Commit Graph
7006 Commits
Author SHA1 Message Date
Saugat Pachhai d3d459caa0 Revert "deps: require chardet as a dependency"
This reverts commit a4dc8ddc74.
2021-11-02 06:17:31 +05:45
Saugat Pachhai a4dc8ddc74 deps: require chardet as a dependency
Looks like azure-core is dependent on a dependency `chardet` that aiohttp brought it with, which has been replaced with `charset_normalizer`.
But azure-core depends on internal of aiohttp and looks like it tries to set it's own encoding parser, `chardet` which is now not available.
2021-11-01 18:25:39 +02:00
Saugat Pachhai 3eceeea3e8 Remove python 3.10 restriction for pyarrow
Pyarrow 6 is now available for Python 3.10. Fixes https://github.com/iterative/dvc/issues/6878.
2021-11-01 20:00:21 +05:45
Saugat Pachhai (सौगात) 8fc959060a tests: skip based on conditional import on pyarrow
From now on, pyarrow dependency is optional for the tests.
2021-11-01 19:15:28 +05:45
David de la Iglesia Castro 0638d99fe3 LiveTask: write output path at start/end
Writing at the end of each step (create_summary) can mess up with some ML Framework progress bars, I moved the message to the monitor task, as the path won't change during training.

Fixes iterative/dvclive#177
2021-10-29 14:41:03 +02:00
David de la Iglesia Castro 24abc6f328 TabularData: Add dropna method.
This method mimics pandas `dropna`.
2021-10-29 15:28:36 +03:00
David de la Iglesia Castro 4dd544121f plots: Use URI for --open.
We were previously using relpath in *all* cases, mainly to support WSL but relpath doesn't work
on macOS.

Added a check for using relpath *only* for WSL.

Fixes #6092
2021-10-29 13:27:12 +02:00
Ruslan Kuprieiev 869ea442ef output: save: remove redundant changed() call
No longer needed since object introduction, as we will compare staged
object during commit/checkout anyway.
2021-10-29 01:45:10 +03:00
Ruslan Kuprieiev 922eb20e44 staging: don't use move 2021-10-27 20:19:17 +03:00
Ruslan Kuprieiev a2f91ed5fd checkout: always confirm link type
Currently whether or not link confirmation will run depends on
particular filesystem and existing workspace link type, which introduces
inconsistency in behaviour, where we sometimes catch unsupported links
before touching user data and sometimes we don't.
2021-10-27 20:19:17 +03:00
Ruslan Kuprieiev 017762fc2c checkout: don't forget to protect() back objects
Depending on a filesyste (e.g. on NTFS), `_remove` might reset
read-only permissions in order to delete a hardlink to protected object,
which will also reset it for the object itself, making it unprotected,
so we need to protect it back.
2021-10-27 20:19:17 +03:00
Ruslan Kuprieiev 874aceccf8 system: use linkat instead of link
`os.link` is broken across platforms when dealing with symlinks.

See https://bugs.python.org/issue41355 for more info.
2021-10-27 20:19:17 +03:00
Ruslan Kuprieiev 41aee9a3b7 localfs: use mtime/size/inode for checksum
Currently it depends on the whole `info()` output, which has too much
information that doesn't really matter. To check if file contents didn't
change mtime, size, inode combo is enough.
2021-10-27 20:19:17 +03:00
Peter Rowlands (변기호) 0d895e2661 exp: add initial ssh executor (#6833)
* executor: move local specific git initialization out of base

* machine: return kwargs for executor init instead of executor object

* executor: add initial ssh executor

* ssh-executor: disable strict host checking for dvc-machine instances

* initial tests for ssh executor

* drop GIT_SSH_COMMAND usage

* push: accept destination odb as a parameter

* separate cache initialization into executor.init_cache

* add test for ssh executor cache init

* remove dead code

* machine: fixture-ize default test scenarios

* test SSHExecutor.from_machine

* tpi: return default SSH port for constructing executors
2021-10-26 16:08:17 +09:00
Saugat Pachhai 14eaba4cdb exp init: iterate on ui, tree and show to-be-generated yaml content (#6750)
* iterate on ui, has tree and shows to-be-generated yaml content

