mirror of
https://github.com/Stone-Red-Code/dvc.git
synced 2026-11-02 07:18:25 +01:00
Refactoring: DataFileObj to DvcPath and DataPath
This commit is contained in:
+10
-1
@@ -4,6 +4,8 @@ import os
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from dvc.git_wrapper import GitWrapper
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from dvc.config import Config, ConfigError
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from dvc.logger import Logger
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from dvc.path_factory import PathFactory
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from dvc.utils import cached_property
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class CmdBase(object):
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@@ -30,10 +32,17 @@ class CmdBase(object):
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raise ConfigError("DVC_HOME directory doesn't exists")
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pass
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@cached_property
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def path_factory(self):
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return PathFactory(self.git, self.config)
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@property
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def config(self):
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return self._config
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def cache_file_aws_key(self, file):
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return '{}/{}'.format(self._config.aws_storage_prefix, file).strip('/')
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@property
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def lnx_home(self):
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return self._dvc_home
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@@ -46,7 +55,7 @@ class CmdBase(object):
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def git(self):
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return self._git
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def define_args(self):
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def define_args(self, parser):
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pass
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def set_skip_git_actions(self, parser):
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+14
-15
@@ -8,7 +8,6 @@ import requests
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from dvc.cmd_base import CmdBase
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from dvc.cmd_data_sync import sizeof_fmt
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from dvc.logger import Logger
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from dvc.data_file_obj import DataFileObj
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from dvc.exceptions import NeatLynxException
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from dvc.state_file import StateFile
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@@ -72,40 +71,40 @@ class CmdDataImport(CmdBase):
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if os.path.isdir(output):
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output = os.path.join(output, os.path.basename(input))
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dobj = DataFileObj(output, self.git, self.config)
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data_path = self.path_factory.data_path(output)
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if os.path.exists(dobj.data_file_relative):
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raise DataImportError('Output file "{}" already exists'.format(dobj.data_file_relative))
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if not os.path.isdir(os.path.dirname(dobj.data_file_abs)):
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if os.path.exists(data_path.data.relative):
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raise DataImportError('Output file "{}" already exists'.format(data_path.data.relative))
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if not os.path.isdir(os.path.dirname(data_path.data.relative)):
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raise DataImportError('Output file directory "{}" does not exists'.format(
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os.path.dirname(dobj.data_file_relative)))
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os.path.dirname(data_path.data.relative)))
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cache_dir = os.path.dirname(dobj.cache_file_relative)
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cache_dir = os.path.dirname(data_path.cache.relative)
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if not os.path.exists(cache_dir):
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os.makedirs(cache_dir)
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if CmdDataImport.is_url(input):
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Logger.debug('Downloading file {} ...'.format(input))
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self.download_file(input, dobj.cache_file_relative)
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self.download_file(input, data_path.cache.relative)
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Logger.debug('Input file "{}" was downloaded to cache "{}"'.format(
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input, dobj.cache_file_relative))
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input, data_path.cache.relative))
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else:
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copyfile(input, dobj.cache_file_relative)
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copyfile(input, data_path.cache.relative)
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Logger.debug('Input file "{}" was copied to cache "{}"'.format(
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input, dobj.cache_file_relative))
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input, data_path.cache.relative))
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dobj.create_symlink()
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data_path.create_symlink()
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Logger.debug('Symlink from data file "{}" to the cache file "{}" was created'.
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format(dobj.data_file_relative, dobj.cache_file_relative))
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format(data_path.data.relative, data_path.cache.relative))
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state_file = StateFile(dobj.state_file_relative,
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state_file = StateFile(data_path.state.relative,
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self.git,
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[input],
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[output],
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[],
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is_reproducible)
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state_file.save()
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Logger.debug('State file "{}" was created'.format(dobj.state_file_relative))
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Logger.debug('State file "{}" was created'.format(data_path.state.relative))
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pass
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URL_REGEX = re.compile(
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+18
-14
@@ -5,7 +5,6 @@ import fasteners
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from dvc.cmd_base import CmdBase
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from dvc.logger import Logger
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from dvc.exceptions import NeatLynxException
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from dvc.data_file_obj import DataFileObjExisting
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class DataRemoveError(NeatLynxException):
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@@ -59,27 +58,32 @@ class CmdDataRemove(CmdBase):
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raise DataRemoveError('data directory cannot be removed')
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return self.remove_dir(target)
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dobj = DataFileObjExisting(target, self.git, self.config)
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if os.path.islink(dobj.data_file_relative):
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return self.remove_symlink(dobj.data_file_relative)
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data_path = self.path_factory.existing_data_path(target)
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if os.path.islink(data_path.data.relative):
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return self.remove_symlink(data_path)
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raise DataRemoveError('Cannot remove a regular file "{}"'.format(target))
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def remove_symlink(self, file):
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dobj = DataFileObjExisting(file, self.git, self.config)
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@staticmethod
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def remove_dir_if_empty(file):
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dir = os.path.dirname(file)
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if dir != '' and not os.listdir(dir):
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os.rmdir(dir)
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if os.path.isfile(dobj.cache_file_relative):
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os.remove(dobj.cache_file_relative)
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dobj.remove_cache_dir_if_empty()
