Files
dvc/tests/func/test_repro.py
T
Shankho Boron GhoshandRestyled.io 19eaced304 dvc : renamed --outs-only to --dvc-only (#3797)
* Renamed --outs-only to --dvc-only

* Changed outs_only to dvc_only

* replace output_only with dvc_only

* Restyled by black

Co-authored-by: Restyled.io <[email protected]>
2020-05-20 18:24:16 +03:00

1744 lines
51 KiB
Python

import filecmp
import getpass
import os
import posixpath
import re
import shutil
import uuid
from pathlib import Path
from subprocess import PIPE, Popen
from unittest import SkipTest
from urllib.parse import urljoin
import boto3
import paramiko
import pytest
from flaky.flaky_decorator import flaky
from google.cloud import storage as gc
from mock import patch
from dvc.dvcfile import DVC_FILE, Dvcfile
from dvc.exceptions import (
CyclicGraphError,
ReproductionError,
StagePathAsOutputError,
)
from dvc.main import main
from dvc.output.base import BaseOutput
from dvc.path_info import URLInfo
from dvc.remote.local import LocalRemote
from dvc.repo import Repo as DvcRepo
from dvc.stage import Stage
from dvc.stage.exceptions import StageFileDoesNotExistError
from dvc.system import System
from dvc.utils import file_md5, relpath
from dvc.utils.fs import remove
from dvc.utils.stage import dump_stage_file, load_stage_file
from tests.basic_env import TestDvc
from tests.remotes import (
GCP,
HDFS,
S3,
SSH,
TEST_AWS_REPO_BUCKET,
TEST_GCP_REPO_BUCKET,
Local,
SSHMocked,
)
from tests.utils.httpd import ContentMD5Handler, StaticFileServer
class SingleStageRun:
def _run(self, **kwargs):
kwargs["single_stage"] = True
kwargs.pop("name", None)
return self.dvc.run(**kwargs)
@staticmethod
def _get_stage_target(stage):
return stage.path
class TestRepro(SingleStageRun, TestDvc):
def setUp(self):
super().setUp()
stages = self.dvc.add(self.FOO)
self.assertEqual(len(stages), 1)
self.foo_stage = stages[0]
self.assertTrue(self.foo_stage is not None)
self.file1 = "file1"
self.file1_stage = self.file1 + ".dvc"
self.stage = self._run(
fname=self.file1_stage,
outs=[self.file1],
deps=[self.FOO, self.CODE],
cmd=f"python {self.CODE} {self.FOO} {self.file1}",
name="run1",
)
class TestReproFail(TestRepro):
def test(self):
os.unlink(self.CODE)
ret = main(["repro", self._get_stage_target(self.stage)])
self.assertNotEqual(ret, 0)
class TestReproCyclicGraph(SingleStageRun, TestDvc):
def test(self):
self._run(
deps=[self.FOO],
outs=["bar.txt"],
cmd="echo bar > bar.txt",
name="copybarbar-txt",
)
self._run(
deps=["bar.txt"],
outs=["baz.txt"],
cmd="echo baz > baz.txt",
name="copybazbaz-txt",
)
stage_dump = {
"cmd": "echo baz > foo",
"deps": [{"path": "baz.txt"}],
"outs": [{"path": self.FOO}],
}
dump_stage_file("cycle.dvc", stage_dump)
with self.assertRaises(CyclicGraphError):
self.dvc.reproduce("cycle.dvc")
class TestReproWorkingDirectoryAsOutput(TestDvc):
"""
| stage.cwd | out.path | cwd as output |
|:-----------:|:---------:|:-------------:|
| dir | dir | True |
| dir/subdir/ | dir | True |
| dir | dir-1 | False |
| . | something | False |
"""
def test(self):
# File structure:
# .
# |-- dir1
# | |__ dir2.dvc (out.path == ../dir2)
# |__ dir2
# |__ something.dvc (stage.cwd == ./dir2)
os.mkdir(os.path.join(self.dvc.root_dir, "dir1"))
self.dvc.run(
fname=os.path.join("dir1", "dir2.dvc"),
wdir="dir1",
outs=[os.path.join("..", "dir2")],
cmd="mkdir {path}".format(path=os.path.join("..", "dir2")),
single_stage=True,
)
faulty_stage_path = os.path.join("dir2", "something.dvc")
output = os.path.join("..", "something")
stage_dump = {
"cmd": f"echo something > {output}",
"outs": [{"path": output}],
}
dump_stage_file(faulty_stage_path, stage_dump)
with self.assertRaises(StagePathAsOutputError):
self.dvc.reproduce(faulty_stage_path)
def test_nested(self):
# .
# |-- a
# | |__ nested
# | |__ dir
# | |__ error.dvc (stage.cwd == 'a/nested/dir')
# |__ b
# |__ nested.dvc (stage.out == 'a/nested')
dir1 = "b"
dir2 = "a"
os.mkdir(dir1)
os.mkdir(dir2)
nested_dir = os.path.join(dir2, "nested")
out_dir = relpath(nested_dir, dir1)
nested_stage = self.dvc.run(
fname=os.path.join(dir1, "b.dvc"),
wdir=dir1,
outs=[out_dir], # ../a/nested
cmd=f"mkdir {out_dir}",
single_stage=True,
)
os.mkdir(os.path.join(nested_dir, "dir"))
error_stage_path = os.path.join(nested_dir, "dir", "error.dvc")
output = os.path.join("..", "..", "something")
stage_dump = {
"cmd": f"echo something > {output}",
"outs": [{"path": output}],
}
dump_stage_file(error_stage_path, stage_dump)
# NOTE: os.walk() walks in a sorted order and we need dir2 subdirs to
# be processed before dir1 to load error.dvc first.
self.dvc.stages = [
nested_stage,
Dvcfile(self.dvc, error_stage_path).stage,
]
with patch.object(self.dvc, "_reset"): # to prevent `stages` resetting
with self.assertRaises(StagePathAsOutputError):
self.dvc.reproduce(error_stage_path)
def test_similar_paths(self):