* order fs tree structure alphabetically

* always show the heading

* hide dvclive on tree if not on live mode

* Change message at the end

* s/skip/omit

* add link on the header

* remove newline on non-interactive mode
2021-10-26 08:22:33 +05:45
Dave Berenbaum 3064738a34 fix msg in for ExperimentExistsError (#6864) 2021-10-26 10:55:08 +09:00
GaoandPeter Rowlands c07592131a exp run: add experiment name check. (#6848)
* Add experiment name check.

1. Add experiment name check (https://git-scm.com/docs/git-check-ref-format)
2. Add duplicate exp name check.
3. Add some unit test for it.

* Ban slash / in dvc exp names

* Use dulwich backend for ref name checking

* Some bug fix

* Update dvc/repo/experiments/__init__.py

Co-authored-by: Peter Rowlands (변기호) <[email protected]>

* Update dvc/repo/experiments/__init__.py

Co-authored-by: Peter Rowlands (변기호) <[email protected]>

* Some review changes

* Make some funtion more reusable.

Co-authored-by: Peter Rowlands (변기호) <[email protected]>
2021-10-25 20:16:37 +09:00
Saugat Pachhai 52a9cddc14 exp init: remove default in cli, add default in help instead (#6862)
The default made it harder to detect between the default and explicitly provided values, which we need for interactive mode.
2021-10-25 16:32:17 +05:45
Ruslan Kuprieiev 38cbebfb28 fs: transfer: try reflink (#6853)
If supported, reflink, will provide the fastest transfer possible.
That being said, right now we use `move` in most of the places,
which still takes presidence.

Pre-requisite for #6387
2021-10-24 22:46:02 +03:00
dependabot[bot]andSaugat Pachhai 5017c2f282 build(deps): update pyparsing requirement from ==2.4.7 to >=2.4.7
build(deps): update pyparsing requirement from ==2.4.7 to >=2.4.7 

Updates the requirements on [pyparsing](https://github.com/pyparsing/pyparsing) to permit the latest version.
- [Release notes](https://github.com/pyparsing/pyparsing/releases)
- [Changelog](https://github.com/pyparsing/pyparsing/blob/master/CHANGES)
- [Commits](https://github.com/pyparsing/pyparsing/compare/pyparsing_2.4.7...pyparsing_3.0.0)

Signed-off-by: dependabot[bot] <[email protected]>

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2021-10-24 15:22:46 +00:00
dependabot[bot] 1bf6cc7c2f build(deps): bump pylint-pytest from 1.0.3 to 1.1.2 (#5894)
Bumps [pylint-pytest](https://github.com/reverbc/pylint-pytest) from 1.0.3 to 1.1.2.
- [Release notes](https://github.com/reverbc/pylint-pytest/releases)
- [Changelog](https://github.com/reverbc/pylint-pytest/blob/master/CHANGELOG.md)
- [Commits](https://github.com/reverbc/pylint-pytest/compare/pylint-pytest-1.0.3...pylint-pytest-1.1.2)

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2021-10-24 20:08:58 +05:45
dependabot[bot] 27666ffba7 build(deps-dev): Bump dvclive from 0.4.1 to 0.4.2 (#6846)
Bumps [dvclive](https://github.com/iterative/dvclive) from 0.4.1 to 0.4.2.
- [Release notes](https://github.com/iterative/dvclive/releases)
- [Commits](https://github.com/iterative/dvclive/compare/0.4.1...0.4.2)

---
updated-dependencies:
- dependency-name: dvclive
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

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2021-10-24 19:03:24 +05:45
Ruslan Kuprieiev e2d705fd76 link: use proper exceptions (#6852)
* link: use proper exceptions

