Commit Graph
6259 Commits
Author SHA1 Message Date
Batuhan Taskaya bb46043689 add: implement saving straight to cache (#5301)
* add: implement saving straight to cache

* Adjust CLI error cases to handle -o

* make tests pass on windows

* support explicit --jobs

* simplify the implementation a bit

* polish the tests
2021-01-28 14:42:58 +02:00
Ruslan Kuprieiev fe2d913821 list: don't clone local repos (#5341)
* repo: introduce Repo.open

* ls: don't clone local repos
2021-01-28 03:05:05 +02:00
Ruslan Kuprieiev 969a85efb6 RepoTree: get rid if implicit fetching (#5324) 2021-01-27 02:01:09 +02:00
Saugat Pachhai b1d6918c5a stage collection: do not collect .gitignored dvcfiles (#5265)
* Do not collect .gitignored dvcfiles

* fix exc

* consistent error message

* fix imports

* add tests
2021-01-26 14:51:02 +02:00
Batuhan TaskayaandRuslan Kuprieiev a5e19ecd6a tree: Implement upload_fobj protocol to all trees (#5307)
* tree: Implement upload_fobj protocol to azure

* tree: Implement upload_fobj protocol to google storage

* tree: Implement upload_fobj protocol to google drive

* tree: Implement upload_fobj protocol to hdfs

* tree: Implement upload_fobj protocol to oss (alibaba cloud)

* tree: Implement upload_fobj protocol to webhdfs (also some cleanup)

* tree: Implement upload_fobj protocol to http/https

* Add _generate_download_url() to the HTTP (for tests)

* tree: Implement a temporary upload_fobj protocol to webdav/webdavs

* Unify progress bars

* Lazily evaluate the file size, for http uploads

* Remove copy_fobj protocol and _transfer_file_as_whole

* show progress bar on cache transfer

* Simplify s3 upload

* Remove CHUNK_SIZE (except for some special cases)

* remove concurrency restrictions

* Update dvc/tree/oss.py

Co-authored-by: Ruslan Kuprieiev <[email protected]>

Co-authored-by: Ruslan Kuprieiev <[email protected]>
2021-01-26 13:57:51 +02:00
Ruslan Kuprieiev 434cd305e9 dvc: ignore errors on protect/set_exec (#5335)
Both of these are not fatal and could safely be ignored.

Fixes #5255
2021-01-26 03:46:14 +02:00
Ruslan Kuprieiev 8112ce36d1 dvc: move 'verify' property from tree to cache (#5334) 2021-01-26 02:00:35 +02:00
Ruslan Kuprieiev 6a1f3659f5 tests: limit pytest version by <6.2.2 (#5333) 2021-01-25 22:01:54 +02:00
Batuhan Taskaya ec82c3fff5 tests: azure directory generation (#5328) 2021-01-25 15:41:29 +02:00
Peter Rowlands (변기호) d4757120c9 exp show: cleanup data column handling (#5329)
* account for identical param/metric names in columns (disable filtering)

* update filtering
2021-01-25 22:19:20 +09:00
Saugat Pachhai 9f0b86f221 unit.scm.test_git: use pytest instead of unittest (#5325) 2021-01-25 10:23:46 +05:45
Ruslan Kuprieiev 48dbcf9163 repo: remove unused find_out_by_relpath (#5323) 2021-01-25 01:24:32 +02:00
Saugat Pachhai 3741f730e0 show git-add hint on stage:add, refactor scm_context (#5290)
* Refactor scm_context, show git-add hint on stage:add

* move tests
2021-01-24 22:43:38 +02:00
Ruslan Kuprieiev 58c97b963c hash_info: add __str__ (#5319) 2021-01-24 22:40:38 +02:00
Paweł Redzyński 6a9c0c5ce5 live/checkpoints: test continue (#5300)
* live: test resuming

* initial test, not working

* experiments: introduce DVCLIVE_RESUME env variable on resume
2021-01-24 22:06:37 +02:00
Saugat Pachhai 1d8761e0c9 Remove empty file tests/unit/command/test_commit.py (#5316)
When I opened it, I got confused for a second and had to double-check if it was really empty.
The empty file gives a false assurance. We do need to add one, which I'll add later, but for now,
we better remove it.
2021-01-23 18:27:43 +05:45
Paweł Redzyński 2277a1a655 metrics/plots/params: return ordered (#5297)
* metrics/plots/params: return ordered

* metrics/params/plots: add tests for return order
2021-01-22 20:57:43 +02:00
Ruslan Kuprieiev cbd7472079 dvc: refactor cache saving (#5314) 2021-01-22 19:07:36 +02:00
Batuhan Taskaya 7b59108379 push: Gradual task allocation for pushing big datasets (#5285) 2021-01-22 15:29:06 +02:00
Ruslan Kuprieiev c4888cbd7d dvc: get rid of ExternalRepo (#5309) 2021-01-21 23:03:53 +02:00
Ruslan Kuprieiev 9203d33a3c reqs: tests: remove awscli (#5306) 2021-01-21 18:09:35 +02:00
Timofey Yefimovandkarajan1001 60d83a74d7 dvcignore: Fix incorrect ignored output computation (#4986)
* dvcignore: Fix incorrect ignored output computation

* dvcignore: Fixed unignored patterns

Unignored patterns were shown in the dvc status output and caused Error.