# File structure:
#
# .
# |-- something.dvc (out.path == something)
# |-- something
# |__ something-1
# |-- a
# |__ a.dvc (stage.cwd == something-1)
self.dvc.run(
outs=["something"], cmd="mkdir something", single_stage=True
)
os.mkdir("something-1")
stage = os.path.join("something-1", "a.dvc")
stage_dump = {"cmd": "echo a > a", "outs": [{"path": "a"}]}
dump_stage_file(stage, stage_dump)
try:
self.dvc.reproduce(stage)
except StagePathAsOutputError:
self.fail("should not raise StagePathAsOutputError")
class TestReproDepUnderDir(SingleStageRun, TestDvc):
def test(self):
stages = self.dvc.add(self.DATA_DIR)
self.assertEqual(len(stages), 1)
self.dir_stage = stages[0]
self.assertTrue(self.dir_stage is not None)
self.file1 = "file1"
stage = self._run(
fname=self.file1 + ".dvc",
outs=[self.file1],
deps=[self.DATA, self.CODE],
cmd=f"python {self.CODE} {self.DATA} {self.file1}",
name="copy-data-file1",
)
self.assertTrue(filecmp.cmp(self.file1, self.DATA, shallow=False))
os.unlink(self.DATA)
shutil.copyfile(self.FOO, self.DATA)
stages = self.dvc.reproduce(self._get_stage_target(stage))
self.assertEqual(len(stages), 2)
self.assertTrue(filecmp.cmp(self.file1, self.FOO, shallow=False))
class TestReproDepDirWithOutputsUnderIt(SingleStageRun, TestDvc):
def test(self):
stages = self.dvc.add(self.DATA)
self.assertEqual(len(stages), 1)
self.assertTrue(stages[0] is not None)
stages = self.dvc.add(self.DATA_SUB)
self.assertEqual(len(stages), 1)
self.assertTrue(stages[0] is not None)
stage = self.dvc.run(
fname="dvcfile2.dvc",
deps=[self.DATA, self.DATA_SUB],
single_stage=True,
)
self.assertTrue(stage is not None)
file1 = "file1"
file1_stage = file1 + ".dvc"
stage = self._run(
fname=file1_stage,
deps=[self.DATA_DIR],
outs=[file1],
cmd=f"python {self.CODE} {self.DATA} {file1}",
name="copy-data-file1",
)
self.assertTrue(stage is not None)
os.unlink(self.DATA)
shutil.copyfile(self.FOO, self.DATA)
stages = self.dvc.reproduce(self._get_stage_target(stage))
self.assertEqual(len(stages), 2)
class TestReproNoDeps(TestRepro):
def test(self):
out = "out"
code_file = "out.py"
stage_file = "out.dvc"
code = (
'import uuid\nwith open("{}", "w+") as fd:\n'
"\tfd.write(str(uuid.uuid4()))\n".format(out)
)
with open(code_file, "w+") as fd:
fd.write(code)
stage = self._run(
fname=stage_file,
outs=[out],
cmd=f"python {code_file}",
name="uuid",
)
stages = self.dvc.reproduce(self._get_stage_target(stage))
self.assertEqual(len(stages), 1)
class TestReproForce(TestRepro):
def test(self):
stages = self.dvc.reproduce(
self._get_stage_target(self.stage), force=True
)
self.assertEqual(len(stages), 2)
class TestReproChangedCode(TestRepro):
def test(self):
self.swap_code()
stages = self.dvc.reproduce(self._get_stage_target(self.stage))
self.assertTrue(filecmp.cmp(self.file1, self.BAR, shallow=False))
self.assertEqual(len(stages), 1)
def swap_code(self):
os.unlink(self.CODE)
new_contents = self.CODE_CONTENTS
new_contents += "\nshutil.copyfile('{}', " "sys.argv[2])\n".format(
self.BAR
)
self.create(self.CODE, new_contents)
class TestReproChangedData(TestRepro):
def test(self):
self.swap_foo_with_bar()
stages = self.dvc.reproduce(self._get_stage_target(self.stage))
self.assertTrue(filecmp.cmp(self.file1, self.BAR, shallow=False))
self.assertEqual(len(stages), 2)
def swap_foo_with_bar(self):
os.unlink(self.FOO)
shutil.copyfile(self.BAR, self.FOO)
class TestReproDry(TestReproChangedData):
def test(self):
self.swap_foo_with_bar()
stages = self.dvc.reproduce(
self._get_stage_target(self.stage), dry=True
)
self.assertTrue(len(stages), 2)
self.assertFalse(filecmp.cmp(self.file1, self.BAR, shallow=False))
ret = main(["repro", "--dry", self._get_stage_target(self.stage)])
self.assertEqual(ret, 0)
self.assertFalse(filecmp.cmp(self.file1, self.BAR, shallow=False))
class TestReproUpToDate(TestRepro):
def test(self):
ret = main(["repro", self._get_stage_target(self.stage)])
self.assertEqual(ret, 0)
class TestReproDryNoExec(TestDvc):
def test(self):
deps = []
for d in range(3):
idir = f"idir{d}"
odir = f"odir{d}"
deps.append("-d")
deps.append(odir)
os.mkdir(idir)
f = os.path.join(idir, "file")
with open(f, "w+") as fobj:
fobj.write(str(d))
ret = main(
[
"run",
"--no-exec",
"--single-stage",
"-d",
idir,
"-o",
odir,
"python -c 'import shutil; "
'shutil.copytree("{}", "{}")\''.format(idir, odir),
]
)
self.assertEqual(ret, 0)
ret = main(
["run", "--no-exec", "--single-stage", "-f", DVC_FILE] + deps
)
