Commit Graph
88 Commits
Author SHA1 Message Date
Ruslan Kuprieiev afe539aaba plots: rename --no-csv-header to --no-header (#4001)
* plots: rename --no-csv-header to --no-header

Fixes #3996

* fix typo
2020-06-10 03:34:25 +03:00
Ruslan Kuprieiev db69def834 status: introduce --show-json (#3998)
Fixes #1406
2020-06-10 01:51:30 +03:00
Alexander Schepanovski 7230d87137 Refactor plots (#3994)
- separate data collection and rendering
- provide a way to use custom template loader
- drop hard-coding datafiles in template feature
2020-06-09 22:47:17 +03:00
Alexander Schepanovski 9a55b909f8 Rename --xlab to --x-label, X_TITLE to X_LABEL, same for y (#3948)
Renamed:
- cli options
- dvcfile plot props
- template anchors
- variable names throughout the code
2020-06-03 20:30:17 +03:00
Ruslan Kuprieiev ac4f351daf dvc: require --external for external outputs (#3929)
Fixes #1545
2020-06-03 06:13:09 +03:00
Ruslan Kuprieiev d1e08b6157 dvc: replace pipeline with dag (#3905)
`pipeline list` is no more, it had some very questionable applications
(none to be precise) and was duplicating old `pipeline show` functionality.
We might introduce a different command to assist in listing (e.g. for
shell completion) in the future.

New `dvc dag` replaces `dvc pipeline show` and by-default will show
all pipelines in the project in ASCII (so there is no more --ascii)
and also `--dot` support, just like before. When given a target,
`dvc dag` (in any mode) will show DAG that leads to the target,
skipping the descendants, unless `--full` is specified.
2020-06-01 02:35:36 +03:00
Saugat Pachhai edfa1741db implement removing stage (#3881)
This should allow us to be able to remove a stage from a dvcfile,
(if it's a single stage file, it removes it), and make us able to
delete the overwrite the stage on run as well.

This commit:
* changes `run` `--overwrite-dvcfile` flag to `--overwrite`
* removes prompt in `run` for overwrite and fails hard
* changes `remove`: now it by default removes stage entry and unprotect outs
* `remove` has `--outs` to remove outputs instead of unprotecting them
2020-05-31 17:41:19 +03:00
Alexander SchepanovskiandRuslan Kuprieiev 516d82e411 Add plots props and plots modify params (#3911)
* Add plots props and `plots modify` params

* Update dvc/command/plots.py

Co-authored-by: Ruslan Kuprieiev <[email protected]>

* Update dvc/repo/plots/show.py

Co-authored-by: Ruslan Kuprieiev <[email protected]>

* Update dvc/repo/plots/show.py

Co-authored-by: Ruslan Kuprieiev <[email protected]>

* Update dvc/repo/plots/show.py

Co-authored-by: Ruslan Kuprieiev <[email protected]>

* Update dvc/repo/plots/show.py

Co-authored-by: Ruslan Kuprieiev <[email protected]>

Co-authored-by: Ruslan Kuprieiev <[email protected]>
2020-05-30 14:37:11 +03:00
Ruslan Kuprieiev 2d8c6043ca plots: replace --show-json with --show-vega (#3891)
Fixes #3890
2020-05-28 14:42:41 +03:00
Ruslan Kuprieiev 865d355554 params/metrics: introduce --no-path and --old (#3845)
* metrics: diff: add --no-path

Part of #3690

* params: diff: introduce --no-path

* metrics: diff: introduce --old

Part of #3690
2020-05-22 04:35:42 +03:00
Ruslan Kuprieiev 130b76c7a5 plots: remove --select CLI option (#3840)
* plots: remove --select from CLI

It needs reconsideration, we can't release it as is right now. E.g. it
expects xpath to start with `$`, but that will get interpreted by your
shell, which is bad.

* completion: update plots
2020-05-21 17:57:27 +03:00
Shankho Boron GhoshandRestyled.io 19eaced304 dvc : renamed --outs-only to --dvc-only (#3797)
* Renamed --outs-only to --dvc-only

* Changed outs_only to dvc_only

* replace output_only with dvc_only

* Restyled by black

Co-authored-by: Restyled.io <[email protected]>
2020-05-20 18:24:16 +03:00
Ruslan Kuprieiev 09136f2378 plots: add plot markers to DVC files (#3807)
* run: add --plot/--plot-no-cache

Part of #3409

* plot: move show/diff to API

* plots: show marked plots by default

Involves some refactoring to make plots comply with the rest of the code
base.

