objects: split into separate files (#5609)

This commit is contained in:
Ruslan Kuprieiev
2021-03-12 04:12:46 +02:00
committed by GitHub
parent 4af3b3d20d
commit 29ad87ebe2
14 changed files with 177 additions and 167 deletions
+2 -1
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@@ -9,7 +9,8 @@ from dvc.exceptions import (
ConfirmRemoveError,
DvcException,
)
from dvc.objects import ObjectFormatError, check, load
from dvc.objects import check, load
from dvc.objects.errors import ObjectFormatError
from dvc.objects.stage import stage
from dvc.remote.slow_link_detection import ( # type: ignore[attr-defined]
slow_link_guard,
+1 -152
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@@ -1,77 +1,13 @@
import itertools
import logging
from concurrent import futures
from dvc.exceptions import DvcException
from dvc.progress import Tqdm
from .stage import get_file_hash
from .tree import Tree
logger = logging.getLogger(__name__)
class ObjectError(DvcException):
pass
class ObjectFormatError(ObjectError):
pass
class HashFile:
def __init__(self, path_info, fs, hash_info):
self.path_info = path_info
self.fs = fs
self.hash_info = hash_info
@property
def size(self):
if not (self.path_info and self.fs):
return None
return self.fs.getsize(self.path_info)
def __len__(self):
return 1
def __str__(self):
return f"object {self.hash_info}"
def __bool__(self):
return bool(self.hash_info)
def __eq__(self, other):
if not isinstance(other, HashFile):
return False
return (
self.path_info == other.path_info
and self.fs == other.fs
and self.hash_info == other.hash_info
)
def check(self, odb):
actual = get_file_hash(
self.path_info, self.fs, self.hash_info.name, odb.repo.state
)
logger.trace(
"cache '%s' expected '%s' actual '%s'",
self.path_info,
self.hash_info,
actual,
)
assert actual.name == self.hash_info.name
if actual.value.split(".")[0] != self.hash_info.value.split(".")[0]:
raise ObjectFormatError(f"{self} is corrupted")
@classmethod
def load(cls, odb, hash_info):
return odb.get(hash_info)
def save(odb, obj, **kwargs):
from .tree import Tree
if isinstance(obj, Tree):
for _, entry in Tqdm(obj):
odb.add(entry.path_info, entry.fs, entry.hash_info, **kwargs)
@@ -79,8 +15,6 @@ def save(odb, obj, **kwargs):
def check(odb, obj):
from .tree import Tree
odb.check(obj.hash_info)
if isinstance(obj, Tree):
@@ -89,91 +23,6 @@ def check(odb, obj):
def load(odb, hash_info):
from .tree import Tree
if hash_info.isdir:
return Tree.load(odb, hash_info)
return odb.get(hash_info)
def _transfer_file(odb, from_fs, from_info):
from dvc.utils import tmp_fname
from dvc.utils.stream import HashedStreamReader
tmp_info = odb.fs.path_info / tmp_fname()
with from_fs.open(
from_info, mode="rb", chunk_size=from_fs.CHUNK_SIZE
) as stream:
stream_reader = HashedStreamReader(stream)
# Since we don't know the hash beforehand, we'll
# upload it to a temporary location and then move
# it.
odb.fs.upload_fobj(
stream_reader,
tmp_info,
total=from_fs.getsize(from_info),
desc=from_info.name,
)
hash_info = stream_reader.hash_info
return tmp_info, hash_info
def _transfer_directory_contents(odb, from_fs, from_info, jobs, pbar):
rel_path_infos = {}
from_infos = from_fs.walk_files(from_info)
def create_tasks(executor, amount):
for entry_info in itertools.islice(from_infos, amount):
pbar.total += 1
task = executor.submit(
pbar.wrap_fn(_transfer_file), odb, from_fs, entry_info
)
rel_path_infos[task] = entry_info.relative_to(from_info)
yield task
pbar.total = 0
with futures.ThreadPoolExecutor(max_workers=jobs) as executor:
tasks = set(create_tasks(executor, jobs * 5))
while tasks:
done, tasks = futures.wait(
tasks, return_when=futures.FIRST_COMPLETED
)
tasks.update(create_tasks(executor, len(done)))
for task in done:
yield rel_path_infos.pop(task), task.result()
def _transfer_directory(odb, from_fs, from_info, jobs, no_progress_bar=False):
from .tree import Tree
tree = Tree(None, None, None)