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def remove_symlink(self, data_path):
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if os.path.isfile(data_path.cache.relative):
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os.remove(data_path.cache.relative)
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self.remove_dir_if_empty(data_path.cache.relavive)
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if os.path.isfile(dobj.state_file_relative):
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os.remove(dobj.state_file_relative)
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dobj.remove_state_dir_if_empty()
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if os.path.isfile(data_path.state.relative):
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os.remove(data_path.state.relative)
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self.remove_dir_if_empty(data_path.state.relative)
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if self.args.remove_from_cloud:
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self.remove_from_cloud(dobj.cache_file_aws_key)
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self.remove_from_cloud(data_path.cache_file_aws_key)
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os.remove(file)
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os.remove(data_path.data.relative)
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pass
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def remove_from_cloud(self, aws_file_name):
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+21
-20
@@ -5,7 +5,6 @@ from boto.s3.connection import S3Connection
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from dvc.cmd_base import CmdBase
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from dvc.logger import Logger
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from dvc.data_file_obj import DataFileObjExisting
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from dvc.exceptions import NeatLynxException
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@@ -53,8 +52,8 @@ class CmdDataSync(CmdBase):
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def run(self):
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if os.path.islink(self.args.target):
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dobj = DataFileObjExisting(self.args.target, self.git, self.config)
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return self.sync_symlink(dobj)
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data_path = self.path_factory.existing_data_path(self.args.target)
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return self.sync_symlink(data_path)
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if os.path.isdir(self.args.target):
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return self.sync_dir(self.args.target)
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@@ -67,46 +66,48 @@ class CmdDataSync(CmdBase):
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if os.path.isdir(fname):
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self.sync_dir(fname)
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elif os.path.islink(fname):
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self.sync_symlink(DataFileObjExisting(fname, self.git, self.config))
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self.sync_symlink(self.path_factory.existing_data_path(fname))
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else:
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raise DataSyncError('Unsupported file type "{}"'.format(fname))
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pass
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def sync_symlink(self, dobj):
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if os.path.isfile(dobj.cache_file_relative):
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self.sync_to_cloud(dobj)
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def sync_symlink(self, data_path):
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if os.path.isfile(data_path.cache.relative):
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self.sync_to_cloud(data_path)
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else:
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self.sync_from_cloud(dobj)
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self.sync_from_cloud(data_path)
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pass
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def sync_from_cloud(self, dobj):
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key = self._bucket.get_key(dobj.cache_file_aws_key)
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def sync_from_cloud(self, data_path):
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aws_key = self.cache_file_aws_key(data_path.cache.dvc)
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key = self._bucket.get_key(aws_key)
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if not key:
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raise DataSyncError('File "{}" does not exist in the cloud'.format(dobj.cache_file_aws_key))
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raise DataSyncError('File "{}" does not exist in the cloud'.format(aws_key))
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Logger.printing('Downloading cache file from S3 "{}/{}"'.format(self._bucket.name,
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dobj.cache_file_aws_key))
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key.get_contents_to_filename(dobj.cache_file_relative, cb=percent_cb)
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aws_key))
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key.get_contents_to_filename(data_path.cache.relative, cb=percent_cb)
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Logger.printing('Downloading completed')
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pass
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def sync_to_cloud(self, dobj):
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key = self._bucket.get_key(dobj.cache_file_aws_key)
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def sync_to_cloud(self, data_path):
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aws_key = self.cache_file_aws_key(data_path.cache.dvc)
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key = self._bucket.get_key(aws_key)
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if key:
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Logger.debug('File already uploaded to the cloud. Checksum validation...')
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md5_cloud = key.etag[1:-1]
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md5_local = file_md5(dobj.cache_file_relative)
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md5_local = file_md5(data_path.cache.relative)
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if md5_cloud == md5_local:
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Logger.debug('File checksum matches. No uploading is needed.')
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return
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Logger.printing('Checksum miss-match. Re-uploading is required.')
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Logger.printing('Uploading cache file "{}" to S3 "{}"'.format(dobj.cache_file_relative,
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dobj.cache_file_aws_key))
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key = self._bucket.new_key(dobj.cache_file_aws_key)
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key.set_contents_from_filename(dobj.cache_file_relative, cb=percent_cb)
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Logger.printing('Uploading cache file "{}" to S3 "{}"'.format(data_path.cache.relative,
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aws_key))
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key = self._bucket.new_key(aws_key)
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key.set_contents_from_filename(data_path.cache.relative, cb=percent_cb)
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Logger.printing('Uploading completed')
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pass
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+22
-23
@@ -4,10 +4,9 @@ import fasteners
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from dvc.cmd_base import CmdBase
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from dvc.cmd_run import CmdRun
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from dvc.git_wrapper import GitWrapper
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from dvc.logger import Logger
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from dvc.exceptions import NeatLynxException
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from dvc.data_file_obj import DataFileObj, NotInDataDirError
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from dvc.data_file_obj import NotInDataDirError
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from dvc.state_file import StateFile
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@@ -55,29 +54,29 @@ class CmdRepro(CmdRun):
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if not self.skip_git_actions and not self.git.is_ready_to_go():
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return 1
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dobjs, externally_created_files = DataFileObj.files_to_dobjs(self.args.target, self.git, self.config)
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if externally_created_files:
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data_path_list, external_files = self.path_factory.to_data_path(self.args.target)
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if external_files:
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Logger.error('Files from outside of the data directory "{}" could not be reproduced: {}'.
