.append(param)
|
||||
row.append(change["old"])
|
||||
row.append(change["new"])
|
||||
rows.append(row)
|
||||
|
||||
header = [] if no_path else ["Path"]
|
||||
header.append("Param")
|
||||
header.append("Old")
|
||||
header.append("New")
|
||||
|
||||
return table(header, rows, markdown)
|
||||
|
||||
|
||||
class CmdParamsDiff(CmdBase):
|
||||
def run(self):
|
||||
try:
|
||||
diff = self.repo.params.diff(
|
||||
a_rev=self.args.a_rev,
|
||||
b_rev=self.args.b_rev,
|
||||
all=self.args.all,
|
||||
)
|
||||
|
||||
if self.args.show_json:
|
||||
import json
|
||||
|
||||
logger.info(json.dumps(diff))
|
||||
else:
|
||||
table = _show_diff(diff, self.args.show_md, self.args.no_path)
|
||||
if table:
|
||||
logger.info(table)
|
||||
|
||||
except DvcException:
|
||||
logger.exception("failed to show params diff")
|
||||
return 1
|
||||
|
||||
return 0
|
||||
|
||||
|
||||
def add_parser(subparsers, parent_parser):
|
||||
PARAMS_HELP = "Commands to display params."
|
||||
|
||||
params_parser = subparsers.add_parser(
|
||||
"params",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(PARAMS_HELP, "params"),
|
||||
help=PARAMS_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
|
||||
params_subparsers = params_parser.add_subparsers(
|
||||
dest="cmd",
|
||||
help="Use `dvc params CMD --help` to display command-specific help.",
|
||||
)
|
||||
|
||||
fix_subparsers(params_subparsers)
|
||||
|
||||
PARAMS_DIFF_HELP = (
|
||||
"Show changes in params between commits in the DVC repository, or "
|
||||
"between a commit and the workspace."
|
||||
)
|
||||
params_diff_parser = params_subparsers.add_parser(
|
||||
"diff",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(PARAMS_DIFF_HELP, "params/diff"),
|
||||
help=PARAMS_DIFF_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
params_diff_parser.add_argument(
|
||||
"a_rev", nargs="?", help="Old Git commit to compare (defaults to HEAD)"
|
||||
)
|
||||
params_diff_parser.add_argument(
|
||||
"b_rev",
|
||||
nargs="?",
|
||||
help=("New Git commit to compare (defaults to the current workspace)"),
|
||||
)
|
||||
params_diff_parser.add_argument(
|
||||
"--all",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Show unchanged params as well.",
|
||||
)
|
||||
params_diff_parser.add_argument(
|
||||
"--show-json",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Show output in JSON format.",
|
||||
)
|
||||
params_diff_parser.add_argument(
|
||||
"--show-md",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Show tabulated output in the Markdown format (GFM).",
|
||||
)
|
||||
params_diff_parser.add_argument(
|
||||
"--no-path",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Don't show params path.",
|
||||
)
|
||||
params_diff_parser.set_defaults(func=CmdParamsDiff)
|
||||
@@ -1,242 +0,0 @@
|
||||
import argparse
|
||||
import logging
|
||||
|
||||
from dvc.command.base import CmdBase, append_doc_link, fix_subparsers
|
||||
from dvc.exceptions import DvcException
|
||||
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
class CmdPipelineShow(CmdBase):
|
||||
def _show(self, target, commands, outs, locked):
|
||||
import networkx
|
||||
from dvc.stage import Stage
|
||||
|
||||
stage = Stage.load(self.repo, target)
|
||||
G = self.repo.graph
|
||||
stages = networkx.dfs_postorder_nodes(G, stage)
|
||||
|
||||
if locked:
|
||||
stages = [s for s in stages if s.locked]
|
||||
|
||||
for stage in stages:
|
||||
if commands:
|
||||
if stage.cmd is None:
|
||||
continue
|
||||
logger.info(stage.cmd)
|
||||
elif outs:
|
||||
for out in stage.outs:
|
||||
logger.info(str(out))
|
||||
else:
|
||||
logger.info(stage.path_in_repo)
|
||||
|
||||
def _build_graph(self, target, commands, outs):
|
||||
import networkx
|
||||
from dvc.stage import Stage
|
||||
from dvc.repo.graph import get_pipeline
|
||||
|
||||
target_stage = Stage.load(self.repo, target)
|
||||
G = get_pipeline(self.repo.pipelines, target_stage)
|
||||
|
||||
nodes = set()
|
||||
for stage in networkx.dfs_preorder_nodes(G, target_stage):
|
||||
if commands:
|
||||
if stage.cmd is None:
|
||||
continue
|
||||
nodes.add(stage.cmd)
|
||||
elif outs:
|
||||
for out in stage.outs:
|
||||
nodes.add(str(out))
|
||||
else:
|
||||
nodes.add(stage.relpath)
|
||||
|
||||
edges = []
|
||||
for from_stage, to_stage in networkx.edge_dfs(G, target_stage):
|
||||
if commands:
|
||||
if to_stage.cmd is None:
|
||||
continue
|
||||
edges.append((from_stage.cmd, to_stage.cmd))
|
||||
elif outs:
|
||||
for from_out in from_stage.outs:
|
||||
for to_out in to_stage.outs:
|
||||
edges.append((str(from_out), str(to_out)))
|
||||
else:
|
||||
edges.append((from_stage.relpath, to_stage.relpath))
|
||||
|
||||
return list(nodes), edges, networkx.is_tree(G)
|
||||
|
||||
def _show_ascii(self, target, commands, outs):
|
||||
from dvc.dagascii import draw
|
||||
|
||||
nodes, edges, _ = self._build_graph(target, commands, outs)
|
||||
|
||||
if not nodes:
|
||||
return
|
||||
|
||||
draw(nodes, edges)
|
||||
|
||||
def _show_dependencies_tree(self, target, commands, outs):
|
||||
from treelib import Tree
|
||||
|
||||
nodes, edges, is_tree = self._build_graph(target, commands, outs)
|
||||
if not nodes:
|
||||
return
|
||||
if not is_tree:
|
||||
raise DvcException(
|
||||
"DAG is not a tree, can not print it in tree-structure way, "
|
||||
"please use --ascii instead"
|
||||
)
|
||||
|
||||
tree = Tree()
|
||||
tree.create_node(target, target) # Root node
|
||||
observe_list = [target]
|
||||
while len(observe_list) > 0:
|
||||
current_root = observe_list[0]
|
||||
for edge in edges:
|
||||
if edge[0] == current_root:
|
||||
tree.create_node(edge[1], edge[1], parent=current_root)
|
||||
observe_list.append(edge[1])
|
||||
observe_list.pop(0)
|
||||
tree.show()
|
||||
|
||||
def _write_dot(self, target, commands, outs):
|
||||
import io
|
||||
import networkx
|
||||
from networkx.drawing.nx_pydot import write_dot
|
||||
|
||||
_, edges, _ = self._build_graph(target, commands, outs)
|
||||
edges = [edge[::-1] for edge in edges]
|
||||
|
||||
simple_g = networkx.DiGraph()
|
||||
simple_g.add_edges_from(edges)
|
||||
|
||||
dot_file = io.StringIO()
|
||||
write_dot(simple_g, dot_file)
|
||||
logger.info(dot_file.getvalue())
|
||||
|
||||
def run(self):
|
||||
if not self.args.targets:
|
||||
self.args.targets = self.default_targets
|
||||
|
||||
for target in self.args.targets:
|
||||
try:
|
||||
if self.args.ascii:
|
||||
self._show_ascii(
|
||||
target, self.args.commands, self.args.outs
|
||||
)
|
||||
elif self.args.dot:
|
||||
self._write_dot(target, self.args.commands, self.args.outs)
|
||||
elif self.args.tree:
|
||||
self._show_dependencies_tree(
|
||||
target, self.args.commands, self.args.outs
|
||||
)
|
||||
else:
|
||||
self._show(
|
||||
target,
|
||||
self.args.commands,
|
||||
self.args.outs,
|
||||
self.args.locked,
|
||||
)
|
||||
except DvcException:
|
||||
msg = "failed to show pipeline for '{}'".format(target)
|
||||
logger.exception(msg)
|
||||
return 1
|
||||
return 0
|
||||
|
||||
|
||||
class CmdPipelineList(CmdBase):
|
||||
def run(self):
|
||||
pipelines = self.repo.pipelines
|
||||
for pipeline in pipelines:
|
||||
for stage in pipeline:
|
||||
logger.info(stage.relpath)
|
||||
if len(pipeline) != 0:
|
||||
logger.info("=" * 80)
|
||||
logger.info("{} pipelines total".format(len(pipelines)))
|
||||
|
||||
return 0
|
||||
|
||||
|
||||
def add_parser(subparsers, parent_parser):
|
||||
PIPELINE_HELP = "Manage pipelines."
|
||||
pipeline_parser = subparsers.add_parser(
|
||||
"pipeline",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(PIPELINE_HELP, "pipeline"),
|
||||
help=PIPELINE_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
|
||||
pipeline_subparsers = pipeline_parser.add_subparsers(
|
||||
dest="cmd",
|
||||
help="Use `dvc pipeline CMD --help` for command-specific help.",
|
||||
)
|
||||
|
||||
fix_subparsers(pipeline_subparsers)
|
||||
|
||||
PIPELINE_SHOW_HELP = "Show stages in a pipeline."
|
||||
pipeline_show_parser = pipeline_subparsers.add_parser(
|
||||
"show",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(PIPELINE_SHOW_HELP, "pipeline/show"),
|
||||
help=PIPELINE_SHOW_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
pipeline_show_group = pipeline_show_parser.add_mutually_exclusive_group()
|
||||
pipeline_show_group.add_argument(
|
||||
"-c",
|
||||
"--commands",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Print commands instead of paths to DVC-files.",
|
||||
)
|
||||
pipeline_show_group.add_argument(
|
||||
"-o",
|
||||
"--outs",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Print output files instead of paths to DVC-files.",
|
||||
)
|
||||
pipeline_show_parser.add_argument(
|
||||
"-l",
|
||||
"--locked",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Print locked DVC stages",
|
||||
)
|
||||
pipeline_show_parser.add_argument(
|
||||
"--ascii",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Output DAG as ASCII.",
|
||||
)
|
||||
pipeline_show_parser.add_argument(
|
||||
"--dot",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Print DAG with .dot format.",
|
||||
)
|
||||
pipeline_show_parser.add_argument(
|
||||
"--tree",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Output DAG as Dependencies Tree.",
|
||||
)
|
||||
pipeline_show_parser.add_argument(
|
||||
"targets",
|
||||
nargs="*",
|
||||
help="DVC-files to show pipeline for. Optional. "
|
||||
"(Finds all DVC-files in the workspace by default.)",
|
||||
)
|
||||
pipeline_show_parser.set_defaults(func=CmdPipelineShow)
|
||||
|
||||
PIPELINE_LIST_HELP = "List connected groups of stages (pipelines)."
|
||||
pipeline_list_parser = pipeline_subparsers.add_parser(
|
||||
"list",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(PIPELINE_LIST_HELP, "pipeline/list"),
|
||||
help=PIPELINE_LIST_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
pipeline_list_parser.set_defaults(func=CmdPipelineList)
|
||||
@@ -0,0 +1,252 @@
|
||||
import argparse
|
||||
import logging
|
||||
import os
|
||||
|
||||
from dvc.command import completion
|
||||
from dvc.command.base import CmdBase, append_doc_link, fix_subparsers
|
||||
from dvc.exceptions import DvcException
|
||||
from dvc.schema import PLOT_PROPS
|
||||
from dvc.utils import format_link
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
PAGE_HTML = """<!DOCTYPE html>
|
||||
<html>
|
||||
<head>
|
||||
<title>DVC Plot</title>
|
||||
<script src="https://cdn.jsdelivr.net/npm/[email protected]"></script>
|
||||
<script src="https://cdn.jsdelivr.net/npm/[email protected]"></script>
|
||||
<script src="https://cdn.jsdelivr.net/npm/[email protected]"></script>
|
||||
</head>
|
||||
<body>
|
||||
{divs}
|
||||
</body>
|
||||
</html>"""
|
||||
|
||||
DIV_HTML = """<div id = "{id}"></div>
|
||||
<script type = "text/javascript">
|
||||
var spec = {vega_json};
|
||||
vegaEmbed('#{id}', spec);
|
||||
</script>"""
|
||||
|
||||
|
||||
class CmdPlots(CmdBase):
|
||||
def _func(self, *args, **kwargs):
|
||||
raise NotImplementedError
|
||||
|
||||
def _props(self):
|
||||
# Pass only props specified by user, to not shadow ones from plot def
|
||||
props = {p: getattr(self.args, p) for p in PLOT_PROPS}
|
||||
return {k: v for k, v in props.items() if v is not None}
|
||||
|
||||
def run(self):
|
||||
if self.args.show_vega:
|
||||
if not self.args.targets:
|
||||
logger.error("please specify a target for `--show-vega`")
|
||||
return 1
|
||||
if len(self.args.targets) > 1:
|
||||
logger.error(
|
||||
"you can only specify one target for `--show-vega`"
|
||||
)
|
||||
return 1
|
||||
|
||||
try:
|
||||
plots = self._func(targets=self.args.targets, props=self._props())
|
||||
|
||||
if self.args.show_vega:
|
||||
target = self.args.targets[0]
|
||||
logger.info(plots[target])
|
||||
return 0
|
||||
|
||||
divs = [
|
||||
DIV_HTML.format(id=f"plot{i}", vega_json=plot)
|
||||
for i, plot in enumerate(plots.values())
|
||||
]
|
||||
html = PAGE_HTML.format(divs="\n".join(divs))
|
||||
path = self.args.out or "plots.html"
|
||||
|
||||
path = os.path.join(os.getcwd(), path)
|
||||
with open(path, "w") as fobj:
|
||||
fobj.write(html)
|
||||
|
||||
logger.info(f"file://{path}")
|
||||
|
||||
except DvcException:
|
||||
logger.exception("")
|
||||
return 1
|
||||
|
||||
return 0
|
||||
|
||||
|
||||
class CmdPlotsShow(CmdPlots):
|
||||
UNINITIALIZED = True
|
||||
|
||||
def _func(self, *args, **kwargs):
|
||||
return self.repo.plots.show(*args, **kwargs)
|
||||
|
||||
|
||||
class CmdPlotsDiff(CmdPlots):
|
||||
UNINITIALIZED = True
|
||||
|
||||
def _func(self, *args, **kwargs):
|
||||
return self.repo.plots.diff(
|
||||
*args,
|
||||
revs=self.args.revisions,
|
||||
experiment=self.args.experiment,
|
||||
**kwargs,
|
||||
)
|
||||
|
||||
|
||||
class CmdPlotsModify(CmdPlots):
|
||||
def run(self):
|
||||
self.repo.plots.modify(
|
||||
self.args.target, props=self._props(), unset=self.args.unset,
|
||||
)
|
||||
return 0
|
||||
|
||||
|
||||
def add_parser(subparsers, parent_parser):
|
||||
PLOTS_HELP = (
|
||||
"Commands to visualize and compare plot metrics in structured files "
|
||||
"(JSON, YAML, CSV, TSV)"
|
||||
)
|
||||
|
||||
plots_parser = subparsers.add_parser(
|
||||
"plots",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(PLOTS_HELP, "plots"),
|
||||
help=PLOTS_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
plots_subparsers = plots_parser.add_subparsers(
|
||||
dest="cmd",
|
||||
help="Use `dvc plots CMD --help` to display command-specific help.",
|
||||
)
|
||||
|
||||
fix_subparsers(plots_subparsers)
|
||||
|
||||
SHOW_HELP = "Generate plots from metrics files."
|
||||
plots_show_parser = plots_subparsers.add_parser(
|
||||
"show",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(SHOW_HELP, "plots/show"),
|
||||
help=SHOW_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
plots_show_parser.add_argument(
|
||||
"targets",
|
||||
nargs="*",
|
||||
help="Files to visualize (supports any file, "
|
||||
"even when not found as `plots` in `dvc.yaml`). "
|
||||
"Shows all plots by default.",
|
||||
).complete = completion.FILE
|
||||
_add_props_arguments(plots_show_parser)
|
||||
_add_output_arguments(plots_show_parser)
|
||||
plots_show_parser.set_defaults(func=CmdPlotsShow)
|
||||
|
||||
PLOTS_DIFF_HELP = (
|
||||
"Show multiple versions of plot metrics "
|
||||
"by plotting them in a single image."
|
||||
)
|
||||
plots_diff_parser = plots_subparsers.add_parser(
|
||||
"diff",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(PLOTS_DIFF_HELP, "plots/diff"),
|
||||
help=PLOTS_DIFF_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
plots_diff_parser.add_argument(
|
||||
"--targets",
|
||||
nargs="*",
|
||||
help="Files to visualize (supports any file, "
|
||||
"even when not found as `plots` in `dvc.yaml`). "
|
||||
"Shows all plots by default.",
|
||||
metavar="<path>",
|
||||
).complete = completion.FILE
|
||||
plots_diff_parser.add_argument(
|
||||
"-e",
|
||||
"--experiment",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help=argparse.SUPPRESS,
|
||||
)
|
||||
plots_diff_parser.add_argument(
|
||||
"revisions", nargs="*", default=None, help="Git commits to plot from",
|
||||
)
|
||||
_add_props_arguments(plots_diff_parser)
|
||||
_add_output_arguments(plots_diff_parser)
|
||||
plots_diff_parser.set_defaults(func=CmdPlotsDiff)
|
||||
|
||||
PLOTS_MODIFY_HELP = "Modify display properties of plot metrics files."
|
||||
plots_modify_parser = plots_subparsers.add_parser(
|
||||
"modify",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(PLOTS_MODIFY_HELP, "plots/modify"),
|
||||
help=PLOTS_MODIFY_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
plots_modify_parser.add_argument(
|
||||
"target", help="Metric file to set properties to",
|
||||
).complete = completion.FILE
|
||||
_add_props_arguments(plots_modify_parser)
|
||||
plots_modify_parser.add_argument(
|
||||
"--unset",
|
||||
nargs="*",
|
||||
metavar="<property>",
|
||||
help="Unset one or more display properties.",
|
||||
)
|
||||
plots_modify_parser.set_defaults(func=CmdPlotsModify)
|
||||
|
||||
|
||||
def _add_props_arguments(parser):
|
||||
parser.add_argument(
|
||||
"-t",
|
||||
"--template",
|
||||
nargs="?",
|
||||
default=None,
|
||||
help=(
|
||||
"Special JSON or HTML schema file to inject with the data. "
|
||||
"See {}".format(
|
||||
format_link("https://man.dvc.org/plots#plot-templates")
|
||||
)
|
||||
),
|
||||
metavar="<path>",
|
||||
).complete = completion.FILE
|
||||
parser.add_argument(
|
||||
"-x", default=None, help="Field name for X axis.", metavar="<field>"
|
||||
)
|
||||
parser.add_argument(
|
||||
"-y", default=None, help="Field name for Y axis.", metavar="<field>"
|
||||
)
|
||||
parser.add_argument(
|
||||
"--no-header",
|
||||
action="store_false",
|
||||
dest="header",
|
||||
default=None, # Use default None to distinguish when it's not used
|
||||
help="Provided CSV or TSV datafile does not have a header.",
|
||||
)
|
||||
parser.add_argument(
|
||||
"--title", default=None, metavar="<text>", help="Plot title."
|
||||
)
|
||||
parser.add_argument(
|
||||
"--x-label", default=None, help="X axis label", metavar="<text>"
|
||||
)
|
||||
parser.add_argument(
|
||||
"--y-label", default=None, help="Y axis label", metavar="<text>"
|
||||
)
|
||||
|
||||
|
||||
def _add_output_arguments(parser):
|
||||
parser.add_argument(
|
||||
"-o",
|
||||
"--out",
|
||||
default=None,
|
||||
help="Destination path to save plots to",
|
||||
metavar="<path>",
|
||||
).complete = completion.DIR
|
||||
parser.add_argument(
|
||||
"--show-vega",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Show output in Vega format.",
|
||||
)
|
||||
+82
-26
@@ -1,9 +1,9 @@
|
||||
import argparse
|
||||
import logging
|
||||
|
||||
from dvc.config import ConfigError
|
||||
from dvc.command.base import append_doc_link, fix_subparsers
|
||||
from dvc.command.config import CmdConfig
|
||||
from dvc.config import ConfigError, merge
|
||||
from dvc.utils import format_link
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
@@ -18,17 +18,13 @@ class CmdRemote(CmdConfig):
|
||||
|
||||
def _check_exists(self, conf):
|
||||
if self.args.name not in conf["remote"]:
|
||||
raise ConfigError(
|
||||
"remote '{}' doesn't exists.".format(self.args.name)
|
||||
)
|
||||
raise ConfigError(f"remote '{self.args.name}' doesn't exist.")
|
||||
|
||||
|
||||
class CmdRemoteAdd(CmdRemote):
|
||||
def run(self):
|
||||
if self.args.default:
|
||||
logger.info(
|
||||
"Setting '{}' as a default remote.".format(self.args.name)
|
||||
)
|
||||
logger.info(f"Setting '{self.args.name}' as a default remote.")
|
||||
|
||||
with self.config.edit(self.args.level) as conf:
|
||||
if self.args.name in conf["remote"] and not self.args.force:
|
||||
@@ -65,8 +61,17 @@ class CmdRemoteRemove(CmdRemote):
|
||||
class CmdRemoteModify(CmdRemote):
|
||||
def run(self):
|
||||
with self.config.edit(self.args.level) as conf:
|
||||
self._check_exists(conf)
|
||||
conf["remote"][self.args.name][self.args.option] = self.args.value
|
||||
merged = self.config.load_config_to_level(self.args.level)
|
||||
merge(merged, conf)
|
||||
self._check_exists(merged)
|
||||
|
||||
if self.args.name not in conf["remote"]:
|
||||
conf["remote"][self.args.name] = {}
|
||||
section = conf["remote"][self.args.name]
|
||||
if self.args.unset:
|
||||
section.pop(self.args.option, None)
|
||||
else:
|
||||
section[self.args.option] = self.args.value
|
||||
return 0
|
||||
|
||||
|
||||
@@ -85,7 +90,18 @@ class CmdRemoteDefault(CmdRemote):
|
||||
if self.args.unset:
|
||||
conf["core"].pop("remote", None)
|
||||
else:
|
||||
conf["core"]["remote"] = self.args.name
|
||||
merged_conf = self.config.load_config_to_level(
|
||||
self.args.level
|
||||
)
|
||||
if (
|
||||
self.args.name in conf["remote"]
|
||||
or self.args.name in merged_conf["remote"]
|
||||
):
|
||||
conf["core"]["remote"] = self.args.name
|
||||
else:
|
||||
raise ConfigError(
|
||||
"default remote must be present in remote list."
|
||||
)
|
||||
return 0
|
||||
|
||||
|
||||
@@ -97,6 +113,35 @@ class CmdRemoteList(CmdRemote):
|
||||
return 0
|
||||
|
||||
|
||||
class CmdRemoteRename(CmdRemote):
|
||||
def _rename_default(self, conf):
|
||||
if conf["core"].get("remote") == self.args.name:
|
||||
conf["core"]["remote"] = self.args.new
|
||||
|
||||
def run(self):
|
||||
all_config = self.config.load_config_to_level(None)
|
||||
if self.args.new in all_config.get("remote", {}):
|
||||
raise ConfigError(
|
||||
"Rename failed. Remote name '{}' already exists.".format(
|
||||
{self.args.new}
|
||||
)
|
||||
)
|
||||
|
||||
with self.config.edit(self.args.level) as conf:
|
||||
self._check_exists(conf)
|
||||
conf["remote"][self.args.new] = conf["remote"][self.args.name]
|
||||
del conf["remote"][self.args.name]
|
||||
self._rename_default(conf)
|
||||
|
||||
for level in reversed(self.config.LEVELS):
|
||||
if level == self.args.level:
|
||||
break
|
||||
with self.config.edit(level) as level_conf:
|
||||
self._rename_default(level_conf)
|
||||
|
||||
return 0
|
||||
|
||||
|
||||
def add_parser(subparsers, parent_parser):
|
||||
from dvc.command.config import parent_config_parser
|
||||
|
||||
@@ -127,7 +172,7 @@ def add_parser(subparsers, parent_parser):
|
||||
remote_add_parser.add_argument("name", help="Name of the remote")
|
||||
remote_add_parser.add_argument(
|
||||
"url",
|
||||
help="URL. See full list of supported urls at {}".format(
|
||||
help="Remote location. See full list of supported URLs at {}".format(
|
||||
format_link("https://man.dvc.org/remote")
|
||||
),
|
||||
)
|
||||
@@ -156,7 +201,7 @@ def add_parser(subparsers, parent_parser):
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
remote_default_parser.add_argument(
|
||||
"name", nargs="?", help="Name of the remote."
