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We use all of these for optimization and should not depend on a potentially slow or broken
filesystem on which repository resides (could be HDD or CIFS/NFS/overlayfs/etc).
This PR means a few things:
* all odd filesystems that dvc repo might be on will work quickly out of the box
* when we start caching cloned repositories for `dvc get/import`, we will be
able to cache indexes for them as well (note that bare clones don't have a
worktree so there is no place for .dvc/tmp with the old approach).
* `index.dir` and `state.dir` are now obsolete.
* `dvc init` will cleanup site_cache_dir.
Related #5562