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This should allow us to be able to remove a stage from a dvcfile, (if it's a single stage file, it removes it), and make us able to delete the overwrite the stage on run as well. This commit: * changes `run` `--overwrite-dvcfile` flag to `--overwrite` * removes prompt in `run` for overwrite and fails hard * changes `remove`: now it by default removes stage entry and unprotect outs * `remove` has `--outs` to remove outputs instead of unprotecting them