mirror of
https://github.com/Stone-Red-Code/dvc.git
synced 2026-11-02 07:18:25 +01:00
David de la Iglesia Castro
43953ace53
Removed `--include-metrics` / `--include-params` and `--exclude-metrics` / `--exclude-params`. Removed `--no-timestamp` . Can be done by `--drop Created`. `--drop` and `--keep` operate directly on the table columns. `--keep` does not perform any filtering. It's only used to specify columns to keep despite the other filtering. For example `--only-changed --keep foo` will prevent `foo` from being removed by `--only-changed`. Another example, `--drop train.* --keep train.dropout` will remove all columns matching `train.*` except for `train.dropout`. Closes #7079 Closes #7080 Pre-requisite for #6434
801 lines
24 KiB
Python
801 lines
24 KiB
Python
import csv
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import textwrap
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from datetime import datetime
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import pytest
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from dvc.cli import DvcParserError, parse_args
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from dvc.commands.experiments.apply import CmdExperimentsApply
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from dvc.commands.experiments.branch import CmdExperimentsBranch
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from dvc.commands.experiments.diff import CmdExperimentsDiff
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from dvc.commands.experiments.gc import CmdExperimentsGC
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from dvc.commands.experiments.init import CmdExperimentsInit
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from dvc.commands.experiments.ls import CmdExperimentsList
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from dvc.commands.experiments.pull import CmdExperimentsPull
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from dvc.commands.experiments.push import CmdExperimentsPush
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from dvc.commands.experiments.remove import CmdExperimentsRemove
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from dvc.commands.experiments.run import CmdExperimentsRun
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from dvc.commands.experiments.show import CmdExperimentsShow, show_experiments
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from dvc.exceptions import InvalidArgumentError
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from dvc.repo import Repo
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from dvc.stage import PipelineStage
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from tests.utils import ANY
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from tests.utils.asserts import called_once_with_subset
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from .test_repro import default_arguments as repro_arguments
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def test_experiments_apply(dvc, scm, mocker):
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cli_args = parse_args(["experiments", "apply", "--no-force", "exp_rev"])
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assert cli_args.func == CmdExperimentsApply
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cmd = cli_args.func(cli_args)
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m = mocker.patch("dvc.repo.experiments.apply.apply", return_value={})
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assert cmd.run() == 0
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m.assert_called_once_with(cmd.repo, "exp_rev", force=False)
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def test_experiments_diff(dvc, scm, mocker):
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cli_args = parse_args(
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[
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"experiments",
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"diff",
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"HEAD~10",
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"HEAD~1",
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"--all",
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"--param-deps",
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"--json",
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"--md",
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"--precision",
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"10",
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]
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)
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assert cli_args.func == CmdExperimentsDiff
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cmd = cli_args.func(cli_args)
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m = mocker.patch("dvc.repo.experiments.diff.diff", return_value={})
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assert cmd.run() == 0
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m.assert_called_once_with(
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cmd.repo, a_rev="HEAD~10", b_rev="HEAD~1", all=True, param_deps=True
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)
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def test_experiments_diff_revs(mocker, capsys):
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mocker.patch(
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"dvc.repo.experiments.diff.diff",
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return_value={
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"params": {
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"params.yaml": {"foo": {"diff": 1, "old": 1, "new": 2}}
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},
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"metrics": {
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"metrics.yaml": {"foo": {"diff": 1, "old": 1, "new": 2}}
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},
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},
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)
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cli_args = parse_args(["exp", "diff", "exp_a", "exp_b"])
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cmd = cli_args.func(cli_args)
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capsys.readouterr()
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assert cmd.run() == 0
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cap = capsys.readouterr()
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assert "exp_a" in cap.out
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assert "exp_b" in cap.out
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def test_experiments_show(dvc, scm, mocker):
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cli_args = parse_args(
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[
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"experiments",
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"show",
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"--all-tags",