self.assertEqual(ret, 0)
ret = main(["repro", "--dry", DVC_FILE])
self.assertEqual(ret, 0)
class TestReproChangedDeepData(TestReproChangedData):
def setUp(self):
super().setUp()
self.file2 = "file2"
self.stage = self._run(
fname=self.file2 + ".dvc",
outs=[self.file2],
deps=[self.file1, self.CODE],
cmd=f"python {self.CODE} {self.file1} {self.file2}",
name="copy-file-file2",
)
def test(self):
self.swap_foo_with_bar()
stages = self.dvc.reproduce(self._get_stage_target(self.stage))
self.assertTrue(filecmp.cmp(self.file1, self.BAR, shallow=False))
self.assertTrue(filecmp.cmp(self.file2, self.BAR, shallow=False))
self.assertEqual(len(stages), 3)
class TestReproForceDownstream(TestDvc):
def test(self):
stages = self.dvc.add(self.FOO)
self.assertEqual(len(stages), 1)
foo_stage = stages[0]
self.assertTrue(foo_stage is not None)
code1 = "code1.py"
shutil.copyfile(self.CODE, code1)
file1 = "file1"
file1_stage = self.dvc.run(
outs=[file1],
deps=[self.FOO, code1],
cmd=f"python {code1} {self.FOO} {file1}",
single_stage=True,
)
self.assertTrue(file1_stage is not None)
code2 = "code2.py"
shutil.copyfile(self.CODE, code2)
file2 = "file2"
file2_stage = self.dvc.run(
outs=[file2],
deps=[file1, code2],
cmd=f"python {code2} {file1} {file2}",
single_stage=True,
)
self.assertTrue(file2_stage is not None)
code3 = "code3.py"
shutil.copyfile(self.CODE, code3)
file3 = "file3"
file3_stage = self.dvc.run(
outs=[file3],
deps=[file2, code3],
cmd=f"python {code3} {file2} {file3}",
single_stage=True,
)
self.assertTrue(file3_stage is not None)
with open(code2, "a") as fobj:
fobj.write("\n\n")
stages = self.dvc.reproduce(file3_stage.path, force_downstream=True)
self.assertEqual(len(stages), 2)
self.assertEqual(stages[0].path, file2_stage.path)
self.assertEqual(stages[1].path, file3_stage.path)
class TestReproPipeline(TestReproChangedDeepData):
def test(self):
stages = self.dvc.reproduce(
self._get_stage_target(self.stage), force=True, pipeline=True
)
self.assertEqual(len(stages), 3)
def test_cli(self):
ret = main(
["repro", "--pipeline", "-f", self._get_stage_target(self.stage)]
)
self.assertEqual(ret, 0)
class TestReproPipelines(SingleStageRun, TestDvc):
def setUp(self):
super().setUp()
stages = self.dvc.add(self.FOO)
self.assertEqual(len(stages), 1)
self.foo_stage = stages[0]
self.assertTrue(self.foo_stage is not None)
stages = self.dvc.add(self.BAR)
self.assertEqual(len(stages), 1)
self.bar_stage = stages[0]
self.assertTrue(self.bar_stage is not None)
self.file1 = "file1"
self.file1_stage = self.dvc.run(
fname=self.file1 + ".dvc",
outs=[self.file1],
deps=[self.FOO, self.CODE],
cmd=f"python {self.CODE} {self.FOO} {self.file1}",
single_stage=True,
)
self.file2 = "file2"
self.file2_stage = self._run(
fname=self.file2 + ".dvc",
outs=[self.file2],
deps=[self.BAR, self.CODE],
cmd=f"python {self.CODE} {self.BAR} {self.file2}",
name="copy-BAR-file2",
)
def test(self):
stages = self.dvc.reproduce(all_pipelines=True, force=True)
self.assertEqual(len(stages), 4)
self.assertTrue(self.file1_stage in stages)
self.assertTrue(self.file2_stage in stages)
def test_cli(self):
ret = main(["repro", "-f", "-P"])
self.assertEqual(ret, 0)
class TestReproLocked(TestReproChangedData):
def test(self):
file2 = "file2"
file2_stage = self._run(
fname=file2 + ".dvc",
outs=[file2],
deps=[self.file1, self.CODE],
cmd=f"python {self.CODE} {self.file1} {file2}",
name="copy-file1-file2",
)
self.swap_foo_with_bar()
ret = main(["lock", self._get_stage_target(file2_stage)])
self.assertEqual(ret, 0)
stages = self.dvc.reproduce(self._get_stage_target(file2_stage))
self.assertEqual(len(stages), 0)
ret = main(["unlock", self._get_stage_target(file2_stage)])
self.assertEqual(ret, 0)
stages = self.dvc.reproduce(self._get_stage_target(file2_stage))
self.assertTrue(filecmp.cmp(self.file1, self.BAR, shallow=False))
self.assertTrue(filecmp.cmp(file2, self.BAR, shallow=False))
self.assertEqual(len(stages), 3)
def test_non_existing(self):
with self.assertRaises(StageFileDoesNotExistError):
self.dvc.lock_stage("Dvcfile")
self.dvc.lock_stage("pipelines.yaml")
self.dvc.lock_stage("pipelines.yaml:name")
self.dvc.lock_stage("Dvcfile:name")
self.dvc.lock_stage("stage.dvc")
self.dvc.lock_stage("stage.dvc:name")
self.dvc.lock_stage("not-existing-stage.json")
ret = main(["lock", "non-existing-stage"])
self.assertNotEqual(ret, 0)
class TestReproLockedCallback(SingleStageRun, TestDvc):
def test(self):
file1 = "file1"
file1_stage = file1 + ".dvc"