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format(self.config.data_dir, ' '.join(externally_created_files)))
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format(self.config.data_dir, ' '.join(external_files)))
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return 1
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error = False
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changed = False
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for dobj in dobjs:
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for data_path in data_path_list:
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try:
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repro_change = ReproChange(dobj, self.git, self)
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repro_change = ReproChange(data_path, self)
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if repro_change.reproduce():
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changed = True
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Logger.info(u'Data file "{}" was reproduced.'.format(
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dobj.data_file_relative
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data_path.data.relative
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))
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else:
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Logger.info(u'Reproduction is not required for data file "{}".'.format(
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dobj.data_file_relative
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data_path.data.relative
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))
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except ReproError as err:
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Logger.error('Error in reproducing data file {}: {}'.format(
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dobj.data_file_relative, str(err)
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data_path.data.relative, str(err)
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))
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error = True
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break
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@@ -100,11 +99,11 @@ class CmdRepro(CmdRun):
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class ReproChange(object):
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def __init__(self, dobj, git, cmd_obj):
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self._dobj = dobj
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self._state = StateFile.load(dobj.state_file_relative, git)
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self.git = git
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def __init__(self, data_path, cmd_obj):
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self._data_path = data_path
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self.git = cmd_obj.git
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self._cmd_obj = cmd_obj
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self._state = StateFile.load(data_path.state.relative, self.git)
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cmd_obj._code = self._state.code_sources # HACK!!!
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@@ -112,7 +111,7 @@ class ReproChange(object):
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if not argv:
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raise ReproError('Error: parameter {} is nor defined in state file "{}"'.
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format(StateFile.PARAM_NORM_ARGV, dobj.state_file_relative))
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format(StateFile.PARAM_NORM_ARGV, data_path.state.relative))
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if len(argv) < 2:
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raise ReproError('Error: reproducible command in state file "{}" is too short'.
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format(self._state.file))
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@@ -129,39 +128,39 @@ class ReproChange(object):
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def reproduce_data_file(self):
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Logger.debug('Reproducing data file "{}". Removing the file...'.format(
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self._dobj.data_file_relative))
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os.remove(self._dobj.data_file_relative)
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self._data_path.data.relative))
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os.remove(self._data_path.data.relative)
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Logger.debug('Reproducing data file "{}". Re-runs command: {}'.format(
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self._dobj.data_file_relative, ' '.join(self._repro_argv)))
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self._data_path.data.relative, ' '.join(self._repro_argv)))
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return self._cmd_obj.run_command(self._repro_argv)
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def reproduce(self, force=False):
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were_input_files_changed = False
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if not self._state.is_reproducible:
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Logger.debug('Data file "{}" is not reproducible'.format(self._dobj.data_file_relative))
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Logger.debug('Data file "{}" is not reproducible'.format(self._data_path.data.relative))
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return False
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for input_file in self._state.input_files:
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try:
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dobj = DataFileObj(input_file, self.git, self._cmd_obj.config)
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data_path = self._cmd_obj.path_factory.data_path(input_file)
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except NotInDataDirError:
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raise ReproError(u'The dependency files "{}" is not a data file'.format(input_file))