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"--all-branches",
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"--all-commits",
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"--sha",
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"--param-deps",
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"-n",
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"1",
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"--rev",
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"foo",
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]
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)
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assert cli_args.func == CmdExperimentsShow
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cmd = cli_args.func(cli_args)
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m = mocker.patch("dvc.repo.experiments.show.show", return_value={})
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assert cmd.run() == 0
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m.assert_called_once_with(
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cmd.repo,
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all_tags=True,
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all_branches=True,
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all_commits=True,
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num=1,
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revs="foo",
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sha_only=True,
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param_deps=True,
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)
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def test_experiments_run(dvc, scm, mocker):
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default_arguments = {
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"params": [],
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"name": None,
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"queue": False,
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"run_all": False,
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"jobs": 1,
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"tmp_dir": False,
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"checkpoint_resume": None,
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"reset": False,
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"machine": None,
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}
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default_arguments.update(repro_arguments)
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cmd = CmdExperimentsRun(parse_args(["exp", "run"]))
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mocker.patch.object(cmd.repo, "reproduce")
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mocker.patch.object(cmd.repo.experiments, "run")
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cmd.run()
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# pylint: disable=no-member
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cmd.repo.experiments.run.assert_called_with(**default_arguments)
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def test_experiments_gc(dvc, scm, mocker):
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cli_args = parse_args(
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[
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"exp",
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"gc",
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"--workspace",
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"--all-tags",
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"--all-branches",
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"--all-commits",
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"--queued",
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"--force",
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]
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)
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assert cli_args.func == CmdExperimentsGC
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cmd = cli_args.func(cli_args)
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m = mocker.patch("dvc.repo.experiments.gc.gc", return_value={})
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assert cmd.run() == 0
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m.assert_called_once_with(
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cmd.repo,
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workspace=True,
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all_tags=True,
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all_branches=True,
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all_commits=True,
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queued=True,
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)
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cli_args = parse_args(["exp", "gc"])
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cmd = cli_args.func(cli_args)
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with pytest.raises(InvalidArgumentError):
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cmd.run()
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def test_experiments_branch(dvc, scm, mocker):
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cli_args = parse_args(["experiments", "branch", "expname", "branchname"])
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assert cli_args.func == CmdExperimentsBranch
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cmd = cli_args.func(cli_args)
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m = mocker.patch("dvc.repo.experiments.branch.branch", return_value={})
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assert cmd.run() == 0
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m.assert_called_once_with(cmd.repo, "expname", "branchname")
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def test_experiments_list(dvc, scm, mocker):
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cli_args = parse_args(
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[
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"experiments",
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"list",
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"origin",
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"--rev",
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"foo",
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"--all",
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"--names-only",
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]
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)
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assert cli_args.func == CmdExperimentsList
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cmd = cli_args.func(cli_args)
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m = mocker.patch("dvc.repo.experiments.ls.ls", return_value={})
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assert cmd.run() == 0
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m.assert_called_once_with(