* dvc.yaml: use top-level metrics and plots

* dvc.yaml: add support for plot template

* plots: add support for templates in dvc.yaml

* dvc.yaml: allow metrics/plots to have persist/cache

* plots: render single page by-default and introduce --show-json

* plot: use "working tree" instead of "workspace"

Just to sync this with the rest of the codebase. We should consider
renaming it to "workspace" everywhere, but for now I opt to not touch
it to not break something that depends on it.

* plots: rename -f|--file to -o|--out

Better corresponds to other commands like `import`.

* plots: use RepoTree and brancher instead of api

* stage: get rid of OutputParams

* tests: plots: add simple diff test

* plots: use `--targets` instead of `--datafile`

Makes it comply with `dvc metrics/params` CLI options.

* tests: unit: plots: add --show-json test

* stage: cleanup exception for format error

Based on feedback from the users.

* lockfile: use relpath in corruption error
2020-05-20 04:48:53 +03:00
Ruslan Kuprieiev cec4b4e003 dvc: rename plot to plots (#3802)
* dvc: rename plot to plots

Follows `dvc params/metrics` convention and is needed in preparation for new
commands and some refactoring.

Part of #3409

* completion: rename plot -> plots
2020-05-14 22:28:22 +03:00
Ruslan Kuprieiev 974cf097dd run/repro: rename "build cache" -> "run cache" (#3788)
Part of #3777
2020-05-14 02:27:18 +03:00
Saugat PachhaiandRuslan Kuprieiev 666e203bbb params/metrics: diff: implement tabulated markdown output (--show-md) (#3757)
* params/metrics: diff: implement tabulated markdown output

Via `--show-md` on `diff`s.

* table: show None on missing val

* tests: use `dedent`, add tests for markdown

* diff: add --show-md

Co-authored-by: Ruslan Kuprieiev <[email protected]>
2020-05-10 18:39:51 +03:00
nik123 c922da4f3f update: --recursive flag (#3760)
* update: --recursive flag

* refactor: applied isort changes to dvc/repo/update.py

* update: removed default values, check for str

* update: fixed code climate cognitive complexity issues
2020-05-08 23:23:48 +03:00
Ruslan Kuprieiev 785dcfeef0 push/pull: naively transfer run cache (#3746)
This is the most simple (aka dumb) implementation for this
functionality that is needed to unblock CICD development.
2020-05-07 16:55:10 +03:00
Casper da Costa-Luis 2bb7257a06 lint: isort pre-commit & misc improvements (#3749)
* test: clean flake8 config root clutter

* test: pre-commit: add isort

Compatible with black (see https://github.com/timothycrosley/isort/issues/694)

* lint: reorder imports

* lint: more complex imports

* lint: fix deepsource

* config: isort: add first party dvc

* tests: restyled: add isort

* temp commit to revert before merge

* Revert "temp commit to revert before merge"

This reverts commit 11db0fd8e95fe891597cbb9bf804480909b19e24.
2020-05-06 23:56:07 +03:00
Saugat Pachhai e3831066de repro: use dvc.yaml by default (#3747)
Note: This does not change default for `pipeline` as
it cannot show multiple DAGs at the same time. If we
are able to show multiple DAGs, we can just default to
`dvc.yaml`.
2020-05-06 18:33:42 +03:00
Saugat Pachhai d00bd4dfe5 pull/fetch/push: add stats (#3735)
* pull/fetch/push: add stats

* fix typo: s/logging/logger

* pull: make stats detailed, with summary at the bottom

* tests: mock properly, set return_value

* add a line space
2020-05-05 16:10:50 +03:00
Ruslan Kuprieiev 93d7b9173b tests: use --single-stage 2020-05-04 20:23:49 +03:00
Ruslan Kuprieiev 68a0c39ad1 run: remove deprecated -y|--yes (#3737) 2020-05-04 17:51:07 +03:00
Ruslan Kuprieiev 505b88afae diff: make output consistent with other diff commands (#3727)
* diff: make output consistent with other diff commands

Fixes #3435

* tests: plot: fix flaky test
2020-05-04 00:25:55 +03:00
nik123 415a85c6be status: --recursive flag (#3726)
* status: --recursive flag

* tests: fixed test_status_recursive for Windows platform
2020-05-03 21:12:17 +03:00
Paweł RedzyńskiandRuslan Kuprieiev e553511085 Metrics - plotting for multiple revisions initial (#3577)
* init