Also made a bit of a refactoring in `matches` and `ignore`.

* dvcignore: Fix functional tests

Not sure if I follow, but tests assume that unignored files should trigger `check-ignore`. What was the intention?

* dvcignore: Fix stage.wdir being MagicMock

* Use `is_ignored` instead of `check_ignore`

1. use is_ignored to judge DVC ignore status.
2. use check_ignore to show ignore patterns.

* Solve tests fails

* Add a new tests

* Return to the old check_ignore logic.

* Pass the pylint

* Simplify ignore tests

Co-authored-by: karajan1001 <[email protected]>
2021-01-21 14:28:08 +02:00
Saugat Pachhai 689ae22fb4 Fix code-style issues in the parsing module (#5299) 2021-01-20 17:21:57 +05:45
Batuhan Taskaya b5068a9200 checkout: don't filter hash's if it is a file (#5298) 2021-01-20 12:36:47 +02:00
Ruslan Kuprieiev c6ce69dd30 erepo: move misc stuff out of erepo (#5296)
* erepo: move get_rev to repo

* erepo: move fetch defaults to external_repo
2021-01-20 07:08:00 +02:00
Ruslan Kuprieiev 7cbcd4a7be erepo: separate caching and repo (#5295)
* erepo: don't pass for_write

* erepo: move get_cache_dir out of ExternalRepo
2021-01-20 00:25:15 +02:00
Ruslan Kuprieiev 03fc531a5c pylint: enable no-else-return (#5294)
From https://github.com/iterative/dvc/pull/5270#discussion_r559440586
2021-01-19 22:12:46 +02:00
Ruslan Kuprieiev d038bca05e tests: add basic [web]hdfs mockers (#5279) 2021-01-19 20:03:16 +02:00
Saugat Pachhai d8982c6db7 Override __str__ implementation for StageNotFound (#5289)
This happens because KeyError quotes the error message.
We'd still like to keep StageNotFound being a KeyError
semantics, but workaround the __str__ implementation.

Mypy was having some problem with the previous `__str__`
override.
2021-01-19 18:33:18 +05:45
Saugat Pachhai 372d6f045b Introduce stage:list command with autocompletions (#5282)
* Implement stage:list

* change targets help message
2021-01-19 17:35:55 +05:45
Batuhan Taskaya 51ada6d272 Implement straight-to-remote functionality (#5198)
* Implement export-to-remote functionality

* Redistrubition of functionality from tree to remote

* Pass chunk size into the open_url

* Move functionality away from remote to cache

* Basic progress bars for both transfer types

* Proper job calculation

* Redesign .open() usage in order to work with different trees

* Align the signatures of other open() functions to accept **kwargs

* Implement chunked uploading to the ssh

* Use local cache to compute directory hash (md5)

* S3: multipart upload test

* Wrap local cache's hash_to_path with PathInfo

* Use .isdir() instead of a try/except statement for calculating the from_infos

* New CLI layout (add/import-url)

* Adjust CLI tests to accept new arguments

* tests: import_url/add func/unit tests

* Introduce cache.transfer()

* Invalid CLI combination tests

* Store dir_info key in the transfer_directory

* LocalTree.upload_fobj

* Tests for utils

* Lazy imports on some places

* --to-remote migration (and repo._transfer)

* Use proper temporary location, more efficient pbar calc

* Directory transfer logic rewrite

* Use shutil.copyfileobj()

* Rebase...

* Better tests

* Inline transfer operation to .add() / .transfer()

* Open in the 'rb' mode for the tests

* More tests, better invalid option handling at repo level

* .read() certain amount of bytes to validate the content

* Better invalid argument handling

* Better progress bars by using .getsize() API

* For fallback upload, use the from_info.name instead of temporary naem

* introduce --jobs for add/import-url
2021-01-19 12:53:32 +02:00
Saugat Pachhai 55df6b8a6a cli: remove: Show traceback on verbose (#5287) 2021-01-19 15:10:56 +05:45
Pavel Ditenbir 8b0e0b995e cli: remove: fix error message for the case when file is not under control (#4497) (#5236)
* cli: remove: fix error message for the case when file is not under control (#4497)

* cli: remove: fix error message for the case when file is not under control (#4497)

fixes after code review

* cli: remove: fix error message for the case when file is not under control (#4497)