|
||||
"name", nargs="?", help="Name of the remote"
|
||||
)
|
||||
remote_default_parser.add_argument(
|
||||
"-u",
|
||||
@@ -167,19 +212,6 @@ def add_parser(subparsers, parent_parser):
|
||||
)
|
||||
remote_default_parser.set_defaults(func=CmdRemoteDefault)
|
||||
|
||||
REMOTE_REMOVE_HELP = "Remove a data remote."
|
||||
remote_remove_parser = remote_subparsers.add_parser(
|
||||
"remove",
|
||||
parents=[parent_config_parser, parent_parser],
|
||||
description=append_doc_link(REMOTE_REMOVE_HELP, "remote/remove"),
|
||||
help=REMOTE_REMOVE_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
remote_remove_parser.add_argument(
|
||||
"name", help="Name of the remote to remove."
|
||||
)
|
||||
remote_remove_parser.set_defaults(func=CmdRemoteRemove)
|
||||
|
||||
REMOTE_MODIFY_HELP = "Modify the configuration of a data remote."
|
||||
remote_modify_parser = remote_subparsers.add_parser(
|
||||
"modify",
|
||||
@@ -188,7 +220,7 @@ def add_parser(subparsers, parent_parser):
|
||||
help=REMOTE_MODIFY_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
remote_modify_parser.add_argument("name", help="Name of the remote.")
|
||||
remote_modify_parser.add_argument("name", help="Name of the remote")
|
||||
remote_modify_parser.add_argument(
|
||||
"option", help="Name of the option to modify."
|
||||
)
|
||||
@@ -213,3 +245,27 @@ def add_parser(subparsers, parent_parser):
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
remote_list_parser.set_defaults(func=CmdRemoteList)
|
||||
|
||||
REMOTE_REMOVE_HELP = "Remove a data remote."
|
||||
remote_remove_parser = remote_subparsers.add_parser(
|
||||
"remove",
|
||||
parents=[parent_config_parser, parent_parser],
|
||||
description=append_doc_link(REMOTE_REMOVE_HELP, "remote/remove"),
|
||||
help=REMOTE_REMOVE_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
remote_remove_parser.add_argument(
|
||||
"name", help="Name of the remote to remove."
|
||||
)
|
||||
remote_remove_parser.set_defaults(func=CmdRemoteRemove)
|
||||
REMOTE_RENAME_HELP = "Rename a DVC remote"
|
||||
remote_rename_parser = remote_subparsers.add_parser(
|
||||
"rename",
|
||||
parents=[parent_config_parser, parent_parser],
|
||||
description=append_doc_link(REMOTE_RENAME_HELP, "remote/rename"),
|
||||
help=REMOTE_RENAME_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
remote_rename_parser.add_argument("name", help="Remote to be renamed")
|
||||
remote_rename_parser.add_argument("new", help="New name of the remote")
|
||||
remote_rename_parser.set_defaults(func=CmdRemoteRename)
|
||||
|
||||
+12
-47
@@ -1,48 +1,29 @@
|
||||
import argparse
|
||||
import logging
|
||||
|
||||
import dvc.prompt as prompt
|
||||
from dvc.command.base import append_doc_link
|
||||
from dvc.command.base import CmdBase
|
||||
from dvc.command import completion
|
||||
from dvc.command.base import CmdBase, append_doc_link
|
||||
from dvc.exceptions import DvcException
|
||||
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
class CmdRemove(CmdBase):
|
||||
def _is_outs_only(self, target):
|
||||
if not self.args.purge:
|
||||
return True
|
||||
|
||||
if self.args.force:
|
||||
return False
|
||||
|
||||
msg = "Are you sure you want to remove '{}' with its outputs?".format(
|
||||
target
|
||||
)
|
||||
|
||||
if prompt.confirm(msg):
|
||||
return False
|
||||
|
||||
raise DvcException(
|
||||
"Cannot purge without a confirmation from the user."
|
||||
" Use `-f` to force."
|
||||
)
|
||||
|
||||
def run(self):
|
||||
for target in self.args.targets:
|
||||
try:
|
||||
outs_only = self._is_outs_only(target)
|
||||
self.repo.remove(target, outs_only=outs_only)
|
||||
self.repo.remove(target, outs=self.args.outs)
|
||||
except DvcException:
|
||||
logger.exception("failed to remove '{}'".format(target))
|
||||
logger.exception(f"failed to remove '{target}'")
|
||||
return 1
|
||||
return 0
|
||||
|
||||
|
||||
def add_parser(subparsers, parent_parser):
|
||||
REMOVE_HELP = "Remove DVC-tracked files or directories."
|
||||
REMOVE_HELP = (
|
||||
"Remove stages or .dvc files, unprotect their outputs, and"
|
||||
" erase .gitignore entries."
|
||||
)
|
||||
remove_parser = subparsers.add_parser(
|
||||
"remove",
|
||||
parents=[parent_parser],
|
||||
@@ -50,29 +31,13 @@ def add_parser(subparsers, parent_parser):
|
||||
help=REMOVE_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
remove_parser_group = remove_parser.add_mutually_exclusive_group()
|
||||
remove_parser_group.add_argument(
|
||||
"-o",
|
||||
remove_parser.add_argument(
|
||||
"--outs",
|
||||
action="store_true",
|
||||
default=True,
|
||||
help="Only remove DVC-file outputs. (Default)",
|
||||
)
|
||||
remove_parser_group.add_argument(
|
||||
"-p",
|
||||
"--purge",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Remove DVC-file and all its outputs.",
|
||||
help="Remove outputs as well.",
|
||||
)
|
||||
remove_parser.add_argument(
|
||||
"-f",
|
||||
"--force",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Force purge.",
|
||||
)
|
||||
remove_parser.add_argument(
|
||||
"targets", nargs="+", help="DVC-files to remove."
|
||||
)
|
||||
"targets", nargs="+", help="DVC-files to remove.",
|
||||
).complete = completion.DVC_FILE
|
||||
remove_parser.set_defaults(func=CmdRemove)
|
||||
|
||||
+76
-35
@@ -2,21 +2,20 @@ import argparse
|
||||
import logging
|
||||
import os
|
||||
|
||||
from dvc.command.base import append_doc_link
|
||||
from dvc.command.base import CmdBase
|
||||
from dvc.command.metrics import show_metrics
|
||||
from dvc.command import completion
|
||||
from dvc.command.base import CmdBase, append_doc_link
|
||||
from dvc.command.metrics import _show_metrics
|
||||
from dvc.command.status import CmdDataStatus
|
||||
from dvc.dvcfile import PIPELINE_FILE
|
||||
from dvc.exceptions import DvcException
|
||||
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
class CmdRepro(CmdBase):
|
||||
def run(self):
|
||||
saved_dir = os.path.realpath(os.curdir)
|
||||
if self.args.cwd:
|
||||
os.chdir(self.args.cwd)
|
||||
os.chdir(self.args.cwd)
|
||||
|
||||
# Dirty hack so the for loop below can at least enter once
|
||||
if self.args.all_pipelines:
|
||||
@@ -27,26 +26,20 @@ class CmdRepro(CmdBase):
|
||||
ret = 0
|
||||
for target in self.args.targets:
|
||||
try:
|
||||
stages = self.repo.reproduce(
|
||||
target,
|
||||
single_item=self.args.single_item,
|
||||
force=self.args.force,
|
||||
dry=self.args.dry,
|
||||
interactive=self.args.interactive,
|
||||
pipeline=self.args.pipeline,
|
||||
all_pipelines=self.args.all_pipelines,
|
||||
ignore_build_cache=self.args.ignore_build_cache,
|
||||
no_commit=self.args.no_commit,
|
||||
downstream=self.args.downstream,
|
||||
recursive=self.args.recursive,
|
||||
)
|
||||
stages = self.repo.reproduce(target, **self._repro_kwargs)
|
||||
|
||||
if len(stages) == 0:
|
||||
logger.info(CmdDataStatus.UP_TO_DATE_MSG)
|
||||
else:
|
||||
logger.info(
|
||||
"Use `dvc push` to send your updates to "
|
||||
"remote storage."
|
||||
)
|
||||
|
||||
if self.args.metrics:
|
||||
metrics = self.repo.metrics.show()
|
||||
show_metrics(metrics)
|
||||
logger.info(_show_metrics(metrics))
|
||||
|
||||
except DvcException:
|
||||
logger.exception("")
|
||||
ret = 1
|
||||
@@ -55,23 +48,31 @@ class CmdRepro(CmdBase):
|
||||
os.chdir(saved_dir)
|
||||
return ret
|
||||
|
||||
@property
|
||||
def _repro_kwargs(self):
|
||||
return {
|
||||
"single_item": self.args.single_item,
|
||||
"force": self.args.force,
|
||||
"dry": self.args.dry,
|
||||
"interactive": self.args.interactive,
|
||||
"pipeline": self.args.pipeline,
|
||||
"all_pipelines": self.args.all_pipelines,
|
||||
"run_cache": not self.args.no_run_cache,
|
||||
"no_commit": self.args.no_commit,
|
||||
"downstream": self.args.downstream,
|
||||
"recursive": self.args.recursive,
|
||||
"force_downstream": self.args.force_downstream,
|
||||
"pull": self.args.pull,
|
||||
"glob": self.args.glob,
|
||||
}
|
||||
|
||||
def add_parser(subparsers, parent_parser):
|
||||
REPRO_HELP = (
|
||||
"Reproduce complete or partial pipelines by executing their stages."
|
||||
)
|
||||
repro_parser = subparsers.add_parser(
|
||||
"repro",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(REPRO_HELP, "repro"),
|
||||
help=REPRO_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
|
||||
def add_arguments(repro_parser):
|
||||
repro_parser.add_argument(
|
||||
"targets",
|
||||
nargs="*",
|
||||
help="DVC-file to reproduce. 'Dvcfile' by default.",
|
||||
)
|
||||
help=f"Stages to reproduce. '{PIPELINE_FILE}' by default.",
|
||||
).complete = completion.DVC_FILE
|
||||
repro_parser.add_argument(
|
||||
"-f",
|
||||
"--force",
|
||||
@@ -91,7 +92,9 @@ def add_parser(subparsers, parent_parser):
|
||||
"-c",
|
||||
"--cwd",
|
||||
default=os.path.curdir,
|
||||
help="Directory within your repo to reproduce from.",
|
||||
help="Directory within your repo to reproduce from. Note: deprecated "
|
||||
"by `dvc --cd <path>`.",
|
||||
metavar="<path>",
|
||||
)
|
||||
repro_parser.add_argument(
|
||||
"-m",
|
||||
@@ -137,7 +140,16 @@ def add_parser(subparsers, parent_parser):
|
||||
help="Reproduce all stages in the specified directory.",
|
||||
)
|
||||
repro_parser.add_argument(
|
||||
"--ignore-build-cache",
|
||||
"--no-run-cache",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help=(
|
||||
"Execute stage commands even if they have already been run with "
|
||||
"the same command/dependencies/outputs/etc before."
|
||||
),
|
||||
)
|
||||
repro_parser.add_argument(
|
||||
"--force-downstream",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Reproduce all descendants of a changed stage even if their "
|
||||
@@ -155,4 +167,33 @@ def add_parser(subparsers, parent_parser):
|
||||
default=False,
|
||||
help="Start from the specified stages when reproducing pipelines.",
|
||||
)
|
||||
repro_parser.add_argument(
|
||||
"--pull",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help=(
|
||||
"Try automatically pulling missing cache for outputs restored "
|
||||
"from the run-cache."
|
||||
),
|
||||
)
|
||||
repro_parser.add_argument(
|
||||
"--glob",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Allows targets containing shell-style wildcards.",
|
||||
)
|
||||
|
||||
|
||||
def add_parser(subparsers, parent_parser):
|
||||
REPRO_HELP = (
|
||||
"Reproduce complete or partial pipelines by executing their stages."
|
||||
)
|
||||
repro_parser = subparsers.add_parser(
|
||||
"repro",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(REPRO_HELP, "repro"),
|
||||
help=REPRO_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
add_arguments(repro_parser)
|
||||
repro_parser.set_defaults(func=CmdRepro)
|
||||
|
||||
+1
-2
@@ -1,8 +1,7 @@
|
||||
import argparse
|
||||
import logging
|
||||
|
||||
from dvc.command.base import append_doc_link
|
||||
from dvc.command.base import CmdBaseNoRepo
|
||||
from dvc.command.base import CmdBaseNoRepo, append_doc_link
|
||||
from dvc.utils import relpath
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
+86
-40
@@ -1,18 +1,15 @@
|
||||
import argparse
|
||||
import logging
|
||||
|
||||
from dvc.command.base import append_doc_link
|
||||
from dvc.command.base import CmdBase
|
||||
from dvc.command import completion
|
||||
from dvc.command.base import CmdBase, append_doc_link
|
||||
from dvc.exceptions import DvcException
|
||||
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
class CmdRun(CmdBase):
|
||||
def run(self):
|
||||
overwrite = self.args.yes or self.args.overwrite_dvcfile
|
||||
|
||||
if not any(
|
||||
[
|
||||
self.args.deps,
|
||||
@@ -20,16 +17,19 @@ class CmdRun(CmdBase):
|
||||
self.args.outs_no_cache,
|
||||
self.args.metrics,
|
||||
self.args.metrics_no_cache,
|
||||
self.args.plots,
|
||||
self.args.plots_no_cache,
|
||||
self.args.outs_persist,
|
||||
self.args.outs_persist_no_cache,
|
||||
self.args.checkpoints,
|
||||
self.args.params,
|
||||
self.args.command,
|
||||
]
|
||||
): # pragma: no cover
|
||||
logger.error(
|
||||
"too few arguments. Specify at least one: `-d`, `-o`, `-O`, "
|
||||
"`-m`, `-M`, `-p`, `--outs-persist`, "
|
||||
"`--outs-persist-no-cache`, `command`."
|
||||
"`-m`, `-M`, `-p`, `--plots`, `--plots-no-cache`, "
|
||||
"`--outs-persist`, `--outs-persist-no-cache`, `command`."
|
||||
)
|
||||
return 1
|
||||
|
||||
@@ -40,22 +40,27 @@ class CmdRun(CmdBase):
|
||||
outs_no_cache=self.args.outs_no_cache,
|
||||
metrics=self.args.metrics,
|
||||
metrics_no_cache=self.args.metrics_no_cache,
|
||||
plots=self.args.plots,
|
||||
plots_no_cache=self.args.plots_no_cache,
|
||||
deps=self.args.deps,
|
||||
params=self.args.params,
|
||||
fname=self.args.file,
|
||||
cwd=self.args.cwd,
|
||||
wdir=self.args.wdir,
|
||||
no_exec=self.args.no_exec,
|
||||
overwrite=overwrite,
|
||||
ignore_build_cache=self.args.ignore_build_cache,
|
||||
remove_outs=self.args.remove_outs,
|
||||
no_exec=(self.args.no_exec or bool(self.args.checkpoints)),
|
||||
force=self.args.force,
|
||||
run_cache=not self.args.no_run_cache,
|
||||
no_commit=self.args.no_commit,
|
||||
outs_persist=self.args.outs_persist,
|
||||
outs_persist_no_cache=self.args.outs_persist_no_cache,
|
||||
checkpoints=self.args.checkpoints,
|
||||
always_changed=self.args.always_changed,
|
||||
name=self.args.name,
|
||||
single_stage=self.args.single_stage,
|
||||
external=self.args.external,
|
||||
desc=self.args.desc,
|
||||
)
|
||||
except DvcException:
|
||||
logger.exception("failed to run command")
|
||||
logger.exception("")
|
||||
return 1
|
||||
|
||||
return 0
|
||||
@@ -79,7 +84,7 @@ class CmdRun(CmdBase):
|
||||
if " " not in argument or '"' in argument:
|
||||
return argument
|
||||
|
||||
return '"{}"'.format(argument)
|
||||
return f'"{argument}"'
|
||||
|
||||
|
||||
def add_parser(subparsers, parent_parser):
|
||||
@@ -97,6 +102,10 @@ def add_parser(subparsers, parent_parser):
|
||||
action="append",
|
||||
default=[],
|
||||
help="Declare dependencies for reproducible cmd.",
|
||||
metavar="<path>",
|
||||
).complete = completion.FILE
|
||||
run_parser.add_argument(
|
||||
"-n", "--name", help="Stage name.",
|
||||
)
|
||||
run_parser.add_argument(
|
||||
"-o",
|
||||
@@ -104,7 +113,8 @@ def add_parser(subparsers, parent_parser):
|
||||
action="append",
|
||||
default=[],
|
||||
help="Declare output file or directory.",
|
||||
)
|
||||
metavar="<filename>",
|
||||
).complete = completion.FILE
|
||||
run_parser.add_argument(
|
||||
"-O",
|
||||
"--outs-no-cache",
|
||||
@@ -112,39 +122,54 @@ def add_parser(subparsers, parent_parser):
|
||||
default=[],
|
||||
help="Declare output file or directory "
|
||||
"(do not put into DVC cache).",
|
||||
)
|
||||
metavar="<filename>",
|
||||
).complete = completion.FILE
|
||||
run_parser.add_argument(
|
||||
"-p",
|
||||
"--params",
|
||||
action="append",
|
||||
default=[],
|
||||
help="Declare parameter to use as additional dependency.",
|
||||
)
|
||||
metavar="[<filename>:]<params_list>",
|
||||
).complete = completion.FILE
|
||||
run_parser.add_argument(
|
||||
"-m",
|
||||
"--metrics",
|
||||
action="append",
|
||||
default=[],
|
||||
help="Declare output metric file or directory.",
|
||||
help="Declare output metrics file.",
|
||||
metavar="<path>",
|
||||
)
|
||||
run_parser.add_argument(
|
||||
"-M",
|
||||
"--metrics-no-cache",
|
||||
action="append",
|
||||
default=[],
|
||||
help="Declare output metric file or directory "
|
||||
"(do not put into DVC cache).",
|
||||
help="Declare output metrics file (do not put into DVC cache).",
|
||||
metavar="<path>",
|
||||
)
|
||||
run_parser.add_argument(
|
||||
"-f", "--file", help="Specify name of the DVC-file it generates."
|
||||
"--plots",
|
||||
action="append",
|
||||
default=[],
|
||||
help="Declare output plot file.",
|
||||
metavar="<path>",
|
||||
)
|
||||
run_parser.add_argument(
|
||||
"-c", "--cwd", help="Deprecated, use -w and -f instead."
|
||||
"--plots-no-cache",
|
||||
action="append",
|
||||
default=[],
|
||||
help="Declare output plot file (do not put into DVC cache).",
|
||||
metavar="<path>",
|
||||
)
|
||||
run_parser.add_argument(
|
||||
"--file", metavar="<filename>", help=argparse.SUPPRESS,
|
||||
)
|
||||
run_parser.add_argument(
|
||||
"-w",
|
||||
"--wdir",
|
||||
help="Directory within your repo to run your command in.",
|
||||
metavar="<path>",
|
||||
)
|
||||
run_parser.add_argument(
|
||||
"--no-exec",
|
||||
@@ -153,30 +178,20 @@ def add_parser(subparsers, parent_parser):
|
||||
help="Only create stage file without actually running it.",
|
||||
)
|
||||
run_parser.add_argument(
|
||||
"-y",
|
||||
"--yes",
|
||||
"-f",
|
||||
"--force",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Deprecated, use --overwrite-dvcfile instead",
|
||||
help="Overwrite existing stage",
|
||||
)
|
||||
run_parser.add_argument(
|
||||
"--overwrite-dvcfile",
|
||||
"--no-run-cache",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Overwrite existing DVC-file without asking for confirmation.",
|
||||
)
|
||||
run_parser.add_argument(
|
||||
"--ignore-build-cache",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Run this stage even if it has been already ran with the same "
|
||||
"command/dependencies/outputs/etc before.",
|
||||
)
|
||||
run_parser.add_argument(
|
||||
"--remove-outs",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Deprecated, this is now the default behavior",
|
||||
help=(
|
||||
"Execute the command even if this stage has already been run "
|
||||
"with the same command/dependencies/outputs/etc before."
|
||||
),
|
||||
)
|
||||
run_parser.add_argument(
|
||||
"--no-commit",
|
||||
@@ -190,6 +205,7 @@ def add_parser(subparsers, parent_parser):
|
||||
default=[],
|
||||
help="Declare output file or directory that will not be "
|
||||
"removed upon repro.",
|
||||
metavar="<filename>",
|
||||
)
|
||||
run_parser.add_argument(
|
||||
"--outs-persist-no-cache",
|
||||
@@ -197,13 +213,43 @@ def add_parser(subparsers, parent_parser):
|
||||
default=[],
|
||||
help="Declare output file or directory that will not be "
|
||||
"removed upon repro (do not put into DVC cache).",
|
||||
metavar="<filename>",
|
||||
)
|
||||
run_parser.add_argument(
|
||||
"-c",
|
||||
"--checkpoints",
|
||||
action="append",
|
||||
default=[],
|
||||
help=argparse.SUPPRESS,
|
||||
metavar="<filename>",
|
||||
).complete = completion.FILE
|
||||
run_parser.add_argument(
|
||||
"--always-changed",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Always consider this DVC-file as changed.",
|
||||
)
|
||||
run_parser.add_argument(
|
||||
"--single-stage",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help=argparse.SUPPRESS,
|
||||
)
|
||||
run_parser.add_argument(
|
||||
"--external",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Allow outputs that are outside of the DVC repository.",
|
||||
)
|
||||
run_parser.add_argument(
|
||||
"--desc",
|
||||
type=str,
|
||||
metavar="<text>",
|
||||
help=(
|
||||
"User description of the stage (optional). "
|
||||
"This doesn't affect any DVC operations."
|
||||
),
|
||||
)
|
||||
run_parser.add_argument(
|
||||
"command", nargs=argparse.REMAINDER, help="Command to execute."
|
||||
)
|
||||
|
||||
+30
-10
@@ -1,7 +1,8 @@
|
||||
import logging
|
||||
|
||||
from dvc.command.data_sync import CmdDataBase
|
||||
|
||||
from dvc.exceptions import DvcException
|
||||
from dvc.utils import format_link
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
@@ -10,6 +11,11 @@ class CmdDataStatus(CmdDataBase):
|
||||
STATUS_LEN = 20
|
||||
STATUS_INDENT = "\t"
|
||||
UP_TO_DATE_MSG = "Data and pipelines are up to date."
|
||||
IN_SYNC_MSG = "Cache and remote '{remote}' are in sync."
|
||||
EMPTY_PROJECT_MSG = (
|
||||
"There are no data or pipelines tracked in this project yet.\n"
|
||||
"See {link} to get started!"
