* stage: extract unnecessary methods out of Stage class
* stage: change naming of functions
* stage: extract dump equal to utils
* stage: extract computation of md5 to utils
* stage: extract command run related logic in run.py
* stage: reorganize run()
* stage: boolean cosmetic changes
* stage: reorder save() and extract some into func
* stage: refactor status() into smaller functions
* extract resolve_wdir into utils
* merge _changed() and changed()
* cosmetic changes
* extract dump to utils
* extract import updates/sync to imports.py
* remove meta from PipelineStage
* fix imports, params load
* make run_stage a function, fix mocks in tests
* use original cmd
* rollback imports on decorators
* fix ds and cc
* params/metrics: diff: implement tabulated markdown output
Via `--show-md` on `diff`s.
* table: show None on missing val
* tests: use `dedent`, add tests for markdown
* diff: add --show-md
Co-authored-by: Ruslan Kuprieiev <[email protected]>
Note: This does not change default for `pipeline` as
it cannot show multiple DAGs at the same time. If we
are able to show multiple DAGs, we can just default to
`dvc.yaml`.
* pull/fetch/push: add stats
* fix typo: s/logging/logger
* pull: make stats detailed, with summary at the bottom
* tests: mock properly, set return_value
* add a line space
On is_cached, we used to compare two dicts: one of current stage in memory
created by `run` and one that's already written to the file.
As `outs` and `dicts` are lists (which is generate by `dumpd`), the
comparison was dependent on the order of outs and dicts.
So, the `run` before and now, can be in different order and would fail
the comparisons.
* dump: lockfile is dumped deterministically
The dump is no longer deterministic/dependent on the pipeline file,
but is sorted based on file names in outs, deps or params.
Also, the params inside each files are also sorted based on name.
However, the objects inside params are not sorted deterministically
as I think it's too much to sort that, and is not easy (considering
the types of objects it might hold, eg: lists, objects, etc).
This will also provide ordered dumps for Python3.5
* fix windows 3.8 test
Co-authored-by: Ruslan Kuprieiev <[email protected]>
* dvc: use lockfile as yaml instead of json
* refactor Dvcfile into Pipeline file and Single stage file
* fix tests
* dvc: fix outputs
* add more tests for collection of outputs
* add tests for data cloud/get/import/ls
* tests: test for checkouts
* Allow other checksums other than md5
* tests: use iterdir instead of os.listdir
* cleanup errors reported by cc and ds
* utils: throw DvcException instead of plain Exception
* tests: use yaml.load instead of json.load
* run: split assignments
* Update dvc/stage/exceptions.py
Co-authored-by: Ruslan Kuprieiev <[email protected]>
Now, pipeline stage files can house multiple stages, and separate lockfiles
are created which has the checksums, whereas Dvcfile will be clean and human
readable and editable. The *.dvc files will be generated for output files.
It is available via a hidden flag: -n.
Fixes#1871
PR: #3584
* refactor stage into dvcfile
* Split create_stage out of dvcfile to Stage::create() and overwrite
* Remove logging from Repo::run
* tests: stop using --remove-outs
Co-authored-by: Ruslan Kuprieiev <[email protected]>
* s3/gs: do not try to make directory on top level
* tests: unittest makedirs for s3 and gs
* remove setattr and use patch.object
* Update tests/unit/remote/test_remote.py
* pull: support pulling git-only imports
* pull: also add git imports from external dvc repo
* fetch: add logging
* pull: don't save link to state
When `checkout` or `pull` is done, it'll try to cleanup unused links.
So, when we add from erepo to cache, it creates a link, which DVC will try
to cleanup. Also, it'll provide unwanted checkout change details. So, skipping those
* tests: refactor/rewrite
* flake8: why it's complaining?
* tests: do not leak file descriptors
* tests: importing from bare repo
* external_repo: don't try too hard to set upstream repo especially if url is not a dvc repo.
* Update tests/func/test_import.py
* Add a comment regarding bare-repo clone
* py38: make wheels
- ci: set ARROW_LIBHDFS_DIR to load native library
- deps: pin pyarrow to 0.15.1 for py<=3.7
- pin deps for python<3.8
- pin deps for python==3.8 as well
- add windows Py38 on travis
- do not use speedcopy for Python3.8 and Windows
* use realpath to resolve symbolic links
* do not build pkgs for Windows and Linux on Python3.8
* reorder
* pyarrow: document regression fix
Co-authored-by: Casper da Costa-Luis <[email protected]>
* checkout: implement --show-changes flag to show detailed checkout details
Show summary by default on checkout
checkout: show directory modified even when files are removed from inside it
checkout: refactor template logic
checkout: change output format
checkout: do not show summary if nothing's changed
checkout: do not show summary if show_changes is specified
checkout: show '/' at the end if it's a directory
rename variable name
test: cover stats for checkout
checkout: show relink as not modified
checkout: remove unwanted message during empty checkout
pull: show summary on checkout
import/get: change external_repo to catch CheckoutError
fix tests and check if path is url
checkout: support external deps/outputs
tests: checkout on external outputs
* fix tests
* checkout: make show changes default and introduce summary flag to show summary
* address suggestions
* exceptions: remove extra spacing on erorr
* Update dvc/command/checkout.py
Co-Authored-By: Jorge Orpinel <[email protected]>
Co-authored-by: Jorge Orpinel <[email protected]>
* gc: make it safer by only activating by use of certain flags
Previous plain `gc` is now not supported. The same behavior can be trigger by
`gc -w` or `gc --workspace`. When `--all-{tags, commits, branches}` are
specified, it will work as if `-w` is also specified (same as before).
* tests: adjust gc to use workspace on test_repro
* repo: throw if root_dir in Repo.__init__() is not a directory path
When Repo is instantiated with invalid urls such as 'http://github.com/iterative/dvc.git',
it does os.path.realpath which is not intelligent enough and just concatenates with current
working directory, which is then traversed outward. It might happen that the outward folder
is a dvc directory which is not really what we want.
So, a check for root to be a directory is added. Otherwise, NotDvcRepoError is thrown with
a custom message.
* repo: set message from raise for NotDvcRepoError
On windows, `str(exc_info)` is returning escaped path, eg:
'<ExceptionInfo UrlNotDvcRepoError("URL \'C:\\\\Users\\\\travis\\\\AppData\\\\Local\\\\Temp\\\\pytest-of-travis\\\\pytest-0\\\\popen-gw2\\\\test_get_url_git_only_repo_thr0\' is not a dvc repository.") tblen=2>'
This commit just replaces the double slashes with single one. Bit of a hack, I know.
* master:
address @efiop's suggestions
s3: add support for top level empty directories
remote: http: calculate length basing on response and not head call
test: remote: http: clear test file name
HTTPError: reformat error message
Update dvc/remote/http.py
remote: http: rename http error, refactor test
remote: http: raise exception when download response with error status code
Support GDrive as remote
setup: don't forget contextlib2
remote: refactor ssh ask password code
remote: protect all remote client/session creation code with locks
test: refactor & remove redundant test fixtures
NoRemoteInExternalRepoError: dont pass cause of exception
perf: optimize cache listing for local, ssh and hdfs
remote: small .save_info()/.get_checksum() cleanup
Saugat Pachhai