# NOTE: purposefully not specifying dependencies
# to create a callback stage.
stage = self._run(
fname=file1_stage,
outs=[file1],
cmd=f"python {self.CODE} {self.FOO} {file1}",
name="copy-FOO-file1",
)
self.assertTrue(stage is not None)
stages = self.dvc.reproduce(self._get_stage_target(stage))
self.assertEqual(len(stages), 1)
self.dvc.lock_stage(self._get_stage_target(stage))
stages = self.dvc.reproduce(self._get_stage_target(stage))
self.assertEqual(len(stages), 0)
self.dvc.lock_stage(self._get_stage_target(stage), unlock=True)
stages = self.dvc.reproduce(self._get_stage_target(stage))
self.assertEqual(len(stages), 1)
class TestReproLockedUnchanged(TestRepro):
def test(self):
"""
Check that locking/unlocking doesn't affect stage state
"""
target = self._get_stage_target(self.stage)
self.dvc.lock_stage(target)
stages = self.dvc.reproduce(target)
self.assertEqual(len(stages), 0)
self.dvc.lock_stage(target, unlock=True)
stages = self.dvc.reproduce(target)
self.assertEqual(len(stages), 0)
class TestReproMetricsAddUnchanged(TestDvc):
def test(self):
"""
Check that adding/removing metrics doesn't affect stage state
"""
stages = self.dvc.add(self.FOO)
self.assertEqual(len(stages), 1)
self.assertTrue(stages[0] is not None)
file1 = "file1"
file1_stage = file1 + ".dvc"
self.dvc.run(
fname=file1_stage,
outs_no_cache=[file1],
deps=[self.FOO, self.CODE],
cmd=f"python {self.CODE} {self.FOO} {file1}",
single_stage=True,
)
stages = self.dvc.reproduce(file1_stage)
self.assertEqual(len(stages), 0)
self.dvc.metrics.add(file1)
stages = self.dvc.reproduce(file1_stage)
self.assertEqual(len(stages), 0)
self.dvc.metrics.remove(file1)
stages = self.dvc.reproduce(file1_stage)
self.assertEqual(len(stages), 0)
class TestReproPhony(TestReproChangedData):
def test(self):
stage = self._run(
cmd="cat " + self.file1, deps=[self.file1], name="no_cmd"
)
self.swap_foo_with_bar()
self.dvc.reproduce(self._get_stage_target(stage))
self.assertTrue(filecmp.cmp(self.file1, self.BAR, shallow=False))
class TestNonExistingOutput(TestRepro):
def test(self):
os.unlink(self.FOO)
with self.assertRaises(ReproductionError):
self.dvc.reproduce(self._get_stage_target(self.stage))
class TestReproDataSource(TestReproChangedData):
def test(self):
self.swap_foo_with_bar()
stages = self.dvc.reproduce(self.foo_stage.path)
self.assertTrue(filecmp.cmp(self.FOO, self.BAR, shallow=False))
self.assertEqual(stages[0].outs[0].checksum, file_md5(self.BAR)[0])
class TestReproChangedDir(SingleStageRun, TestDvc):
def test(self):
file_name = "file"
shutil.copyfile(self.FOO, file_name)
dir_name = "dir"
dir_code = "dir.py"
code = (
'import os; import shutil; os.mkdir("{}"); '
'shutil.copyfile("{}", os.path.join("{}", "{}"))'
)
with open(dir_code, "w+") as fd:
fd.write(code.format(dir_name, file_name, dir_name, file_name))
stage = self._run(
outs=[dir_name],
deps=[file_name, dir_code],
cmd=f"python {dir_code}",
name="copy-in-dir",
)
target = self._get_stage_target(stage)
stages = self.dvc.reproduce(target)
self.assertEqual(len(stages), 0)
os.unlink(file_name)
shutil.copyfile(self.BAR, file_name)
stages = self.dvc.reproduce(target)
self.assertEqual(len(stages), 1)
class TestReproChangedDirData(SingleStageRun, TestDvc):
def test(self):
dir_name = "dir"
dir_code = "dir_code.py"
with open(dir_code, "w+") as fd:
fd.write(
"import os; import sys; import shutil; "
"shutil.copytree(sys.argv[1], sys.argv[2])"
)
stage = self._run(
outs=[dir_name],
deps=[self.DATA_DIR, dir_code],
cmd=f"python {dir_code} {self.DATA_DIR} {dir_name}",
name="copy-dir",
)
target = self._get_stage_target(stage)
self.assertTrue(stage is not None)
stages = self.dvc.reproduce(target)
self.assertEqual(len(stages), 0)
with open(self.DATA_SUB, "a") as fd:
fd.write("add")
stages = self.dvc.reproduce(target)
self.assertEqual(len(stages), 1)
self.assertTrue(stages[0] is not None)
# Check that dvc indeed registers changed output dir
shutil.move(self.BAR, dir_name)
stages = self.dvc.reproduce(target)
self.assertEqual(len(stages), 1)
self.assertTrue(stages[0] is not None)
# Check that dvc registers mtime change for the directory.
System.hardlink(self.DATA_SUB, self.DATA_SUB + ".lnk")
stages = self.dvc.reproduce(target)
self.assertEqual(len(stages), 1)
self.assertTrue(stages[0] is not None)
class TestReproMissingMd5InStageFile(TestRepro):
def test(self):
d = load_stage_file(self.file1_stage)
del d[Stage.PARAM_OUTS][0][LocalRemote.PARAM_CHECKSUM]
del d[Stage.PARAM_DEPS][0][LocalRemote.PARAM_CHECKSUM]
dump_stage_file(self.file1_stage, d)
stages = self.dvc.reproduce(self.file1_stage)
self.assertEqual(len(stages), 1)
class TestCmdRepro(TestReproChangedData):
def test(self):
self.swap_foo_with_bar()
ret = main(["status"])
self.assertEqual(ret, 0)
ret = main(["repro", self._get_stage_target(self.stage)])
self.assertEqual(ret, 0)
ret = main(["repro", "non-existing-file"])
self.assertNotEqual(ret, 0)
class TestCmdReproChdir(TestDvc):
def test(self):
dname = "dir"
os.mkdir(dname)
foo = os.path.join(dname, self.FOO)
bar = os.path.join(dname, self.BAR)
code = os.path.join(dname, self.CODE)
shutil.copyfile(self.FOO, foo)
shutil.copyfile(self.CODE, code)
ret = main(
[
"run",
"--single-stage",
"-f",
f"{dname}/Dvcfile",
"-w",
f"{dname}",
"-d",
self.FOO,
"-o",
self.BAR,
f"python {self.CODE} {self.FOO} {self.BAR}",
]
)
self.assertEqual(ret, 0)
self.assertTrue(os.path.isfile(foo))
self.assertTrue(os.path.isfile(bar))
self.assertTrue(filecmp.cmp(foo, bar, shallow=False))
os.unlink(bar)
ret = main(["repro", "-c", dname, DVC_FILE])
self.assertEqual(ret, 0)
self.assertTrue(os.path.isfile(foo))
self.assertTrue(os.path.isfile(bar))
self.assertTrue(filecmp.cmp(foo, bar, shallow=False))
class TestReproExternalBase(SingleStageRun, TestDvc):
cache_type = None
@staticmethod
def should_test():
return False
@property
def cache_scheme(self):
return self.scheme
@property
def scheme(self):
return None
@property
def scheme_sep(self):
return "://"
@property
def sep(self):
return "/"
def check_already_cached(self, stage):
stage.outs[0].remove()
patch_download = patch.object(
stage.deps[0], "download", wraps=stage.deps[0].download
)
patch_checkout = patch.object(
stage.outs[0], "checkout", wraps=stage.outs[0].checkout
)
from dvc.stage.run import cmd_run
patch_run = patch("dvc.stage.run.cmd_run", wraps=cmd_run)
with self.dvc.lock, self.dvc.state:
with patch_download as mock_download:
with patch_checkout as mock_checkout:
with patch_run as mock_run:
stage.locked = False
stage.run()
stage.locked = True
mock_run.assert_not_called()
mock_download.assert_not_called()
mock_checkout.assert_called_once()
@patch("dvc.prompt.confirm", return_value=True)
def test(self, mock_prompt):
if not self.should_test():
raise SkipTest(f"Test {self.__class__.__name__} is disabled")
cache = (
self.scheme
+ self.scheme_sep
+ self.bucket
+ self.sep
+ str(uuid.uuid4())
)
ret = main(["config", "cache." + self.cache_scheme, "myrepo"])
self.assertEqual(ret, 0)
ret = main(["remote", "add", "myrepo", cache])
self.assertEqual(ret, 0)
if self.cache_type:
ret = main(["remote", "modify", "myrepo", "type", self.cache_type])
self.assertEqual(ret, 0)
remote_name = "myremote"
remote_key = str(uuid.uuid4())
remote = (
self.scheme + self.scheme_sep + self.bucket + self.sep + remote_key
)
ret = main(["remote", "add", remote_name, remote])
self.assertEqual(ret, 0)
if self.cache_type:
ret = main(
["remote", "modify", remote_name, "type", self.cache_type]
)
self.assertEqual(ret, 0)
self.dvc = DvcRepo(".")