2nd round of fixes after code review

* cli: remove: fix error message for the case when file is not under control (#4497)

3rd round of fixes after code review
2021-01-19 15:04:19 +05:45
Peter Rowlands (변기호) 407f5607a2 scm: implement pygit2 resolve rev and native checkout (#5270)
* pygit2: implement get/set/remove refs

* pygit: implement iter_refs

* pygit: implement resolve_rev

* pygit2: implement working tree checkout

* pygit2: implement reset, explicitly read/write index when used

* pygit2: checkout does not need to reset index

* pygit2: handle "-" branch shorthand in checkout

* tests: install post-checkout hook should be run via gitpython

* exp apply: use stricter exception handling for merge conflict

* pygit: fix index read/write usage

* gitpython: handle untracked file conflicts in stash apply

* fix flaky/race index issue
2021-01-18 17:41:25 +02:00
Saugat Pachhai 78e12327bc use repo.stage.create_from_cli to create stages (#5281) 2021-01-18 18:55:19 +05:45
Ruslan Kuprieiev 4f2de7a3ef tests: remove psutil checks (#5283)
Leftover from https://github.com/iterative/dvc/pull/5232
2021-01-18 13:50:21 +02:00
Asif Saif UddinandRuslan Kuprieiev f8c9797f2a add psutil to install requirement (#5232)
* add  psutil to install requirement

* info: remove unneded checks

Co-authored-by: Ruslan Kuprieiev <[email protected]>
2021-01-18 12:30:38 +02:00
Paweł Redzyński 28f6beaf78 checkpoints/live: move execution env to stage (#5257)
* checkpoints/live: move execution env to stage

* stage: env: provide DVC_ROOT for all repo runs
2021-01-18 10:35:07 +02:00
Saugat Pachhai 628f87845c introduce stage:add command (#5263)
* Implement stage:add

* fix tests

* Add short flag -C for checkpoints
2021-01-18 10:05:36 +02:00
Ruslan Kuprieiev 273518afab hdfs: copy: don't read everything into memory (#5277)
Regression from #4973 and #4747
2021-01-16 00:57:13 +02:00
Ruslan Kuprieiev b027760e12 dvc: move protect from tree to cache (#5271) 2021-01-14 21:10:53 +02:00
Ruslan Kuprieiev a2cac8b423 tests: upgrade azurite and enable loose mode (#5272)
* tests: upgrade azurite and enable loose mode

Azure tests started failing recently. They still work with real azure, so this is on azurite side.

* tests: use cloud instead of workspace

also gdrive doesn't support it yet :(
2021-01-14 20:07:24 +02:00
Ruslan Kuprieiev 3e42e015d6 dvc: redefine is_callback as cmd and no outs/deps (#5187) 2021-01-14 17:23:20 +02:00
Saugat Pachhai 257f58450a refactor run; move to stage.utils (#5262)
* refactor run; move to stage.utils

* Update dvc/repo/run.py

* fix pylint

* skip on run-cache
2021-01-13 21:19:36 +02:00
Batuhan Taskaya c840cecc91 tree: implement getsize() (#5261)
* Implement Tree.getsize() API

* Remove azure from tests

* strip support for recursive size calculation

* _getsize() -> getsize()
2021-01-13 18:35:57 +02:00
Batuhan Taskaya e5f91f5c7f cache: don't initalize cloud cache until its needed (#5264) 2021-01-13 17:01:06 +02:00
Paweł RedzyńskiandSaugat Pachhai 2ee68b01b0 system: prevent mypy from checking windows-related method (#5260)
* system: prevent mypy from checking windows-related method

* Update dvc/system.py

Co-authored-by: Saugat Pachhai <[email protected]>

Co-authored-by: Saugat Pachhai <[email protected]>
2021-01-13 13:48:57 +02:00
Saugat Pachhai f8200ca2b8 move parsing params to utils (#5259)
* move parsing params to utils

* fix tests

* move chunk_dict and test it

* update test
2021-01-13 13:36:49 +02:00
Peter Rowlands (변기호) 228b3b16e5 experiments: exp res bug fixes (#5258)
* dvc repro: fail on checkpoint stages

* exp res: check for moved HEAD/baseline before resuming

* exp run/res: always consider last checkpoint as applied for workspace runs
2021-01-13 17:49:46 +09:00
Peter Rowlands (변기호) 1ab1abf62a git: implement merge/checkout via pygit2 (#5245)
* git: implement merge (gitpython, pygit2)

* pylint: add pygit2 as C extension

* git: s/checkout_paths/checkout_index/ and add pygit implementation

* git: support basic checkout/merge conflict strategies in checkout_index

* fix relpath issue in pygit merge

* git: add stubs for add --update

* experiments: drop remaining gitpython specific scm usage
2021-01-12 13:26:27 +02:00