|
||||
).format(link=format_link("https://dvc.org/doc/start"))
|
||||
|
||||
def _normalize(self, s):
|
||||
s += ":"
|
||||
@@ -20,7 +26,7 @@ class CmdDataStatus(CmdDataBase):
|
||||
ind = indent * self.STATUS_INDENT
|
||||
|
||||
if isinstance(status, str):
|
||||
logger.info("{}{}".format(ind, status))
|
||||
logger.info(f"{ind}{status}")
|
||||
return
|
||||
|
||||
if isinstance(status, list):
|
||||
@@ -34,7 +40,7 @@ class CmdDataStatus(CmdDataBase):
|
||||
if isinstance(value, str):
|
||||
logger.info("{}{}{}".format(ind, self._normalize(value), key))
|
||||
elif value:
|
||||
logger.info("{}{}:".format(ind, key))
|
||||
logger.info(f"{ind}{key}:")
|
||||
self._show(value, indent + 1)
|
||||
|
||||
def run(self):
|
||||
@@ -47,17 +53,31 @@ class CmdDataStatus(CmdDataBase):
|
||||
remote=self.args.remote,
|
||||
all_branches=self.args.all_branches,
|
||||
all_tags=self.args.all_tags,
|
||||
all_commits=self.args.all_commits,
|
||||
with_deps=self.args.with_deps,
|
||||
recursive=self.args.recursive,
|
||||
)
|
||||
if st:
|
||||
if self.args.quiet:
|
||||
return 1
|
||||
else:
|
||||
self._show(st, indent)
|
||||
|
||||
if self.args.quiet:
|
||||
return bool(st)
|
||||
|
||||
if self.args.show_json:
|
||||
import json
|
||||
|
||||
logger.info(json.dumps(st))
|
||||
elif st:
|
||||
self._show(st, indent)
|
||||
elif not self.repo.stages:
|
||||
logger.info(self.EMPTY_PROJECT_MSG)
|
||||
elif self.args.cloud or self.args.remote:
|
||||
remote = self.args.remote or self.repo.config["core"].get(
|
||||
"remote"
|
||||
)
|
||||
logger.info(self.IN_SYNC_MSG.format(remote=remote))
|
||||
else:
|
||||
logger.info(self.UP_TO_DATE_MSG)
|
||||
|
||||
except Exception:
|
||||
logger.exception("failed to obtain data status")
|
||||
except DvcException:
|
||||
logger.exception("")
|
||||
return 1
|
||||
return 0
|
||||
|
||||
@@ -1,156 +0,0 @@
|
||||
import logging
|
||||
|
||||
from dvc.command.base import append_doc_link
|
||||
from dvc.command.base import CmdBase
|
||||
from dvc.command.base import fix_subparsers
|
||||
from dvc.exceptions import DvcException
|
||||
from dvc.utils import to_yaml_string
|
||||
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
class CmdTagAdd(CmdBase):
|
||||
def run(self):
|
||||
for target in self.args.targets:
|
||||
try:
|
||||
self.repo.tag.add(
|
||||
self.args.tag,
|
||||
target=target,
|
||||
with_deps=self.args.with_deps,
|
||||
recursive=self.args.recursive,
|
||||
)
|
||||
except DvcException:
|
||||
logger.exception("failed to add tag")
|
||||
return 1
|
||||
return 0
|
||||
|
||||
|
||||
class CmdTagRemove(CmdBase):
|
||||
def run(self):
|
||||
for target in self.args.targets:
|
||||
try:
|
||||
self.repo.tag.remove(
|
||||
self.args.tag,
|
||||
target=target,
|
||||
with_deps=self.args.with_deps,
|
||||
recursive=self.args.recursive,
|
||||
)
|
||||
except DvcException:
|
||||
logger.exception("failed to remove tag")
|
||||
return 1
|
||||
return 0
|
||||
|
||||
|
||||
class CmdTagList(CmdBase):
|
||||
def run(self):
|
||||
for target in self.args.targets:
|
||||
try:
|
||||
tags = self.repo.tag.list(
|
||||
target,
|
||||
with_deps=self.args.with_deps,
|
||||
recursive=self.args.recursive,
|
||||
)
|
||||
if tags:
|
||||
logger.info(to_yaml_string(tags))
|
||||
except DvcException:
|
||||
logger.exception("failed list tags")
|
||||
return 1
|
||||
return 0
|
||||
|
||||
|
||||
def add_parser(subparsers, parent_parser):
|
||||
TAG_HELP = "A set of commands to manage DVC tags."
|
||||
tag_parser = subparsers.add_parser(
|
||||
"tag",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(TAG_HELP, "tag"),
|
||||
add_help=False,
|
||||
)
|
||||
|
||||
tag_subparsers = tag_parser.add_subparsers(
|
||||
dest="cmd",
|
||||
help="Use DVC tag CMD --help to display command-specific help.",
|
||||
)
|
||||
|
||||
fix_subparsers(tag_subparsers)
|
||||
|
||||
TAG_ADD_HELP = "Add DVC tag."
|
||||
tag_add_parser = tag_subparsers.add_parser(
|
||||
"add",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(TAG_ADD_HELP, "tag-add"),
|
||||
help=TAG_ADD_HELP,
|
||||
)
|
||||
tag_add_parser.add_argument("tag", help="Dvc tag.")
|
||||
tag_add_parser.add_argument(
|
||||
"targets", nargs="*", default=[None], help="DVC-files."
|
||||
)
|
||||
tag_add_parser.add_argument(
|
||||
"-d",
|
||||
"--with-deps",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Add tag for all dependencies of the specified DVC-file.",
|
||||
)
|
||||
tag_add_parser.add_argument(
|
||||
"-R",
|
||||
"--recursive",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Add tag for subdirectories of the specified directory.",
|
||||
)
|
||||
tag_add_parser.set_defaults(func=CmdTagAdd)
|
||||
|
||||
TAG_REMOVE_HELP = "Remove DVC tag."
|
||||
tag_remove_parser = tag_subparsers.add_parser(
|
||||
"remove",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(TAG_REMOVE_HELP, "tag-remove"),
|
||||
help=TAG_REMOVE_HELP,
|
||||
)
|
||||
tag_remove_parser.add_argument("tag", help="Dvc tag.")
|
||||
tag_remove_parser.add_argument(
|
||||
"targets", nargs="*", default=[None], help="DVC-files."
|
||||
)
|
||||
tag_remove_parser.add_argument(
|
||||
"-d",
|
||||
"--with-deps",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Remove tag for all dependencies of the specified DVC-file.",
|
||||
)
|
||||
tag_remove_parser.add_argument(
|
||||
"-R",
|
||||
"--recursive",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Remove tag for subdirectories of the specified directory.",
|
||||
)
|
||||
tag_remove_parser.set_defaults(func=CmdTagRemove)
|
||||
|
||||
TAG_LIST_HELP = "List DVC tags."
|
||||
tag_list_parser = tag_subparsers.add_parser(
|
||||
"list",
|
||||
parents=[parent_parser],
|
||||
description=append_doc_link(TAG_LIST_HELP, "tag-list"),
|
||||
help=TAG_LIST_HELP,
|
||||
)
|
||||
tag_list_parser.add_argument(
|
||||
"targets", nargs="*", default=[None], help="DVC-files."
|
||||
)
|
||||
tag_list_parser.add_argument(
|
||||
"-d",
|
||||
"--with-deps",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="List tags for all dependencies of the specified DVC-file.",
|
||||
)
|
||||
tag_list_parser.add_argument(
|
||||
"-R",
|
||||
"--recursive",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="List tags for subdirectories of the specified directory.",
|
||||
)
|
||||
tag_list_parser.set_defaults(func=CmdTagList)
|
||||
@@ -1,11 +1,10 @@
|
||||
import argparse
|
||||
import logging
|
||||
|
||||
from dvc.command.base import append_doc_link
|
||||
from dvc.command.base import CmdBase
|
||||
from dvc.command import completion
|
||||
from dvc.command.base import CmdBase, append_doc_link
|
||||
from dvc.exceptions import DvcException
|
||||
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
@@ -15,7 +14,7 @@ class CmdUnprotect(CmdBase):
|
||||
try:
|
||||
self.repo.unprotect(target)
|
||||
except DvcException:
|
||||
msg = "failed to unprotect '{}'".format(target)
|
||||
msg = f"failed to unprotect '{target}'"
|
||||
logger.exception(msg)
|
||||
return 1
|
||||
return 0
|
||||
@@ -34,6 +33,6 @@ def add_parser(subparsers, parent_parser):
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
unprotect_parser.add_argument(
|
||||
"targets", nargs="+", help="Data files/directories to unprotect."
|
||||
)
|
||||
"targets", nargs="+", help="Data files/directories to unprotect.",
|
||||
).complete = completion.FILE
|
||||
unprotect_parser.set_defaults(func=CmdUnprotect)
|
||||
|
||||
+23
-11
@@ -1,23 +1,25 @@
|
||||
import argparse
|
||||
import logging
|
||||
|
||||
from dvc.command.base import append_doc_link
|
||||
from dvc.command.base import CmdBase
|
||||
from dvc.command import completion
|
||||
from dvc.command.base import CmdBase, append_doc_link
|
||||
from dvc.exceptions import DvcException
|
||||
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
class CmdUpdate(CmdBase):
|
||||
def run(self):
|
||||
ret = 0
|
||||
for target in self.args.targets:
|
||||
try:
|
||||
self.repo.update(target, self.args.rev)
|
||||
except DvcException:
|
||||
logger.exception("failed to update '{}'.".format(target))
|
||||
ret = 1
|
||||
try:
|
||||
self.repo.update(
|
||||
targets=self.args.targets,
|
||||
rev=self.args.rev,
|
||||
recursive=self.args.recursive,
|
||||
)
|
||||
except DvcException:
|
||||
logger.exception("failed update data")
|
||||
ret = 1
|
||||
return ret
|
||||
|
||||
|
||||
@@ -31,9 +33,19 @@ def add_parser(subparsers, parent_parser):
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
)
|
||||
update_parser.add_argument(
|
||||
"targets", nargs="+", help="DVC-files to update."
|
||||
"targets", nargs="+", help="DVC-files to update.",
|
||||
).complete = completion.DVC_FILE
|
||||
update_parser.add_argument(
|
||||
"--rev",
|
||||
nargs="?",
|
||||
help="Git revision (e.g. SHA, branch, tag)",
|
||||
metavar="<commit>",
|
||||
)
|
||||
update_parser.add_argument(
|
||||
"--rev", nargs="?", help="Git revision (e.g. SHA, branch, tag)"
|
||||
"-R",
|
||||
"--recursive",
|
||||
action="store_true",
|
||||
default=False,
|
||||
help="Update all stages in the specified directory.",
|
||||
)
|
||||
update_parser.set_defaults(func=CmdUpdate)
|
||||
|
||||
+4
-130
@@ -1,145 +1,18 @@
|
||||
import argparse
|
||||
import itertools
|
||||
import logging
|
||||
import os
|
||||
import platform
|
||||
import uuid
|
||||
import pathlib
|
||||
|
||||
try:
|
||||
import psutil
|
||||
except ImportError:
|
||||
psutil = None
|
||||
|
||||
from dvc.utils import is_binary, relpath
|
||||
from dvc.command.base import CmdBaseNoRepo, append_doc_link
|
||||
from dvc.version import __version__
|
||||
from dvc.exceptions import DvcException, NotDvcRepoError
|
||||
from dvc.scm.base import SCMError
|
||||
from dvc.system import System
|
||||
from dvc.utils.pkg import PKG
|
||||
from dvc.info import get_dvc_info
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
class CmdVersion(CmdBaseNoRepo):
|
||||
def run(self):
|
||||
from dvc.repo import Repo
|
||||
|
||||
info = [
|
||||
"DVC version: {}".format(__version__),
|
||||
"Python version: {}".format(platform.python_version()),
|
||||
"Platform: {}".format(platform.platform()),
|
||||
"Binary: {}".format(is_binary()),
|
||||
"Package: {}".format(PKG),
|
||||
"Supported remotes: {}".format(self.get_supported_remotes()),
|
||||
]
|
||||
|
||||
try:
|
||||
repo = Repo()
|
||||
root_directory = repo.root_dir
|
||||
|
||||
# cache_dir might not exist yet (e.g. after `dvc init`), and we
|
||||
# can't auto-create it, as it might cause issues if the user
|
||||
# later decides to enable shared cache mode with
|
||||
# `dvc config cache.shared group`.
|
||||
if os.path.exists(repo.cache.local.cache_dir):
|
||||
info.append(
|
||||
"Cache: {}".format(self.get_linktype_support_info(repo))
|
||||
)
|
||||
if psutil:
|
||||
fs_type = self.get_fs_type(repo.cache.local.cache_dir)
|
||||
info.append(
|
||||
"Filesystem type (cache directory): {}".format(fs_type)
|
||||
)
|
||||
else:
|
||||
logger.warning(
|
||||
"Unable to detect supported link types, as cache "
|
||||
"directory '{}' doesn't exist. It is usually auto-created "
|
||||
"by commands such as `dvc add/fetch/pull/run/import`, "
|
||||
"but you could create it manually to enable this "
|
||||
"check.".format(relpath(repo.cache.local.cache_dir))
|
||||
)
|
||||
|
||||
except NotDvcRepoError:
|
||||
root_directory = os.getcwd()
|
||||
except SCMError:
|
||||
root_directory = os.getcwd()
|
||||
info.append("Repo: dvc, git (broken)")
|
||||
else:
|
||||
info.append("Repo: {}".format(_get_dvc_repo_info(repo)))
|
||||
|
||||
if psutil:
|
||||
fs_root = self.get_fs_type(os.path.abspath(root_directory))
|
||||
info.append("Filesystem type (workspace): {}".format(fs_root))
|
||||
|
||||
logger.info("\n".join(info))
|
||||
dvc_info = get_dvc_info()
|
||||
logger.info(dvc_info)
|
||||
return 0
|
||||
|
||||
@staticmethod
|
||||
def get_fs_type(path):
|
||||
partition = {
|
||||
pathlib.Path(part.mountpoint): (part.fstype, part.device)
|
||||
for part in psutil.disk_partitions(all=True)
|
||||
}
|
||||
|
||||
path = pathlib.Path(path)
|
||||
|
||||
for parent in itertools.chain([path], path.parents):
|
||||
if parent in partition:
|
||||
return partition[parent]
|
||||
return ("unknown", "none")
|
||||
|
||||
@staticmethod
|
||||
def get_linktype_support_info(repo):
|
||||
links = {
|
||||
"reflink": (System.reflink, None),
|
||||
"hardlink": (System.hardlink, System.is_hardlink),
|
||||
"symlink": (System.symlink, System.is_symlink),
|
||||
}
|
||||
|
||||
fname = "." + str(uuid.uuid4())
|
||||
src = os.path.join(repo.cache.local.cache_dir, fname)
|
||||
open(src, "w").close()
|
||||
dst = os.path.join(repo.root_dir, fname)
|
||||
|
||||
cache = []
|
||||
|
||||
for name, (link, is_link) in links.items():
|
||||
try:
|
||||
link(src, dst)
|
||||
status = "supported"
|
||||
if is_link and not is_link(dst):
|
||||
status = "broken"
|
||||
os.unlink(dst)
|
||||
except DvcException:
|
||||
status = "not supported"
|
||||
cache.append("{name} - {status}".format(name=name, status=status))
|
||||
os.remove(src)
|
||||
|
||||
return ", ".join(cache)
|
||||
|
||||
@staticmethod
|
||||
def get_supported_remotes():
|
||||
from dvc.remote import REMOTES
|
||||
|
||||
supported_remotes = []
|
||||
for remote in REMOTES:
|
||||
if not remote.get_missing_deps():
|
||||
supported_remotes.append(remote.scheme)
|
||||
|
||||
return ", ".join(supported_remotes)
|
||||
|
||||
|
||||
def _get_dvc_repo_info(repo):
|
||||
if repo.config.get("core", {}).get("no_scm", False):
|
||||
return "dvc (no_scm)"
|
||||
|
||||
if repo.root_dir != repo.scm.root_dir:
|
||||
return "dvc (subdir), git"
|
||||
|
||||
return "dvc, git"
|
||||
|
||||
|
||||
def add_parser(subparsers, parent_parser):
|
||||
VERSION_HELP = (
|
||||
@@ -151,5 +24,6 @@ def add_parser(subparsers, parent_parser):
|
||||
description=append_doc_link(VERSION_HELP, "version"),
|
||||
help=VERSION_HELP,
|
||||
formatter_class=argparse.RawDescriptionHelpFormatter,
|
||||
aliases=["doctor"],
|
||||
)
|
||||
version_parser.set_defaults(func=CmdVersion)
|
||||
|
||||
@@ -1,42 +0,0 @@
|
||||
"""Python version compatibility code"""
|
||||
|
||||
# Backport os.fspath() from Python 3.6
|
||||
try:
|
||||
from os import fspath # noqa: F821
|
||||
|
||||
fspath_py35 = lambda s: s # noqa: E731
|
||||
except ImportError:
|
||||
|
||||
def fspath(path):
|
||||
"""Return the path representation of a path-like object.
|
||||
|
||||
If str or bytes is passed in, it is returned unchanged. Otherwise the
|
||||
os.PathLike interface is used to get the path representation. If the
|
||||
path representation is not str or bytes, TypeError is raised. If the
|
||||
provided path is not str, bytes, or os.PathLike, TypeError is raised.
|
||||
"""
|
||||
if isinstance(path, (str, bytes)):
|
||||
return path
|
||||
|
||||
# Work from the object's type to match method resolution of other magic
|
||||
# methods.
|
||||
path_type = type(path)
|
||||
try:
|
||||
path_repr = path_type.__fspath__(path)
|
||||
except AttributeError:
|
||||
if hasattr(path_type, "__fspath__"):
|
||||
raise
|
||||
else:
|
||||
raise TypeError(
|
||||
"expected str, bytes or os.PathLike object, "
|
||||
"not " + path_type.__name__
|
||||
)
|
||||
if isinstance(path_repr, (str, bytes)):
|
||||
return path_repr
|
||||
else:
|
||||
raise TypeError(
|
||||
"expected {}.__fspath__() to return str or bytes, "
|
||||
"not {}".format(path_type.__name__, type(path_repr).__name__)
|
||||
)
|
||||
|
||||
fspath_py35 = fspath
|
||||
+140
-42
@@ -1,16 +1,27 @@
|
||||
"""DVC config objects."""
|
||||
from contextlib import contextmanager
|
||||
import logging
|
||||
import os
|
||||
import re
|
||||
from contextlib import contextmanager
|
||||
from functools import partial
|
||||
from urllib.parse import urlparse
|
||||
|
||||
from funcy import cached_property, re_find, walk_values, compact
|
||||
import configobj
|
||||
from voluptuous import Schema, Optional, Invalid, ALLOW_EXTRA
|
||||
from voluptuous import All, Any, Lower, Range, Coerce
|
||||
from funcy import cached_property, compact, re_find, walk_values
|
||||
from voluptuous import (
|
||||
ALLOW_EXTRA,
|
||||
All,
|
||||
Any,
|
||||
Coerce,
|
||||
Invalid,
|
||||
Lower,
|
||||
Optional,
|
||||
Range,
|
||||
Schema,
|
||||
)
|
||||
|
||||
from dvc.exceptions import DvcException, NotDvcRepoError
|
||||
from dvc.path_info import PathInfo
|
||||
from dvc.utils import relpath
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
@@ -20,7 +31,7 @@ class ConfigError(DvcException):
|
||||
"""DVC config exception."""
|
||||
|
||||
def __init__(self, msg):
|
||||
super().__init__("config file error: {}".format(msg))
|
||||
super().__init__(f"config file error: {msg}")
|
||||
|
||||
|
||||
class NoRemoteError(ConfigError):
|
||||
@@ -78,7 +89,7 @@ def ByUrl(mapping):
|
||||
if os.name == "nt" and len(parsed.scheme) == 1 and parsed.netloc == "":
|
||||
return schemas[""](data)
|
||||
if parsed.scheme not in schemas:
|
||||
raise Invalid("Unsupported URL type {}://".format(parsed.scheme))
|
||||
raise Invalid(f"Unsupported URL type {parsed.scheme}://")
|
||||
|
||||
return schemas[parsed.scheme](data)
|
||||
|
||||
@@ -92,6 +103,7 @@ class RelPath(str):
|
||||
REMOTE_COMMON = {
|
||||
"url": str,
|
||||
"checksum_jobs": All(Coerce(int), Range(1)),
|
||||
"jobs": All(Coerce(int), Range(1)),
|
||||
Optional("no_traverse"): Bool, # obsoleted
|
||||
"verify": Bool,
|
||||
}
|
||||
@@ -107,7 +119,19 @@ HTTP_COMMON = {
|
||||
"user": str,
|
||||
"password": str,
|
||||
"ask_password": Bool,
|
||||
"ssl_verify": Bool,
|
||||
"method": str,
|
||||
}
|
||||
WEBDAV_COMMON = {
|
||||
"user": str,
|
||||
"password": str,
|
||||
"ask_password": Bool,
|
||||
"token": str,
|
||||
"cert_path": str,
|
||||
"key_path": str,
|
||||
"timeout": Coerce(int),
|
||||
}
|
||||
|
||||
SCHEMA = {
|
||||
"core": {
|
||||
"remote": Lower,
|
||||
@@ -116,12 +140,16 @@ SCHEMA = {
|
||||
Optional("analytics", default=True): Bool,
|
||||
Optional("hardlink_lock", default=False): Bool,
|
||||
Optional("no_scm", default=False): Bool,
|
||||
Optional("autostage", default=False): Bool,
|
||||
Optional("experiments", default=False): Bool,
|
||||
Optional("check_update", default=True): Bool,
|
||||
},
|
||||
"cache": {
|
||||
"local": str,
|
||||
"s3": str,
|
||||
"gs": str,
|
||||
"hdfs": str,
|
||||
"webhdfs": str,
|
||||
"ssh": str,
|
||||
"azure": str,
|
||||
# This is for default local cache
|
||||
@@ -137,9 +165,12 @@ SCHEMA = {
|
||||
"profile": str,
|
||||
"credentialpath": str,
|
||||
"endpointurl": str,
|
||||
Optional("listobjects", default=False): Bool,
|
||||
"access_key_id": str,
|
||||
"secret_access_key": str,
|
||||
Optional("listobjects", default=False): Bool, # obsoleted
|
||||
Optional("use_ssl", default=True): Bool,
|
||||
"sse": str,
|
||||
"sse_kms_key_id": str,
|
||||
"acl": str,
|
||||
"grant_read": str,
|
||||
"grant_read_acp": str,
|
||||
@@ -161,9 +192,17 @@ SCHEMA = {
|
||||
"keyfile": str,
|
||||
"timeout": Coerce(int),
|
||||
"gss_auth": Bool,
|
||||
"allow_agent": Bool,
|
||||
**REMOTE_COMMON,
|
||||
},
|
||||
"hdfs": {"user": str, **REMOTE_COMMON},
|
||||
"webhdfs": {
|
||||
"hdfscli_config": str,
|
||||
"webhdfs_token": str,
|
||||
"user": str,
|
||||
"webhdfs_alias": str,
|
||||
**REMOTE_COMMON,
|
||||
},
|
||||
"azure": {"connection_string": str, **REMOTE_COMMON},
|
||||
"oss": {
|
||||
"oss_key_id": str,
|
||||
@@ -184,6 +223,8 @@ SCHEMA = {
|
||||
},
|
||||
"http": {**HTTP_COMMON, **REMOTE_COMMON},
|
||||
"https": {**HTTP_COMMON, **REMOTE_COMMON},
|
||||
"webdav": {**WEBDAV_COMMON, **REMOTE_COMMON},
|
||||
"webdavs": {**WEBDAV_COMMON, **REMOTE_COMMON},
|
||||
"remote": {str: object}, # Any of the above options are valid
|
||||
}
|
||||
)
|
||||
@@ -192,6 +233,8 @@ SCHEMA = {
|
||||
"row_limit": All(Coerce(int), Range(1)),
|
||||
"row_cleanup_quota": All(Coerce(int), Range(0, 100)),
|
||||
},
|
||||
# section for experimental features
|
||||
"feature": {Optional("parametrization", default=False): Bool},
|
||||
}
|
||||
COMPILED_SCHEMA = Schema(SCHEMA)
|
||||
|
||||
@@ -219,7 +262,11 @@ class Config(dict):
|
||||
CONFIG = "config"
|
||||
CONFIG_LOCAL = "config.local"
|
||||
|
||||
def __init__(self, dvc_dir=None, validate=True):
|
||||
def __init__(
|
||||
self, dvc_dir=None, validate=True, tree=None,
|
||||
): # pylint: disable=super-init-not-called
|
||||
from dvc.tree.local import LocalTree
|
||||
|
||||
self.dvc_dir = dvc_dir
|
||||
|
||||
if not dvc_dir:
|
||||
@@ -232,11 +279,14 @@ class Config(dict):
|
||||
else:
|
||||
self.dvc_dir = os.path.abspath(os.path.realpath(dvc_dir))
|
||||
|
||||
self.wtree = LocalTree(None, {"url": self.dvc_dir})
|
||||
self.tree = tree or self.wtree
|
||||
|
||||
self.load(validate=validate)
|
||||
|
||||
@classmethod
|
||||
def get_dir(cls, level):
|
||||
from appdirs import user_config_dir, site_config_dir
|
||||
from appdirs import site_config_dir, user_config_dir
|
||||
|
||||
assert level in ("global", "system")
|
||||
|
||||
@@ -278,10 +328,7 @@ class Config(dict):
|
||||
Raises:
|
||||
ConfigError: thrown if config has an invalid format.
|
||||
"""
|
||||
conf = {}
|
||||
for level in self.LEVELS:
|
||||
if level in self.files:
|
||||
_merge(conf, self.load_one(level))
|
||||
conf = self.load_config_to_level()
|
||||
|
||||
if validate:
|
||||
conf = self.validate(conf)
|
||||
@@ -293,11 +340,40 @@ class Config(dict):
|
||||
if not self["cache"].get("dir") and self.dvc_dir:
|
||||
self["cache"]["dir"] = os.path.join(self.dvc_dir, "cache")
|
||||
|
||||
def _get_tree(self, level):
|
||||
# NOTE: this might be a GitTree, which doesn't see things outside of
|
||||
# the repo.
|
||||
return self.tree if level == "repo" else self.wtree
|
||||
|
||||
def _load_config(self, level):
|
||||
filename = self.files[level]
|
||||
tree = self._get_tree(level)
|
||||
|
||||
if tree.exists(filename, use_dvcignore=False):
|
||||
with tree.open(filename) as fobj:
|
||||
conf_obj = configobj.ConfigObj(fobj)
|
||||
else:
|
||||
conf_obj = configobj.ConfigObj()
|
||||
return _parse_remotes(_lower_keys(conf_obj.dict()))
|
||||
|
||||
def _save_config(self, level, conf_dict):
|
||||
filename = self.files[level]
|
||||
tree = self._get_tree(level)
|
||||
|
||||
logger.debug(f"Writing '{filename}'.")