* rename to plot data insertion basig on dicts update

* revision support

* roll back revision

* plot makedirs for backward compatibility

* log path

* pretty plot link to visualization page

* make target default title

* efiop review

* efiop review

* plot multiple initial

* add some missing metric file tests

* proper id generation

* proper id generation

* add confusion matrix template

* refactor tests

* plot from dvct file

* plot from dvct

* brush up commands

* fix confusion matrix multiple plot

* plot: change confusion matrix data schema

* should be working as intended

* support for src file in dvct files

* minor fixes

* plot: support json templates

* plot: rename confusion template

* plot: polish command behaviour

* fix test for json

* plot: test command

* some minor fixes for tests

* plot: unit test loading

* plot: unit test loading

* plot: handle TODOS

* cleanup

* use mocker

* plot: support tsv

* plot: command refactoring

* plot: fix windows issues with tests

* plot: test: some more windows fixes

* plot: _load_from_revisions complexity fix

* plot: reduce complexity

* plot: complexity reduction

* plot: deepsource suggestions

* plot: move template path evaluation

* fixup

* fixup

* exception on no datafile and no template

* json metric load with OrderedDict

* plot: improve handling non-existing files on revisions

* plot: improve handling non-existing files on revisions

* change default plot path

* some exceptions and fixes

* add yaml metrics support

* fixup

* some more suggestions

* default filename fix

* efiop review requests

* log exception on failur

* move revisions deduction to commands

* json templates

* extract template filling to separate method

* some parsing improvements

* add columns functionality

* extract default data transformation to separate method

* plot: initial support for jsonpath

* plot: rename columns to filters, tests are dict based

* plot: fixups

* plot: refactoring

* repo: plot: convert to package

* plot: data loading refactor, support searching for data

* plot: raise if wrong fields provided

* plot: command description

* plot: default: pass y axis info for default plot

* plot: get rid of fieldnames, expect ordered data

* plot: handle default plot in separate method

* plot: fix default

* plot: command option names fixes

* refactoring

* fixes

* plot: provide option for stdout redirection

* plot: rename show-json to no-html

* plot: add no-csv-header option

* plot: improve error message for wrongly structured metric

* plot: match template name exactly, whit suffix appended only

* plot: dmpetrov and ivan review

* plot: refactor --stdout help message

* plot: move template to repo/plot

* plot: add -x and -y options

* plot: add -x and -y options

* plot: command: order change

* plot: scatter

* plot: rename confusion matrix template, new name generation format

* plot: add title anchor

* plot: review from jorgeorpinel

* plot: rename filter and result options to select and file

* plot: add --title, --x-title, --y-title

* plot: xlab ylab

* Update dvc/repo/plot/template.py

Co-authored-by: Ruslan Kuprieiev <[email protected]>

* Update dvc/repo/plot/template.py

Co-authored-by: Ruslan Kuprieiev <[email protected]>

* efiop review

* plot: bash completion

* plot: static code analysis fixes

Co-authored-by: Ruslan Kuprieiev <[email protected]>
2020-05-01 22:45:03 +03:00
Ruslan Kuprieiev 45944ddde7 metrics: rework metrics implementation (#3658)
Dropping support for all types except json and yaml. No more xpath
support.

Fixes #3572
2020-04-22 13:39:59 +03:00
Saugat Pachhai 128fa7f887 dvc: add a support for multistage dvcfile. (#3584)
Now, pipeline stage files can house multiple stages, and separate lockfiles
are created which has the checksums, whereas Dvcfile will be clean and human
readable and editable. The *.dvc files will be generated for output files.

It is available via a hidden flag: -n.

Fixes #1871
PR: #3584
2020-04-17 22:58:36 +03:00
Ruslan Kuprieiev 8455b7bece params: diff: introduce --all (#3631)
* params: diff: introduce --all

Makes `dvc params diff` also show unchanged params.

* params: diff: show all present parameters
2020-04-15 13:21:24 +03:00
Saugat PachhaiandRuslan Kuprieiev 65854c4946 refactor: extract stage's relationship with Dvcfile out from Stage (#3619)
* refactor stage into dvcfile

* Split create_stage out of dvcfile to Stage::create() and overwrite

* Remove logging from Repo::run

* tests: stop using --remove-outs

Co-authored-by: Ruslan Kuprieiev <[email protected]>
2020-04-12 23:09:29 +03:00
Ruslan Kuprieiev 63fe2893a8 run: remove deprecated --cwd (#3623)
It has been deprecated for a long time now and it significantly
complicates the code, hiding multiple bugs.
2020-04-11 19:57:05 +03:00
Ruslan Kuprieiev 0e854f9534 params: diff: sort table (#3617) 2020-04-09 21:23:18 +03:00
Ruslan Kuprieiev c1ac6bb06b dvc: introduce dvc params diff (#3573)
* params: use repo.tree