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except Exception as ex:
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raise ReproError(u'The dependency files "{}" can not be reproduced: {}'.format(
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input_file, ex))
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change = ReproChange(dobj, self.git, self._cmd_obj)
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change = ReproChange(data_path, self._cmd_obj)
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if change.reproduce(force):
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were_input_files_changed = True
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was_source_code_changed = self.git.were_files_changed(self._dobj.data_file_relative,
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was_source_code_changed = self.git.were_files_changed(self._data_path.data.relative,
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self._state.code_sources)
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if not force and not was_source_code_changed and not were_input_files_changed:
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Logger.debug('Data file "{}" is up to date'.format(
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self._dobj.data_file_relative))
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self._data_path.data.relative))
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return False
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return self.reproduce_data_file()
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+10
-10
@@ -2,7 +2,7 @@ import os
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import shutil
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import fasteners
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from dvc.data_file_obj import DataFileObj, NotInDataDirError
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from dvc.data_file_obj import NotInDataDirError
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from dvc.git_wrapper import GitWrapper
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from dvc.cmd_base import CmdBase
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from dvc.logger import Logger
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@@ -77,7 +77,7 @@ class CmdRun(CmdBase):
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return 0
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def run_command(self, argv, stdout=None, stderr=None):
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repo_change = RepositoryChange(argv, stdout, stderr, self.git, self.config)
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repo_change = RepositoryChange(argv, stdout, stderr, self.git, self.config, self.path_factory)
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# print('===== new_files={}'.format(repo_change.new_files))
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# print('===== modified_files={}'.format(repo_change.modified_files))
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@@ -96,21 +96,21 @@ class CmdRun(CmdBase):
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input_files_from_args = list(set(args_files_nlx) - set(changed_files_nlx))
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input_files = self.git.abs_paths_to_nlx(input_files_from_args + self.declaration_input_files)
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for dobj in repo_change.dobj_for_changed_files:
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dirname = os.path.dirname(dobj.cache_file_relative)
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for data_path in repo_change.data_paths_for_changed_files:
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dirname = os.path.dirname(data_path.cache.relative)
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if not os.path.isdir(dirname):
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os.makedirs(dirname)
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Logger.debug('Move output file "{}" to cache dir "{}" and create a symlink'.format(
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dobj.data_file_relative, dobj.cache_file_relative))
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shutil.move(dobj.data_file_relative, dobj.cache_file_relative)
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data_path.data.relative, data_path.cache.relative))
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shutil.move(data_path.data.relative, data_path.cache.relative)
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dobj.create_symlink()
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data_path.create_symlink()
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nlx_code_sources = map(lambda x: self.git.abs_paths_to_nlx([x])[0], self.code)
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Logger.debug('Create state file "{}"'.format(dobj.state_file_relative))
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state_file = StateFile(dobj.state_file_relative, self.git,
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Logger.debug('Create state file "{}"'.format(data_path.state.relative))
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state_file = StateFile(data_path.state.relative, self.git,
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input_files,
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output_files,
|
||||
nlx_code_sources,
|
||||
@@ -165,7 +165,7 @@ class CmdRun(CmdBase):
|
||||
for arg in argv:
|
||||
try:
|
||||
if os.path.isfile(arg):
|
||||
DataFileObj(arg, self.git, self.config)
|
||||
self.path_factory.data_path(arg)
|
||||
result.append(arg)
|
||||
except NotInDataDirError:
|
||||
pass
|
||||
|
||||
+38
-116
@@ -1,6 +1,8 @@
|
||||
import os
|
||||
|
||||
from dvc.dvc_path import DvcPath
|
||||
from dvc.exceptions import NeatLynxException
|
||||
from dvc.utils import cached_property
|
||||
|
||||
|
||||
class DataFilePathError(NeatLynxException):
|
||||
@@ -15,135 +17,55 @@ class NotInDataDirError(NeatLynxException):
|
||||
format(file, data_dir))
|
||||
|
||||
|
||||
class DataFileObj(object):
|
||||
class DataPath(object):
|
||||
STATE_FILE_SUFFIX = '.state'
|
||||
CACHE_FILE_SEP = '_'
|
||||
|
||||
def __init__(self, data_file, git, config):
|
||||
'''
|
||||
nlx file name - system file name without data/cache/state prefix
|
||||
'''
|
||||
def __init__(self, data_file, git, config, cache_file=None):
|
||||
self._git = git
|