* system: use ENOTSUP instead of NotImplementedErrorwq
2021-10-23 02:38:17 +03:00
Saugat Pachhai 719e93192f move scm.install to dvc.install (#6849)
scm.install does 3 different things, and all of those are
very much tied to DVC. So, as we are splitting scm out,
it should now belong to `dvc.install`.
2021-10-22 14:53:33 +03:00
Saugat Pachhai 501256708d use system hook for mypy; fix raised issues (#6851) 2021-10-22 15:40:54 +05:45
Saugat Pachhai 800fbc7ad0 Use -n=auto in tests
Linux/Windows machines have only 2 cores, whereas macOS machines have 3 cores. Maybe we are stretching available resources by 2x, let's see if `-n=auto` improves test freezes.
2021-10-22 08:46:55 +05:45
Peter Rowlands (변기호) 73f2fa8c93 git: use asyncssh as dulwich SSH vendor (#6797)
* git: support client kwargs for auth in remote methods

* tests: use docker for git/ssh server

* move dulwich backend into subdir

* add base sync<->async support

* dulwich: add initial asyncssh SSH vendor

* dulwich: use asyncssh as the default SSH vendor

* add test for git over ssh

* test read (fetch) over ssh

* ci: re-enable ssh tests

temporary workaround for #6788, #6789

* move async stubs into dvc.scm.asyn

* tests: use sshfs and not dvc.fs.ssh

* allow explicit 0-length read in asyncssh vendor
2.8.2
2021-10-21 14:36:45 +09:00
b652670cbf Dependabot/pip/pylint 2.11.1 (#6843)
* build(deps): Bump pylint from 2.9.6 to 2.11.1

Bumps [pylint](https://github.com/PyCQA/pylint) from 2.9.6 to 2.11.1.
- [Release notes](https://github.com/PyCQA/pylint/releases)
- [Changelog](https://github.com/PyCQA/pylint/blob/main/ChangeLog)
- [Commits](https://github.com/PyCQA/pylint/compare/v2.9.6...v2.11.1)

---
updated-dependencies:
- dependency-name: pylint
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

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* fix pylint problems

* Updation after rebase.

* system: use binary mode

* Set remote execution script encoding type locale

* Update dvc/machine/__init__.py

Co-authored-by: Peter Rowlands (변기호) <[email protected]>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Ruslan Kuprieiev <[email protected]>
Co-authored-by: Peter Rowlands (변기호) <[email protected]>
2021-10-20 14:34:10 +03:00
Gao 6de3e734ed Revert "build(deps): Bump pylint from 2.9.6 to 2.11.1 (#6636)" (#6842)
This reverts commit 464620806c.
2021-10-20 12:41:00 +03:00
Gao 4b2bec89ec dvc machine: add a new command rename to it (#6633)
* `dvc machine`: add a new command `rename` to it

fix #6481
1. add new command `dvc machine rename`
2. add a unit test for the call.
3. add several functional tests for it.t push myself fix6481

* Move rename logic to tpi

* use tpi.state_mv instead of rename

* Rebase to a newer version

* Update tpi version

* Remove unused assert and try catch
2021-10-20 15:57:44 +09:00
Saugat Pachhai 6c0bc9563c enable pywin32 for Python3.10, make it an optional dependency (#6841) 2021-10-20 11:25:00 +05:45
f964a44e7c Exp show md (#6799)
* Added `--md`/`--show-md` option to `exp show`.

* Added test_show_experiments_md

* Fixed re-defining all_experiments

* Fixed all_experiments

* [pre-commit.ci] auto fixes from pre-commit.com hooks

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* Added dest markdown

* Added textwrap.dedent

* [pre-commit.ci] auto fixes from pre-commit.com hooks

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* Update experiments.py

* Apply suggestions from code review

Co-authored-by: Saugat Pachhai <[email protected]>

* Update tests/unit/command/test_compat_flag.py

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2021-10-20 11:04:57 +05:45
464620806c build(deps): Bump pylint from 2.9.6 to 2.11.1 (#6636)
* build(deps): Bump pylint from 2.9.6 to 2.11.1

