* experiments: add utils.exp_commits for iterating over experiment commits
* repo: add support for all_experiments in brancher and used_cache
* git: make all_commits return commits in standard refs instead of --all
* gc: add --all-experiments to preserve cache for experiments
* update gc tests
* repo: support pushing and fetching specific revs internally
* exp push: push cache for experiment by default
* exp pull: pull cache for experiment by default
* fix empty git repo bug
* Add support for WebHDFS
* Style and linting fixes
* Implement abstract methods and disable no-member pylint errors
* Add init unit test
* Yield client and fix redefinition of hdfs
* Get dynamic hdfs Docker port
* Add support for open in WebHDFSTree
* Remove hdfscli_config fallbacks in WebHDFSTree
* Use port 50070 for webhdfs
* WebHDFSTree supports http URL and proper walking
* Fix failing unit test after refactoring
* Add overwrite argument to upload
* Add remaining func tests for webhdfs
* Remove print statements
* Allow dynamic attributes in pylint for hdfs library
* Comment error on instantiating HDFS client from config
* Remove depth argument from call to walk
* Update dvc/tree/webhdfs.py
* Remove unnecessary deque
* Check exception messages hdfs client failure from config
* Return client directly
Co-authored-by: Ruslan Kuprieiev <[email protected]>
* Split long line
* Add size to HashInfo
* Implement move via hdfs.rename
* Add missing line
* Make parent directories before moving file in WebHDFS
* Add total to progress bar
Co-authored-by: Ruslan Kuprieiev <[email protected]>
* dvc: get rid of is_walking_tree
No longer needed. Some applications of `isinstance()` will be refactored
in the future, as trees will just provide the needed functionality.
* dvc: move GitTree to dvc/tree/
* dvc: rename *RemoteTree to *Tree
* remove unnecessary generators/comprehensions
* Use dict literals
* remove unused variables
* misc fixes
ignore .iteritems, is a false +ve
remove function call in default argument
* Flake8 config: complexity, show source on err, show err counts
* flake8: add extensions
* remove flake8-string-format
* Add flake8-debugger support
* Add flake8-string-format extension
* remove flake8-debugger
It's having some problems to install on Windows in Travis
* remote: move constants into trees
* remote: replace Remote() Cache() helper functions
* output: update for remote changes
* cache/data_cloud: update for remote changes
* dependency: update for remote changes
* stage: update for remote changes
* remote: move remaining non-index methods into tree
* tests: update remote unit tests
* remote: LocalCache needs to lock remote index, not cache index
* fix bugs from moved PARAM_CHECKSUM/PARAM_RELPATH
* tests: repo tree open needs state context
* remote: make Remote.gc a class method
* operates on obj.tree, so that GC can be done with both remote and
cache instances
* bug fixes
* tests: update test_data_cloud
* bug fixes
* tests: update func tests
* BaseRemote: start moving tree functions into BaseRemoteTree
* remote: add LocalRemoteTree
* remote: add cloud remote trees
* remote: move remove(), makedirs() into tree
* remote: move move(), copy(), symlink(), hardlink(), reflink() into tree
* fix attributes for moved remote methods
* tests: update unit tests for moved remote tree methods
* tests: mv unit/remote/test_remote_dir.py unit/remote/test_remote_tree.py
* fix attributes for moved remote tree functions
* tests: update func tests for moved remote tree methods
* test fixes
* fix DS warnings
This should allow us to be able to remove a stage from a dvcfile,
(if it's a single stage file, it removes it), and make us able to
delete the overwrite the stage on run as well.
This commit:
* changes `run` `--overwrite-dvcfile` flag to `--overwrite`
* removes prompt in `run` for overwrite and fails hard
* changes `remove`: now it by default removes stage entry and unprotect outs
* `remove` has `--outs` to remove outputs instead of unprotecting them
* remote: remove unpacked dir
We've done a lot of optimizations lately, which made unpacked dir trick
obsoleted.