||||
self._config = config
|
||||
self._curr_dir_abs = os.path.realpath(os.curdir)
|
||||
self._cache_file = cache_file
|
||||
|
||||
self._data_file = data_file
|
||||
self._data = DvcPath(data_file, git)
|
||||
if not self._data.abs.startswith(self.data_dir_abs):
|
||||
raise NotInDataDirError(data_file, self._config.data_dir)
|
||||
|
||||
if not self.data_file_abs.startswith(self.data_dir_abs):
|
||||
raise NotInDataDirError(self._data_file, self._config.data_dir)
|
||||
if not self._data.dvc.startswith(self._config.data_dir):
|
||||
raise NotInDataDirError(data_file, self._config.data_dir)
|
||||
pass
|
||||
|
||||
def create_symlink(self):
|
||||
data_dir = os.path.dirname(self.data_file_relative)
|
||||
cache_relative_to_data_dir = os.path.relpath(self.cache_file_relative, data_dir)
|
||||
os.symlink(cache_relative_to_data_dir, self.data_file_relative)
|
||||
@property
|
||||
def data(self):
|
||||
return self._data
|
||||
|
||||
@property
|
||||
def data_dvc_short(self):
|
||||
return self._data.dvc[len(self._config.data_dir)+1:]
|
||||
|
||||
@cached_property
|
||||
def state(self):
|
||||
state_dir = os.path.join(self._git.git_dir_abs, self._config.state_dir)
|
||||
state_file = os.path.join(state_dir, self.data_dvc_short + self.STATE_FILE_SUFFIX)
|
||||
return DvcPath(state_file, self._git)
|
||||
|
||||
@cached_property
|
||||
def cache(self):
|
||||
if self._cache_file:
|
||||
return DvcPath(self._cache_file, self._git)
|
||||
else:
|
||||
cache_dir = os.path.join(self._git.git_dir_abs, self._config.cache_dir)
|
||||
cache_file_suffix = self.CACHE_FILE_SEP + self._git.curr_commit
|
||||
cache_file = os.path.join(cache_dir, self.data_dvc_short + cache_file_suffix)
|
||||
return DvcPath(cache_file, self._git)
|
||||
|
||||
@cached_property
|
||||
def data_dir_abs(self):
|
||||
return os.path.join(self._git.git_dir_abs, self._config.data_dir)
|
||||
|
||||
# Data file properties
|
||||
@property
|
||||
def data_file_name(self):
|
||||
return os.path.basename(self._data_file)
|
||||
def _symlink_file(self):
|
||||
data_file_dir = os.path.dirname(self.data.relative)
|
||||
return os.path.relpath(self.cache.relative, data_file_dir)
|
||||
|
||||
@property
|
||||
def data_file_nlx(self):
|
||||
return os.path.relpath(self.data_file_abs, self.data_dir_abs)
|
||||
|
||||
# @property
|
||||
# def data_file_abs(self):
|
||||
# return os.path.realpath(self.data_file_relative)
|
||||
|
||||
@property
|
||||
def data_file_abs(self):
|
||||
'''Do not fully resolve file name since it is a link'''
|
||||
return os.path.abspath(self.data_file_relative)
|
||||
|
||||
@property
|
||||
def data_file_relative(self):
|
||||
return self._data_file
|
||||
|
||||
# Cache file properties
|
||||
@property
|
||||
def cache_file_name(self):
|
||||
if not self._git.curr_commit:
|
||||
return None
|
||||
return self.data_file_name + self.CACHE_FILE_SEP + self._git.curr_commit
|
||||
|
||||
@property
|
||||
def cache_file_nlx(self):
|
||||
if not self._git.curr_commit:
|
||||
return None
|
||||
return self.data_file_nlx + self.CACHE_FILE_SEP + self._git.curr_commit
|
||||
|
||||
@property
|
||||
def cache_file_aws_key(self):
|
||||
return '{}/{}'.format(self._config.aws_storage_prefix, self.cache_file_nlx).strip('/')
|
||||
|
||||
@property
|
||||
def cache_file_abs(self):
|
||||
return os.path.join(self._git.git_dir_abs, self._config.cache_dir, self.cache_file_nlx)
|
||||
|
||||
@property
|
||||
def cache_file_relative(self):
|
||||
return os.path.relpath(self.cache_file_abs, self._curr_dir_abs)
|
||||
|
||||
# State file properties
|
||||
@property
|
||||
def state_file_name(self):
|
||||
return self.data_file_name + self.STATE_FILE_SUFFIX
|
||||
|
||||
@property
|
||||
def state_file_nlx(self):
|
||||
return self.data_file_nlx + self.STATE_FILE_SUFFIX
|
||||
|
||||
@property
|
||||
def state_file_abs(self):
|
||||
return os.path.join(self._git.git_dir_abs, self._config.state_dir, self.state_file_nlx)
|
||||
|
||||
@property
|
||||
def state_file_relative(self):
|
||||
return os.path.relpath(self.state_file_abs, self._curr_dir_abs)
|
||||
|
||||
@staticmethod
|
||||
def files_to_dobjs(files, git, config):
|
||||
result = []
|
||||
externally_created_files = []
|
||||
|
||||
for file in files:
|
||||
try:
|
||||
result.append(DataFileObj(file, git, config))
|
||||
except NotInDataDirError:
|
||||
externally_created_files.append(file)
|
||||
|
||||
return result, externally_created_files
|
||||
|
||||
|
||||
class DataFileObjExisting(DataFileObj):
|
||||
def __init__(self, data_file, git, config):
|
||||
DataFileObj.__init__(self, data_file, git, config)
|
||||
|
||||
if not os.path.islink(data_file):
|
||||
raise DataFilePathError('Data file must be a symbolic link')
|
||||
pass
|
||||
|
||||
@property
|
||||
def cache_file_name(self):
|
||||
return os.path.basename(self.cache_file_abs)
|
||||
|
||||
@property
|
||||
def cache_file_abs(self):
|
||||
return os.path.realpath(self.data_file_relative)
|
||||
|
||||
@staticmethod
|
||||
def remove_dir_if_empty(dir):
|
||||
cache_file_dir = os.path.dirname(dir)
|
||||
if cache_file_dir != '' and not os.listdir(cache_file_dir):
|
||||
os.rmdir(cache_file_dir)
|
||||
|
||||
def remove_state_dir_if_empty(self):
|
||||
self.remove_dir_if_empty(self.state_file_relative)
|
||||
|
||||
def remove_cache_dir_if_empty(self):
|
||||
self.remove_dir_if_empty(self.cache_file_relative)
|
||||
def create_symlink(self):
|
||||
os.symlink(self._symlink_file, self.data.relative)
|
||||
|
||||
+4
-4
@@ -2,10 +2,10 @@ import os
|
||||
|
||||
|
||||
class DvcPath(object):
|
||||
def __init__(self, relative_raw, git_dir_abs, curr_dir_abs):
|
||||
self._abs = os.path.realpath(relative_raw)
|
||||
self._dvc = os.path.relpath(self.abs, git_dir_abs)
|
||||
self._relative = os.path.relpath(self._abs, curr_dir_abs)
|
||||
def __init__(self, relative_raw, git):
|
||||
self._abs = os.path.abspath(relative_raw)
|
||||
self._dvc = os.path.relpath(self.abs, git.git_dir_abs)
|
||||
self._relative = os.path.relpath(self._abs, git.curr_dir_abs)
|
||||
self._filename = os.path.basename(self._abs)
|
||||
|
||||
@property
|
||||
|
||||
@@ -0,0 +1,36 @@
|
||||
import os
|
||||
|
||||
from dvc.data_file_obj import DataPath, DataFilePathError, NotInDataDirError
|
||||
from dvc.dvc_path import DvcPath
|
||||
|
||||
|
||||
class PathFactory(object):
|
||||
def __init__(self, git, config):
|
||||
self._git = git
|
||||
self._config = config
|
||||
self._curr_dir_abs = os.path.realpath(os.curdir)