foo_key = remote_key + self.sep + self.FOO
bar_key = remote_key + self.sep + self.BAR
foo_path = (
self.scheme + self.scheme_sep + self.bucket + self.sep + foo_key
)
bar_path = (
self.scheme + self.scheme_sep + self.bucket + self.sep + bar_key
)
# Using both plain and remote notation
out_foo_path = "remote://" + remote_name + "/" + self.FOO
out_bar_path = bar_path
self.write(self.bucket, foo_key, self.FOO_CONTENTS)
import_stage = self.dvc.imp_url(out_foo_path, "import")
self.assertTrue(os.path.exists("import"))
self.assertTrue(filecmp.cmp("import", self.FOO, shallow=False))
self.assertEqual(self.dvc.status([import_stage.path]), {})
self.check_already_cached(import_stage)
import_remote_stage = self.dvc.imp_url(
out_foo_path, out_foo_path + "_imported"
)
self.assertEqual(self.dvc.status([import_remote_stage.path]), {})
cmd_stage = self._run(
outs=[out_bar_path],
deps=[out_foo_path],
cmd=self.cmd(foo_path, bar_path),
name="external-base",
)
self.assertEqual(self.dvc.status([cmd_stage.addressing]), {})
self.assertEqual(self.dvc.status(), {})
self.check_already_cached(cmd_stage)
self.write(self.bucket, foo_key, self.BAR_CONTENTS)
self.assertNotEqual(self.dvc.status(), {})
self.dvc.update([import_stage.path])
self.assertTrue(os.path.exists("import"))
self.assertTrue(filecmp.cmp("import", self.BAR, shallow=False))
self.assertEqual(self.dvc.status([import_stage.path]), {})
self.dvc.update([import_remote_stage.path])
self.assertEqual(self.dvc.status([import_remote_stage.path]), {})
stages = self.dvc.reproduce(cmd_stage.addressing)
self.assertEqual(len(stages), 1)
self.assertEqual(self.dvc.status([cmd_stage.addressing]), {})
self.assertEqual(self.dvc.status(), {})
self.dvc.gc(workspace=True)
self.assertEqual(self.dvc.status(), {})
self.dvc.remove(cmd_stage.path, dvc_only=True)
self.assertNotEqual(self.dvc.status([cmd_stage.addressing]), {})
self.dvc.checkout([cmd_stage.path], force=True)
self.assertEqual(self.dvc.status([cmd_stage.addressing]), {})
@pytest.mark.skipif(os.name == "nt", reason="temporarily disabled on windows")
class TestReproExternalS3(S3, TestReproExternalBase):
@property
def scheme(self):
return "s3"
@property
def bucket(self):
return TEST_AWS_REPO_BUCKET
def cmd(self, i, o):
return f"aws s3 cp {i} {o}"
def write(self, bucket, key, body):
s3 = boto3.client("s3")
s3.put_object(Bucket=bucket, Key=key, Body=body)
class TestReproExternalGS(GCP, TestReproExternalBase):
@property
def scheme(self):
return "gs"
@property
def bucket(self):
return TEST_GCP_REPO_BUCKET
def cmd(self, i, o):
return f"gsutil cp {i} {o}"
def write(self, bucket, key, body):
client = gc.Client()
bucket = client.bucket(bucket)
bucket.blob(key).upload_from_string(body)
class TestReproExternalHDFS(HDFS, TestReproExternalBase):
@property
def scheme(self):
return "hdfs"
@property
def bucket(self):
return f"{getpass.getuser()}@127.0.0.1"
def cmd(self, i, o):
return f"hadoop fs -cp {i} {o}"
def write(self, bucket, key, body):
url = self.scheme + "://" + bucket + "/" + key
p = Popen(
f"hadoop fs -rm -f {url}",
shell=True,
executable=os.getenv("SHELL"),
stdin=PIPE,
stdout=PIPE,
stderr=PIPE,
)
p.communicate()
p = Popen(
"hadoop fs -mkdir -p {}".format(posixpath.dirname(url)),
shell=True,
executable=os.getenv("SHELL"),
stdin=PIPE,
stdout=PIPE,
stderr=PIPE,
)
out, err = p.communicate()
if p.returncode != 0:
print(out)
print(err)
self.assertEqual(p.returncode, 0)
with open("tmp", "w+") as fd:
fd.write(body)
p = Popen(
"hadoop fs -copyFromLocal {} {}".format("tmp", url),
shell=True,
executable=os.getenv("SHELL"),
stdin=PIPE,
stdout=PIPE,
stderr=PIPE,
)
out, err = p.communicate()
if p.returncode != 0:
print(out)
print(err)
self.assertEqual(p.returncode, 0)
@flaky(max_runs=3, min_passes=1)
class TestReproExternalSSH(SSH, TestReproExternalBase):
_dir = None
cache_type = "copy"
@property
def scheme(self):
return "ssh"
@property
def bucket(self):
if not self._dir:
self._dir = self.mkdtemp()
return f"{getpass.getuser()}@127.0.0.1:{self._dir}"
def cmd(self, i, o):
prefix = "ssh://"
assert i.startswith(prefix) and o.startswith(prefix)
i = i[len(prefix) :]
o = o[len(prefix) :]
return f"scp {i} {o}"
def write(self, bucket, key, body):
path = posixpath.join(self._dir, key)
ssh = paramiko.SSHClient()
ssh.load_system_host_keys()
ssh.set_missing_host_key_policy(paramiko.AutoAddPolicy())
ssh.connect("127.0.0.1")
sftp = ssh.open_sftp()
try:
sftp.stat(path)
sftp.remove(path)
except OSError:
pass
stdin, stdout, stderr = ssh.exec_command(f"mkdir -p $(dirname {path})")
self.assertEqual(stdout.channel.recv_exit_status(), 0)
with sftp.open(path, "w+") as fobj:
fobj.write(body)
class TestReproExternalLOCAL(Local, TestReproExternalBase):
cache_type = "hardlink"
def setUp(self):
super().setUp()
self.tmpdir = self.mkdtemp()
ret = main(["config", "cache.type", "hardlink"])
self.assertEqual(ret, 0)
self.dvc = DvcRepo(".")