with Tqdm(total=1, unit="Files", disable=no_progress_bar) as pbar:
for (
entry_info,
(entry_tmp_info, entry_hash),
) in _transfer_directory_contents(odb, from_fs, from_info, jobs, pbar):
obj = HashFile(entry_tmp_info, odb.fs, entry_hash)
tree.add(entry_info.parts, obj)
tree.digest()
save(odb, tree)
return tree.hash_info
def transfer(odb, from_fs, from_info, jobs=None, no_progress_bar=False):
jobs = jobs or min((from_fs.jobs, odb.fs.jobs))
if from_fs.isdir(from_info):
return _transfer_directory(
odb,
from_fs,
from_info,
jobs=jobs,
no_progress_bar=no_progress_bar,
)
tmp_info, hash_info = _transfer_file(odb, from_fs, from_info)
odb.add(tmp_info, odb.fs, hash_info)
return hash_info
+2 -2
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@@ -4,10 +4,10 @@ from concurrent.futures import ThreadPoolExecutor
from copy import copy
from typing import Optional
from dvc.objects.errors import ObjectFormatError
from dvc.objects.file import HashFile
from dvc.progress import Tqdm
from .. import HashFile, ObjectFormatError
logger = logging.getLogger(__name__)
+1 -1
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@@ -6,7 +6,7 @@ from funcy import cached_property
from shortuuid import uuid
from dvc.hash_info import HashInfo
from dvc.objects import ObjectFormatError
from dvc.objects.errors import ObjectFormatError
from dvc.path_info import PathInfo
from dvc.progress import Tqdm
from dvc.utils import relpath
+9
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@@ -0,0 +1,9 @@
from dvc.exceptions import DvcException
class ObjectError(DvcException):
pass
class ObjectFormatError(ObjectError):
pass
+57
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@@ -0,0 +1,57 @@
import logging
from .errors import ObjectFormatError
from .stage import get_file_hash
logger = logging.getLogger(__name__)
class HashFile:
def __init__(self, path_info, fs, hash_info):
self.path_info = path_info
self.fs = fs
self.hash_info = hash_info
@property
def size(self):
if not (self.path_info and self.fs):
return None
return self.fs.getsize(self.path_info)
def __len__(self):
return 1
def __str__(self):
return f"object {self.hash_info}"
def __bool__(self):
return bool(self.hash_info)
def __eq__(self, other):
if not isinstance(other, HashFile):
return False
return (
self.path_info == other.path_info
and self.fs == other.fs
and self.hash_info == other.hash_info
)
def check(self, odb):
actual = get_file_hash(
self.path_info, self.fs, self.hash_info.name, odb.repo.state
)
logger.trace(
"cache '%s' expected '%s' actual '%s'",
self.path_info,
self.hash_info,
actual,
)
assert actual.name == self.hash_info.name
if actual.value.split(".")[0] != self.hash_info.value.split(".")[0]:
raise ObjectFormatError(f"{self} is corrupted")
@classmethod
def load(cls, odb, hash_info):
return odb.get(hash_info)
+2 -2
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@@ -77,7 +77,7 @@ def _iter_hashes(path_info, fs, name, state, **kwargs):
def _build_tree(path_info, fs, name, state, **kwargs):
from . import HashFile
from .file import HashFile
from .tree import Tree
tree = Tree(None, None, None)
@@ -176,7 +176,7 @@ def stage(odb, path_info, fs, name, **kwargs):
if fs.isdir(path_info):
obj = _get_tree_obj(path_info, fs, name, odb, state, **kwargs)
else:
from . import HashFile
from .file import HashFile
hash_info = get_file_hash(path_info, fs, name, state)
obj = HashFile(path_info, fs, hash_info)
+92
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@@ -0,0 +1,92 @@
import itertools
import logging
from concurrent import futures
from dvc.progress import Tqdm
from . import save
from .file import HashFile
from .tree import Tree
logger = logging.getLogger(__name__)
def _transfer_file(odb, from_fs, from_info):
from dvc.utils import tmp_fname
from dvc.utils.stream import HashedStreamReader
tmp_info = odb.fs.path_info / tmp_fname()
with from_fs.open(
from_info, mode="rb", chunk_size=from_fs.CHUNK_SIZE
) as stream:
stream_reader = HashedStreamReader(stream)