Bumps [pylint](https://github.com/PyCQA/pylint) from 2.9.6 to 2.11.1.
- [Release notes](https://github.com/PyCQA/pylint/releases)
- [Changelog](https://github.com/PyCQA/pylint/blob/main/ChangeLog)
- [Commits](https://github.com/PyCQA/pylint/compare/v2.9.6...v2.11.1)

---
updated-dependencies:
- dependency-name: pylint
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

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* fix pylint problems
* system: use binary mode

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: karajan1001 <[email protected]>
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2021-10-20 10:32:44 +08:00
Saugat Pachhai 4244e5a475 fix #6835 (#6837) 2021-10-19 21:59:09 +03:00
Saugat Pachhai 0c41a25bbe move some configs to pyproject.toml (#6834) 2021-10-19 19:47:51 +03:00
Matthew Beckers 26f435a433 exp run: throw error if new parameters are added by --set-param (#6521)
* throw error if new parameters are added by dvc run exp -S

Throws an error if dvc run exp --set-param references a parameter key path
that is not in the target config file. This is done to prevent silent errors
in experimentation when new params are accidentally added instead of modifying
current ones due to typos.

This implementation is based on initial suggestions in issue #5477.

* fix mypy confusion from overwriting a var

* tests: remove modify param test that was adding params

One of the test in test_modify_params was still adding a parameter

* tests: remove param modification during exp run in test_untracked

Spurious usage of modifying a parameter when the params.yaml is not yet existing in test_untracked.

* remove benedict dependency for verifying params

Instead, the keypath util module from benedict is adapted into the dvc codebased and used
natively to verify that a keypath exists within a dict.

* exp: list all invalid param modifications in error message

* exp-run: more specific exception for new params via --set-param

Uses established MissingPramsError instead of DvcException. Modified message to be more similar to other uses of this exception.

* Revert "remove benedict dependency for verifying params"

This reverts commit 6170f16dcc4033667fbacb0d0bc13c60898f58c4.

* exp: use internal benedict import for validating params

* exp: combine new param validation into merge_params

Moves new param validation into existing merge_params function as an optional check

* exp: minor ammendments to error message

* Revert "tests: remove param modification during exp run in test_untracked"

This reverts commit c9eb1a62af58586509ded362cc79e75ddc4b119c.

* exp: fix test_untracked to not fail due to new params

Fixed by creating the params file with the new parameter already present.
2021-10-19 17:46:36 +09:00
966dc8a1ca machine: Add a new command dvc machine status (#6649)
* machine: Add a new command `dvc machine status`

fix#6482
1. add a new command `dvc machien status`
2. add a unit test for the cli call.
3. add a unit test for the shown result.

* Update dvc/command/machine.py

Co-authored-by: Saugat Pachhai <[email protected]>

* Update dvc/command/machine.py

Co-authored-by: Saugat Pachhai <[email protected]>

* Update machine.py

* Remove sensitive fields

* Update dvc/machine/__init__.py

Co-authored-by: Casper da Costa-Luis <[email protected]>

* Update tests/func/machine/__init__.py

Co-authored-by: Casper da Costa-Luis <[email protected]>

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* Use white list to limit shown fields

Co-authored-by: Saugat Pachhai <[email protected]>
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2021-10-19 17:38:11 +09:00
eggqq007andZhenyu Gao 6d96ecb376 dvcfs: handle new workspace subdirectories in walk (#6811)
1. add try-catch to catch KeyError exception while walking dvc folder
2. Fix #6695

Co-authored-by: Zhenyu Gao <[email protected]>
2021-10-19 17:33:02 +09:00
Batuhan Taskaya 9e57d1c32d gdrive: remove redundant _gdrive_retry function (#6831) 2021-10-18 21:52:39 +00:00
Batuhan Taskaya c08655ac38 plots: fix the dictionary to return PathInfos (#6830) 2021-10-18 22:04:21 +02:00
David de la Iglesia Castro 4f16852005 exp/metrics/params diff: Replaced Old/New with a_rev/b_rev (#6814)
* Replaced Old/New with a_rev/b_rev