@property
def cache_scheme(self):
return "local"
@property
def scheme(self):
return ""
@property
def scheme_sep(self):
return ""
@property
def sep(self):
return os.sep
@property
def bucket(self):
return self.tmpdir
def cmd(self, i, o):
if os.name == "nt":
return f"copy {i} {o}"
return f"cp {i} {o}"
def write(self, bucket, key, body):
path = os.path.join(bucket, key)
dname = os.path.dirname(path)
if not os.path.exists(dname):
os.makedirs(dname)
with open(path, "w+") as fd:
fd.write(body)
class TestReproExternalHTTP(TestReproExternalBase):
_external_cache_id = None
@staticmethod
def get_remote(port):
return f"http://localhost:{port}/"
@property
def local_cache(self):
return os.path.join(self.dvc.dvc_dir, "cache")
def test(self):
# Import
with StaticFileServer() as httpd:
import_url = urljoin(self.get_remote(httpd.server_port), self.FOO)
import_output = "imported_file"
import_stage = self.dvc.imp_url(import_url, import_output)
self.assertTrue(os.path.exists(import_output))
self.assertTrue(filecmp.cmp(import_output, self.FOO, shallow=False))
self.dvc.remove("imported_file.dvc")
with StaticFileServer(handler_class=ContentMD5Handler) as httpd:
import_url = urljoin(self.get_remote(httpd.server_port), self.FOO)
import_output = "imported_file"
import_stage = self.dvc.imp_url(import_url, import_output)
self.assertTrue(os.path.exists(import_output))
self.assertTrue(filecmp.cmp(import_output, self.FOO, shallow=False))
# Run --deps
with StaticFileServer() as httpd:
remote = self.get_remote(httpd.server_port)
cache_id = str(uuid.uuid4())
cache = urljoin(remote, cache_id)
ret1 = main(["remote", "add", "mycache", cache])
ret2 = main(["remote", "add", "myremote", remote])
self.assertEqual(ret1, 0)
self.assertEqual(ret2, 0)
self.dvc = DvcRepo(".")
run_dependency = urljoin(remote, self.BAR)
run_output = "remote_file"
cmd = f'open("{run_output}", "w+")'
with open("create-output.py", "w") as fd:
fd.write(cmd)
run_stage = self._run(
deps=[run_dependency],
outs=[run_output],
cmd="python create-output.py",
name="http_run",
)
self.assertTrue(run_stage is not None)
self.assertTrue(os.path.exists(run_output))
# Pull
self.dvc.remove(import_stage.path, dvc_only=True)
self.assertFalse(os.path.exists(import_output))
shutil.move(self.local_cache, cache_id)
self.assertFalse(os.path.exists(self.local_cache))
self.dvc.pull([import_stage.path], remote="mycache")
self.assertTrue(os.path.exists(import_output))
class TestReproShell(TestDvc):
def test(self):
if os.name == "nt":
return
fname = "shell.txt"
stage = fname + ".dvc"
self.dvc.run(
fname=stage,
outs=[fname],
cmd=f"echo $SHELL > {fname}",
single_stage=True,
)
with open(fname) as fd:
self.assertEqual(os.getenv("SHELL"), fd.read().strip())
os.unlink(fname)
self.dvc.reproduce(stage)
with open(fname) as fd:
self.assertEqual(os.getenv("SHELL"), fd.read().strip())
class TestReproAllPipelines(SingleStageRun, TestDvc):
def test(self):
stages = [
self._run(
fname="start.dvc",
outs=["start.txt"],
cmd="echo start > start.txt",
name="start",
),
self._run(
fname="middle.dvc",
deps=["start.txt"],
outs=["middle.txt"],
cmd="echo middle > middle.txt",
name="middle",
),
self._run(
fname="final.dvc",
deps=["middle.txt"],
outs=["final.txt"],
cmd="echo final > final.txt",
name="final",
),
self._run(
fname="disconnected.dvc",
outs=["disconnected.txt"],
cmd="echo other > disconnected.txt",
name="disconnected",
),
]
from dvc.state import StateNoop
self.dvc.state = StateNoop()
with patch.object(
Stage, "reproduce", side_effect=stages
) as mock_reproduce:
ret = main(["repro", "--all-pipelines"])
self.assertEqual(ret, 0)
self.assertEqual(mock_reproduce.call_count, 4)
class TestReproNoCommit(TestRepro):
def test(self):
remove(self.dvc.cache.local.cache_dir)
ret = main(
["repro", self._get_stage_target(self.stage), "--no-commit"]
)
self.assertEqual(ret, 0)
self.assertEqual(os.listdir(self.dvc.cache.local.cache_dir), ["runs"])
class TestReproAlreadyCached(TestRepro):
def test(self):
stage = self._run(
fname="datetime.dvc",
deps=[],
outs=["datetime.txt"],
cmd='python -c "import time; print(time.time())" > datetime.txt',
name="datetime",
)
run_out = stage.outs[0]
repro_out = self.dvc.reproduce(self._get_stage_target(stage))[0].outs[
0
]
self.assertNotEqual(run_out.checksum, repro_out.checksum)
def test_force_with_dependencies(self):
run_out = self.dvc.run(
fname="datetime.dvc",
deps=[self.FOO],
outs=["datetime.txt"],
cmd='python -c "import time; print(time.time())" > datetime.txt',
single_stage=True,
).outs[0]
ret = main(["repro", "--force", "datetime.dvc"])
self.assertEqual(ret, 0)
repro_out = Dvcfile(self.dvc, "datetime.dvc").stage.outs[0]
self.assertNotEqual(run_out.checksum, repro_out.checksum)