|
||||
|
||||
tree.makedirs(os.path.dirname(filename))
|
||||
|
||||
config = configobj.ConfigObj(_pack_remotes(conf_dict))
|
||||
with tree.open(filename, "wb") as fobj:
|
||||
config.write(fobj)
|
||||
config.filename = filename
|
||||
|
||||
def load_one(self, level):
|
||||
conf = _load_config(self.files[level])
|
||||
conf = self._load_config(level)
|
||||
conf = self._load_paths(conf, self.files[level])
|
||||
|
||||
# Autovivify sections
|
||||
# Auto-verify sections
|
||||
for key in COMPILED_SCHEMA.schema:
|
||||
conf.setdefault(key, {})
|
||||
|
||||
@@ -310,29 +386,60 @@ class Config(dict):
|
||||
def resolve(path):
|
||||
if os.path.isabs(path) or re.match(r"\w+://", path):
|
||||
return path
|
||||
|
||||
# on windows convert slashes to backslashes
|
||||
# to have path compatible with abs_conf_dir
|
||||
if os.path.sep == "\\" and "/" in path:
|
||||
path = path.replace("/", "\\")
|
||||
|
||||
return RelPath(os.path.join(abs_conf_dir, path))
|
||||
|
||||
return Config._map_dirs(conf, resolve)
|
||||
|
||||
@staticmethod
|
||||
def _to_relpath(conf_dir, path):
|
||||
if re.match(r"\w+://", path):
|
||||
return path
|
||||
|
||||
if isinstance(path, RelPath) or not os.path.isabs(path):
|
||||
path = relpath(path, conf_dir)
|
||||
|
||||
return PathInfo(path).as_posix()
|
||||
|
||||
@staticmethod
|
||||
def _save_paths(conf, filename):
|
||||
conf_dir = os.path.dirname(filename)
|
||||
|
||||
def rel(path):
|
||||
if re.match(r"\w+://", path):
|
||||
return path
|
||||
|
||||
if isinstance(path, RelPath) or not os.path.isabs(path):
|
||||
return relpath(path, conf_dir)
|
||||
return path
|
||||
rel = partial(Config._to_relpath, conf_dir)
|
||||
|
||||
return Config._map_dirs(conf, rel)
|
||||
|
||||
@staticmethod
|
||||
def _map_dirs(conf, func):
|
||||
dirs_schema = {"cache": {"dir": func}, "remote": {str: {"url": func}}}
|
||||
dirs_schema = {
|
||||
"cache": {"dir": func},
|
||||
"remote": {
|
||||
str: {
|
||||
"url": func,
|
||||
"gdrive_user_credentials_file": func,
|
||||
"gdrive_service_account_p12_file_path": func,
|
||||
"credentialpath": func,
|
||||
"keyfile": func,
|
||||
"cert_path": func,
|
||||
"key_path": func,
|
||||
}
|
||||
},
|
||||
}
|
||||
return Schema(dirs_schema, extra=ALLOW_EXTRA)(conf)
|
||||
|
||||
def load_config_to_level(self, level=None):
|
||||
merged_conf = {}
|
||||
for merge_level in self.LEVELS:
|
||||
if merge_level == level:
|
||||
break
|
||||
if merge_level in self.files:
|
||||
merge(merged_conf, self.load_one(merge_level))
|
||||
return merged_conf
|
||||
|
||||
@contextmanager
|
||||
def edit(self, level="repo"):
|
||||
if level in {"repo", "local"} and self.dvc_dir is None:
|
||||
@@ -342,7 +449,12 @@ class Config(dict):
|
||||
yield conf
|
||||
|
||||
conf = self._save_paths(conf, self.files[level])
|
||||
_save_config(self.files[level], conf)
|
||||
|
||||
merged_conf = self.load_config_to_level(level)
|
||||
merge(merged_conf, conf)
|
||||
self.validate(merged_conf)
|
||||
|
||||
self._save_config(level, conf)
|
||||
self.load()
|
||||
|
||||
@staticmethod
|
||||
@@ -353,20 +465,6 @@ class Config(dict):
|
||||
raise ConfigError(str(exc)) from None
|
||||
|
||||
|
||||
def _load_config(filename):
|
||||
conf_obj = configobj.ConfigObj(filename)
|
||||
return _parse_remotes(_lower_keys(conf_obj.dict()))
|
||||
|
||||
|
||||
def _save_config(filename, conf_dict):
|
||||
logger.debug("Writing '{}'.".format(filename))
|
||||
os.makedirs(os.path.dirname(filename), exist_ok=True)
|
||||
|
||||
config = configobj.ConfigObj(_pack_remotes(conf_dict))
|
||||
config.filename = filename
|
||||
config.write()
|
||||
|
||||
|
||||
def _parse_remotes(conf):
|
||||
result = {"remote": {}}
|
||||
|
||||
@@ -386,17 +484,17 @@ def _pack_remotes(conf):
|
||||
|
||||
# Transform remote.name -> 'remote "name"'
|
||||
for name, val in conf["remote"].items():
|
||||
result['remote "{}"'.format(name)] = val
|
||||
result[f'remote "{name}"'] = val
|
||||
result.pop("remote", None)
|
||||
|
||||
return result
|
||||
|
||||
|
||||
def _merge(into, update):
|
||||
def merge(into, update):
|
||||
"""Merges second dict into first recursively"""
|
||||
for key, val in update.items():
|
||||
if isinstance(into.get(key), dict) and isinstance(val, dict):
|
||||
_merge(into[key], val)
|
||||
merge(into[key], val)
|
||||
else:
|
||||
into[key] = val
|
||||
|
||||
|
||||
+25
-19
@@ -3,13 +3,12 @@
|
||||
import inspect
|
||||
import logging
|
||||
import os
|
||||
import platform
|
||||
import sys
|
||||
from subprocess import Popen
|
||||
|
||||
from dvc.env import DVC_DAEMON
|
||||
from dvc.utils import fix_env
|
||||
from dvc.utils import is_binary
|
||||
|
||||
from dvc.utils import fix_env, is_binary
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
@@ -17,25 +16,30 @@ CREATE_NEW_PROCESS_GROUP = 0x00000200
|
||||
DETACHED_PROCESS = 0x00000008
|
||||
|
||||
|
||||
def _popen(cmd, **kwargs):
|
||||
prefix = [sys.executable]
|
||||
if not is_binary():
|
||||
prefix += [sys.argv[0]]
|
||||
|
||||
return Popen(prefix + cmd, close_fds=True, shell=False, **kwargs)
|
||||
|
||||
|
||||
def _spawn_windows(cmd, env):
|
||||
from subprocess import STARTUPINFO, STARTF_USESHOWWINDOW
|
||||
from subprocess import STARTF_USESHOWWINDOW, STARTUPINFO
|
||||
|
||||
creationflags = CREATE_NEW_PROCESS_GROUP | DETACHED_PROCESS
|
||||
|
||||
startupinfo = STARTUPINFO()
|
||||
startupinfo.dwFlags |= STARTF_USESHOWWINDOW
|
||||
|
||||
Popen(
|
||||
cmd,
|
||||
env=env,
|
||||
close_fds=True,
|
||||
shell=False,
|
||||
creationflags=creationflags,
|
||||
startupinfo=startupinfo,
|
||||
_popen(
|
||||
cmd, env=env, creationflags=creationflags, startupinfo=startupinfo,
|
||||
).communicate()
|
||||
|
||||
|
||||
def _spawn_posix(cmd, env):
|
||||
from dvc.main import main
|
||||
|
||||
# NOTE: using os._exit instead of sys.exit, because dvc built
|
||||
# with PyInstaller has trouble with SystemExit exception and throws
|
||||
# errors such as "[26338] Failed to execute script __main__"
|
||||
@@ -48,7 +52,6 @@ def _spawn_posix(cmd, env):
|
||||
os._exit(1) # pylint: disable=protected-access
|
||||
|
||||
os.setsid()
|
||||
os.umask(0)
|
||||
|
||||
try:
|
||||
pid = os.fork()
|
||||
@@ -62,13 +65,19 @@ def _spawn_posix(cmd, env):
|
||||
sys.stdout.close()
|
||||
sys.stderr.close()
|
||||
|
||||
Popen(cmd, env=env, close_fds=True, shell=False).communicate()
|
||||
if platform.system() == "Darwin":
|
||||
# workaround for MacOS bug
|
||||
# https://github.com/iterative/dvc/issues/4294
|
||||
_popen(cmd, env=env).communicate()
|
||||
else:
|
||||
os.environ.update(env)
|
||||
main(cmd)
|
||||
|
||||
os._exit(0) # pylint: disable=protected-access
|
||||
|
||||
|
||||
def _spawn(cmd, env):
|
||||
logger.debug("Trying to spawn '{}'".format(cmd))
|
||||
logger.debug(f"Trying to spawn '{cmd}'")
|
||||
|
||||
if os.name == "nt":
|
||||
_spawn_windows(cmd, env)
|
||||
@@ -77,7 +86,7 @@ def _spawn(cmd, env):
|
||||
else:
|
||||
raise NotImplementedError
|
||||
|
||||
logger.debug("Spawned '{}'".format(cmd))
|
||||
logger.debug(f"Spawned '{cmd}'")
|
||||
|
||||
|
||||
def daemon(args):
|
||||
@@ -90,10 +99,7 @@ def daemon(args):
|
||||
logger.debug("skipping launching a new daemon.")
|
||||
return
|
||||
|
||||
cmd = [sys.executable]
|
||||
if not is_binary():
|
||||
cmd += [sys.argv[0]]
|
||||
cmd += ["daemon", "-q"] + args
|
||||
cmd = ["daemon", "-q"] + args
|
||||
|
||||
env = fix_env()
|
||||
file_path = os.path.abspath(inspect.stack()[0][1])
|
||||
|
||||
+13
-17
@@ -6,12 +6,9 @@ import os
|
||||
import pydoc
|
||||
import sys
|
||||
|
||||
from grandalf.graphs import Edge
|
||||
from grandalf.graphs import Graph
|
||||
from grandalf.graphs import Vertex
|
||||
from grandalf.graphs import Edge, Graph, Vertex
|
||||
from grandalf.layouts import SugiyamaLayout
|
||||
from grandalf.routing import EdgeViewer
|
||||
from grandalf.routing import route_with_lines
|
||||
from grandalf.routing import EdgeViewer, route_with_lines
|
||||
|
||||
from dvc.env import DVC_PAGER
|
||||
from dvc.utils import format_link
|
||||
@@ -40,7 +37,7 @@ def find_pager():
|
||||
if env_pager:
|
||||
return make_pager(env_pager)
|
||||
|
||||
if os.system("({}) 2>{}".format(DEFAULT_PAGER, os.devnull)) == 0:
|
||||
if os.system(f"({DEFAULT_PAGER}) 2>{os.devnull}") == 0:
|
||||
return make_pager(DEFAULT_PAGER_FORMATTED)
|
||||
|
||||
logger.warning(
|
||||
@@ -52,7 +49,7 @@ def find_pager():
|
||||
return pydoc.plainpager
|
||||
|
||||
|
||||
class VertexViewer(object):
|
||||
class VertexViewer:
|
||||
"""Class to define vertex box boundaries that will be accounted for during
|
||||
graph building by grandalf.
|
||||
|
||||
@@ -78,7 +75,7 @@ class VertexViewer(object):
|
||||
return self._w
|
||||
|
||||
|
||||
class AsciiCanvas(object):
|
||||
class AsciiCanvas:
|
||||
"""Class for drawing in ASCII.
|
||||
|
||||
Args:
|
||||
@@ -95,14 +92,13 @@ class AsciiCanvas(object):
|
||||
self.cols = cols
|
||||
self.lines = lines
|
||||
|
||||
self.canvas = [[" "] * cols for l in range(lines)]
|
||||
self.canvas = [[" "] * cols for line in range(lines)]
|
||||
|
||||
def draw(self):
|
||||
"""Draws ASCII canvas on the screen."""
|
||||
pager = find_pager()
|
||||
lines = map("".join, self.canvas)
|
||||
joined_lines = os.linesep.join(lines)
|
||||
pager(joined_lines)
|
||||
return joined_lines
|
||||
|
||||
def point(self, x, y, char):
|
||||
"""Create a point on ASCII canvas.
|
||||
@@ -148,21 +144,21 @@ class AsciiCanvas(object):
|
||||
if dx == 0:
|
||||
y = y0
|
||||
else:
|
||||
y = y0 + int(round((x - x0) * dy / float((dx))))
|
||||
y = y0 + int(round((x - x0) * dy / float(dx)))
|
||||
self.point(x, y, char)
|
||||
elif y0 < y1:
|
||||
for y in range(y0, y1 + 1):
|
||||
if dy == 0:
|
||||
x = x0
|
||||
else:
|
||||
x = x0 + int(round((y - y0) * dx / float((dy))))
|
||||
x = x0 + int(round((y - y0) * dx / float(dy)))
|
||||
self.point(x, y, char)
|
||||
else:
|
||||
for y in range(y1, y0 + 1):
|
||||
if dy == 0:
|
||||
x = x0
|
||||
else:
|
||||
x = x1 + int(round((y - y1) * dx / float((dy))))
|
||||
x = x1 + int(round((y - y1) * dx / float(dy)))
|
||||
self.point(x, y, char)
|
||||
|
||||
def text(self, x, y, text):
|
||||
@@ -216,7 +212,7 @@ def _build_sugiyama_layout(vertexes, edges):
|
||||
# Y
|
||||
#
|
||||
|
||||
vertexes = {v: Vertex(" {} ".format(v)) for v in vertexes}
|
||||
vertexes = {v: Vertex(f" {v} ") for v in vertexes}
|
||||
# NOTE: reverting edges to correctly orientate the graph
|
||||
edges = [Edge(vertexes[e], vertexes[s]) for s, e in edges]
|
||||
vertexes = vertexes.values()
|
||||
@@ -226,7 +222,7 @@ def _build_sugiyama_layout(vertexes, edges):
|
||||
vertex.view = VertexViewer(vertex.data)
|
||||
|
||||
# NOTE: determine min box length to create the best layout
|
||||
minw = min([v.view.w for v in vertexes])
|
||||
minw = min(v.view.w for v in vertexes)
|
||||
|
||||
for edge in edges:
|
||||
edge.view = EdgeViewer()
|
||||
@@ -319,4 +315,4 @@ def draw(vertexes, edges):
|
||||
int(round(x - minx)) + 1, int(round(y - miny)) + 1, vertex.data
|
||||
)
|
||||
|
||||
canvas.draw()
|
||||
return canvas.draw()
|
||||
|
||||
+48
-36
@@ -3,13 +3,12 @@
|
||||
import logging
|
||||
|
||||
from dvc.config import NoRemoteError
|
||||
from dvc.remote import Remote
|
||||
|
||||
from dvc.remote import get_remote
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
class DataCloud(object):
|
||||
class DataCloud:
|
||||
"""Class that manages dvc remotes.
|
||||
|
||||
Args:
|
||||
@@ -23,12 +22,12 @@ class DataCloud(object):
|
||||
def __init__(self, repo):
|
||||
self.repo = repo
|
||||
|
||||
def get_remote(self, remote=None, command="<command>"):
|
||||
if not remote:
|
||||
remote = self.repo.config["core"].get("remote")
|
||||
def get_remote(self, name=None, command="<command>"):
|
||||
if not name:
|
||||
name = self.repo.config["core"].get("remote")
|
||||
|
||||
if remote:
|
||||
return self._init_remote(remote)
|
||||
if name:
|
||||
return self._init_remote(name)
|
||||
|
||||
if bool(self.repo.config["remote"]):
|
||||
error_msg = (
|
||||
@@ -45,70 +44,83 @@ class DataCloud(object):
|
||||
|
||||
raise NoRemoteError(error_msg)
|
||||
|
||||
def _init_remote(self, remote):
|
||||
return Remote(self.repo, name=remote)
|
||||
def _init_remote(self, name):
|
||||
return get_remote(self.repo, name=name)
|
||||
|
||||
def push(self, cache, jobs=None, remote=None, show_checksums=False):
|
||||
def push(
|
||||
self, cache, jobs=None, remote=None, show_checksums=False,
|
||||
):
|
||||
"""Push data items in a cloud-agnostic way.
|
||||
|
||||
Args:
|
||||
cache (NamedCache): named checksums to push to the cloud.
|
||||
jobs (int): number of jobs that can be running simultaneously.
|
||||
remote (dvc.remote.base.RemoteBASE): optional remote to push to.
|
||||
remote (dvc.remote.base.BaseRemote): optional remote to push to.
|
||||
By default remote from core.remote config option is used.
|
||||
show_checksums (bool): show checksums instead of file names in
|
||||
information messages.
|
||||
"""
|
||||
return self.repo.cache.local.push(
|
||||
remote = self.get_remote(remote, "push")
|
||||
|
||||
return remote.push(
|
||||
self.repo.cache.local,
|
||||
cache,
|
||||
jobs=jobs,
|
||||
remote=self.get_remote(remote, "push"),
|
||||
show_checksums=show_checksums,
|
||||
)
|
||||
|
||||
def pull(self, cache, jobs=None, remote=None, show_checksums=False):
|
||||
def pull(
|
||||
self, cache, jobs=None, remote=None, show_checksums=False,
|
||||
):
|
||||
"""Pull data items in a cloud-agnostic way.
|
||||
|
||||
Args:
|
||||
cache (NamedCache): named checksums to pull from the cloud.
|
||||
jobs (int): number of jobs that can be running simultaneously.
|
||||
remote (dvc.remote.base.RemoteBASE): optional remote to pull from.
|
||||
remote (dvc.remote.base.BaseRemote): optional remote to pull from.
|
||||
By default remote from core.remote config option is used.
|
||||
show_checksums (bool): show checksums instead of file names in
|
||||
information messages.
|
||||
"""
|
||||
remote = self.get_remote(remote, "pull")
|
||||
downloaded_items_num = self.repo.cache.local.pull(
|
||||
cache, jobs=jobs, remote=remote, show_checksums=show_checksums
|
||||
|
||||
return remote.pull(
|
||||
self.repo.cache.local,
|
||||
cache,
|
||||
jobs=jobs,
|
||||
show_checksums=show_checksums,
|
||||
)
|
||||
|
||||
if not remote.verify:
|
||||
self._save_pulled_checksums(cache)
|
||||
|
||||
return downloaded_items_num
|
||||
|
||||
def _save_pulled_checksums(self, cache):
|
||||
for checksum in cache["local"].keys():
|
||||
cache_file = self.repo.cache.local.checksum_to_path_info(checksum)
|
||||
if self.repo.cache.local.exists(cache_file):
|
||||
# We can safely save here, as existing corrupted files will be
|
||||
# removed upon status, while files corrupted during download
|
||||
# will not be moved from tmp_file (see `RemoteBASE.download()`)
|
||||
self.repo.state.save(cache_file, checksum)
|
||||
|
||||
def status(self, cache, jobs=None, remote=None, show_checksums=False):
|
||||
def status(
|
||||
self,
|
||||
cache,
|
||||
jobs=None,
|
||||
remote=None,
|
||||
show_checksums=False,
|
||||
log_missing=True,
|
||||
):
|
||||
"""Check status of data items in a cloud-agnostic way.
|
||||
|
||||
Args:
|
||||
cache (NamedCache): named checksums to check status for.
|
||||
jobs (int): number of jobs that can be running simultaneously.
|
||||
remote (dvc.remote.base.RemoteBASE): optional remote to compare
|
||||
remote (dvc.remote.base.BaseRemote): optional remote to compare
|
||||
cache to. By default remote from core.remote config option
|
||||
is used.
|
||||
show_checksums (bool): show checksums instead of file names in
|
||||
information messages.
|
||||
log_missing (bool): log warning messages if file doesn't exist
|
||||
neither in cache, neither in cloud.
|
||||
"""
|
||||
remote = self.get_remote(remote, "status")
|
||||
return self.repo.cache.local.status(
|
||||
cache, jobs=jobs, remote=remote, show_checksums=show_checksums
|
||||
return remote.status(
|
||||
self.repo.cache.local,
|
||||
cache,
|
||||
jobs=jobs,
|
||||
show_checksums=show_checksums,
|
||||
log_missing=log_missing,
|
||||
)
|
||||
|
||||
def get_url_for(self, remote, checksum):
|
||||
remote = self.get_remote(remote)
|
||||
return str(remote.tree.hash_to_path_info(checksum))
|
||||
|
||||
+80
-66
@@ -1,109 +1,123 @@
|
||||
from urllib.parse import urlparse
|
||||
from collections import defaultdict
|
||||
from urllib.parse import urlparse
|
||||
|
||||
import dvc.output as output
|
||||
from dvc.dependency.gs import DependencyGS
|
||||
from dvc.dependency.hdfs import DependencyHDFS
|
||||
from dvc.dependency.http import DependencyHTTP
|
||||
from dvc.dependency.https import DependencyHTTPS
|
||||
from dvc.dependency.local import DependencyLOCAL
|
||||
from dvc.dependency.s3 import DependencyS3
|
||||
from dvc.dependency.ssh import DependencySSH
|
||||
from dvc.dependency.param import DependencyPARAMS
|
||||
from dvc.output.base import OutputBase
|
||||
from dvc.remote import Remote
|
||||
from dvc.dependency.azure import AzureDependency
|
||||
from dvc.dependency.gs import GSDependency
|
||||
from dvc.dependency.hdfs import HDFSDependency
|
||||
from dvc.dependency.http import HTTPDependency
|
||||
from dvc.dependency.https import HTTPSDependency
|
||||
from dvc.dependency.local import LocalDependency
|
||||
from dvc.dependency.param import ParamsDependency
|
||||
from dvc.dependency.s3 import S3Dependency
|
||||
from dvc.dependency.ssh import SSHDependency
|
||||
from dvc.dependency.webdav import WebDAVDependency
|
||||
from dvc.dependency.webdavs import WebDAVSDependency
|
||||
from dvc.dependency.webhdfs import WebHDFSDependency
|
||||
from dvc.output.base import BaseOutput
|
||||
from dvc.scheme import Schemes
|
||||
from .repo import DependencyREPO
|
||||
|
||||
from ..tree import get_cloud_tree
|
||||
from .repo import RepoDependency
|
||||
|
||||
DEPS = [
|
||||
DependencyGS,
|
||||
DependencyHDFS,
|
||||
DependencyHTTP,
|
||||
DependencyHTTPS,
|
||||
DependencyS3,
|
||||
DependencySSH,
|
||||
# NOTE: DependencyLOCAL is the default choice
|
||||
AzureDependency,
|
||||
GSDependency,
|
||||
HDFSDependency,
|
||||
HTTPDependency,
|
||||
HTTPSDependency,
|
||||
S3Dependency,
|
||||
SSHDependency,
|
||||
WebDAVDependency,
|
||||
WebDAVSDependency,
|
||||
WebHDFSDependency,
|
||||
# NOTE: LocalDependency is the default choice
|
||||
]