|
||||
|
||||
def path(self, relative_raw):
|
||||
return DvcPath(relative_raw, self._git)
|
||||
|
||||
def data_path(self, data_file):
|
||||
return DataPath(data_file, self._git, self._config)
|
||||
|
||||
def existing_data_path(self, data_file):
|
||||
if not os.path.islink(data_file):
|
||||
raise DataFilePathError(u'Data file "%s" must be a symbolic link' % data_file)
|
||||
resolved_symlink = os.path.realpath(data_file)
|
||||
return DataPath(data_file, self._git, self._config, resolved_symlink)
|
||||
|
||||
def to_data_path(self, files):
|
||||
result = []
|
||||
externally_created_files = []
|
||||
|
||||
for file in files:
|
||||
try:
|
||||
data_path = DataPath(file, self._git, self._config)
|
||||
result.append(data_path)
|
||||
except NotInDataDirError:
|
||||
externally_created_files.append(file)
|
||||
|
||||
return result, externally_created_files
|
||||
@@ -1,6 +1,5 @@
|
||||
import os
|
||||
|
||||
from dvc.data_file_obj import DataFileObj, NotInDataDirError
|
||||
from dvc.exceptions import NeatLynxException
|
||||
from dvc.git_wrapper import GitWrapper
|
||||
|
||||
@@ -44,18 +43,18 @@ class FileModificationState(object):
|
||||
class RepositoryChange(object):
|
||||
"""Pre-condition: git repository has no changes"""
|
||||
|
||||
def __init__(self, args, stdout, stderr, git, config):
|
||||
def __init__(self, args, stdout, stderr, git, config, path_factory):
|
||||
self.git = git
|
||||
self.config = config
|
||||
self.path_factory = path_factory
|
||||
|
||||
GitWrapper.exec_cmd_only_success(args, stdout, stderr)
|
||||
self._file_states = self._get_file_states()
|
||||
|
||||
self._changed_dobj, self._externally_created_files = DataFileObj.files_to_dobjs(
|
||||
self.changed_files, self.git, self.config)
|
||||
self._changed_data_paths, self._externally_created_files = path_factory.to_data_path(self.changed_files)
|
||||
|
||||
@staticmethod
|
||||
def exec_cmd(args, stdout, stderr, git):
|
||||
def exec_cmd(args, stdout, stderr, git, path_factory):
|
||||
return RepositoryChange(args, stdout, stderr, git)
|
||||
|
||||
@staticmethod
|
||||
@@ -113,8 +112,8 @@ class RepositoryChange(object):
|
||||
pass
|
||||
|
||||
@property
|
||||
def dobj_for_changed_files(self):
|
||||
return self._changed_dobj
|
||||
def data_paths_for_changed_files(self):
|
||||
return self._changed_data_paths
|
||||
|
||||
@property
|
||||
def externally_created_files(self):
|
||||
|
||||
@@ -4,8 +4,6 @@ import json
|
||||
import time
|
||||
|
||||
from dvc.exceptions import NeatLynxException
|
||||
from dvc.git_wrapper import GitWrapper
|
||||
from dvc.logger import Logger
|
||||
|
||||
|
||||
class StateFileError(NeatLynxException):
|
||||
|
||||
@@ -0,0 +1,14 @@
|
||||
|
||||
def cached_property(f):
|
||||
def get(self):
|
||||
try:
|
||||
return self._property_cache[f]
|
||||
except AttributeError:
|
||||
self._property_cache = {}
|
||||
x = self._property_cache[f] = f(self)
|
||||
return x
|
||||
except KeyError:
|
||||
x = self._property_cache[f] = f(self)
|
||||
return x
|
||||
|
||||
return property(get)
|
||||
+76
-25
@@ -3,14 +3,16 @@ import os
|
||||
import shutil
|
||||
|
||||
from dvc.config import ConfigI
|
||||
from dvc.data_file_obj import DataFileObj, NotInDataDirError, DataFilePathError
|
||||
from dvc.data_file_obj import NotInDataDirError, DataFilePathError, DataPath
|
||||
from dvc.git_wrapper import GitWrapperI
|
||||
from dvc.path_factory import PathFactory
|
||||
|
||||
|
||||
class BasicDataDirTest(TestCase):
|
||||
def setUp(self, test_dir, curr_dir=None):
|
||||
self._test_dir = os.path.realpath(test_dir)
|
||||
self._test_git_dir = os.path.join(self._test_dir, 'proj')
|
||||
self._proj_dir = 'proj'
|
||||
self._test_git_dir = os.path.join(self._test_dir, self._proj_dir)
|
||||
self._old_curr_dir_abs = os.path.realpath(os.curdir)
|
||||
|
||||
shutil.rmtree(self._test_dir, ignore_errors=True)
|
||||
@@ -26,6 +28,10 @@ class BasicDataDirTest(TestCase):
|
||||
if not os.path.isdir(self._test_git_dir):
|
||||
os.makedirs(self._test_git_dir)
|
||||
|
||||
data_dir = os.path.join(self._test_git_dir, 'data')
|
||||
if not os.path.isdir(data_dir):
|
||||
os.makedirs(data_dir)
|
||||
|
||||
os.chdir(self._curr_dir)
|
||||
|
||||
def tearDown(self):
|
||||
@@ -40,56 +46,98 @@ class TestDataFileObjBasic(BasicDataDirTest):
|
||||
git = GitWrapperI(git_dir=self._test_git_dir, commit='ad45ba8')
|
||||
config = ConfigI('data', 'cache', 'state')
|
||||
|
||||
self._dobj = DataFileObj(os.path.join('data', 'file.txt'), git, config)
|
||||
file = os.path.join('data', 'file.txt')
|
||||
self._data_path = DataPath(file, git, config)
|
||||
pass
|
||||
|
||||
def test_data_file(self):
|
||||
self.assertEqual(self._dobj.data_file_abs, os.path.join(self._test_git_dir, 'data', 'file.txt'))
|
||||
data_file_full_path = os.path.join(self._test_git_dir, 'data', 'file.txt')
|
||||
self.assertEqual(self._data_path.data.abs, data_file_full_path)
|
||||
|
||||
def test_cache_file(self):
|
||||
self.assertEqual(self._dobj.cache_file_abs, os.path.join(self._test_git_dir, 'cache', 'file.txt_ad45ba8'))
|
||||
cache_file_full_path = os.path.join(self._test_git_dir, 'cache', 'file.txt_ad45ba8')
|
||||
self.assertEqual(self._data_path.cache.abs, cache_file_full_path)
|
||||
|
||||
def test_state_file(self):
|
||||
self.assertEqual(self._dobj.state_file_abs, os.path.join(self._test_git_dir, 'state', 'file.txt.state'))
|
||||
state_file_full_path = os.path.join(self._test_git_dir, 'state', 'file.txt.state')
|
||||
self.assertEqual(self._data_path.state.abs, state_file_full_path)
|
||||
|
||||
def test_data_dvs_short(self):
|
||||
self.assertEqual(self._data_path.data_dvc_short, 'file.txt')
|
||||
pass
|
||||
|
||||
|
||||
class TestNlxNames(BasicDataDirTest):
|
||||
class TestPathFactory(BasicDataDirTest):
|
||||
def setUp(self):
|
||||
BasicDataDirTest.setUp(self, test_dir=os.path.join(os.path.sep, 'tmp', 'ntx_unit_test'))
|
||||
|
||||
git = GitWrapperI(git_dir=self._test_git_dir, commit='ad45ba8')
|
||||
config = ConfigI('data', 'cache', 'state')
|
||||
self.path_factory = PathFactory(git, config)
|
||||
|
||||
self._dobj = DataFileObj(os.path.join('data', 'file.txt'), git, config)
|
||||
self.file = os.path.join('data', 'file.txt')
|
||||
|
||||
fd = open(self.file, 'w+')
|
||||
fd.write('some text')
|
||||
fd.close()
|
||||
|
||||
self.file_symlink = os.path.join('data', 'fsymlinc.txt')
|
||||
os.chdir('data')
|
||||
os.symlink('file.txt', 'fsymlinc.txt')
|
||||
os.chdir('..')
