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https://github.com/Stone-Red-Code/dvc.git
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* stage: make runs checkpointable * api: add make_checkpoint API call * tests: add test for checkpointed stage * experiments: implement checkpoints callback chain * initial working state * use .dvc/tmp for checkpoint signal file location * force repro for checkpoint experiments * checkout: add flag to allow missing persistent outputs (i.e. not yet created) * use allow_persist_missing on checkpoint experiment repro * executor: force checkout before checkpoints experiment repro * move checkpoint commands to `dvc exp run` * support resuming checkpoint runs with --continue * fix git bugs * experiments: include checkpoint commits in `exp show` * use 1sec sleep timers * fix apply_workspace test conflict * tests: add test for `dvc exp run` * cleanup signal file behavior * fix bool conversion * tests: add tests for checkpoint and checkpoint_continue * fix styling * fix checkpoint stage test * fix checkpoint monitor thread condition/notification
143 lines
4.4 KiB
Python
143 lines
4.4 KiB
Python
import os
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from contextlib import _GeneratorContextManager as GCM
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from contextlib import contextmanager
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from funcy import reraise
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from dvc.exceptions import (
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NotDvcRepoError,
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OutputNotFoundError,
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PathMissingError,
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)
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from dvc.external_repo import external_repo
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from dvc.path_info import PathInfo
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from dvc.repo import Repo
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def get_url(path, repo=None, rev=None, remote=None):
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"""
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Returns the URL to the storage location of a data file or directory tracked
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in a DVC repo. For Git repos, HEAD is used unless a rev argument is
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supplied. The default remote is tried unless a remote argument is supplied.
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Raises OutputNotFoundError if the file is not a dvc-tracked file.
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NOTE: This function does not check for the actual existence of the file or
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directory in the remote storage.
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"""
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with _make_repo(repo, rev=rev) as _repo:
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path_info = PathInfo(_repo.root_dir) / path
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with reraise(FileNotFoundError, PathMissingError(path, repo)):
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metadata = _repo.repo_tree.metadata(path_info)
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if not metadata.is_dvc:
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raise OutputNotFoundError(path, repo)
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cloud = metadata.repo.cloud
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with _repo.state:
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hash_info = _repo.repo_tree.get_hash(path_info)
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return cloud.get_url_for(remote, checksum=hash_info.value)
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def open( # noqa, pylint: disable=redefined-builtin
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path, repo=None, rev=None, remote=None, mode="r", encoding=None
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):
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"""
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Open file in the supplied path tracked in a repo (both DVC projects and
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plain Git repos are supported). For Git repos, HEAD is used unless a rev
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argument is supplied. The default remote is tried unless a remote argument
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is supplied. It may only be used as a context manager:
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with dvc.api.open(
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'path/to/file',
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repo='https://example.com/url/to/repo'
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) as fd:
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# ... Handle file object fd
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"""
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args = (path,)
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kwargs = {
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"repo": repo,
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"remote": remote,
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"rev": rev,
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"mode": mode,
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"encoding": encoding,
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}
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return _OpenContextManager(_open, args, kwargs)
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class _OpenContextManager(GCM):
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def __init__(
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self, func, args, kwds
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): # pylint: disable=super-init-not-called
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self.gen = func(*args, **kwds)
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self.func, self.args, self.kwds = func, args, kwds
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def __getattr__(self, name):
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raise AttributeError(
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"dvc.api.open() should be used in a with statement."
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)
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def _open(path, repo=None, rev=None, remote=None, mode="r", encoding=None):
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with _make_repo(repo, rev=rev) as _repo:
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with _repo.open_by_relpath(
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path, remote=remote, mode=mode, encoding=encoding
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) as fd:
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yield fd
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def read(path, repo=None, rev=None, remote=None, mode="r", encoding=None):
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"""
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Returns the contents of a tracked file (by DVC or Git). For Git repos, HEAD
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is used unless a rev argument is supplied. The default remote is tried
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unless a remote argument is supplied.
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"""
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with open(
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path, repo=repo, rev=rev, remote=remote, mode=mode, encoding=encoding
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) as fd:
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return fd.read()
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@contextmanager
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def _make_repo(repo_url=None, rev=None):
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repo_url = repo_url or os.getcwd()
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if rev is None and os.path.exists(repo_url):
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try:
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yield Repo(repo_url, subrepos=True)
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return
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except NotDvcRepoError:
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pass # fallthrough to external_repo
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with external_repo(url=repo_url, rev=rev) as repo:
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yield repo
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def make_checkpoint():
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"""
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Signal DVC to create a checkpoint experiment.
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If the current process is being run from DVC, this function will block
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until DVC has finished creating the checkpoint. Otherwise, this function
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will return immediately.
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"""
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import builtins
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from time import sleep
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from dvc.stage.run import CHECKPOINT_SIGNAL_FILE
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if os.getenv("DVC_CHECKPOINT") is None:
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return
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root_dir = Repo.find_root()
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signal_file = os.path.join(
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root_dir, Repo.DVC_DIR, "tmp", CHECKPOINT_SIGNAL_FILE
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)
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with builtins.open(signal_file, "w") as fobj:
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# NOTE: force flushing/writing empty file to disk, otherwise when
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# run in certain contexts (pytest) file may not actually be written
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fobj.write("")
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fobj.flush()
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os.fsync(fobj.fileno())
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while os.path.exists(signal_file):
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sleep(1)
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