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cmd.repo, git_remote="origin", rev="foo", all_=True
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)
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def test_experiments_push(dvc, scm, mocker):
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cli_args = parse_args(
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[
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"experiments",
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"push",
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"origin",
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"experiment1",
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"experiment2",
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"--force",
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"--no-cache",
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"--remote",
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"my-remote",
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"--jobs",
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"1",
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"--run-cache",
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]
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)
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assert cli_args.func == CmdExperimentsPush
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cmd = cli_args.func(cli_args)
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m = mocker.patch("dvc.repo.experiments.push.push", return_value={})
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assert cmd.run() == 0
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m.assert_called_once_with(
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cmd.repo,
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"origin",
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["experiment1", "experiment2"],
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force=True,
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push_cache=False,
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dvc_remote="my-remote",
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jobs=1,
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run_cache=True,
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)
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def test_experiments_pull(dvc, scm, mocker):
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cli_args = parse_args(
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[
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"experiments",
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"pull",
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"origin",
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"experiment",
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"--force",
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"--no-cache",
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"--remote",
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"my-remote",
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"--jobs",
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"1",
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"--run-cache",
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]
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)
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assert cli_args.func == CmdExperimentsPull
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cmd = cli_args.func(cli_args)
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m = mocker.patch("dvc.repo.experiments.pull.pull", return_value={})
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assert cmd.run() == 0
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m.assert_called_once_with(
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cmd.repo,
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"origin",
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["experiment"],
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force=True,
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pull_cache=False,
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dvc_remote="my-remote",
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jobs=1,
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run_cache=True,
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)
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@pytest.mark.parametrize(
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"queue,clear_all,remote",
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[(True, False, None), (False, True, None), (False, False, True)],
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)
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def test_experiments_remove(dvc, scm, mocker, queue, clear_all, remote):
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if queue:
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args = ["--queue"]
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if clear_all:
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args = ["--all"]
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if remote:
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args = ["--git-remote", "myremote", "exp-123", "exp-234"]
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cli_args = parse_args(["experiments", "remove"] + args)
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assert cli_args.func == CmdExperimentsRemove
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cmd = cli_args.func(cli_args)
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m = mocker.patch("dvc.repo.experiments.remove.remove", return_value={})
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assert cmd.run() == 0
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m.assert_called_once_with(
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cmd.repo,
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exp_names=["exp-123", "exp-234"] if remote else [],
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queue=queue,
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clear_all=clear_all,
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remote="myremote" if remote else None,
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)
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def test_show_experiments_csv(capsys):
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all_experiments = {
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"workspace": {
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"baseline": {
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"data": {
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"timestamp": None,
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"params": {
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"params.yaml": {
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"data": {
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"featurize": {
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"max_features": 3000,
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"ngrams": 1,