* Fixed tests
2021-10-18 21:09:02 +03:00
Ruslan Kuprieiev 7bef6fd64f setup: bump fsspec deps (#6828) 2021-10-18 21:01:03 +03:00
pre-commit-ci[bot] 422d883e18 [pre-commit.ci] pre-commit autoupdate (#6829)
updates:
- [github.com/lovesegfault/beautysh: v6.1.0 → v6.2.1](https://github.com/lovesegfault/beautysh/compare/v6.1.0...v6.2.1)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
2021-10-18 20:47:48 +03:00
Saugat Pachhai 48004b1340 Revert "webdav: limit httpx to fix the CI" (#6827)
* Revert "webdav: limit httpx to fix the CI (#6800)"

This reverts commit af34f5a0f1.

* Bump webdav4 requirement
2021-10-18 20:32:46 +03:00
dependabot[bot] 2ae421cea2 build(deps-dev): Bump filelock from 3.3.0 to 3.3.1 (#6825)
Bumps [filelock](https://github.com/tox-dev/py-filelock) from 3.3.0 to 3.3.1.
- [Release notes](https://github.com/tox-dev/py-filelock/releases)
- [Changelog](https://github.com/tox-dev/py-filelock/blob/main/docs/changelog.rst)
- [Commits](https://github.com/tox-dev/py-filelock/compare/3.3.0...3.3.1)

---
updated-dependencies:
- dependency-name: filelock
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

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2021-10-18 19:53:37 +05:45
dependabot[bot] 812fde9891 build(deps-dev): Bump types-requests from 2.25.9 to 2.25.11 (#6820)
Bumps [types-requests](https://github.com/python/typeshed) from 2.25.9 to 2.25.11.
- [Release notes](https://github.com/python/typeshed/releases)
- [Commits](https://github.com/python/typeshed/commits)

---
updated-dependencies:
- dependency-name: types-requests
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

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2021-10-18 19:51:13 +05:45
dependabot[bot] 4ed4766692 build(deps): Bump actions/checkout from 2.3.4 to 2.3.5 (#6817)
Bumps [actions/checkout](https://github.com/actions/checkout) from 2.3.4 to 2.3.5.
- [Release notes](https://github.com/actions/checkout/releases)
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)
- [Commits](https://github.com/actions/checkout/compare/v2.3.4...v2.3.5)

---
updated-dependencies:
- dependency-name: actions/checkout
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

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2021-10-18 19:43:41 +05:45
dependabot[bot] 9943cd43b1 build(deps-dev): Bump types-tabulate from 0.8.2 to 0.8.3 (#6790)
Bumps [types-tabulate](https://github.com/python/typeshed) from 0.8.2 to 0.8.3.
- [Release notes](https://github.com/python/typeshed/releases)
- [Commits](https://github.com/python/typeshed/commits)

---
updated-dependencies:
- dependency-name: types-tabulate
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

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2021-10-18 19:42:50 +05:45
dependabot[bot] 7d3f35e6ab build(deps-dev): Bump types-toml from 0.10.0 to 0.10.1 (#6821)
Bumps [types-toml](https://github.com/python/typeshed) from 0.10.0 to 0.10.1.
- [Release notes](https://github.com/python/typeshed/releases)
- [Commits](https://github.com/python/typeshed/commits)

---
updated-dependencies:
- dependency-name: types-toml
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

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2021-10-18 20:57:43 +09:00
dependabot[bot] 4de261f717 build(deps-dev): Bump dvclive from 0.4.0 to 0.4.1 (#6786)
Bumps [dvclive](https://github.com/iterative/dvclive) from 0.4.0 to 0.4.1.
- [Release notes](https://github.com/iterative/dvclive/releases)
- [Commits](https://github.com/iterative/dvclive/compare/0.4.0...0.4.1)

---
updated-dependencies:
- dependency-name: dvclive
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

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2021-10-18 13:33:26 +03:00