|
||||
|
||||
DEP_MAP = {
|
||||
Schemes.LOCAL: DependencyLOCAL,
|
||||
Schemes.SSH: DependencySSH,
|
||||
Schemes.S3: DependencyS3,
|
||||
Schemes.GS: DependencyGS,
|
||||
Schemes.HDFS: DependencyHDFS,
|
||||
Schemes.HTTP: DependencyHTTP,
|
||||
Schemes.HTTPS: DependencyHTTPS,
|
||||
Schemes.LOCAL: LocalDependency,
|
||||
Schemes.SSH: SSHDependency,
|
||||
Schemes.S3: S3Dependency,
|
||||
Schemes.AZURE: AzureDependency,
|
||||
Schemes.GS: GSDependency,
|
||||
Schemes.HDFS: HDFSDependency,
|
||||
Schemes.HTTP: HTTPDependency,
|
||||
Schemes.HTTPS: HTTPSDependency,
|
||||
Schemes.WEBDAV: WebDAVDependency,
|
||||
Schemes.WEBDAVS: WebDAVSDependency,
|
||||
Schemes.WEBHDFS: WebHDFSDependency,
|
||||
}
|
||||
|
||||
|
||||
# NOTE: schema for dependencies is basically the same as for outputs, but
|
||||
# without output-specific entries like 'cache' (whether or not output is
|
||||
# cached, see -o and -O flags for `dvc run`) and 'metric' (whether or not
|
||||
# output is a metric file and how to parse it, see `-M` flag for `dvc run`).
|
||||
# output is a metrics file and how to parse it, see `-M` flag for `dvc run`).
|
||||
SCHEMA = output.SCHEMA.copy()
|
||||
del SCHEMA[OutputBase.PARAM_CACHE]
|
||||
del SCHEMA[OutputBase.PARAM_METRIC]
|
||||
SCHEMA.update(DependencyREPO.REPO_SCHEMA)
|
||||
SCHEMA.update(DependencyPARAMS.PARAM_SCHEMA)
|
||||
del SCHEMA[BaseOutput.PARAM_CACHE]
|
||||
del SCHEMA[BaseOutput.PARAM_METRIC]
|
||||
del SCHEMA[BaseOutput.PARAM_DESC]
|
||||
SCHEMA.update(RepoDependency.REPO_SCHEMA)
|
||||
SCHEMA.update(ParamsDependency.PARAM_SCHEMA)
|
||||
|
||||
|
||||
def _get(stage, p, info):
|
||||
parsed = urlparse(p) if p else None
|
||||
if parsed and parsed.scheme == "remote":
|
||||
remote = Remote(stage.repo, name=parsed.netloc)
|
||||
return DEP_MAP[remote.scheme](stage, p, info, remote=remote)
|
||||
tree = get_cloud_tree(stage.repo, name=parsed.netloc)
|
||||
return DEP_MAP[tree.scheme](stage, p, info, tree=tree)
|
||||
|
||||
if info and info.get(DependencyREPO.PARAM_REPO):
|
||||
repo = info.pop(DependencyREPO.PARAM_REPO)
|
||||
return DependencyREPO(repo, stage, p, info)
|
||||
if info and info.get(RepoDependency.PARAM_REPO):
|
||||
repo = info.pop(RepoDependency.PARAM_REPO)
|
||||
return RepoDependency(repo, stage, p, info)
|
||||
|
||||
if info and info.get(DependencyPARAMS.PARAM_PARAMS):
|
||||
params = info.pop(DependencyPARAMS.PARAM_PARAMS)
|
||||
return DependencyPARAMS(stage, p, params)
|
||||
if info and info.get(ParamsDependency.PARAM_PARAMS):
|
||||
params = info.pop(ParamsDependency.PARAM_PARAMS)
|
||||
return ParamsDependency(stage, p, params)
|
||||
|
||||
for d in DEPS:
|
||||
if d.supported(p):
|
||||
return d(stage, p, info)
|
||||
return DependencyLOCAL(stage, p, info)
|
||||
return LocalDependency(stage, p, info)
|
||||
|
||||
|
||||
def loadd_from(stage, d_list):
|
||||
ret = []
|
||||
for d in d_list:
|
||||
p = d.pop(OutputBase.PARAM_PATH, None)
|
||||
p = d.pop(BaseOutput.PARAM_PATH, None)
|
||||
ret.append(_get(stage, p, d))
|
||||
return ret
|
||||
|
||||
|
||||
def loads_from(stage, s_list, erepo=None):
|
||||
ret = []
|
||||
for s in s_list:
|
||||
info = {DependencyREPO.PARAM_REPO: erepo} if erepo else {}
|
||||
ret.append(_get(stage, s, info))
|
||||
return ret
|
||||
assert isinstance(s_list, list)
|
||||
info = {RepoDependency.PARAM_REPO: erepo} if erepo else {}
|
||||
return [_get(stage, s, info.copy()) for s in s_list]
|
||||
|
||||
|
||||
def _parse_params(path_params):
|
||||
path, _, params_str = path_params.rpartition(":")
|
||||
params = params_str.split(",")
|
||||
return path, params
|
||||
def _merge_params(s_list):
|
||||
d = defaultdict(list)
|
||||
default_file = ParamsDependency.DEFAULT_PARAMS_FILE
|
||||
for key in s_list:
|
||||
if isinstance(key, str):
|
||||
d[default_file].append(key)
|
||||
continue
|
||||
if not isinstance(key, dict):
|
||||
msg = "Only list of str/dict is supported. Got: "
|
||||
msg += f"'{type(key).__name__}'."
|
||||
raise ValueError(msg)
|
||||
|
||||
for k, params in key.items():
|
||||
if not isinstance(params, list):
|
||||
msg = "Expected list of params for custom params file "
|
||||
msg += f"'{k}', got '{type(params).__name__}'."
|
||||
raise ValueError(msg)
|
||||
d[k].extend(params)
|
||||
return d
|
||||
|
||||
|
||||
def loads_params(stage, s_list):
|
||||
# Creates an object for each unique file that is referenced in the list
|
||||
params_by_path = defaultdict(list)
|
||||
for s in s_list:
|
||||
path, params = _parse_params(s)
|
||||
params_by_path[path].extend(params)
|
||||
|
||||
d_list = []
|
||||
for path, params in params_by_path.items():
|
||||
d_list.append(
|
||||
{
|
||||
OutputBase.PARAM_PATH: path,
|
||||
DependencyPARAMS.PARAM_PARAMS: params,
|
||||
}
|
||||
)
|
||||
|
||||
return loadd_from(stage, d_list)
|
||||
d = _merge_params(s_list)
|
||||
return [
|
||||
ParamsDependency(stage, path, params) for path, params in d.items()
|
||||
]
|
||||
|
||||
@@ -0,0 +1,8 @@
|
||||
from dvc.dependency.base import BaseDependency
|
||||
from dvc.output.base import BaseOutput
|
||||
|
||||
from ..tree.azure import AzureTree
|
||||
|
||||
|
||||
class AzureDependency(BaseDependency, BaseOutput):
|
||||
TREE_CLS = AzureTree
|
||||
+11
-9
@@ -1,31 +1,33 @@
|
||||
from typing import Type
|
||||
|
||||
from dvc.exceptions import DvcException
|
||||
|
||||
|
||||
class DependencyDoesNotExistError(DvcException):
|
||||
def __init__(self, path):
|
||||
msg = "dependency '{}' does not exist".format(path)
|
||||
msg = f"dependency '{path}' does not exist"
|
||||
super().__init__(msg)
|
||||
|
||||
|
||||
class DependencyIsNotFileOrDirError(DvcException):
|
||||
def __init__(self, path):
|
||||
msg = "dependency '{}' is not a file or directory".format(path)
|
||||
msg = f"dependency '{path}' is not a file or directory"
|
||||
super().__init__(msg)
|
||||
|
||||
|
||||
class DependencyIsStageFileError(DvcException):
|
||||
def __init__(self, path):
|
||||
super().__init__(
|
||||
"Stage file '{}' cannot be a dependency.".format(path)
|
||||
)
|
||||
super().__init__(f"Stage file '{path}' cannot be a dependency.")
|
||||
|
||||
|
||||
class DependencyBase(object):
|
||||
class BaseDependency:
|
||||
IS_DEPENDENCY = True
|
||||
|
||||
DoesNotExistError = DependencyDoesNotExistError
|
||||
IsNotFileOrDirError = DependencyIsNotFileOrDirError
|
||||
IsStageFileError = DependencyIsStageFileError
|
||||
DoesNotExistError = DependencyDoesNotExistError # type: Type[DvcException]
|
||||
IsNotFileOrDirError = (
|
||||
DependencyIsNotFileOrDirError
|
||||
) # type: Type[DvcException]
|
||||
IsStageFileError = DependencyIsStageFileError # type: Type[DvcException]
|
||||
|
||||
def update(self, rev=None):
|
||||
pass
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
from dvc.dependency.base import DependencyBase
|
||||
from dvc.output.gs import OutputGS
|
||||
from dvc.dependency.base import BaseDependency
|
||||
from dvc.output.gs import GSOutput
|
||||
|
||||
|
||||
class DependencyGS(DependencyBase, OutputGS):
|
||||
class GSDependency(BaseDependency, GSOutput):
|
||||
pass
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
from dvc.dependency.base import DependencyBase
|
||||
from dvc.output.hdfs import OutputHDFS
|
||||
from dvc.dependency.base import BaseDependency
|
||||
from dvc.output.hdfs import HDFSOutput
|
||||
|
||||
|
||||
class DependencyHDFS(DependencyBase, OutputHDFS):
|
||||
class HDFSDependency(BaseDependency, HDFSOutput):
|
||||
pass
|
||||
|
||||
@@ -1,7 +1,8 @@
|
||||
from dvc.dependency.base import DependencyBase
|
||||
from dvc.output.base import OutputBase
|
||||
from dvc.remote.http import RemoteHTTP
|
||||
from dvc.dependency.base import BaseDependency
|
||||
from dvc.output.base import BaseOutput
|
||||
|
||||
from ..tree.http import HTTPTree
|
||||
|
||||
|
||||
class DependencyHTTP(DependencyBase, OutputBase):
|
||||
REMOTE = RemoteHTTP
|
||||
class HTTPDependency(BaseDependency, BaseOutput):
|
||||
TREE_CLS = HTTPTree
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
from .http import DependencyHTTP
|
||||
from dvc.remote.https import RemoteHTTPS
|
||||
from ..tree.https import HTTPSTree
|
||||
from .http import HTTPDependency
|
||||
|
||||
|
||||
class DependencyHTTPS(DependencyHTTP):
|
||||
REMOTE = RemoteHTTPS
|
||||
class HTTPSDependency(HTTPDependency):
|
||||
TREE_CLS = HTTPSTree
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
from dvc.dependency.base import DependencyBase
|
||||
from dvc.output.local import OutputLOCAL
|
||||
from dvc.dependency.base import BaseDependency
|
||||
from dvc.output.local import LocalOutput
|
||||
|
||||
|
||||
class DependencyLOCAL(DependencyBase, OutputLOCAL):
|
||||
class LocalDependency(BaseDependency, LocalOutput):
|
||||
pass
|
||||
|
||||
+47
-33
@@ -1,13 +1,13 @@
|
||||
import os
|
||||
import yaml
|
||||
from collections import defaultdict
|
||||
|
||||
import dpath.util
|
||||
from voluptuous import Any
|
||||
|
||||
from dvc.compat import fspath_py35
|
||||
from dvc.dependency.local import DependencyLOCAL
|
||||
from dvc.dependency.local import LocalDependency
|
||||
from dvc.exceptions import DvcException
|
||||
from dvc.hash_info import HashInfo
|
||||
from dvc.utils.serialize import LOADERS, ParseError
|
||||
|
||||
|
||||
class MissingParamsError(DvcException):
|
||||
@@ -18,7 +18,7 @@ class BadParamFileError(DvcException):
|
||||
pass
|
||||
|
||||
|
||||
class DependencyPARAMS(DependencyLOCAL):
|
||||
class ParamsDependency(LocalDependency):
|
||||
PARAM_PARAMS = "params"
|
||||
PARAM_SCHEMA = {PARAM_PARAMS: Any(dict, list, None)}
|
||||
DEFAULT_PARAMS_FILE = "params.yaml"
|
||||
@@ -32,7 +32,7 @@ class DependencyPARAMS(DependencyLOCAL):
|
||||
else:
|
||||
assert isinstance(params, dict)
|
||||
self.params = list(params.keys())
|
||||
info = params
|
||||
info = {self.PARAM_PARAMS: params}
|
||||
|
||||
super().__init__(
|
||||
stage,
|
||||
@@ -41,58 +41,72 @@ class DependencyPARAMS(DependencyLOCAL):
|
||||
info=info,
|
||||
)
|
||||
|
||||
def save(self):
|
||||
super().save()
|
||||
self.info = self.save_info()
|
||||
def dumpd(self):
|
||||
ret = super().dumpd()
|
||||
if not self.hash_info:
|
||||
ret[self.PARAM_PARAMS] = self.params
|
||||
return ret
|
||||
|
||||
def status(self):
|
||||
status = super().status()
|
||||
def fill_values(self, values=None):
|
||||
"""Load params values dynamically."""
|
||||
if not values:
|
||||
return
|
||||
info = {}
|
||||
for param in self.params:
|
||||
if param in values:
|
||||
info[param] = values[param]
|
||||
self.hash_info = HashInfo(self.PARAM_PARAMS, info)
|
||||
|
||||
if status[str(self)] == "deleted":
|
||||
def workspace_status(self):
|
||||
status = super().workspace_status()
|
||||
|
||||
if status.get(str(self)) == "deleted":
|
||||
return status
|
||||
|
||||
status = defaultdict(dict)
|
||||
info = self._get_info()
|
||||
info = self.hash_info.value if self.hash_info else {}
|
||||
actual = self.read_params()
|
||||
for param in self.params:
|
||||
if param not in info.keys():
|
||||
if param not in actual.keys():
|
||||
st = "deleted"
|
||||
elif param not in self.info:
|
||||
elif param not in info:
|
||||
st = "new"
|
||||
elif info[param] != self.info[param]:
|
||||
elif actual[param] != info[param]:
|
||||
st = "modified"
|
||||
else:
|
||||
assert info[param] == self.info[param]
|
||||
assert actual[param] == info[param]
|
||||
continue
|
||||
|
||||
status[str(self)][param] = st
|
||||
|
||||
return status
|
||||
|
||||
def dumpd(self):
|
||||
return {
|
||||
self.PARAM_PATH: self.def_path,
|
||||
self.PARAM_PARAMS: self.info or self.params,
|
||||
}
|
||||
def status(self):
|
||||
return self.workspace_status()
|
||||
|
||||
def _get_info(self):
|
||||
def read_params(self):
|
||||
if not self.exists:
|
||||
return {}
|
||||
|
||||
with open(fspath_py35(self.path_info), "r") as fobj:
|
||||
try:
|
||||
config = yaml.safe_load(fobj)
|
||||
except yaml.YAMLError as exc:
|
||||
raise BadParamFileError(
|
||||
"Unable to read parameters from '{}'".format(self)
|
||||
) from exc
|
||||
suffix = self.path_info.suffix.lower()
|
||||
loader = LOADERS[suffix]
|
||||
try:
|
||||
config = loader(self.path_info, tree=self.repo.tree)
|
||||
except ParseError as exc:
|
||||
raise BadParamFileError(
|
||||
f"Unable to read parameters from '{self}'"
|
||||
) from exc
|
||||
|
||||
ret = {}
|
||||
for param in self.params:
|
||||
ret[param] = dpath.util.get(config, param, separator=".")
|
||||
try:
|
||||
ret[param] = dpath.util.get(config, param, separator=".")
|
||||
except KeyError:
|
||||
pass
|
||||
return ret
|
||||
|
||||
def save_info(self):
|
||||
info = self._get_info()
|
||||
def get_hash(self):
|
||||
info = self.read_params()
|
||||
|
||||
missing_params = set(self.params) - set(info.keys())
|
||||
if missing_params:
|
||||
@@ -102,4 +116,4 @@ class DependencyPARAMS(DependencyLOCAL):
|
||||
)
|
||||
)
|
||||
|
||||
return info
|
||||
return HashInfo(self.PARAM_PARAMS, info)
|
||||
|
||||
+30
-27
@@ -1,13 +1,9 @@
|
||||
import os
|
||||
|
||||
from voluptuous import Required
|
||||
|
||||
from .local import DependencyLOCAL
|
||||
from dvc.exceptions import OutputNotFoundError
|
||||
from dvc.path_info import PathInfo
|
||||
from .local import LocalDependency
|
||||
|
||||
|
||||
class DependencyREPO(DependencyLOCAL):
|
||||
class RepoDependency(LocalDependency):
|
||||
PARAM_REPO = "repo"
|
||||
PARAM_URL = "url"
|
||||
PARAM_REV = "rev"
|
||||
@@ -25,7 +21,7 @@ class DependencyREPO(DependencyLOCAL):
|
||||
self.def_repo = def_repo
|
||||
super().__init__(stage, *args, **kwargs)
|
||||
|
||||
def _parse_path(self, remote, path):
|
||||
def _parse_path(self, tree, path):
|
||||
return None
|
||||
|
||||
@property
|
||||
@@ -41,31 +37,31 @@ class DependencyREPO(DependencyLOCAL):
|
||||
def __str__(self):
|
||||
return "{} ({})".format(self.def_path, self.def_repo[self.PARAM_URL])
|
||||
|
||||
def _make_repo(self, *, locked=True):
|
||||
def _make_repo(self, *, locked=True, **kwargs):
|
||||
from dvc.external_repo import external_repo
|
||||
|
||||
d = self.def_repo
|
||||
rev = (d.get("rev_lock") if locked else None) or d.get("rev")
|
||||
return external_repo(d["url"], rev=rev)
|
||||
return external_repo(d["url"], rev=rev, **kwargs)
|
||||
|
||||
def _get_checksum(self, locked=True):
|
||||
with self._make_repo(locked=locked) as repo:
|
||||
try:
|
||||
return repo.find_out_by_relpath(self.def_path).info["md5"]
|
||||
except OutputNotFoundError:
|
||||
path = PathInfo(os.path.join(repo.root_dir, self.def_path))
|
||||
# We are polluting our repo cache with some dir listing here
|
||||
return self.repo.cache.local.get_checksum(path)
|
||||
def _get_hash(self, locked=True):
|
||||
# we want stream but not fetch, so DVC out directories are
|
||||
# walked, but dir contents is not fetched
|
||||
with self._make_repo(locked=locked, fetch=False, stream=True) as repo:
|
||||
return repo.get_checksum(self.def_path)
|
||||
|
||||
def status(self):
|
||||
current_checksum = self._get_checksum(locked=True)
|
||||
updated_checksum = self._get_checksum(locked=False)
|
||||
def workspace_status(self):
|
||||
current = self._get_hash(locked=True)
|
||||
updated = self._get_hash(locked=False)
|
||||
|
||||
if current_checksum != updated_checksum:
|
||||
if current != updated:
|
||||
return {str(self): "update available"}
|
||||
|
||||
return {}
|
||||
|
||||
def status(self):
|
||||
return self.workspace_status()
|
||||
|
||||
def save(self):
|
||||
pass
|
||||
|
||||
@@ -73,18 +69,25 @@ class DependencyREPO(DependencyLOCAL):
|
||||
return {self.PARAM_PATH: self.def_path, self.PARAM_REPO: self.def_repo}
|
||||
|
||||
def download(self, to):
|
||||
with self._make_repo() as repo:
|
||||
cache = self.repo.cache.local
|
||||
|
||||
with self._make_repo(cache_dir=cache.cache_dir) as repo:
|
||||
if self.def_repo.get(self.PARAM_REV_LOCK) is None:
|
||||
self.def_repo[self.PARAM_REV_LOCK] = repo.scm.get_rev()
|
||||
self.def_repo[self.PARAM_REV_LOCK] = repo.get_rev()
|
||||
|
||||
if hasattr(repo, "cache"):
|
||||
repo.cache.local.cache_dir = self.repo.cache.local.cache_dir
|
||||
_, _, cache_infos = repo.fetch_external([self.def_path])
|
||||
|
||||
repo.pull_to(self.def_path, to.path_info)
|
||||
cache.checkout(to.path_info, cache_infos[0])
|
||||
|
||||
def update(self, rev=None):
|
||||
if rev:
|
||||
self.def_repo[self.PARAM_REV] = rev
|
||||
|
||||
with self._make_repo(locked=False) as repo:
|
||||
self.def_repo[self.PARAM_REV_LOCK] = repo.scm.get_rev()
|
||||
self.def_repo[self.PARAM_REV_LOCK] = repo.get_rev()
|
||||
|
||||
def changed_checksum(self):
|
||||
# From current repo point of view what describes RepoDependency is its
|
||||
# origin project url and rev_lock, and it makes RepoDependency
|
||||
# immutable, hence its impossible for checksum to change.
|
||||
return False
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
from dvc.dependency.base import DependencyBase
|
||||
from dvc.output.s3 import OutputS3
|
||||
from dvc.dependency.base import BaseDependency
|
||||
from dvc.output.s3 import S3Output
|
||||
|
||||
|
||||
class DependencyS3(DependencyBase, OutputS3):
|
||||
class S3Dependency(BaseDependency, S3Output):
|
||||
pass
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
from dvc.dependency.base import DependencyBase
|
||||
from dvc.output.ssh import OutputSSH
|
||||
from dvc.dependency.base import BaseDependency
|
||||
from dvc.output.ssh import SSHOutput
|
||||
|
||||
|
||||
class DependencySSH(DependencyBase, OutputSSH):
|
||||
class SSHDependency(BaseDependency, SSHOutput):
|
||||
pass
|
||||
|
||||
@@ -0,0 +1,8 @@
|
||||
from dvc.dependency.base import BaseDependency
|
||||
from dvc.output.base import BaseOutput
|
||||
|
||||
from ..tree.webdav import WebDAVTree
|
||||
|
||||
|
||||
class WebDAVDependency(BaseDependency, BaseOutput):
|
||||
TREE_CLS = WebDAVTree
|
||||
@@ -0,0 +1,6 @@
|
||||
from ..tree.webdavs import WebDAVSTree
|
||||
from .webdav import WebDAVDependency
|
||||
|
||||
|
||||
class WebDAVSDependency(WebDAVDependency):
|
||||
TREE_CLS = WebDAVSTree
|
||||
@@ -0,0 +1,6 @@
|
||||
from dvc.dependency.base import BaseDependency
|
||||
from dvc.output.webhdfs import WebHDFSOutput
|
||||
|
||||
|
||||
class WebHDFSDependency(BaseDependency, WebHDFSOutput):
|
||||
pass
|
||||
+102
@@ -0,0 +1,102 @@
|
||||
import posixpath
|
||||
from operator import itemgetter
|
||||
|
||||
from pygtrie import Trie
|
||||
|
||||
from .hash_info import HashInfo
|
||||
|
||||
|
||||
def _diff(ancestor, other, allow_removed=False):
|
||||
from dictdiffer import diff
|
||||
|
||||
from dvc.exceptions import MergeError
|
||||
|
||||
allowed = ["add"]
|
||||
if allow_removed:
|
||||
allowed.append("remove")
|
||||
|
||||
result = list(diff(ancestor, other))
|
||||
for typ, _, _ in result:
|
||||
if typ not in allowed:
|
||||
raise MergeError(
|
||||
"unable to auto-merge directories with diff that contains "
|
||||
f"'{typ}'ed files"
|
||||
)
|
||||
return result
|
||||
|
||||
|
||||
def _merge(ancestor, our, their):
|
||||
import copy
|
||||
|
||||
from dictdiffer import patch
|
||||
|
||||
our_diff = _diff(ancestor, our)
|
||||
if not our_diff:
|
||||
return copy.deepcopy(their)
|
||||
|
||||
their_diff = _diff(ancestor, their)
|
||||
if not their_diff:
|
||||
return copy.deepcopy(our)
|
||||
|
||||
# make sure there are no conflicting files
|
||||
_diff(our, their, allow_removed=True)
|
||||
|
||||
return patch(our_diff + their_diff, ancestor)
|
||||
|
||||
|
||||
class DirInfo:
|
||||
PARAM_RELPATH = "relpath"
|
||||
|
||||
def __init__(self):
|
||||
self.trie = Trie()
|
||||
|
||||
@property
|
||||
def size(self):
|
||||
try:
|
||||
return sum(
|
||||
hash_info.size
|
||||
for _, hash_info in self.trie.iteritems() # noqa: B301
|
||||
)
|
||||
except TypeError:
|
||||
return None
|
||||
|
||||
@property
|
||||
def nfiles(self):
|
||||
return len(self.trie)
|
||||
|
||||
def items(self, path_info=None):
|
||||
for key, hash_info in self.trie.iteritems(): # noqa: B301
|
||||
path = posixpath.sep.join(key)
|
||||
if path_info is not None:
|
||||
path = path_info / path
|
||||
yield path, hash_info
|
||||
|
||||
@classmethod
|
||||
def from_list(cls, lst):
|
||||
ret = DirInfo()
|
||||
for _entry in lst:
|
||||
entry = _entry.copy()
|
||||
relpath = entry.pop(cls.PARAM_RELPATH)
|
||||
parts = tuple(relpath.split(posixpath.sep))
|
||||
ret.trie[parts] = HashInfo.from_dict(entry)
|
||||
return ret
|
||||
|
||||
def to_list(self):