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},
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"parent": 20170428,
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"train": {
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"n_est": 100,
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"min_split": 36,
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},
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}
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}
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},
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"queued": False,
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"running": False,
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"executor": None,
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"metrics": {
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"scores.json": {
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"data": {
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"featurize": {
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"max_features": 3000,
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"ngrams": 1,
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},
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"avg_prec": 0.5843640011189556,
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"roc_auc": 0.9544670443829399,
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}
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}
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},
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}
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}
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},
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"b05eecc666734e899f79af228ff49a7ae5a18cc0": {
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"baseline": {
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"data": {
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"timestamp": datetime(2021, 8, 2, 16, 48, 14),
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"params": {
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"params.yaml": {
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"data": {
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"featurize": {
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"max_features": 3000,
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"ngrams": 1,
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},
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"parent": 20170428,
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"train": {
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"n_est": 100,
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"min_split": 2,
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},
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}
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}
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},
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"queued": False,
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"running": False,
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"executor": None,
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"metrics": {
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"scores.json": {
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"data": {
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"featurize": {
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"max_features": 3000,
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"ngrams": 1,
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},
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"avg_prec": 0.5325162867864254,
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"roc_auc": 0.9106964878520005,
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}
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}
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},
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"name": "master",
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}
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},
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"ae99936461d6c3092934160f8beafe66a294f98d": {
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"data": {
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"timestamp": datetime(2021, 8, 31, 14, 56, 55),
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"params": {
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"params.yaml": {
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"data": {
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"featurize": {
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"max_features": 3000,
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"ngrams": 1,
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},
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"parent": 20170428,
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"train": {
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"n_est": 100,
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"min_split": 36,
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},
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}
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}
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},
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"queued": True,
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"running": True,
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"executor": None,
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"metrics": {
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"scores.json": {
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"data": {
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"featurize": {
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"max_features": 3000,
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"ngrams": 1,
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},
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"avg_prec": 0.5843640011189556,
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"roc_auc": 0.9544670443829399,
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}
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}
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},
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"name": "exp-44136",
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}
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},
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},
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}
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show_experiments(
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all_experiments, precision=None, fill_value="", iso=True, csv=True
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)
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cap = capsys.readouterr()
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assert (
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"Experiment,rev,typ,Created,parent,State,scores.json:"