def test_force_import(self):
ret = main(["import-url", self.FOO, self.BAR])
self.assertEqual(ret, 0)
patch_download = patch.object(
LocalRemote,
"download",
side_effect=LocalRemote.download,
autospec=True,
)
patch_checkout = patch.object(
BaseOutput,
"checkout",
side_effect=BaseOutput.checkout,
autospec=True,
)
with patch_download as mock_download:
with patch_checkout as mock_checkout:
assert main(["unlock", "bar.dvc"]) == 0
ret = main(["repro", "--force", "bar.dvc"])
self.assertEqual(ret, 0)
self.assertEqual(mock_download.call_count, 1)
self.assertEqual(mock_checkout.call_count, 0)
class TestShouldDisplayMetricsOnReproWithMetricsOption(TestDvc):
def test(self):
metrics_file = "metrics_file"
metrics_value = 0.123489015
ret = main(
[
"run",
"--single-stage",
"-m",
metrics_file,
f"echo {metrics_value} >> {metrics_file}",
]
)
self.assertEqual(0, ret)
self._caplog.clear()
from dvc.dvcfile import DVC_FILE_SUFFIX
ret = main(
["repro", "--force", "--metrics", metrics_file + DVC_FILE_SUFFIX]
)
self.assertEqual(0, ret)
expected_metrics_display = f"{metrics_file}: {metrics_value}"
self.assertIn(expected_metrics_display, self._caplog.text)
@pytest.fixture
def repro_dir(tmp_dir, dvc, run_copy):
# Creates repo with following structure:
# data_dir/dir_file origin_data
# | | |
# | | origin_copy.dvc
# unrelated2.dvc | | |
# | | unrelated1.dvc
# dir/subdir/dir_file_copy.dvc |
# | |
# | dir/origin_copy_2.dvc
# | |
# \ /
# \ /
# dir/Dvcfile
tmp_dir.gen(
{
"origin_data": "origin data content",
"data_dir": {"dir_file": "dir file content"},
"dir": {"subdir": {}},
}
)
stages = {}
origin_copy = tmp_dir / "origin_copy"
stage = run_copy("origin_data", os.fspath(origin_copy), single_stage=True)
assert stage is not None
assert origin_copy.read_text() == "origin data content"
stages["origin_copy"] = stage
origin_copy_2 = tmp_dir / "dir" / "origin_copy_2"
stage = run_copy(
os.fspath(origin_copy),
os.fspath(origin_copy_2),
fname=os.fspath(origin_copy_2) + ".dvc",
single_stage=True,
)
assert stage is not None
assert origin_copy_2.read_text() == "origin data content"
stages["origin_copy_2"] = stage
dir_file_path = tmp_dir / "data_dir" / "dir_file"
dir_file_copy = tmp_dir / "dir" / "subdir" / "dir_file_copy"
stage = run_copy(
os.fspath(dir_file_path),
os.fspath(dir_file_copy),
fname=os.fspath(dir_file_copy) + ".dvc",
single_stage=True,
)
assert stage is not None
assert dir_file_copy.read_text() == "dir file content"
stages["dir_file_copy"] = stage
last_stage = tmp_dir / "dir" / DVC_FILE
stage = dvc.run(
fname=os.fspath(last_stage),
deps=[os.fspath(origin_copy_2), os.fspath(dir_file_copy)],
single_stage=True,
)
assert stage is not None
stages["last_stage"] = stage
# Unrelated are to verify that reproducing `dir` will not trigger them too
assert (
run_copy(os.fspath(origin_copy), "unrelated1", single_stage=True)
is not None
)
assert (
run_copy(os.fspath(dir_file_path), "unrelated2", single_stage=True)
is not None
)
yield stages
def _rewrite_file(path_elements, new_content):
if isinstance(path_elements, str):
path_elements = [path_elements]
file = Path(os.sep.join(path_elements))
file.unlink()
file.write_text(new_content)
def _read_out(stage):
return Path(stage.outs[0].fspath).read_text()
def test_recursive_repro_default(dvc, repro_dir):
"""
Test recursive repro on dir after a dep outside this dir has changed.
"""
_rewrite_file("origin_data", "new origin data content")
stages = dvc.reproduce("dir", recursive=True)
# Check that the dependency ("origin_copy") and the dependent stages
# inside the folder have been reproduced ("origin_copy_2", "last_stage")
assert stages == [
repro_dir["origin_copy"],
repro_dir["origin_copy_2"],
repro_dir["last_stage"],
]
assert _read_out(repro_dir["origin_copy"]) == "new origin data content"
assert _read_out(repro_dir["origin_copy_2"]) == "new origin data content"
def test_recursive_repro_single(dvc, repro_dir):
"""
Test recursive single-item repro on dir
after a dep outside this dir has changed.
"""
_rewrite_file("origin_data", "new origin content")
_rewrite_file(["data_dir", "dir_file"], "new dir file content")
stages = dvc.reproduce("dir", recursive=True, single_item=True)
# Check that just stages inside given dir
# with changed direct deps have been reproduced.
# This means that "origin_copy_2" stage should not be reproduced
# since it depends on "origin_copy".
# Also check that "dir_file_copy" stage was reproduced before "last_stage"
assert stages == [repro_dir["dir_file_copy"], repro_dir["last_stage"]]
assert _read_out(repro_dir["dir_file_copy"]) == "new dir file content"
def test_recursive_repro_single_force(dvc, repro_dir):
"""
Test recursive single-item force repro on dir
without any dependencies changing.