|
||||
pass
|
||||
|
||||
def test_data_nlx(self):
|
||||
print('==============================')
|
||||
self.assertEqual(self._dobj.data_file_nlx, 'file.txt')
|
||||
def test_data_file_factory(self):
|
||||
data_path = self.path_factory.data_path(self.file)
|
||||
self.assertEqual(data_path.data.dvc, self.file)
|
||||
|
||||
indirect_file_path = os.path.join('..', self._proj_dir, self.file)
|
||||
data_path_indirect = self.path_factory.data_path(indirect_file_path)
|
||||
self.assertEqual(data_path_indirect.data.dvc, self.file)
|
||||
pass
|
||||
|
||||
def test_data_symlink_factory(self):
|
||||
data_path = self.path_factory.existing_data_path(self.file_symlink)
|
||||
self.assertEqual(data_path.data.dvc, self.file_symlink)
|
||||
pass
|
||||
|
||||
def test_data_symlink_factory_cache(self):
|
||||
data_path = self.path_factory.existing_data_path(self.file_symlink)
|
||||
self.assertEqual(data_path.cache.dvc, self.file)
|
||||
pass
|
||||
|
||||
def test_data_symlink_factory_exception(self):
|
||||
with self.assertRaises(DataFilePathError):
|
||||
self.path_factory.existing_data_path(self.file)
|
||||
pass
|
||||
|
||||
|
||||
class TestDataFileObjInDataDir(BasicDataDirTest):
|
||||
class TestDataPathInDataDir(BasicDataDirTest):
|
||||
def setUp(self):
|
||||
BasicDataDirTest.setUp(self, os.path.join(os.path.sep, 'tmp', 'ntx_unit_test'))
|
||||
|
||||
git = GitWrapperI(git_dir=self._test_git_dir, commit='eeeff8f')
|
||||
config = ConfigI('da', 'ca', 'st')
|
||||
path_factory = PathFactory(git, config)
|
||||
|
||||
self._dobj = DataFileObj(os.path.join('da', 'dir1', 'd2', 'file.txt'), git, config)
|
||||
deep_path = os.path.join('da', 'dir1', 'd2', 'file.txt')
|
||||
self.data_path = path_factory.data_path(deep_path)
|
||||
pass
|
||||
|
||||
def test_data_file(self):
|
||||
target = os.path.join(self._test_git_dir, 'da', 'dir1', 'd2', 'file.txt')
|
||||
self.assertEqual(self._dobj.data_file_abs, target)
|
||||
self.assertEqual(self.data_path.data.abs, target)
|
||||
|
||||
def test_cache_file(self):
|
||||
target = os.path.join(self._test_git_dir, 'ca', 'dir1', 'd2', 'file.txt_eeeff8f')
|
||||
self.assertEqual(self._dobj.cache_file_abs, target)
|
||||
self.assertEqual(self.data_path.cache.abs, target)
|
||||
|
||||
def test_state_file(self):
|
||||
target = os.path.join(self._test_git_dir, 'st', 'dir1', 'd2', 'file.txt.state')
|
||||
self.assertEqual(self._dobj.state_file_abs, target)
|
||||
self.assertEqual(self.data_path.state.abs, target)
|
||||
|
||||
def test_symlink(self):
|
||||
self.assertEqual(self.data_path._symlink_file, '../../../ca/dir1/d2/file.txt_eeeff8f')
|
||||
|
||||
|
||||
class TestDataFileObjLongPath(BasicDataDirTest):
|
||||
@@ -102,36 +150,38 @@ class TestDataFileObjLongPath(BasicDataDirTest):
|
||||
|
||||
self._git = GitWrapperI(git_dir=self._test_git_dir, commit='123ed8')
|
||||
self._config = ConfigI('data', 'cache', 'state')
|
||||
self.path_factory = PathFactory(self._git, self._config)
|
||||
|
||||
self._dobj = DataFileObj(os.path.join('..', '..', 'data', 'file1.txt'),
|
||||
self._git, self._config)
|
||||
# self._dobj = DataFileObj(os.path.join('..', '..', 'data', 'file1.txt'),
|
||||
# self._git, self._config)
|
||||
self.data_path = self.path_factory.data_path(os.path.join('..', '..', 'data', 'file1.txt'))
|
||||
pass
|
||||
|
||||
def test_data_file(self):
|
||||
target = os.path.join(self._test_git_dir, 'data', 'file1.txt')
|
||||
self.assertEqual(self._dobj.data_file_abs, target)
|
||||
self.assertEqual(self.data_path.data.abs, target)
|
||||
|
||||
def test_cache_file(self):
|
||||
target = os.path.join(self._test_git_dir, 'cache', 'file1.txt_123ed8')
|
||||
self.assertEqual(self._dobj.cache_file_abs, target)
|
||||
self.assertEqual(self.data_path.cache.abs, target)