|
||||
# Sorting the list by path to ensure reproducibility
|
||||
return sorted(
|
||||
(
|
||||
{
|
||||
# NOTE: not using hash_info.to_dict() because we don't want
|
||||
# size/nfiles fields at this point.
|
||||
hash_info.name: hash_info.value,
|
||||
self.PARAM_RELPATH: posixpath.sep.join(parts),
|
||||
}
|
||||
for parts, hash_info in self.trie.iteritems() # noqa: B301
|
||||
),
|
||||
key=itemgetter(self.PARAM_RELPATH),
|
||||
)
|
||||
|
||||
def merge(self, ancestor, their):
|
||||
merged = DirInfo()
|
||||
merged.trie = _merge(ancestor.trie, self.trie, their.trie)
|
||||
return merged
|
||||
+341
@@ -0,0 +1,341 @@
|
||||
import collections
|
||||
import contextlib
|
||||
import logging
|
||||
import os
|
||||
|
||||
from voluptuous import MultipleInvalid
|
||||
|
||||
from dvc.exceptions import DvcException
|
||||
from dvc.stage import serialize
|
||||
from dvc.stage.exceptions import (
|
||||
StageFileBadNameError,
|
||||
StageFileDoesNotExistError,
|
||||
StageFileFormatError,
|
||||
StageFileIsNotDvcFileError,
|
||||
)
|
||||
from dvc.stage.loader import SingleStageLoader, StageLoader
|
||||
from dvc.utils import relpath
|
||||
from dvc.utils.collections import apply_diff
|
||||
from dvc.utils.serialize import (
|
||||
dump_yaml,
|
||||
load_yaml,
|
||||
modify_yaml,
|
||||
parse_yaml,
|
||||
parse_yaml_for_update,
|
||||
)
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
DVC_FILE = "Dvcfile"
|
||||
DVC_FILE_SUFFIX = ".dvc"
|
||||
PIPELINE_FILE = "dvc.yaml"
|
||||
PIPELINE_LOCK = "dvc.lock"
|
||||
|
||||
|
||||
class LockfileCorruptedError(DvcException):
|
||||
pass
|
||||
|
||||
|
||||
class ParametrizedDumpError(DvcException):
|
||||
pass
|
||||
|
||||
|
||||
def is_valid_filename(path):
|
||||
return path.endswith(DVC_FILE_SUFFIX) or os.path.basename(path) in [
|
||||
DVC_FILE,
|
||||
PIPELINE_FILE,
|
||||
]
|
||||
|
||||
|
||||
def is_dvc_file(path):
|
||||
return os.path.isfile(path) and (
|
||||
is_valid_filename(path) or is_lock_file(path)
|
||||
)
|
||||
|
||||
|
||||
def is_lock_file(path):
|
||||
return os.path.basename(path) == PIPELINE_LOCK
|
||||
|
||||
|
||||
def check_dvc_filename(path):
|
||||
if not is_valid_filename(path):
|
||||
raise StageFileBadNameError(
|
||||
"bad DVC-file name '{}'. DVC-files should be named "
|
||||
"'Dvcfile' or have a '.dvc' suffix (e.g. '{}.dvc').".format(
|
||||
relpath(path), os.path.basename(path)
|
||||
)
|
||||
)
|
||||
|
||||
|
||||
class FileMixin:
|
||||
SCHEMA = None
|
||||
|
||||
def __init__(self, repo, path, verify=True, **kwargs):
|
||||
self.repo = repo
|
||||
self.path = path
|
||||
self.verify = verify
|
||||
|
||||
def __repr__(self):
|
||||
return "{}: {}".format(
|
||||
self.__class__.__name__, relpath(self.path, self.repo.root_dir)
|
||||
)
|
||||
|
||||
def __hash__(self):
|
||||
return hash(self.path)
|
||||
|
||||
def __eq__(self, other):
|
||||
return self.repo == other.repo and os.path.abspath(
|
||||
self.path
|
||||
) == os.path.abspath(other.path)
|
||||
|
||||
def __str__(self):
|
||||
return f"{self.__class__.__name__}: {self.relpath}"
|
||||
|
||||
@property
|
||||
def relpath(self):
|
||||
return relpath(self.path)
|
||||
|
||||
def exists(self):
|
||||
return self.repo.tree.exists(self.path)
|
||||
|
||||
def _load(self):
|
||||
# it raises the proper exceptions by priority:
|
||||
# 1. when the file doesn't exists
|
||||
# 2. filename is not a DVC-file
|
||||
# 3. path doesn't represent a regular file
|
||||
if not self.exists():
|
||||
raise StageFileDoesNotExistError(self.path)
|
||||
if self.verify:
|
||||
check_dvc_filename(self.path)
|
||||
if not self.repo.tree.isfile(self.path):
|
||||
raise StageFileIsNotDvcFileError(self.path)
|
||||
|
||||
with self.repo.tree.open(self.path) as fd:
|
||||
stage_text = fd.read()
|
||||
d = parse_yaml(stage_text, self.path)
|
||||
self.validate(d, self.relpath)
|
||||
return d, stage_text
|
||||
|
||||
@classmethod
|
||||
def validate(cls, d, fname=None):
|
||||
assert isinstance(cls.SCHEMA, collections.abc.Callable)
|
||||
try:
|
||||
cls.SCHEMA(d) # pylint: disable=not-callable
|
||||
except MultipleInvalid as exc:
|
||||
raise StageFileFormatError(f"'{fname}' format error: {exc}")
|
||||
|
||||
def remove(self, force=False): # pylint: disable=unused-argument
|
||||
with contextlib.suppress(FileNotFoundError):
|
||||
os.unlink(self.path)
|
||||
|
||||
def dump(self, stage, **kwargs):
|
||||
raise NotImplementedError
|
||||
|
||||
def merge(self, ancestor, other):
|
||||
raise NotImplementedError
|
||||
|
||||
|
||||
class SingleStageFile(FileMixin):
|
||||
from dvc.schema import COMPILED_SINGLE_STAGE_SCHEMA as SCHEMA
|
||||
|
||||
@property
|
||||
def stage(self):
|
||||
data, raw = self._load()
|
||||
return SingleStageLoader.load_stage(self, data, raw)
|
||||
|
||||
@property
|
||||
def stages(self):
|
||||
data, raw = self._load()
|
||||
return SingleStageLoader(self, data, raw)
|
||||
|
||||
def dump(self, stage, **kwargs):
|
||||
"""Dumps given stage appropriately in the dvcfile."""
|
||||
from dvc.stage import PipelineStage
|
||||
|
||||
assert not isinstance(stage, PipelineStage)
|
||||
if self.verify:
|
||||
check_dvc_filename(self.path)
|
||||
logger.debug(
|
||||
"Saving information to '{file}'.".format(file=relpath(self.path))
|
||||
)
|
||||
dump_yaml(self.path, serialize.to_single_stage_file(stage))
|
||||
self.repo.scm.track_file(self.relpath)
|
||||
|
||||
def remove_stage(self, stage): # pylint: disable=unused-argument
|
||||
self.remove()
|
||||
|
||||
def merge(self, ancestor, other):
|
||||
assert isinstance(ancestor, SingleStageFile)
|
||||
assert isinstance(other, SingleStageFile)
|
||||
|
||||
stage = self.stage
|
||||
stage.merge(ancestor.stage, other.stage)
|
||||
self.dump(stage)
|
||||
|
||||
|
||||
class PipelineFile(FileMixin):
|
||||
"""Abstraction for pipelines file, .yaml + .lock combined."""
|
||||
|
||||
from dvc.schema import COMPILED_MULTI_STAGE_SCHEMA as SCHEMA
|
||||
|
||||
@property
|
||||
def _lockfile(self):
|
||||
return Lockfile(self.repo, os.path.splitext(self.path)[0] + ".lock")
|
||||
|
||||
def dump(
|
||||
self, stage, update_pipeline=True, update_lock=True, **kwargs
|
||||
): # pylint: disable=arguments-differ
|
||||
"""Dumps given stage appropriately in the dvcfile."""
|
||||
from dvc.stage import PipelineStage
|
||||
|
||||
assert isinstance(stage, PipelineStage)
|
||||
if self.verify:
|
||||
check_dvc_filename(self.path)
|
||||
|
||||
if update_pipeline and not stage.is_data_source:
|
||||
self._dump_pipeline_file(stage)
|
||||
|
||||
if update_lock:
|
||||
self._dump_lockfile(stage)
|
||||
|
||||
def _dump_lockfile(self, stage):
|
||||
self._lockfile.dump(stage)
|
||||
|
||||
@staticmethod
|
||||
def _check_if_parametrized(stage):
|
||||
if stage.raw_data.parametrized:
|
||||
raise ParametrizedDumpError(f"cannot dump a parametrized {stage}")
|
||||
|
||||
def _dump_pipeline_file(self, stage):
|
||||
self._check_if_parametrized(stage)
|
||||
stage_data = serialize.to_pipeline_file(stage)
|
||||
|
||||
with modify_yaml(self.path, tree=self.repo.tree) as data:
|
||||
if not data:
|
||||
logger.info("Creating '%s'", self.relpath)
|
||||
|
||||
data["stages"] = data.get("stages", {})
|
||||
existing_entry = stage.name in data["stages"]
|
||||
action = "Modifying" if existing_entry else "Adding"
|
||||
logger.info(
|
||||
"%s stage '%s' in '%s'", action, stage.name, self.relpath
|
||||
)
|
||||
|
||||
if existing_entry:
|
||||
orig_stage_data = data["stages"][stage.name]
|
||||
apply_diff(stage_data[stage.name], orig_stage_data)
|
||||
else:
|
||||
data["stages"].update(stage_data)
|
||||
|
||||
self.repo.scm.track_file(self.relpath)
|
||||
|
||||
@property
|
||||
def stage(self):
|
||||
raise DvcException(
|
||||
"PipelineFile has multiple stages. Please specify it's name."
|
||||
)
|
||||
|
||||
@property
|
||||
def stages(self):
|
||||
data, _ = self._load()
|
||||
lockfile_data = self._lockfile.load()
|
||||
return StageLoader(self, data, lockfile_data)
|
||||
|
||||
def remove(self, force=False):
|
||||
if not force:
|
||||
logger.warning("Cannot remove pipeline file.")
|
||||
return
|
||||
|
||||
super().remove()
|
||||
self._lockfile.remove()
|
||||
|
||||
def remove_stage(self, stage):
|
||||
self._lockfile.remove_stage(stage)
|
||||
if not self.exists():
|
||||
return
|
||||
|
||||
with open(self.path, "r") as f:
|
||||
d = parse_yaml_for_update(f.read(), self.path)
|
||||
|
||||
self.validate(d, self.path)
|
||||
if stage.name not in d.get("stages", {}):
|
||||
return
|
||||
|
||||
logger.debug("Removing '%s' from '%s'", stage.name, self.path)
|
||||
del d["stages"][stage.name]
|
||||
|
||||
if d["stages"]:
|
||||
dump_yaml(self.path, d)
|
||||
else:
|
||||
super().remove()
|
||||
|
||||
def merge(self, ancestor, other):
|
||||
raise NotImplementedError
|
||||
|
||||
|
||||
class Lockfile(FileMixin):
|
||||
from dvc.schema import COMPILED_LOCKFILE_SCHEMA as SCHEMA
|
||||
|
||||
def load(self):
|
||||
if not self.exists():
|
||||
return {}
|
||||
|
||||
data = load_yaml(self.path, tree=self.repo.tree)
|
||||
try:
|
||||
self.validate(data, fname=self.relpath)
|
||||
except StageFileFormatError:
|
||||
raise LockfileCorruptedError(
|
||||
f"Lockfile '{self.relpath}' is corrupted."
|
||||
)
|
||||
return data
|
||||
|
||||
def dump(self, stage, **kwargs):
|
||||
stage_data = serialize.to_lockfile(stage)
|
||||
|
||||
with modify_yaml(self.path, tree=self.repo.tree) as data:
|
||||
if not data:
|
||||
logger.info("Generating lock file '%s'", self.relpath)
|
||||
|
||||
modified = data.get(stage.name, {}) != stage_data.get(
|
||||
stage.name, {}
|
||||
)
|
||||
if modified:
|
||||
logger.info("Updating lock file '%s'", self.relpath)
|
||||
data.update(stage_data)
|
||||
|
||||
if modified:
|
||||
self.repo.scm.track_file(self.relpath)
|
||||
|
||||
def remove_stage(self, stage):
|
||||
if not self.exists():
|
||||
return
|
||||
|
||||
with open(self.path) as f:
|
||||
d = parse_yaml_for_update(f.read(), self.path)
|
||||
self.validate(d, self.path)
|
||||
|
||||
if stage.name not in d:
|
||||
return
|
||||
|
||||
logger.debug("Removing '%s' from '%s'", stage.name, self.path)
|
||||
del d[stage.name]
|
||||
|
||||
if d:
|
||||
dump_yaml(self.path, d)
|
||||
else:
|
||||
self.remove()
|
||||
|
||||
def merge(self, ancestor, other):
|
||||
raise NotImplementedError
|
||||
|
||||
|
||||
class Dvcfile:
|
||||
def __new__(cls, repo, path, **kwargs):
|
||||
assert path
|
||||
assert repo
|
||||
|
||||
_, ext = os.path.splitext(path)
|
||||
if ext in [".yaml", ".yml"]:
|
||||
return PipelineFile(repo, path, **kwargs)
|
||||
# fallback to single stage file for better error messages
|
||||
return SingleStageFile(repo, path, **kwargs)
|
||||
@@ -1,2 +1,4 @@
|
||||
DVC_CHECKPOINT = "DVC_CHECKPOINT"
|
||||
DVC_DAEMON = "DVC_DAEMON"
|
||||
DVC_PAGER = "DVC_PAGER"
|
||||
DVC_ROOT = "DVC_ROOT"
|
||||
|
||||
+93
-55
@@ -1,11 +1,16 @@
|
||||
"""Exceptions raised by the dvc."""
|
||||
from funcy import first
|
||||
|
||||
from dvc.utils import relpath, format_link
|
||||
from dvc.utils import error_link, format_link, relpath
|
||||
|
||||
|
||||
class DvcException(Exception):
|
||||
"""Base class for all dvc exceptions."""
|
||||
|
||||
def __init__(self, msg, *args):
|
||||
assert msg
|
||||
super().__init__(msg, *args)
|
||||
|
||||
|
||||
class InvalidArgumentError(ValueError, DvcException):
|
||||
"""Thrown if arguments are invalid."""
|
||||
@@ -23,16 +28,21 @@ class OutputDuplicationError(DvcException):
|
||||
def __init__(self, output, stages):
|
||||
assert isinstance(output, str)
|
||||
assert all(hasattr(stage, "relpath") for stage in stages)
|
||||
msg = (
|
||||
"file/directory '{}' is specified as an output in more than one "
|
||||
"stage: {}\n"
|
||||
"This is not allowed. Consider using a different output name."
|
||||
).format(output, "\n ".join(s.relpath for s in stages))
|
||||
if len(stages) == 1:
|
||||
msg = "output '{}' is already specified in {}.".format(
|
||||
output, first(stages)
|
||||
)
|
||||
else:
|
||||
msg = "output '{}' is already specified in stages:\n{}".format(
|
||||
output, "\n".join(f"\t- {s.addressing}" for s in stages),
|
||||
)
|
||||
super().__init__(msg)
|
||||
self.stages = stages
|
||||
self.output = output
|
||||
|
||||
|
||||
class OutputNotFoundError(DvcException):
|
||||
"""Thrown if a file/directory not found in repository pipelines.
|
||||
"""Thrown if a file/directory is not found as an output in any pipeline.
|
||||
|
||||
Args:
|
||||
output (unicode): path to the file/directory.
|
||||
@@ -60,8 +70,8 @@ class StagePathAsOutputError(DvcException):
|
||||
def __init__(self, stage, output):
|
||||
assert isinstance(output, str)
|
||||
super().__init__(
|
||||
"'{stage}' is within an output '{output}' of another stage".format(
|
||||
stage=stage.relpath, output=output
|
||||
"{stage} is within an output '{output}' of another stage".format(
|
||||
stage=stage, output=output
|
||||
)
|
||||
)
|
||||
|
||||
@@ -77,10 +87,7 @@ class CircularDependencyError(DvcException):
|
||||
def __init__(self, dependency):
|
||||
assert isinstance(dependency, str)
|
||||
|
||||
msg = (
|
||||
"file/directory '{}' is specified as an output and as a "
|
||||
"dependency."
|
||||
)
|
||||
msg = "'{}' is specified as an output and as a dependency."
|
||||
super().__init__(msg.format(dependency))
|
||||
|
||||
|
||||
@@ -94,11 +101,11 @@ class ArgumentDuplicationError(DvcException):
|
||||
|
||||
def __init__(self, path):
|
||||
assert isinstance(path, str)
|
||||
super().__init__("file '{}' is specified more than once.".format(path))
|
||||
super().__init__(f"file '{path}' is specified more than once.")
|
||||
|
||||
|
||||
class MoveNotDataSourceError(DvcException):
|
||||
"""Thrown if attempted to move a file/directory that is not an output
|
||||
"""Thrown when trying to move a file/directory that is not an output
|
||||
in a data source stage.
|
||||
|
||||
Args:
|
||||
@@ -129,12 +136,8 @@ class DvcParserError(DvcException):
|
||||
class CyclicGraphError(DvcException):
|
||||
def __init__(self, stages):
|
||||
assert isinstance(stages, list)
|
||||
stages = "\n".join("\t- {}".format(stage.relpath) for stage in stages)
|
||||
msg = (
|
||||
"you've introduced a cycle in your pipeline that involves "
|
||||
"the following stages:"
|
||||
"\n"
|
||||
"{stages}".format(stages=stages)
|
||||
msg = "Pipeline has a cycle involving: {}.".format(
|
||||
", ".join(s.addressing for s in stages)
|
||||
)
|
||||
super().__init__(msg)
|
||||
|
||||
@@ -142,7 +145,7 @@ class CyclicGraphError(DvcException):
|
||||
class ConfirmRemoveError(DvcException):
|
||||
def __init__(self, path):
|
||||
super().__init__(
|
||||
"unable to remove '{}' without a confirmation from the user. Use "
|
||||
"unable to remove '{}' without a confirmation. Use "
|
||||
"`-f` to force.".format(path)
|
||||
)
|
||||
|
||||
@@ -154,33 +157,37 @@ class InitError(DvcException):
|
||||
class ReproductionError(DvcException):
|
||||
def __init__(self, dvc_file_name):
|
||||
self.path = dvc_file_name
|
||||
super().__init__("failed to reproduce '{}'".format(dvc_file_name))
|
||||
super().__init__(f"failed to reproduce '{dvc_file_name}'")
|
||||
|
||||
|
||||
class BadMetricError(DvcException):
|
||||
def __init__(self, paths):
|
||||
super().__init__(
|
||||
"the following metrics do not exist, "
|
||||
"are not metric files or are malformed: {paths}".format(
|
||||
paths=", ".join("'{}'".format(path) for path in paths)
|
||||
"are not metrics files or are malformed: {paths}".format(
|
||||
paths=", ".join(f"'{path}'" for path in paths)
|
||||
)
|
||||
)
|
||||
|
||||
|
||||
class NoMetricsError(DvcException):
|
||||
def __init__(self):
|
||||
pass
|
||||
|
||||
|
||||
class NoMetricsParsedError(NoMetricsError):
|
||||
def __init__(self, command):
|
||||
super().__init__(
|
||||
"no metric files in this repository. "
|
||||
"Use `dvc metrics add` to add a metric file to track."
|
||||
f"Could not parse {command} files. Use `-v` option to see more "
|
||||
"details."
|
||||
)
|
||||
|
||||
|
||||
class StageFileCorruptedError(DvcException):
|
||||
def __init__(self, path):
|
||||
path = relpath(path)
|
||||
class NoMetricsFoundError(NoMetricsError):
|
||||
def __init__(self, command, run_options):
|
||||
super().__init__(
|
||||
"unable to read DVC-file: {} "
|
||||
"YAML file structure is corrupted".format(path)
|
||||
f"No {command} files in this repository. "
|
||||
f"Use `{run_options}` options for "
|
||||
f"`dvc run` to mark stage outputs as {command}."
|
||||
)
|
||||
|
||||
|
||||
@@ -200,7 +207,7 @@ class OverlappingOutputPathsError(DvcException):
|
||||
|
||||
class CheckoutErrorSuggestGit(DvcException):
|
||||
def __init__(self, target):
|
||||
super().__init__("Did you mean `git checkout {}`?".format(target))
|
||||
super().__init__(f"Did you mean `git checkout {target}`?")
|
||||
|
||||
|
||||
class ETagMismatchError(DvcException):
|
||||
@@ -212,13 +219,19 @@ class ETagMismatchError(DvcException):
|
||||
|
||||
|
||||
class FileMissingError(DvcException):
|
||||
def __init__(self, path):
|
||||
def __init__(self, path, hint=None):
|
||||
self.path = path
|
||||
hint = "" if hint is None else f". {hint}"
|
||||
super().__init__(
|
||||
"Can't find '{}' neither locally nor on remote".format(path)
|
||||
f"Can't find '{path}' neither locally nor on remote{hint}"
|
||||
)
|
||||
|
||||
|
||||
class FileOwnershipError(DvcException):
|
||||
def __init__(self, path):
|
||||
super().__init__(f"file '{path}' not owned by user! ")
|
||||
|
||||
|
||||
class DvcIgnoreInCollectedDirError(DvcException):
|
||||
def __init__(self, ignore_dirname):
|
||||
super().__init__(
|
||||
@@ -241,18 +254,14 @@ class DownloadError(DvcException):
|
||||
def __init__(self, amount):
|
||||
self.amount = amount
|
||||
|
||||
super().__init__(
|
||||
"{amount} files failed to download".format(amount=amount)
|
||||
)
|
||||
super().__init__(f"{amount} files failed to download")
|
||||
|
||||
|
||||
class UploadError(DvcException):
|
||||
def __init__(self, amount):
|
||||
self.amount = amount
|
||||
|
||||
super().__init__(
|
||||
"{amount} files failed to upload".format(amount=amount)
|
||||
)
|
||||
super().__init__(f"{amount} files failed to upload")
|
||||
|
||||
|
||||
class CheckoutError(DvcException):
|
||||
@@ -261,8 +270,10 @@ class CheckoutError(DvcException):
|
||||
self.stats = stats
|
||||
targets = [str(t) for t in target_infos]
|
||||
m = (
|
||||
"Checkout failed for following targets:\n{}\nDid you "
|
||||
"forget to fetch?".format("\n".join(targets))
|
||||
"Checkout failed for following targets:\n{}\nIs your "
|
||||
"cache up to date?\n{}".format(
|
||||
"\n".join(targets), error_link("missing-files"),
|
||||
)
|
||||
)
|
||||
super().__init__(m)
|
||||
|
||||
@@ -274,7 +285,7 @@ class CollectCacheError(DvcException):
|
||||
class NoRemoteInExternalRepoError(DvcException):
|
||||
def __init__(self, url):
|
||||
super().__init__(
|
||||
"No DVC remote is specified in target repository '{}'.".format(url)
|
||||
f"No DVC remote is specified in target repository '{url}'."
|
||||
)
|
||||
|
||||
|
||||
@@ -289,7 +300,7 @@ class NoOutputInExternalRepoError(DvcException):
|
||||
|
||||
class HTTPError(DvcException):
|
||||
def __init__(self, code, reason):
|
||||
super().__init__("'{} {}'".format(code, reason))
|
||||
super().__init__(f"'{code} {reason}'")
|
||||
|
||||
|
||||
class PathMissingError(DvcException):
|
||||
@@ -297,19 +308,15 @@ class PathMissingError(DvcException):
|
||||
"The path '{}' does not exist in the target repository '{}'"
|
||||
" neither as a DVC output nor as a Git-tracked file."
|
||||
)
|
||||
default_msg_output_only = (
|
||||
default_msg_dvc_only = (
|
||||
"The path '{}' does not exist in the target repository '{}'"
|
||||
" as an DVC output."
|
||||
)
|
||||
|
||||
def __init__(self, path, repo, output_only=False):
|
||||
msg = (
|
||||
self.default_msg
|
||||
if not output_only
|
||||
else self.default_msg_output_only
|
||||
)
|
||||
def __init__(self, path, repo, dvc_only=False):
|
||||
msg = self.default_msg if not dvc_only else self.default_msg_dvc_only
|
||||
super().__init__(msg.format(path, repo))
|
||||
self.output_only = output_only
|
||||
self.dvc_only = dvc_only
|
||||
|
||||
|
||||
class RemoteCacheRequiredError(DvcException):
|
||||
@@ -327,5 +334,36 @@ class RemoteCacheRequiredError(DvcException):
|
||||
)
|
||||
|
||||
|
||||
class IsADirectoryError(DvcException):
|
||||
class IsADirectoryError(DvcException): # noqa,pylint:disable=redefined-builtin
|
||||
"""Raised when a file operation is requested on a directory."""