* remote: local: use `repo.tree` for `exists()`

* param: handle missing params

* stage: move status warning to debug

* dvc: introduce `dvc params diff`

Fixes #3528
2020-04-09 05:18:49 +03:00
Ruslan Kuprieiev 26980ae45b metrics: diff: fix float precision formatting (#3609)
Texttable will try to detect the column type automatically, which
results in a low precision of the float that it is showing. We need to
disable that auto-formatting and just use `str(val)` instead.
2020-04-07 19:42:25 +03:00
Ruslan Kuprieiev 7bd473371c push/pull/status/metrics: add support for --all-commits (#3587)
First steps for #1691
2020-04-04 19:30:11 +03:00
Ruslan Kuprieiev 8e675a9d42 metrics: diff: don't print "No changes" (#3576)
Makes it easier to use in shell scripts. E.g. `-z $(dvc metrics diff)`, which
has the same semantics as `git diff`. Also syncs up with the behaviour
of `dvc diff`.

Fixes #3469
2020-04-02 04:54:40 +03:00
Ruslan Kuprieiev 0bf6fdae14 metrics: diff: handle deleted/new metric (#3529)
Partial fix for https://github.com/iterative/dvc/issues/3469
2020-03-25 05:23:21 +02:00
Helge Munk JacobsenandRuslan Kuprieiev 28748ff345 introduce hyper parameters and config (#3515)
* Work in progress

* added file parsing and name validation + adjust schema

* Exceptions on bad input

* Support multiple parameters

* Support multi 's in
Having any troubles? Hit us up at https://dvc.org/support, we are always happy to help!

* fix formatting

* dep: param: fix schema

Signed-off-by: Ruslan Kuprieiev <[email protected]>

* run: check if --params is specified

* dvc: rework param handling

* params: fix exc formatting

* params: support basic nested configs

Co-authored-by: Ruslan Kuprieiev <[email protected]>
2020-03-24 17:56:39 +02:00
Saugat Pachhai 1455e9551e pull/checkout: fix empty output if no state gets changed (#3520) 2020-03-24 13:48:06 +02:00
Saugat PachhaiandJorge Orpinel 066ccea733 checkout: show summary by default and introduce --show-changes flag (#3401)
* checkout: implement --show-changes flag to show detailed checkout details
Show summary by default on checkout

checkout: show directory modified even when files are removed from inside it

checkout: refactor template logic

checkout: change output format

checkout: do not show summary if nothing's changed

checkout: do not show summary if show_changes is specified

checkout: show '/' at the end if it's a directory

rename variable name

test: cover stats for checkout

checkout: show relink as not modified

checkout: remove unwanted message during empty checkout

pull: show summary on checkout

import/get: change external_repo to catch CheckoutError

fix tests and check if path is url

checkout: support external deps/outputs

tests: checkout on external outputs

* fix tests

* checkout: make show changes default and introduce summary flag to show summary

* address suggestions

* exceptions: remove extra spacing on erorr

* Update dvc/command/checkout.py

Co-Authored-By: Jorge Orpinel <[email protected]>

Co-authored-by: Jorge Orpinel <[email protected]>
2020-03-16 16:29:36 +02:00
Saugat Pachhai d2734dfe1e tests: remove use of mocker as context-manager (#3480) 2020-03-16 08:25:22 +05:45
Guro Bokum 02cd520acd api: colorize dvc list (#3351)
Close #3347
2020-03-09 14:07:23 +02:00
Ivan Shcheklein eebbf3f812 change diff checksum arg name to hash (#3384) 2020-02-23 06:32:35 +02:00
Saugat Pachhai 46e5053705 update: support specifying revision when updating (#3337)
* update: work with rev

* completion: update --rev completion scripts

* test: fix unit test assumption

* test: use fspath_py35
2020-02-15 17:55:41 +02:00
Guro Bokum 7e6e8ee169 api: add list command (#3246)
Close #2509
2020-02-12 22:10:48 +02:00
Ruslan Kuprieiev 0c8897949e diff: use rev instead of ref (#3299)
Fixes #3245
2020-02-11 00:13:23 +02:00
Mr. Outisand@dmpetrov e5145e6c55 diff: format summary to make it more human readable
Co-authored-by: @dmpetrov
2020-01-30 13:15:49 -06:00
Mr. Outis 793a069644 tests/diff: order dictionary (second try) 2020-01-30 10:00:56 -06:00
Mr. Outis e9bd9599a2 tests/diff: dont care about sorted jsons 2020-01-30 09:26:35 -06:00
Mr. Outis e501549bd7 diff: add a summary at the bottom 2020-01-29 18:54:45 -06:00