|
||||
|
||||
def test_state_file(self):
|
||||
target = os.path.join(self._test_git_dir, 'state', 'file1.txt.state')
|
||||
self.assertEqual(self._dobj.state_file_abs, target)
|
||||
self.assertEqual(self.data_path.state.abs, target)
|
||||
|
||||
def test_file_name_only(self):
|
||||
with self.assertRaises(NotInDataDirError):
|
||||
DataFileObj('file.txt', self._git, self._config)
|
||||
self.path_factory.data_path('file.txt')
|
||||
pass
|
||||
|
||||
def test_relative_git_dir(self):
|
||||
with self.assertRaises(NotInDataDirError):
|
||||
DataFileObj('data/file.txt', self._git, self._config)
|
||||
self.path_factory.data_path('data/file.txt')
|
||||
pass
|
||||
|
||||
def test_relative_path_error(self):
|
||||
with self.assertRaises(NotInDataDirError):
|
||||
DataFileObj('../data/file.txt', self._git, self._config)
|
||||
self.path_factory.data_path('../data/file.txt')
|
||||
pass
|
||||
|
||||
|
||||
@@ -146,7 +196,8 @@ class RunOutsideGitRepoTest(BasicDataDirTest):
|
||||
def test_outside_git_dir(self):
|
||||
git = GitWrapperI(git_dir=self._test_git_dir, commit='123ed8')
|
||||
config = ConfigI('data', 'cache', 'state')
|
||||
path_factory = PathFactory(git, config)
|
||||
|
||||
with self.assertRaises(NotInDataDirError):
|
||||
DataFileObj('file.txt', git, config)
|
||||
path_factory.data_path('file.txt')
|
||||
pass
|
||||
|
||||
@@ -2,6 +2,7 @@ import os
|
||||
import shutil
|
||||
from unittest import TestCase
|
||||
|
||||
from dvc.dvc_path import DvcPath
|
||||
from dvc.git_wrapper import GitWrapperI
|
||||
|
||||
|
||||
@@ -13,7 +14,7 @@ class TestDvcPathTest(TestCase):
|
||||
os.makedirs(os.path.join(self.test_dir, 'code', 'lib'))
|
||||
os.makedirs(os.path.join(self.test_dir, 'd1', 'd2', 'dir3', 'd4', 'dir5'))
|
||||
|
||||
self.git = GitWrapperI(self.test_dir)
|
||||
self._git = GitWrapperI(self.test_dir)
|
||||
|
||||
def _validate_dvc_path(self, path, dvc_file_name, relative_file_name):
|
||||
self.assertEqual(path.dvc, dvc_file_name)
|
||||
@@ -23,11 +24,10 @@ class TestDvcPathTest(TestCase):
|
||||
self.assertTrue(path.abs.endswith(dvc_file_name))
|
||||
|
||||
def basic_test(self):
|
||||
print('----------------------------------------------')
|
||||
os.chdir(self.test_dir)
|
||||
|
||||
file = os.path.join('data', 'file.txt')
|
||||
path = self.git.build_dvc_path(file)
|
||||
path = DvcPath(file, self._git)
|
||||
self._validate_dvc_path(path, file, file)
|
||||
pass
|
||||
|
||||
@@ -37,9 +37,8 @@ class TestDvcPathTest(TestCase):
|
||||
file_dvc_path = os.path.join('data', 'file1.txt')
|
||||
file_relative_path = os.path.join('..', file_dvc_path)
|
||||
|
||||
path = self.git.build_dvc_path(file_relative_path)
|
||||
path = DvcPath(file_relative_path, self._git)
|
||||
self._validate_dvc_path(path, file_dvc_path, file_relative_path)
|
||||
print('+++++++++++++++++++++++++++++')
|
||||
pass
|
||||
|
||||
def from_deep_dirs_test(self):
|
||||
@@ -49,7 +48,7 @@ class TestDvcPathTest(TestCase):
|
||||
file_dvc = os.path.join('code', 'lib', 'context_switcher_structs.asm')
|
||||
file_relative = os.path.join('..', '..', '..', file_dvc)
|
||||
|
||||
path = self.git.build_dvc_path(file_relative)
|
||||
path = DvcPath(file_relative, self._git)
|
||||
self._validate_dvc_path(path, file_dvc, file_relative)
|
||||
pass
|
||||
|
||||
@@ -60,6 +59,6 @@ class TestDvcPathTest(TestCase):
|
||||
file_relative_path = os.path.join(deep_dir, 'd4', 'dir5', 'rawdata.tsv')
|
||||
file_dvc_path = os.path.join(deep_dir, file_relative_path)
|
||||
|
||||
path = self.git.build_dvc_path(file_relative_path)
|
||||
path = DvcPath(file_relative_path, self._git)
|
||||
self._validate_dvc_path(path, file_dvc_path, file_relative_path)
|
||||
pass
|
||||
|
||||
Reference in New Issue
Block a user