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"featurize.max_features,scores.json:featurize.ngrams,"
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"avg_prec,roc_auc,params.yaml:featurize.max_features,"
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"params.yaml:featurize.ngrams,params.yaml:parent,"
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"train.n_est,train.min_split" in cap.out
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)
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assert (
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",workspace,baseline,,,,3000,1,0.5843640011189556,0.9544670443829399,"
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"3000,1,20170428,100,36" in cap.out
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)
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assert (
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"master,b05eecc,baseline,2021-08-02T16:48:14,,,3000,1,"
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"0.5325162867864254,0.9106964878520005,3000,1,20170428,100,2"
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in cap.out
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)
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assert (
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"exp-44136,ae99936,branch_base,2021-08-31T14:56:55,,Running,"
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"3000,1,0.5843640011189556,0.9544670443829399,3000,1,20170428,100,36"
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in cap.out
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)
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def test_show_experiments_md(capsys):
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all_experiments = {
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"workspace": {
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"baseline": {
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"data": {
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"timestamp": None,
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"params": {"params.yaml": {"data": {"foo": 1}}},
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"queued": False,
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"running": False,
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"executor": None,
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"metrics": {
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"scores.json": {"data": {"bar": 0.9544670443829399}}
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},
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}
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}
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},
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}
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show_experiments(
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all_experiments, precision=None, fill_value="", iso=True, markdown=True
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)
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cap = capsys.readouterr()
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assert cap.out == textwrap.dedent(
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"""\
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| Experiment | Created | bar | foo |
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|--------------|-----------|--------------------|-------|
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| workspace | | 0.9544670443829399 | 1 |\n
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"""
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)
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@pytest.mark.parametrize("sort_order", ["asc", "desc"])
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def test_show_experiments_sort_by(capsys, sort_order):
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sort_experiments = {
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"workspace": {
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"baseline": {
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"data": {
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"timestamp": None,
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"params": {
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"params.yaml": {
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"data": {
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"foo": 1,
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}
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}
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},
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"queued": False,
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"running": False,
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"executor": None,
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"metrics": {},
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}
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}
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},
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"233b132676792d89e848e5c9c12e408d7efde78a": {
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"baseline": {
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"data": {
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"timestamp": datetime(2021, 8, 2, 16, 48, 14),
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"params": {
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"params.yaml": {
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"data": {
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"foo": 0,
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}
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}
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},
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"queued": False,
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"running": False,
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"executor": None,
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"metrics": {},
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"name": "master",
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}
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},
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"fad0a94": {
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"data": {
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"timestamp": datetime(2021, 8, 31, 14, 56, 55),
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"params": {
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"params.yaml": {
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"data": {
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"foo": 1,
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}
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}
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},
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"queued": False,
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"running": False,