* local: save us a stat call in is_protected
* local: speedup checksum_to_path ~x5.5
* tree: walk: don't use os.path.join
It is ~5.5 times slower than joining by hand.
* dvcignore: optimize matching x10
On a repo with a dvcignore with 1 pattern and a directory with 400K
files, `dvc status` now takes ~8 sec instead of ~30 sec.
To achieve that, we make some assumptions about the paths formats that
we are dealing with, so we could use simpler logic instead of using
very slow `relpath`, `abspath` etc on every entry in a directory.
It is also clear that CleanTree behavior is inconsistent (even tests
expect very different outputs from it), so we will need to look into
this later.
* Renamed --outs-only to --dvc-only
* Changed outs_only to dvc_only
* replace output_only with dvc_only
* Restyled by black
Co-authored-by: Restyled.io <[email protected]>
* drop python 3.5 support
* dvc: remove fspath() use inside os.path calls
* dvc: replace dvc.compat.fspath with os.fspath
* tests: replace dvc.compat.fspath with os.fspath
* utils: relpath() should use fspath/str
* utils: os.readlink doesn't support path-like obj on Windows until 3.8
This patch introduces `.dvc/cache/stages` that is used to store previous
runs and their results, which could then be reused later when we stumble
upon the same command with the same deps and outs.
Format of build cache entries is single-line json, which is readable by
humans and might also be used for lock files discussed in #1871.
Related to #1871
Local part of #1234
* dvc: use lockfile as yaml instead of json
* refactor Dvcfile into Pipeline file and Single stage file
* fix tests
* dvc: fix outputs
* add more tests for collection of outputs
* add tests for data cloud/get/import/ls
* tests: test for checkouts
* Allow other checksums other than md5
* tests: use iterdir instead of os.listdir
* cleanup errors reported by cc and ds
* utils: throw DvcException instead of plain Exception
* tests: use yaml.load instead of json.load
* run: split assignments
* Update dvc/stage/exceptions.py
Co-authored-by: Ruslan Kuprieiev <[email protected]>
* repo: separate dir cache and file cache in memory
- `used_cache()`/`get_used_cache()` in repo/stage/output now return
tuples of (dir_cache, file_cache) instead of one flat/merged cache
* update tests for new get_used_cache behavior
* remote: if .dir checksum exists on remote, assume contents also exists
- affects all commands which use `cache_exists()` (remote status)
* push: only upload .dir file after full file contents has been uploaded
* gc: always remove .dir checksums first
* functional tests for push/gc
* repo: support nesting dir caches in NamedCache
* remote: NamedCache updates
* Fix tests
* Fix deepsource warnings
* tests: use pytest mocker fixture
* Update dvc/cache.py
Co-Authored-By: Saugat Pachhai <[email protected]>
Co-authored-by: Ruslan Kuprieiev <[email protected]>
Co-authored-by: Saugat Pachhai <[email protected]>
* gc: make it safer by only activating by use of certain flags
Previous plain `gc` is now not supported. The same behavior can be trigger by
`gc -w` or `gc --workspace`. When `--all-{tags, commits, branches}` are
specified, it will work as if `-w` is also specified (same as before).
* tests: adjust gc to use workspace on test_repro
- `tmp_dir` descends from Path
- convenient template methods to generate files and dirs, add them to
dvc and git and commit to git
- independent of old basic_env structures
- can go in any order
- modular: start with empty `tmp_dir`, initialize git with `scm`, dvc
repo with `dvc` add "repo template" with `repo_template`, ...
* dvc: fix branch suffixes in status/push/pull
* gc: add --all-commits flag
* gc: fix gc warning
Say that we always leave things used in the working tree
Peter Rowlands (변기호)
Tomás Farías SantanaandRuslan Kuprieiev
Saugat Pachhai
Shankho Boron GhoshandRestyled.io
Paweł Redzyński
Casper da Costa-Luis
nik123
Mr. Outis
Alexander Schepanovski
Sujith H
Ivan Shcheklein
Ruslan Kuprieiev