|
||||
|
||||
|
||||
class NoOutputOrStageError(DvcException):
|
||||
"""
|
||||
Raised when the target is neither an output nor a stage name in dvc.yaml
|
||||
"""
|
||||
|
||||
def __init__(self, target, file):
|
||||
super().__init__(
|
||||
f"'{target}' "
|
||||
f"does not exist as an output or a stage name in '{file}'"
|
||||
)
|
||||
|
||||
|
||||
class MergeError(DvcException):
|
||||
pass
|
||||
|
||||
|
||||
class CacheLinkError(DvcException):
|
||||
SUPPORT_LINK = "See {} for more information.".format(
|
||||
format_link(
|
||||
"https://dvc.org/doc/user-guide/troubleshooting#cache-types"
|
||||
)
|
||||
)
|
||||
|
||||
def __init__(self, path_infos):
|
||||
msg = "No possible cache link types for '{}'. {}".format(
|
||||
", ".join([str(path) for path in path_infos]), self.SUPPORT_LINK,
|
||||
)
|
||||
super().__init__(msg)
|
||||
self.path_infos = path_infos
|
||||
|
||||
+278
-149
@@ -1,59 +1,85 @@
|
||||
import logging
|
||||
import os
|
||||
import tempfile
|
||||
import threading
|
||||
from contextlib import contextmanager
|
||||
from distutils.dir_util import copy_tree
|
||||
import threading
|
||||
from typing import Dict, Iterable
|
||||
|
||||
from funcy import retry, suppress, wrap_with, cached_property
|
||||
from funcy import cached_property, reraise, retry, wrap_with
|
||||
|
||||
from dvc.path_info import PathInfo
|
||||
from dvc.compat import fspath
|
||||
from dvc.repo import Repo
|
||||
from dvc.cache import Cache
|
||||
from dvc.config import NoRemoteError, NotDvcRepoError
|
||||
from dvc.exceptions import NoRemoteInExternalRepoError, CheckoutError
|
||||
from dvc.exceptions import OutputNotFoundError, NoOutputInExternalRepoError
|
||||
from dvc.exceptions import FileMissingError, PathMissingError
|
||||
from dvc.utils.fs import remove, fs_copy, move
|
||||
from dvc.utils import tmp_fname
|
||||
from dvc.exceptions import (
|
||||
DvcException,
|
||||
FileMissingError,
|
||||
NoOutputInExternalRepoError,
|
||||
NoRemoteInExternalRepoError,
|
||||
OutputNotFoundError,
|
||||
PathMissingError,
|
||||
)
|
||||
from dvc.path_info import PathInfo
|
||||
from dvc.repo import Repo
|
||||
from dvc.scm.base import CloneError
|
||||
from dvc.scm.git import Git
|
||||
|
||||
from dvc.tree.local import LocalTree
|
||||
from dvc.tree.repo import RepoTree
|
||||
from dvc.utils import relpath
|
||||
from dvc.utils.fs import remove
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
class IsADVCRepoError(DvcException):
|
||||
"""Raised when it is not expected to be a dvc repo."""
|
||||
|
||||
|
||||
@contextmanager
|
||||
def external_repo(url, rev=None, for_write=False):
|
||||
def external_repo(url, rev=None, for_write=False, **kwargs):
|
||||
logger.debug("Creating external repo %s@%s", url, rev)
|
||||
path = _cached_clone(url, rev, for_write=for_write)
|
||||
try:
|
||||
repo = ExternalRepo(path, url)
|
||||
except NotDvcRepoError:
|
||||
repo = ExternalGitRepo(path, url)
|
||||
# Local HEAD points to the tip of whatever branch we first cloned from
|
||||
# (which may not be the default branch), use origin/HEAD here to get
|
||||
# the tip of the default branch
|
||||
rev = rev or "refs/remotes/origin/HEAD"
|
||||
|
||||
root_dir = path if for_write else os.path.realpath(path)
|
||||
conf = dict(
|
||||
root_dir=root_dir,
|
||||
url=url,
|
||||
scm=None if for_write else Git(root_dir),
|
||||
rev=None if for_write else rev,
|
||||
for_write=for_write,
|
||||
uninitialized=True,
|
||||
**kwargs,
|
||||
)
|
||||
repo = ExternalRepo(**conf)
|
||||
|
||||
try:
|
||||
yield repo
|
||||
except NoRemoteError:
|
||||
raise NoRemoteInExternalRepoError(url)
|
||||
except NoRemoteError as exc:
|
||||
raise NoRemoteInExternalRepoError(url) from exc
|
||||
except OutputNotFoundError as exc:
|
||||
if exc.repo is repo:
|
||||
raise NoOutputInExternalRepoError(exc.output, repo.root_dir, url)
|
||||
raise NoOutputInExternalRepoError(
|
||||
exc.output, repo.root_dir, url
|
||||
) from exc
|
||||
raise
|
||||
except FileMissingError as exc:
|
||||
raise PathMissingError(exc.path, url)
|
||||
raise PathMissingError(exc.path, url) from exc
|
||||
finally:
|
||||
repo.close()
|
||||
if for_write:
|
||||
_remove(path)
|
||||
|
||||
|
||||
CLONES = {}
|
||||
CACHE_DIRS = {}
|
||||
CLONES: Dict[str, str] = {}
|
||||
CACHE_DIRS: Dict[str, str] = {}
|
||||
|
||||
|
||||
def clean_repos():
|
||||
# Outside code should not see cache while we are removing
|
||||
paths = list(CLONES.values()) + list(CACHE_DIRS.values())
|
||||
paths = [path for path, _ in CLONES.values()] + list(CACHE_DIRS.values())
|
||||
CLONES.clear()
|
||||
CACHE_DIRS.clear()
|
||||
|
||||
@@ -62,141 +88,205 @@ def clean_repos():
|
||||
|
||||
|
||||
class ExternalRepo(Repo):
|
||||
def __init__(self, root_dir, url):
|
||||
super().__init__(root_dir)
|
||||
# pylint: disable=no-member
|
||||
|
||||
def __init__(
|
||||
self,
|
||||
root_dir,
|
||||
url,
|
||||
scm=None,
|
||||
rev=None,
|
||||
for_write=False,
|
||||
cache_dir=None,
|
||||
cache_types=None,
|
||||
uninitialized=False,
|
||||
**kwargs,
|
||||
):
|
||||
super().__init__(
|
||||
root_dir, scm=scm, rev=rev, uninitialized=uninitialized
|
||||
)
|
||||
|
||||
self.url = url
|
||||
self._set_cache_dir()
|
||||
self._fix_upstream()
|
||||
self.for_write = for_write
|
||||
self.cache_dir = cache_dir or self._get_cache_dir()
|
||||
self.cache_types = cache_types
|
||||
|
||||
def pull_to(self, path, to_info):
|
||||
"""
|
||||
Pull the corresponding file or directory specified by `path` and
|
||||
checkout it into `to_info`.
|
||||
self._setup_cache(self)
|
||||
self._fix_upstream(self)
|
||||
self.tree_confs = kwargs
|
||||
|
||||
It works with files tracked by Git and DVC, and also local files
|
||||
outside the repository.
|
||||
def __str__(self):
|
||||
return self.url
|
||||
|
||||
@cached_property
|
||||
def repo_tree(self):
|
||||
return self._get_tree_for(
|
||||
self, subrepos=not self.for_write, repo_factory=self.make_repo
|
||||
)
|
||||
|
||||
def get_rev(self):
|
||||
assert self.scm
|
||||
if isinstance(self.tree, LocalTree):
|
||||
return self.scm.get_rev()
|
||||
return self.tree.rev
|
||||
|
||||
def _fetch_to_cache(self, path_info, repo, callback, **kwargs):
|
||||
# don't support subrepo traversal as it might fail due to difference
|
||||
# in remotes
|
||||
tree = self._get_tree_for(repo)
|
||||
cache = repo.cache.local
|
||||
|
||||
hash_info = tree.get_hash(
|
||||
path_info, download_callback=callback, **kwargs
|
||||
)
|
||||
cache.save(
|
||||
path_info,
|
||||
tree,
|
||||
hash_info,
|
||||
save_link=False,
|
||||
download_callback=callback,
|
||||
)
|
||||
return hash_info
|
||||
|
||||
def fetch_external(self, paths: Iterable, **kwargs):
|
||||
"""Fetch specified external repo paths into cache.
|
||||
|
||||
Returns 3-tuple in the form
|
||||
(downloaded, failed, list(cache_infos))
|
||||
where cache_infos can be used as checkout targets for the
|
||||
fetched paths.
|
||||
"""
|
||||
out = None
|
||||
download_results = []
|
||||
failed = 0
|
||||
root = PathInfo(self.root_dir)
|
||||
|
||||
paths = [root / path for path in paths]
|
||||
|
||||
def download_update(result):
|
||||
download_results.append(result)
|
||||
|
||||
hash_infos = []
|
||||
for path in paths:
|
||||
with reraise(FileNotFoundError, PathMissingError(path, self.url)):
|
||||
metadata = self.repo_tree.metadata(path)
|
||||
|
||||
self._check_repo(path, metadata.repo)
|
||||
repo = metadata.repo
|
||||
hash_info = self._fetch_to_cache(
|
||||
path, repo, download_update, **kwargs
|
||||
)
|
||||
hash_infos.append(hash_info)
|
||||
|
||||
return sum(download_results), failed, hash_infos
|
||||
|
||||
def _check_repo(self, path_info, repo):
|
||||
if not repo:
|
||||
return
|
||||
|
||||
repo_path = PathInfo(repo.root_dir)
|
||||
if path_info == repo_path and isinstance(repo, Repo):
|
||||
message = "Cannot fetch a complete DVC repository"
|
||||
if repo.root_dir != self.root_dir:
|
||||
rel = relpath(repo.root_dir, self.root_dir)
|
||||
message += f" '{rel}'"
|
||||
raise IsADVCRepoError(message)
|
||||
|
||||
def get_external(self, path, dest):
|
||||
"""Convenience wrapper for fetch_external and checkout."""
|
||||
path_info = PathInfo(self.root_dir) / path
|
||||
with reraise(FileNotFoundError, PathMissingError(path, self.url)):
|
||||
metadata = self.repo_tree.metadata(path_info)
|
||||
|
||||
with suppress(OutputNotFoundError):
|
||||
(out,) = self.find_outs_by_path(fspath(path_info), strict=False)
|
||||
self._check_repo(path_info, metadata.repo)
|
||||
if metadata.output_exists:
|
||||
repo = metadata.repo
|
||||
cache = repo.cache.local
|
||||
# fetch DVC and git files to tmpdir cache, then checkout
|
||||
save_info = self._fetch_to_cache(path_info, repo, None)
|
||||
cache.checkout(PathInfo(dest), save_info)
|
||||
else:
|
||||
# git-only folder, just copy files directly to dest
|
||||
tree = self._get_tree_for(metadata.repo) # ignore subrepos
|
||||
tree.copytree(path_info, dest)
|
||||
|
||||
try:
|
||||
if out and out.use_cache:
|
||||
self._pull_cached(out, path_info, to_info)
|
||||
return
|
||||
def _get_tree_for(self, repo, **kwargs):
|
||||
"""
|
||||
Provides a combined tree of a single repo with dvc + git/local tree.
|
||||
"""
|
||||
kw = {**self.tree_confs, **kwargs}
|
||||
if "fetch" not in kw:
|
||||
kw["fetch"] = True
|
||||
return RepoTree(repo, **kw)
|
||||
|
||||
# Check if it is handled by Git (it can't have an absolute path)
|
||||
if os.path.isabs(path):
|
||||
raise FileNotFoundError
|
||||
def get_checksum(self, path):
|
||||
path_info = PathInfo(self.root_dir) / path
|
||||
with reraise(FileNotFoundError, PathMissingError(path, self.url)):
|
||||
metadata = self.repo_tree.metadata(path_info)
|
||||
|
||||
fs_copy(fspath(path_info), fspath(to_info))
|
||||
except FileNotFoundError:
|
||||
raise PathMissingError(path, self.url)
|
||||
# skip subrepos to check for
|
||||
tree = self._get_tree_for(metadata.repo)
|
||||
return tree.get_hash(path_info)
|
||||
|
||||
def _pull_cached(self, out, path_info, dest):
|
||||
with self.state:
|
||||
tmp = PathInfo(tmp_fname(dest))
|
||||
src = tmp / path_info.relative_to(out.path_info)
|
||||
|
||||
out.path_info = tmp
|
||||
|
||||
# Only pull unless all needed cache is present
|
||||
if out.changed_cache(filter_info=src):
|
||||
self.cloud.pull(out.get_used_cache(filter_info=src))
|
||||
|
||||
try:
|
||||
out.checkout(filter_info=src)
|
||||
except CheckoutError:
|
||||
raise FileNotFoundError
|
||||
|
||||
move(src, dest)
|
||||
remove(tmp)
|
||||
|
||||
@wrap_with(threading.Lock())
|
||||
def _set_cache_dir(self):
|
||||
try:
|
||||
cache_dir = CACHE_DIRS[self.url]
|
||||
except KeyError:
|
||||
cache_dir = CACHE_DIRS[self.url] = tempfile.mkdtemp("dvc-cache")
|
||||
|
||||
self.cache.local.cache_dir = cache_dir
|
||||
|
||||
def _fix_upstream(self):
|
||||
if not os.path.isdir(self.url):
|
||||
return
|
||||
|
||||
try:
|
||||
src_repo = Repo(self.url)
|
||||
except NotDvcRepoError:
|
||||
# If ExternalRepo does not throw NotDvcRepoError and Repo does,
|
||||
# the self.url might be a bare git repo.
|
||||
# NOTE: This will fail to resolve remote with relative path,
|
||||
# same as if it was a remote DVC repo.
|
||||
return
|
||||
|
||||
try:
|
||||
remote_name = self.config["core"].get("remote")
|
||||
if remote_name:
|
||||
self._fix_local_remote(src_repo, remote_name)
|
||||
else:
|
||||
self._add_upstream(src_repo)
|
||||
finally:
|
||||
src_repo.close()
|
||||
|
||||
def _fix_local_remote(self, src_repo, remote_name):
|
||||
@staticmethod
|
||||
def _fix_local_remote(orig_repo, src_repo, remote_name):
|
||||
# If a remote URL is relative to the source repo,
|
||||
# it will have changed upon config load and made
|
||||
# relative to this new repo. Restore the old one here.
|
||||
new_remote = self.config["remote"][remote_name]
|
||||
new_remote = orig_repo.config["remote"][remote_name]
|
||||
old_remote = src_repo.config["remote"][remote_name]
|
||||
if new_remote["url"] != old_remote["url"]:
|
||||
new_remote["url"] = old_remote["url"]
|
||||
|
||||
def _add_upstream(self, src_repo):
|
||||
@staticmethod
|
||||
def _add_upstream(orig_repo, src_repo):
|
||||
# Fill the empty upstream entry with a new remote pointing to the
|
||||
# original repo's cache location.
|
||||
cache_dir = src_repo.cache.local.cache_dir
|
||||
self.config["remote"]["auto-generated-upstream"] = {"url": cache_dir}
|
||||
self.config["core"]["remote"] = "auto-generated-upstream"
|
||||
orig_repo.config["remote"]["auto-generated-upstream"] = {
|
||||
"url": cache_dir
|
||||
}
|
||||
orig_repo.config["core"]["remote"] = "auto-generated-upstream"
|
||||
|
||||
def make_repo(self, path):
|
||||
repo = Repo(path, scm=self.scm, rev=self.get_rev())
|
||||
|
||||
class ExternalGitRepo:
|
||||
def __init__(self, root_dir, url):
|
||||
self.root_dir = root_dir
|
||||
self.url = url
|
||||
self._setup_cache(repo)
|
||||
self._fix_upstream(repo)
|
||||
|
||||
@cached_property
|
||||
def scm(self):
|
||||
return Git(self.root_dir)
|
||||
return repo
|
||||
|
||||
def close(self):
|
||||
if "scm" in self.__dict__:
|
||||
self.scm.close()
|
||||
def _setup_cache(self, repo):
|
||||
repo.config["cache"]["dir"] = self.cache_dir
|
||||
repo.cache = Cache(repo)
|
||||
if self.cache_types:
|
||||
repo.cache.local.cache_types = self.cache_types
|
||||
|
||||
def find_out_by_relpath(self, path):
|
||||
raise OutputNotFoundError(path, self)
|
||||
def _fix_upstream(self, repo):
|
||||
if not os.path.isdir(self.url):
|
||||
return
|
||||
|
||||
def pull_to(self, path, to_info):
|
||||
try:
|
||||
# Git handled files can't have absolute path
|
||||
if os.path.isabs(path):
|
||||
raise FileNotFoundError
|
||||
rel_path = os.path.relpath(repo.root_dir, self.root_dir)
|
||||
src_repo = Repo(PathInfo(self.url) / rel_path)
|
||||
except NotDvcRepoError:
|
||||
return
|
||||
|
||||
fs_copy(os.path.join(self.root_dir, path), fspath(to_info))
|
||||
except FileNotFoundError:
|
||||
raise PathMissingError(path, self.url)
|
||||
|
||||
@contextmanager
|
||||
def open_by_relpath(self, path, mode="r", encoding=None, **kwargs):
|
||||
"""Opens a specified resource as a file object."""
|
||||
try:
|
||||
abs_path = os.path.join(self.root_dir, path)
|
||||
with open(abs_path, mode, encoding=encoding) as fd:
|
||||
yield fd
|
||||
except FileNotFoundError:
|
||||
raise PathMissingError(path, self.url)
|
||||
remote_name = repo.config["core"].get("remote")
|
||||
if remote_name:
|
||||
self._fix_local_remote(repo, src_repo, remote_name)
|
||||
else:
|
||||
self._add_upstream(repo, src_repo)
|
||||
finally:
|
||||
src_repo.close()
|
||||
|
||||
@wrap_with(threading.Lock())
|
||||
def _get_cache_dir(self):
|
||||
try:
|
||||
cache_dir = CACHE_DIRS[self.url]
|
||||
except KeyError:
|
||||
cache_dir = CACHE_DIRS[self.url] = tempfile.mkdtemp("dvc-cache")
|
||||
return cache_dir
|
||||
|
||||
|
||||
def _cached_clone(url, rev, for_write=False):
|
||||
@@ -206,14 +296,12 @@ def _cached_clone(url, rev, for_write=False):
|
||||
revision checked out. If for_write is set prevents reusing this dir via
|
||||
cache.
|
||||
"""
|
||||
if not for_write and Git.is_sha(rev) and (url, rev) in CLONES:
|
||||
return CLONES[url, rev]
|
||||
# even if we have already cloned this repo, we may need to
|
||||
# fetch/fast-forward to get specified rev
|
||||
clone_path, shallow = _clone_default_branch(url, rev, for_write=for_write)
|
||||
|
||||
clone_path = _clone_default_branch(url, rev)
|
||||
rev_sha = Git(clone_path).resolve_rev(rev or "HEAD")
|
||||
|
||||
if not for_write and (url, rev_sha) in CLONES:
|
||||
return CLONES[url, rev_sha]
|
||||
if not for_write and (url) in CLONES:
|
||||
return CLONES[url][0]
|
||||
|
||||
# Copy to a new dir to keep the clone clean
|
||||
repo_path = tempfile.mkdtemp("dvc-erepo")
|
||||
@@ -221,21 +309,20 @@ def _cached_clone(url, rev, for_write=False):
|
||||
copy_tree(clone_path, repo_path)
|
||||
|
||||
# Check out the specified revision
|
||||
if rev is not None:
|
||||
if for_write:
|
||||
_git_checkout(repo_path, rev)
|
||||
|
||||
if not for_write:
|
||||
CLONES[url, rev_sha] = repo_path
|
||||
else:
|
||||
CLONES[url] = (repo_path, shallow)
|
||||
return repo_path
|
||||
|
||||
|
||||
@wrap_with(threading.Lock())
|
||||
def _clone_default_branch(url, rev):
|
||||
def _clone_default_branch(url, rev, for_write=False):
|
||||
"""Get or create a clean clone of the url.
|
||||
|
||||
The cloned is reactualized with git pull unless rev is a known sha.
|
||||
"""
|
||||
clone_path = CLONES.get(url)
|
||||
clone_path, shallow = CLONES.get(url, (None, False))
|
||||
|
||||
git = None
|
||||
try:
|
||||
@@ -243,18 +330,55 @@ def _clone_default_branch(url, rev):
|
||||
git = Git(clone_path)
|
||||
# Do not pull for known shas, branches and tags might move
|
||||
if not Git.is_sha(rev) or not git.has_rev(rev):
|
||||
logger.debug("erepo: git pull %s", url)
|
||||
git.pull()
|
||||
if shallow:
|
||||
# If we are missing a rev in a shallow clone, fallback to
|
||||
# a full (unshallowed) clone. Since fetching specific rev
|
||||
# SHAs is only available in certain git versions, if we
|
||||
# have need to reference multiple specific revs for a
|
||||
# given repo URL it is easier/safer for us to work with
|
||||
# full clones in this case.
|
||||
logger.debug("erepo: unshallowing clone for '%s'", url)
|
||||
_unshallow(git)
|
||||
shallow = False
|
||||
CLONES[url] = (clone_path, shallow)
|
||||
else:
|
||||
logger.debug("erepo: git pull '%s'", url)
|
||||
git.pull()
|
||||
else:
|
||||
logger.debug("erepo: git clone %s to a temporary dir", url)
|
||||
logger.debug("erepo: git clone '%s' to a temporary dir", url)
|
||||
clone_path = tempfile.mkdtemp("dvc-clone")
|
||||
git = Git.clone(url, clone_path)
|
||||
CLONES[url] = clone_path
|
||||
if not for_write and rev and not Git.is_sha(rev):
|
||||
# If rev is a tag or branch name try shallow clone first
|
||||
try:
|
||||
git = Git.clone(url, clone_path, shallow_branch=rev)
|
||||
shallow = True
|
||||
logger.debug(
|
||||
"erepo: using shallow clone for branch '%s'", rev
|
||||
)
|
||||
except CloneError:
|
||||
pass
|
||||
if not git:
|
||||
git = Git.clone(url, clone_path)
|
||||
shallow = False
|
||||
CLONES[url] = (clone_path, shallow)
|
||||
finally:
|
||||
if git:
|
||||
git.close()
|
||||
|
||||
return clone_path
|
||||
return clone_path, shallow
|
||||
|
||||
|
||||
def _unshallow(git):
|
||||
if git.repo.head.is_detached:
|
||||
# If this is a detached head (i.e. we shallow cloned a tag) switch to
|
||||
# the default branch
|
||||
origin_refs = git.repo.remotes["origin"].refs
|
||||
ref = origin_refs["HEAD"].reference
|
||||
branch_name = ref.name.split("/")[-1]
|
||||
branch = git.repo.create_head(branch_name, ref)
|
||||
branch.set_tracking_branch(ref)
|
||||
branch.checkout()
|
||||
git.pull(unshallow=True)
|
||||
|
||||
|
||||
def _git_checkout(repo_path, rev):
|
||||
@@ -270,6 +394,11 @@ def _remove(path):
|
||||
if os.name == "nt":
|
||||
# git.exe may hang for a while not permitting to remove temp dir
|
||||
os_retry = retry(5, errors=OSError, timeout=0.1)
|
||||
os_retry(remove)(path)
|
||||
try:
|
||||
os_retry(remove)(path)
|
||||
except PermissionError:
|
||||
logger.warning(
|
||||
"Failed to remove '%s'", relpath(path), exc_info=True
|
||||
)
|
||||
else:
|
||||
remove(path)
|
||||
|
||||
@@ -0,0 +1,52 @@
|
||||
from collections import OrderedDict
|
||||
from dataclasses import dataclass, field
|
||||
from typing import Dict, Optional
|
||||
|
||||
HASH_DIR_SUFFIX = ".dir"
|
||||
|
||||
DirInfo = Dict[str, str]
|
||||
|
||||
|
||||
@dataclass
|
||||
class HashInfo:
|
||||
PARAM_SIZE = "size"
|
||||
PARAM_NFILES = "nfiles"
|
||||
|
||||
name: Optional[str]
|
||||
value: Optional[str]
|
||||
dir_info: Optional[DirInfo] = field(default=None, compare=False)
|
||||
size: Optional[int] = field(default=None, compare=False)
|
||||
nfiles: Optional[int] = field(default=None, compare=False)
|
||||
|
||||
def __bool__(self):
|
||||
return bool(self.value)
|
||||
|
||||
@classmethod
|
||||
def from_dict(cls, d):
|
||||
_d = d.copy() if d else {}
|
||||
size = _d.pop(cls.PARAM_SIZE, None)
|
||||
nfiles = _d.pop(cls.PARAM_NFILES, None)
|
||||
|
||||
if not _d:
|
||||
return cls(None, None)
|
||||
|
||||
((name, value),) = _d.items()
|
||||
return cls(name, value, size=size, nfiles=nfiles)
|
||||
|
||||
def to_dict(self):
|
||||
ret = OrderedDict()
|
||||
if not self:
|
||||
return ret
|
||||
|
||||
ret[self.name] = self.value
|
||||
if self.size is not None:
|
||||
ret[self.PARAM_SIZE] = self.size
|
||||
if self.nfiles is not None:
|
||||
ret[self.PARAM_NFILES] = self.nfiles
|
||||
return ret
|
||||
|
||||
@property
|
||||
def isdir(self):
|
||||
if not self:
|
||||
return False
|
||||
return self.value.endswith(HASH_DIR_SUFFIX)
|
||||
+293
-77
@@ -1,17 +1,22 @@
|
||||
import logging
|
||||
import os
|
||||
import re
|
||||
from collections import namedtuple
|
||||
from itertools import groupby, takewhile
|
||||
|
||||
from funcy import cached_property
|
||||
from pathspec import PathSpec
|
||||
from pathspec.patterns import GitWildMatchPattern
|
||||
from pathspec.util import normalize_file
|
||||
|
||||
from dvc.scm.tree import BaseTree
|
||||
from dvc.path_info import PathInfo
|
||||
from dvc.pathspec_math import PatternInfo, merge_patterns
|
||||
from dvc.system import System
|
||||
from dvc.utils import relpath
|
||||
from dvc.utils.collections import PathStringTrie
|
||||
|
||||
logger = logging.getLogger(__name__)
|
||||
|
||||
|
||||
class DvcIgnore(object):
|
||||
class DvcIgnore:
|
||||
DVCIGNORE_FILE = ".dvcignore"
|
||||
|
||||
def __call__(self, root, dirs, files):
|
||||
@@ -19,124 +24,335 @@ class DvcIgnore(object):
|
||||
|
||||
|
||||
class DvcIgnorePatterns(DvcIgnore):
|
||||
def __init__(self, ignore_file_path, tree):
|
||||
def __init__(self, pattern_list, dirname):
|
||||
if pattern_list:
|
||||
if isinstance(pattern_list[0], str):
|
||||
pattern_list = [
|
||||
PatternInfo(pattern, "") for pattern in pattern_list
|
||||
]
|
||||
|
||||
self.pattern_list = pattern_list
|
||||
self.dirname = dirname
|
||||
self.prefix = self.dirname + os.sep
|
||||
|
||||
self.regex_pattern_list = [
|
||||
GitWildMatchPattern.pattern_to_regex(pattern_info.patterns)
|
||||
for pattern_info in pattern_list
|
||||
]
|
||||
|
||||
self.ignore_spec = [
|
||||
(ignore, re.compile("|".join(item[0] for item in group)))
|
||||
for ignore, group in groupby(
|
||||
self.regex_pattern_list, lambda x: x[1]
|
||||
)
|
||||
if ignore is not None
|
||||
]
|
||||
|
||||
@classmethod
|
||||
def from_files(cls, ignore_file_path, tree):
|
||||
assert os.path.isabs(ignore_file_path)
|
||||
|
||||
self.ignore_file_path = ignore_file_path
|
||||
self.dirname = os.path.normpath(os.path.dirname(ignore_file_path))
|
||||
|
||||
dirname = os.path.normpath(os.path.dirname(ignore_file_path))
|
||||
ignore_file_rel_path = os.path.relpath(
|
||||
ignore_file_path, tree.tree_root
|
||||
)
|
||||
with tree.open(ignore_file_path, encoding="utf-8") as fobj:
|
||||
self.ignore_spec = PathSpec.from_lines(GitWildMatchPattern, fobj)
|
||||
path_spec_lines = [
|
||||
PatternInfo(
|
||||
line,
|
||||
"{}:{}:{}".format(ignore_file_rel_path, line_no + 1, line),
|
||||
)
|
||||
for line_no, line in enumerate(
|
||||
map(str.strip, fobj.readlines())
|
||||
)
|
||||
if line and not (line.strip().startswith("#"))
|
||||
]
|
||||
|
||||
return cls(path_spec_lines, dirname)
|
||||
|
||||
def __call__(self, root, dirs, files):
|
||||
files = [f for f in files if not self.matches(root, f)]
|
||||
dirs = [d for d in dirs if not self.matches(root, d)]
|
||||
dirs = [d for d in dirs if not self.matches(root, d, True)]
|
||||
|
||||
return dirs, files
|
||||
|
||||
def matches(self, dirname, basename):
|
||||
abs_path = os.path.join(dirname, basename)
|
||||
rel_path = relpath(abs_path, self.dirname)
|
||||
|
||||
if os.pardir + os.sep in rel_path:
|
||||
def _get_normalize_path(self, dirname, basename):