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"executor": None,
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"metrics": {},
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"name": "exp-89140",
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}
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},
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"60fcda8": {
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"data": {
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"timestamp": datetime(2021, 8, 31, 14, 56, 55),
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"params": {
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"params.yaml": {
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"data": {
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"foo": 2,
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}
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}
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},
|
|
"queued": False,
|
|
"running": False,
|
|
"executor": None,
|
|
"metrics": {},
|
|
"name": "exp-43537",
|
|
}
|
|
},
|
|
"a7e9aaf": {
|
|
"data": {
|
|
"timestamp": datetime(2021, 8, 31, 14, 56, 55),
|
|
"params": {
|
|
"params.yaml": {
|
|
"data": {
|
|
"foo": 0,
|
|
}
|
|
}
|
|
},
|
|
"queued": False,
|
|
"running": False,
|
|
"executor": None,
|
|
"metrics": {},
|
|
"name": "exp-4f89e",
|
|
}
|
|
},
|
|
},
|
|
}
|
|
|
|
show_experiments(
|
|
sort_experiments,
|
|
precision=None,
|
|
fill_value="",
|
|
iso=True,
|
|
csv=True,
|
|
sort_by="foo",
|
|
sort_order=sort_order,
|
|
)
|
|
|
|
cap = capsys.readouterr()
|
|
rows = list(csv.reader(cap.out.strip().split("\n")))
|
|
# [3:] To skip header, workspace and baseline(master)
|
|
# which are not affected by order
|
|
params = tuple([int(row[-1]) for row in rows[3:]])
|
|
|
|
if sort_order == "asc":
|
|
assert params == (0, 1, 2)
|
|
else:
|
|
assert params == (2, 1, 0)
|
|
|
|
|
|
@pytest.mark.parametrize("extra_args", [(), ("--run",)])
|
|
def test_experiments_init(dvc, scm, mocker, capsys, extra_args):
|
|
m = mocker.patch(
|
|
"dvc.repo.experiments.init.init",
|
|
return_value=PipelineStage(dvc, path="dvc.yaml", name="stage1"),
|
|
)
|
|
runner = mocker.patch("dvc.repo.experiments.run.run", return_value=0)
|
|
cli_args = parse_args(["exp", "init", *extra_args, "cmd"])
|
|
cmd = cli_args.func(cli_args)
|
|
|
|
assert isinstance(cmd, CmdExperimentsInit)
|
|
assert cmd.run() == 0
|
|
m.assert_called_once_with(
|
|
ANY(Repo),
|
|
name="train",
|
|
type="default",
|
|
defaults={
|
|
"code": "src",
|
|
"models": "models",
|
|
"data": "data",
|
|
"metrics": "metrics.json",
|
|
"params": "params.yaml",
|
|
"plots": "plots",
|
|
"live": "dvclive",
|
|
},
|
|
overrides={"cmd": "cmd"},
|
|
interactive=False,
|
|
force=False,
|
|
)
|
|
expected = "Created train stage in dvc.yaml."
|
|
if not extra_args:
|
|
expected += (
|
|
' To run, use "dvc exp run".\n' "See https://s.dvc.org/g/exp/run."
|
|
)
|
|
assert capsys.readouterr() == (expected + "\n", "")
|
|
if extra_args:
|
|
# `parse_args` creates a new `Repo` object
|
|
runner.assert_called_once_with(ANY(Repo), targets=["stage1"])
|
|
|
|
|
|
def test_experiments_init_config(dvc, scm, mocker):
|
|
with dvc.config.edit() as conf:
|
|
conf["exp"] = {"code": "new_src", "models": "new_models"}
|
|
|
|
m = mocker.patch("dvc.repo.experiments.init.init")
|
|
cli_args = parse_args(["exp", "init", "cmd"])
|
|
cmd = cli_args.func(cli_args)
|
|
|
|
assert isinstance(cmd, CmdExperimentsInit)
|
|
assert cmd.run() == 0
|
|
|
|
m.assert_called_once_with(
|
|
ANY(Repo),
|
|
name="train",
|
|
type="default",
|
|
defaults={
|
|
"code": "new_src",
|
|
"models": "new_models",
|
|
"data": "data",
|
|
"metrics": "metrics.json",
|
|
"params": "params.yaml",
|
|
"plots": "plots",
|
|
"live": "dvclive",
|
|
},
|
|
overrides={"cmd": "cmd"},
|
|
interactive=False,
|
|
force=False,
|
|
)
|
|
|
|
|
|
def test_experiments_init_explicit(dvc, mocker):
|
|
m = mocker.patch("dvc.repo.experiments.init.init")
|
|
cli_args = parse_args(["exp", "init", "--explicit", "cmd"])
|
|
cmd = cli_args.func(cli_args)
|
|
|
|
assert cmd.run() == 0
|
|
m.assert_called_once_with(
|
|
ANY(Repo),
|
|
name="train",
|
|
type="default",
|
|
defaults={},
|
|
overrides={"cmd": "cmd"},
|
|
interactive=False,
|
|
force=False,
|
|
)
|
|
|
|
|
|
def test_experiments_init_cmd_required_for_non_interactive_mode(dvc):
|
|
cli_args = parse_args(["exp", "init"])
|
|
cmd = cli_args.func(cli_args)
|
|
assert isinstance(cmd, CmdExperimentsInit)
|
|
|
|
with pytest.raises(InvalidArgumentError) as exc:
|
|
cmd.run()
|
|
assert str(exc.value) == "command is not specified"
|
|
|
|
|
|
def test_experiments_init_cmd_not_required_for_interactive_mode(dvc, mocker):
|
|
cli_args = parse_args(["exp", "init", "--interactive"])
|
|
cmd = cli_args.func(cli_args)
|
|
assert isinstance(cmd, CmdExperimentsInit)
|
|
|
|
m = mocker.patch("dvc.repo.experiments.init.init")
|
|
assert cmd.run() == 0
|
|
assert called_once_with_subset(m, ANY(Repo), interactive=True)
|
|
|
|
|
|
@pytest.mark.parametrize(
|
|
"extra_args, expected_kw",
|
|
[
|
|
(["--type", "default"], {"type": "default", "name": "train"}),
|
|
(["--type", "dl"], {"type": "dl", "name": "train"}),
|
|
(["--force"], {"force": True, "name": "train"}),
|
|
(
|
|
["--name", "name", "--type", "dl"],
|
|
{"name": "name", "type": "dl"},
|
|
),
|
|
(
|
|
[
|
|
"--plots",
|
|
"p",
|
|
"--models",
|
|
"m",
|
|
"--code",
|
|
"c",
|
|
"--metrics",
|
|
"m.json",
|
|
"--params",
|
|
"p.yaml",
|
|
"--data",
|
|
"d",
|
|
"--live",
|
|
"live",
|
|
],
|
|
{
|
|
"name": "train",
|
|
"overrides": {
|
|
"plots": "p",
|
|
"models": "m",
|
|
"code": "c",
|
|
"metrics": "m.json",
|
|
"params": "p.yaml",
|
|
"data": "d",
|
|
"live": "live",
|
|
"cmd": "cmd",
|
|
},
|
|
},
|
|
),
|
|
],
|
|
)
|
|
def test_experiments_init_extra_args(extra_args, expected_kw, mocker):
|
|
cli_args = parse_args(["exp", "init", *extra_args, "cmd"])
|
|
cmd = cli_args.func(cli_args)
|
|
assert isinstance(cmd, CmdExperimentsInit)
|
|
|
|
m = mocker.patch("dvc.repo.experiments.init.init")
|
|
assert cmd.run() == 0
|
|
assert called_once_with_subset(m, ANY(Repo), **expected_kw)
|
|
|
|
|
|
def test_experiments_init_type_invalid_choice():
|
|
with pytest.raises(DvcParserError):
|
|
parse_args(["exp", "init", "--type=invalid", "cmd"])
|
|
|
|
|
|
def test_show_experiments_pcp(tmp_dir, mocker):
|
|
all_experiments = {
|
|
"workspace": {
|
|
"baseline": {
|
|
"data": {
|
|
"timestamp": None,
|
|
"params": {"params.yaml": {"data": {"foo": 1}}},
|
|
"queued": False,
|
|
"running": False,
|
|
"executor": None,
|
|
"metrics": {
|
|
"scores.json": {"data": {"bar": 0.9544670443829399}}
|
|
},
|
|
}
|
|
}
|
|
},
|
|
}
|
|
experiments_table = mocker.patch(
|
|
"dvc.commands.experiments.show.experiments_table"
|
|
)
|
|
td = experiments_table.return_value
|
|
|
|
show_experiments(all_experiments, pcp=True)
|
|
|
|
td.drop.assert_called_with("Created")
|
|
td.dropna.assert_called_with("rows", how="all", subset=[])
|
|
td.drop_duplicates.assert_called_with("rows", subset=[])
|
|
|
|
kwargs = td.to_parallel_coordinates.call_args[1]
|
|
|
|
assert kwargs["output_path"] == str(tmp_dir / "dvc_plots")
|
|
assert kwargs["color_by"] == "Experiment"
|