# Since we don't know the hash beforehand, we'll
# upload it to a temporary location and then move
# it.
odb.fs.upload_fobj(
stream_reader,
tmp_info,
total=from_fs.getsize(from_info),
desc=from_info.name,
)
hash_info = stream_reader.hash_info
return tmp_info, hash_info
def _transfer_directory_contents(odb, from_fs, from_info, jobs, pbar):
rel_path_infos = {}
from_infos = from_fs.walk_files(from_info)
def create_tasks(executor, amount):
for entry_info in itertools.islice(from_infos, amount):
pbar.total += 1
task = executor.submit(
pbar.wrap_fn(_transfer_file), odb, from_fs, entry_info
)
rel_path_infos[task] = entry_info.relative_to(from_info)
yield task
pbar.total = 0
with futures.ThreadPoolExecutor(max_workers=jobs) as executor:
tasks = set(create_tasks(executor, jobs * 5))
while tasks:
done, tasks = futures.wait(
tasks, return_when=futures.FIRST_COMPLETED
)
tasks.update(create_tasks(executor, len(done)))
for task in done:
yield rel_path_infos.pop(task), task.result()
def _transfer_directory(odb, from_fs, from_info, jobs, no_progress_bar=False):
tree = Tree(None, None, None)
with Tqdm(total=1, unit="Files", disable=no_progress_bar) as pbar:
for (
entry_info,
(entry_tmp_info, entry_hash),
) in _transfer_directory_contents(odb, from_fs, from_info, jobs, pbar):
obj = HashFile(entry_tmp_info, odb.fs, entry_hash)
tree.add(entry_info.parts, obj)
tree.digest()
save(odb, tree)
return tree.hash_info
def transfer(odb, from_fs, from_info, jobs=None, no_progress_bar=False):
jobs = jobs or min((from_fs.jobs, odb.fs.jobs))
if from_fs.isdir(from_info):
return _transfer_directory(
odb,
from_fs,
from_info,
jobs=jobs,
no_progress_bar=no_progress_bar,
)
tmp_info, hash_info = _transfer_file(odb, from_fs, from_info)
odb.add(tmp_info, odb.fs, hash_info)
return hash_info
+2 -1
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@@ -4,7 +4,8 @@ import posixpath
from funcy import cached_property
from . import HashFile, ObjectFormatError
from .errors import ObjectFormatError
from .file import HashFile
from .stage import get_file_hash
logger = logging.getLogger(__name__)
+5 -4
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@@ -18,6 +18,7 @@ from dvc.exceptions import (
)
from dvc.hash_info import HashInfo
from dvc.objects.db import NamedCache
from dvc.objects.errors import ObjectFormatError
from dvc.objects.stage import stage as ostage
from ..fs.base import BaseFileSystem
@@ -220,7 +221,7 @@ class BaseOutput:
try:
objects.check(self.odb, obj)
return False
except (FileNotFoundError, objects.ObjectFormatError):
except (FileNotFoundError, ObjectFormatError):
return True
def workspace_status(self):
@@ -487,7 +488,7 @@ class BaseOutput:
try:
objects.check(self.odb, self.odb.get(self.hash_info))
except (FileNotFoundError, objects.ObjectFormatError):
except (FileNotFoundError, ObjectFormatError):
self.repo.cloud.pull(
NamedCache.make("local", self.hash_info.value, str(self)),
show_checksums=False,
@@ -496,7 +497,7 @@ class BaseOutput:
try:
self.obj = objects.load(self.odb, self.hash_info)
except (objects.ObjectFormatError, FileNotFoundError):
except (FileNotFoundError, ObjectFormatError):
self.obj = None
return self.obj
@@ -532,7 +533,7 @@ class BaseOutput:
try:
objects.check(self.odb, self.odb.get(self.hash_info))
except (FileNotFoundError, objects.ObjectFormatError):
except (FileNotFoundError, ObjectFormatError):
msg = (
"Missing cache for directory '{}'. "
"Cache for files inside will be lost. "
+1 -1
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@@ -506,7 +506,7 @@ class Remote:
return ret
def transfer(self, from_fs, from_info, jobs=None, no_progress_bar=False):
from dvc.objects import transfer
from dvc.objects.transfer import transfer
return transfer(
self.odb,
+1 -1
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@@ -173,7 +173,7 @@ def _process_stages(
)
else:
from dvc.fs import get_cloud_fs
from dvc.objects import transfer
from dvc.objects.transfer import transfer
from_fs = get_cloud_fs(repo, url=target)
out.hash_info = transfer(
+1 -1
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@@ -7,8 +7,8 @@ import pytest
from dvc.hash_info import HashInfo
from dvc.main import main
from dvc.objects import ObjectFormatError
from dvc.objects.db import ODBManager
from dvc.objects.errors import ObjectFormatError
from dvc.utils import relpath
from tests.basic_env import TestDir, TestDvc
+1 -1
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@@ -3,7 +3,7 @@ from operator import itemgetter
import pytest
from dvc.hash_info import HashInfo
from dvc.objects import HashFile
from dvc.objects.file import HashFile
from dvc.objects.tree import Tree, _merge