|
||||
# NOTE: `relpath` is too slow, so we have to assume that both
|
||||
# `dirname` and `self.dirname` are relative or absolute together.
|
||||
if dirname == self.dirname:
|
||||
path = basename
|
||||
elif dirname.startswith(self.prefix):
|
||||
rel = dirname[len(self.prefix) :]
|
||||
# NOTE: `os.path.join` is ~x5.5 slower
|
||||
path = f"{rel}{os.sep}{basename}"
|
||||
else:
|
||||
return False
|
||||
return self.ignore_spec.match_file(rel_path)
|
||||
|
||||
if not System.is_unix():
|
||||
path = normalize_file(path)
|
||||
return path
|
||||
|
||||
def matches(self, dirname, basename, is_dir=False):
|
||||
path = self._get_normalize_path(dirname, basename)
|
||||
if not path:
|
||||
return False
|
||||
return self.ignore(path, is_dir)
|
||||
|
||||
def ignore(self, path, is_dir):
|
||||
result = False
|
||||
if is_dir:
|
||||
path_dir = f"{path}/"
|
||||
for ignore, pattern in self.ignore_spec:
|
||||
if pattern.match(path) or pattern.match(path_dir):
|
||||
result = ignore
|
||||
else:
|
||||
for ignore, pattern in self.ignore_spec:
|
||||
if pattern.match(path):
|
||||
result = ignore
|
||||
return result
|
||||
|
||||
def match_details(self, dirname, basename, is_dir=False):
|
||||
path = self._get_normalize_path(dirname, basename)
|
||||
if not path:
|
||||
return False
|
||||
return self._ignore_details(path, is_dir)
|
||||
|
||||
def _ignore_details(self, path, is_dir):
|
||||
result = []
|
||||
for ignore, pattern in zip(self.regex_pattern_list, self.pattern_list):
|
||||
regex = re.compile(ignore[0])
|
||||
# skip system pattern
|
||||
if not pattern.file_info:
|
||||
continue
|
||||
if is_dir:
|
||||
path_dir = f"{path}/"
|
||||
if regex.match(path) or regex.match(path_dir):
|
||||
result.append(pattern.file_info)
|
||||
else:
|
||||
if regex.match(path):
|
||||
result.append(pattern.file_info)
|
||||
return result
|
||||
|
||||
def __hash__(self):
|
||||
return hash(self.ignore_file_path)
|
||||
return hash(self.dirname + ":" + str(self.pattern_list))
|
||||
|
||||
def __eq__(self, other):
|
||||
if not isinstance(other, DvcIgnorePatterns):
|
||||
return NotImplemented
|
||||
return (self.dirname == other.dirname) & (
|
||||
[pattern.patterns for pattern in self.pattern_list]
|
||||
== [pattern.patterns for pattern in other.pattern_list]
|
||||
)
|
||||
|
||||
return self.ignore_file_path == other.ignore_file_path
|
||||
def __bool__(self):
|
||||
return bool(self.pattern_list)
|
||||
|
||||
|
||||
class DvcIgnoreDirs(DvcIgnore):
|
||||
def __init__(self, basenames):
|
||||
self.basenames = set(basenames)
|
||||
CheckIgnoreResult = namedtuple(
|
||||
"CheckIgnoreResult", ["file", "match", "patterns"]
|
||||
)
|
||||
|
||||
def __call__(self, root, dirs, files):
|
||||
dirs = [d for d in dirs if d not in self.basenames]
|
||||
|
||||
def _no_match(path):
|
||||
return CheckIgnoreResult(path, False, ["::"])
|
||||
|
||||
|
||||
class DvcIgnoreFilterNoop:
|
||||
def __init__(self, tree, root_dir):
|
||||
pass
|
||||
|
||||
def __call__(self, root, dirs, files, **kwargs):
|
||||
return dirs, files
|
||||
|
||||
def __hash__(self):
|
||||
return hash(tuple(self.basenames))
|
||||
def is_ignored_dir(self, _):
|
||||
return False
|
||||
|
||||
def __eq__(self, other):
|
||||
if not isinstance(other, DvcIgnoreDirs):
|
||||
return NotImplemented
|
||||
def is_ignored_file(self, _):
|
||||
return False
|
||||
|
||||
return self.basenames == other.basenames
|
||||
def check_ignore(self, path):
|
||||
return _no_match(path)
|
||||
|
||||
def is_ignored(self, _):
|
||||
return False
|
||||
|
||||
|
||||
class DvcIgnoreRepo(DvcIgnore):
|
||||
def __call__(self, root, dirs, files):
|
||||
def is_dvc_repo(directory):
|
||||
from dvc.repo import Repo
|
||||
class DvcIgnoreFilter:
|
||||
@staticmethod
|
||||
def _is_dvc_repo(root, directory):
|
||||
from dvc.repo import Repo
|
||||
|
||||
return os.path.isdir(os.path.join(directory, Repo.DVC_DIR))
|
||||
return os.path.isdir(os.path.join(root, directory, Repo.DVC_DIR))
|
||||
|
||||
dirs = [d for d in dirs if not is_dvc_repo(d)]
|
||||
def __init__(self, tree, root_dir):
|
||||
from dvc.repo import Repo
|
||||
|
||||
return dirs, files
|
||||
default_ignore_patterns = [".hg/", ".git/", "{}/".format(Repo.DVC_DIR)]
|
||||
|
||||
|
||||
class DvcIgnoreFilter(object):
|
||||
def __init__(self, tree):
|
||||
self.tree = tree
|
||||
self.ignores = {
|
||||
DvcIgnoreDirs([".git", ".hg", ".dvc"]),
|
||||
DvcIgnoreRepo(),
|
||||
}
|
||||
for root, dirs, files in self.tree.walk(self.tree.tree_root):
|
||||
self._update(root)
|
||||
dirs[:], files[:] = self(root, dirs, files)
|
||||
self.root_dir = root_dir
|
||||
self.ignores_trie_tree = PathStringTrie()
|
||||
self.ignores_trie_tree[root_dir] = DvcIgnorePatterns(
|
||||
default_ignore_patterns, root_dir
|
||||
)
|
||||
self._ignored_subrepos = PathStringTrie()
|
||||
self._update(self.root_dir)
|
||||
|
||||
def _update(self, dirname):
|
||||
old_pattern = self.ignores_trie_tree.longest_prefix(dirname).value
|
||||
matches = old_pattern.matches(dirname, DvcIgnore.DVCIGNORE_FILE, False)
|
||||
|
||||
ignore_file_path = os.path.join(dirname, DvcIgnore.DVCIGNORE_FILE)
|
||||
if self.tree.exists(ignore_file_path):
|
||||
self.ignores.add(DvcIgnorePatterns(ignore_file_path, self.tree))
|
||||
if not matches and self.tree.exists(
|
||||
ignore_file_path, use_dvcignore=False
|
||||
):
|
||||
new_pattern = DvcIgnorePatterns.from_files(
|
||||
ignore_file_path, self.tree
|
||||
)
|
||||
if old_pattern:
|
||||
self.ignores_trie_tree[dirname] = DvcIgnorePatterns(
|
||||
*merge_patterns(
|
||||
old_pattern.pattern_list,
|
||||
old_pattern.dirname,
|
||||
new_pattern.pattern_list,
|
||||
new_pattern.dirname,
|
||||
)
|
||||
)
|
||||
else:
|
||||
self.ignores_trie_tree[dirname] = new_pattern
|
||||
elif old_pattern:
|
||||
self.ignores_trie_tree[dirname] = old_pattern
|
||||
|
||||
def __call__(self, root, dirs, files):
|
||||
for ignore in self.ignores:
|
||||
dirs, files = ignore(root, dirs, files)
|
||||
# NOTE: using `walk` + `break` because tree doesn't have `listdir()`
|
||||
for root, dirs, _ in self.tree.walk(dirname, use_dvcignore=False):
|
||||
self._update_sub_repo(root, dirs)
|
||||
break
|
||||
|
||||
def _update_sub_repo(self, root, dirs):
|
||||
for d in dirs:
|
||||
if self._is_dvc_repo(root, d):
|
||||
self._ignored_subrepos[root] = self._ignored_subrepos.get(
|
||||
root, set()
|
||||
) | {d}
|
||||
pattern_info = PatternInfo(
|
||||
f"/{d}/", "in sub_repo:{}".format(d)
|
||||
)
|
||||
new_pattern = DvcIgnorePatterns([pattern_info], root)
|
||||
old_pattern = self.ignores_trie_tree.longest_prefix(root).value
|
||||
if old_pattern:
|
||||
self.ignores_trie_tree[root] = DvcIgnorePatterns(
|
||||
*merge_patterns(
|
||||
old_pattern.pattern_list,
|
||||
old_pattern.dirname,
|
||||
new_pattern.pattern_list,
|
||||
new_pattern.dirname,
|
||||
)
|
||||
)
|
||||
else:
|
||||
self.ignores_trie_tree[root] = new_pattern
|
||||
|
||||
def __call__(self, root, dirs, files, ignore_subrepos=True):
|
||||
ignore_pattern = self._get_trie_pattern(root)
|
||||
if ignore_pattern:
|
||||
dirs, files = ignore_pattern(root, dirs, files)
|
||||
if not ignore_subrepos:
|
||||
dirs.extend(self._ignored_subrepos.get(root, []))
|
||||
return dirs, files
|
||||
|
||||
def _get_trie_pattern(self, dirname):
|
||||
ignore_pattern = self.ignores_trie_tree.get(dirname)
|
||||
if ignore_pattern:
|
||||
return ignore_pattern
|
||||
|
||||
class CleanTree(BaseTree):
|
||||
def __init__(self, tree):
|
||||
self.tree = tree
|
||||
prefix = self.ignores_trie_tree.longest_prefix(dirname).key
|
||||
if not prefix:
|
||||
# outside of the repo
|
||||
return None
|
||||
|
||||
@cached_property
|
||||
def dvcignore(self):
|
||||
return DvcIgnoreFilter(self.tree)
|
||||
dirs = list(
|
||||
takewhile(
|
||||
lambda path: path != prefix,
|
||||
(parent.fspath for parent in PathInfo(dirname).parents),
|
||||
)
|
||||
)
|
||||
dirs.reverse()
|
||||
dirs.append(dirname)
|
||||
|
||||
@property
|
||||
def tree_root(self):
|
||||
return self.tree.tree_root
|
||||
for parent in dirs:
|
||||
self._update(parent)
|
||||
|
||||
def open(self, path, mode="r", encoding="utf-8"):
|
||||
return self.tree.open(path, mode, encoding)
|
||||
return self.ignores_trie_tree.get(dirname)
|
||||
|
||||
def exists(self, path):
|
||||
return self.tree.exists(path)
|
||||
def _is_ignored(self, path, is_dir=False):
|
||||
if self._outside_repo(path):
|
||||
return False
|
||||
dirname, basename = os.path.split(os.path.normpath(path))
|
||||
ignore_pattern = self._get_trie_pattern(dirname)
|
||||
if ignore_pattern:
|
||||
return ignore_pattern.matches(dirname, basename, is_dir)
|
||||
else:
|
||||
return False
|
||||
|
||||
def isdir(self, path):
|
||||
return self.tree.isdir(path)
|
||||
def _is_subrepo(self, path):
|
||||
dirname, basename = os.path.split(os.path.normpath(path))
|
||||
return basename in self._ignored_subrepos.get(dirname, set())
|
||||
|
||||
def isfile(self, path):
|
||||
return self.tree.isfile(path)
|
||||
def is_ignored_dir(self, path, ignore_subrepos=True):
|
||||
path = os.path.abspath(path)
|
||||
if not ignore_subrepos:
|
||||
return not self._is_subrepo(path)
|
||||
if path == self.root_dir:
|
||||
return False
|
||||
|
||||
def walk(self, top, topdown=True):
|
||||
for root, dirs, files in self.tree.walk(top, topdown):
|
||||
dirs[:], files[:] = self.dvcignore(root, dirs, files)
|
||||
return self._is_ignored(path, True)
|
||||
|
||||
yield root, dirs, files
|
||||
def is_ignored_file(self, path):
|
||||
path = os.path.abspath(path)
|
||||
return self._is_ignored(path, False)
|
||||
|
||||
def walk_files(self, top):
|
||||
for root, _, files in self.walk(top):
|
||||
for file in files:
|
||||
yield os.path.join(root, file)
|
||||
def _outside_repo(self, path):
|
||||
path = PathInfo(path)
|
||||
|
||||
# paths outside of the repo should be ignored
|
||||
path = relpath(path, self.root_dir)
|
||||
if path.startswith("..") or (
|
||||
os.name == "nt"
|
||||
and not os.path.commonprefix(
|
||||
[os.path.abspath(path), self.root_dir]
|
||||
)
|
||||
):
|
||||
return True
|
||||
return False
|
||||
|
||||
def check_ignore(self, target):
|
||||
full_target = os.path.abspath(target)
|
||||
if not self._outside_repo(full_target):
|
||||
dirname, basename = os.path.split(os.path.normpath(full_target))
|
||||
pattern = self._get_trie_pattern(dirname)
|
||||
if pattern:
|
||||
matches = pattern.match_details(
|
||||
dirname, basename, os.path.isdir(full_target)
|
||||
)
|
||||
|
||||
if matches:
|
||||
return CheckIgnoreResult(target, True, matches)
|
||||
return _no_match(target)
|
||||
|
||||
def is_ignored(self, path):
|
||||
# NOTE: can't use self.check_ignore(path).match for now, see
|
||||
# https://github.com/iterative/dvc/issues/4555
|
||||
return self.is_ignored_dir(path) or self.is_ignored_file(path)
|
||||
|
||||
|
||||
def init(path):
|
||||
dvcignore = os.path.join(path, DvcIgnore.DVCIGNORE_FILE)
|
||||
if os.path.exists(dvcignore):
|
||||
return dvcignore
|
||||
|
||||
with open(dvcignore, "w") as fobj:
|
||||
fobj.write(
|
||||
"# Add patterns of files dvc should ignore, which could improve\n"
|
||||
"# the performance. Learn more at\n"
|
||||
"# https://dvc.org/doc/user-guide/dvcignore\n"
|
||||
)
|
||||
|
||||
return dvcignore
|
||||
|
||||
+160
@@ -0,0 +1,160 @@
|
||||
import itertools
|
||||
import os
|
||||
import pathlib
|
||||
import platform
|
||||
import uuid
|
||||
|
||||
from dvc.exceptions import DvcException, NotDvcRepoError
|
||||
from dvc.repo import Repo
|
||||
from dvc.scm.base import SCMError
|
||||
from dvc.system import System
|
||||
from dvc.tree import TREES, get_tree_cls, get_tree_config
|
||||
from dvc.utils import error_link
|
||||
from dvc.utils.pkg import PKG
|
||||
from dvc.version import __version__
|
||||
|
||||
try:
|
||||
import psutil
|
||||
except ImportError:
|
||||
psutil = None
|
||||
|
||||
if PKG is None:
|
||||
package = ""
|
||||
else:
|
||||
package = f"({PKG})"
|
||||
|
||||
|
||||
def get_dvc_info():
|
||||
info = [
|
||||
f"DVC version: {__version__} {package}",
|
||||
"---------------------------------",
|
||||
f"Platform: Python {platform.python_version()} on "
|
||||
f"{platform.platform()}",
|
||||
f"Supports: {_get_supported_remotes()}",
|
||||
]
|
||||
|
||||
try:
|
||||
repo = Repo()
|
||||
|
||||
# cache_dir might not exist yet (e.g. after `dvc init`), and we
|
||||
# can't auto-create it, as it might cause issues if the user
|
||||
# later decides to enable shared cache mode with
|
||||
# `dvc config cache.shared group`.
|
||||
if os.path.exists(repo.cache.local.cache_dir):
|
||||
info.append(
|
||||
"Cache types: {}".format(_get_linktype_support_info(repo))
|
||||
)
|
||||
if psutil:
|
||||
fs_type = get_fs_type(repo.cache.local.cache_dir)
|
||||
info.append(f"Cache directory: {fs_type}")
|
||||
else:
|
||||
info.append("Cache types: " + error_link("no-dvc-cache"))
|
||||
|
||||
info.append(f"Caches: {_get_caches(repo.cache)}")
|
||||
|
||||
info.append(f"Remotes: {_get_remotes(repo.config)}")
|
||||
|
||||
except NotDvcRepoError:
|
||||
pass
|
||||
except SCMError:
|
||||
info.append("Repo: dvc, git (broken)")
|
||||
else:
|
||||
root_directory = repo.root_dir
|
||||
if psutil:
|
||||
fs_root = get_fs_type(os.path.abspath(root_directory))
|
||||
info.append(f"Workspace directory: {fs_root}")
|
||||
info.append("Repo: {}".format(_get_dvc_repo_info(repo)))
|
||||
return "\n".join(info)
|
||||
|
||||
|
||||
def _get_caches(cache):
|
||||
caches = (
|
||||
cache_type
|
||||
for cache_type, cache_instance in cache.by_scheme()
|
||||
if cache_instance
|
||||
)
|
||||
|
||||
# Caches will be always non-empty including the local cache
|
||||
return ", ".join(caches)
|
||||
|
||||
|
||||
def _get_remotes(config):
|
||||
schemes = (
|
||||
get_tree_cls(get_tree_config(config, name=remote)).scheme
|
||||
for remote in config["remote"]
|
||||
)
|
||||
|
||||
return ", ".join(schemes) or "None"
|
||||
|
||||
|
||||
def _get_linktype_support_info(repo):
|
||||
|
||||
links = {
|
||||
"reflink": (System.reflink, None),
|
||||
"hardlink": (System.hardlink, System.is_hardlink),
|
||||
"symlink": (System.symlink, System.is_symlink),
|
||||
}
|
||||
|
||||
fname = "." + str(uuid.uuid4())
|
||||
src = os.path.join(repo.cache.local.cache_dir, fname)
|
||||
open(src, "w").close()
|
||||
dst = os.path.join(repo.root_dir, fname)
|
||||
|
||||
cache = []
|
||||
|
||||
for name, (link, is_link) in links.items():
|
||||
try:
|
||||
link(src, dst)
|
||||
status = "supported"
|
||||
if is_link and not is_link(dst):
|
||||
status = "broken"
|
||||
os.unlink(dst)
|
||||
except DvcException:
|
||||
status = "not supported"
|
||||
|
||||
if status == "supported":
|
||||
cache.append(name)
|
||||
os.remove(src)
|
||||
|
||||
return ", ".join(cache)
|
||||
|
||||
|
||||
def _get_supported_remotes():
|
||||
|
||||
supported_remotes = []
|
||||
for tree_cls in TREES:
|
||||
if not tree_cls.get_missing_deps():
|
||||
supported_remotes.append(tree_cls.scheme)
|
||||
|
||||
if len(supported_remotes) == len(TREES):
|
||||
return "All remotes"
|
||||
|
||||
if len(supported_remotes) == 1:
|
||||
return supported_remotes
|
||||
|
||||
return ", ".join(supported_remotes)
|
||||
|
||||
|
||||
def get_fs_type(path):
|
||||
|
||||
partition = {
|
||||
pathlib.Path(part.mountpoint): (part.fstype + " on " + part.device)
|
||||
for part in psutil.disk_partitions(all=True)
|
||||
}
|
||||
|
||||
path = pathlib.Path(path)
|
||||
|
||||
for parent in itertools.chain([path], path.parents):
|
||||
if parent in partition:
|
||||
return partition[parent]
|
||||
return ("unknown", "none")
|
||||
|
||||
|
||||
def _get_dvc_repo_info(self):
|
||||
if self.config.get("core", {}).get("no_scm", False):
|
||||
return "dvc (no_scm)"
|
||||
|
||||
if self.root_dir != self.scm.root_dir:
|
||||
return "dvc (subdir), git"
|
||||
|
||||
return "dvc, git"
|
||||
+6
-2
@@ -7,13 +7,17 @@
|
||||
TEXT_CHARS = bytes(range(32, 127)) + b"\n\r\t\f\b"
|
||||
|
||||
|
||||
def istextfile(fname, blocksize=512):
|
||||
def istextfile(fname, blocksize=512, tree=None):
|
||||
""" Uses heuristics to guess whether the given file is text or binary,
|
||||
by reading a single block of bytes from the file.
|
||||
If more than 30% of the chars in the block are non-text, or there
|
||||
are NUL ('\x00') bytes in the block, assume this is a binary file.
|
||||
"""
|
||||
with open(fname, "rb") as fobj:
|
||||
if tree:
|
||||
open_func = tree.open
|
||||
else:
|
||||
open_func = open
|
||||
with open_func(fname, "rb") as fobj:
|
||||
block = fobj.read(blocksize)
|
||||
|
||||
if not block:
|
||||
|
||||
Some files were not shown because too many files have changed in this diff Show More
Reference in New Issue
Block a user