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dvc/functest/tutorial_branches.sh
T
2017-10-13 01:27:10 -07:00

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#!/bin/bash
set -e
# 1. First ML model
mkdir myrepo
cd myrepo
git init
echo "This is an empty readme" > README.md
git add README.md
git commit -m 'add readme'
mkdir code
wget -nv -P code/ https://s3-us-west-2.amazonaws.com/dvc-share/so/code/featurization.py \
https://s3-us-west-2.amazonaws.com/dvc-share/so/code/evaluate.py \
https://s3-us-west-2.amazonaws.com/dvc-share/so/code/train_model.py \
https://s3-us-west-2.amazonaws.com/dvc-share/so/code/split_train_test.py \
https://s3-us-west-2.amazonaws.com/dvc-share/so/code/xml_to_tsv.py \
https://s3-us-west-2.amazonaws.com/dvc-share/so/code/requirements.txt
#pip install -U -r code/requirements.txt
# Edit eval file format
git add code/
git commit -m 'Download code'
dvc init
git checkout -b input_100K
dvc import https://s3-us-west-2.amazonaws.com/dvc-share/so/100K/Posts.xml.tgz data/
dvc run tar zxf data/Posts.xml.tgz -C data/
dvc run python code/xml_to_tsv.py data/Posts.xml data/Posts.tsv python
git checkout master
git checkout -b input_25K
dvc import https://s3-us-west-2.amazonaws.com/dvc-share/so/25K/Posts.xml.tgz data/
dvc run tar zxf data/Posts.xml.tgz -C data/
dvc run python code/xml_to_tsv.py data/Posts.xml data/Posts.tsv python
dvc run python code/split_train_test.py data/Posts.tsv 0.33 20170426 data/Posts-train.tsv data/Posts-test.tsv
dvc run python code/featurization.py data/Posts-train.tsv data/Posts-test.tsv data/matrix-train.p data/matrix-test.p
dvc run python code/train_model.py data/matrix-train.p 20170426 data/model.p
dvc run python code/evaluate.py data/model.p data/matrix-test.p data/eval_auc.txt
dvc config Global.Target data/eval_auc.txt
git commit -am 'Set Target'
cat data/eval_auc.txt
# AUC: 0.596182
git checkout input_100K
git merge -s theirs input_25K
git add .
git commit -m 'After merge'
dvc repro -f
# Improve the model:
git checkout input_25K
vi code/train_model.py # Change: estimators=500
git commit -am 'estimators=500'
vi code/train_model.py # Change: n_jobs=6
git commit -am 'n_jobs=6'
dvc repro
cat data/eval_auc.txt
# 0.619262
vi code/featurization.py # Change: add ngram_range=(1, 2) to CountVectorizer
git commit -am 'Add bigrams'
dvc repro
cat data/eval_auc.txt
# 0.628989
vi code/featurization.py
git commit -am 'Add three-grams' # Change: ngram_range=(1, 3)
dvc repro
cat data/eval_auc.txt
# 0.630682
vi code/featurization.py
git commit -am 'Add 4-grams' # Change: ngram_range=(1, 4)
dvc repro
cat data/eval_auc.txt
# 0.621002
git checkout 2195f1032 -b three_grams # <-- you should find hash by git log
dvc repro # not needed
cat data/eval_auc.txt
# 0.630682
git checkout input_100K
git merge -s theirs input_25K
dvc repro
##
vi code/featurization.py
# 0.578447
# 2. Reproduce: change input dataset
dvc remove data/Posts.xml.tgz
#dvc import https://s3-us-west-2.amazonaws.com/dvc-share/so/100K/Posts.xml.tgz data/
dvc import https://s3-us-west-2.amazonaws.com/dvc-share/so/25K/Posts.xml.tgz data/
dvc repro data/evaluation.txt
cat data/evaluation.txt
# AUC: 0.639861
# 3. Share your research
# Improve features
echo " " >> code/featurization.py
git add code/featurization.py
git commit -m 'Include bigram'
dvc repro data/evaluation.txt
cat data/evaluation.txt