"""
stages = dvc.reproduce("dir", recursive=True, single_item=True, force=True)
# Check that all stages inside given dir have been reproduced
# Also check that "dir_file_copy" stage was reproduced before "last_stage"
# and that "origin_copy" stage was reproduced before "last_stage" stage
assert len(stages) == 3
assert set(stages) == {
repro_dir["origin_copy_2"],
repro_dir["dir_file_copy"],
repro_dir["last_stage"],
}
assert stages.index(repro_dir["origin_copy_2"]) < stages.index(
repro_dir["last_stage"]
)
assert stages.index(repro_dir["dir_file_copy"]) < stages.index(
repro_dir["last_stage"]
)
def test_recursive_repro_empty_dir(tmp_dir, dvc):
"""
Test recursive repro on an empty directory
"""
(tmp_dir / "emptydir").mkdir()
stages = dvc.reproduce("emptydir", recursive=True, force=True)
assert stages == []
def test_recursive_repro_recursive_missing_file(dvc):
"""
Test recursive repro on a missing file
"""
with pytest.raises(StageFileDoesNotExistError):
dvc.reproduce("notExistingStage.dvc", recursive=True)
with pytest.raises(StageFileDoesNotExistError):
dvc.reproduce("notExistingDir/", recursive=True)
def test_recursive_repro_on_stage_file(dvc, repro_dir):
"""
Test recursive repro on a stage file instead of directory
"""
stages = dvc.reproduce(
repro_dir["origin_copy_2"].relpath, recursive=True, force=True
)
assert stages == [repro_dir["origin_copy"], repro_dir["origin_copy_2"]]
def test_dvc_formatting_retained(tmp_dir, dvc, run_copy):
tmp_dir.dvc_gen("foo", "foo content")
stage = run_copy(
"foo", "foo_copy", fname="foo_copy.dvc", single_stage=True
)
stage_path = tmp_dir / stage.relpath
# Add comments and custom formatting to DVC-file
lines = list(map(_format_dvc_line, stage_path.read_text().splitlines()))
lines.insert(0, "# Starting comment")
stage_text = "".join(line + "\n" for line in lines)
stage_path.write_text(stage_text)
# Rewrite data source and repro
(tmp_dir / "foo").write_text("new foo")
dvc.reproduce("foo_copy.dvc", force=True)
assert _hide_md5(stage_text) == _hide_md5(stage_path.read_text())
def _format_dvc_line(line):
# Add line comment for all cache and md5 keys
if "cache:" in line or "md5:" in line:
return line + " # line comment"
# Format command as one word per line
elif line.startswith("cmd: "):
pre, command = line.split(None, 1)
return pre + " >\n" + "\n".join(" " + s for s in command.split())
else:
return line
def _hide_md5(text):
return re.sub(r"\b[a-f0-9]{32}\b", "<md5>", text)
def test_downstream(dvc):
# The dependency graph should look like this:
#
# E
# / \
# D F
# / \ \
# B C G
# \ /
# A
#
assert main(["run", "--single-stage", "-o", "A", "echo A>A"]) == 0
assert (
main(["run", "--single-stage", "-d", "A", "-o", "B", "echo B>B"]) == 0
)
assert (
main(["run", "--single-stage", "-d", "A", "-o", "C", "echo C>C"]) == 0
)
assert (
main(
[
"run",
"--single-stage",
"-d",
"B",
"-d",
"C",
"-o",
"D",
"echo D>D",
]
)
== 0
)
assert main(["run", "--single-stage", "-o", "G", "echo G>G"]) == 0
assert (
main(["run", "--single-stage", "-d", "G", "-o", "F", "echo F>F"]) == 0
)
assert (
main(
[
"run",
"--single-stage",
"-d",
"D",
"-d",
"F",
"-o",
"E",
"echo E>E",
]
)
== 0
)
# We want the evaluation to move from B to E
#
# E
# /
# D
# /
# B
#
evaluation = dvc.reproduce("B.dvc", downstream=True, force=True)
assert len(evaluation) == 3
assert evaluation[0].relpath == "B.dvc"
assert evaluation[1].relpath == "D.dvc"
assert evaluation[2].relpath == "E.dvc"
# B, C should be run (in any order) before D
# See https://github.com/iterative/dvc/issues/3602
evaluation = dvc.reproduce("A.dvc", downstream=True, force=True)
assert len(evaluation) == 5
assert evaluation[0].relpath == "A.dvc"
assert {evaluation[1].relpath, evaluation[2].relpath} == {"B.dvc", "C.dvc"}
assert evaluation[3].relpath == "D.dvc"
assert evaluation[4].relpath == "E.dvc"
@pytest.mark.skipif(
os.name == "nt",
reason="external output scenario is not supported on Windows",
)
def test_ssh_dir_out(tmp_dir, dvc, ssh_server):
tmp_dir.gen({"foo": "foo content"})
# Set up remote and cache
user = ssh_server.test_creds["username"]
port = ssh_server.port
keyfile = ssh_server.test_creds["key_filename"]
remote_url = SSHMocked.get_url(user, port)
assert main(["remote", "add", "upstream", remote_url]) == 0
assert main(["remote", "modify", "upstream", "keyfile", keyfile]) == 0
cache_url = SSHMocked.get_url(user, port)
assert main(["remote", "add", "sshcache", cache_url]) == 0
assert main(["config", "cache.ssh", "sshcache"]) == 0
assert main(["remote", "modify", "sshcache", "keyfile", keyfile]) == 0
# Recreating to reread configs
repo = DvcRepo(dvc.root_dir)
# To avoid "WARNING: UNPROTECTED PRIVATE KEY FILE" from ssh
os.chmod(keyfile, 0o600)
(tmp_dir / "script.py").write_text(
"import sys, pathlib\n"
"path = pathlib.Path(sys.argv[1])\n"
"dir_out = path / 'dir-out'\n"
"dir_out.mkdir()\n"
"(dir_out / '1.txt').write_text('1')\n"
"(dir_out / '2.txt').write_text('2')\n"
)
url_info = URLInfo(remote_url)
repo.run(
cmd="python {} {}".format(tmp_dir / "script.py", url_info.path),
single_stage=True,
outs=["remote://upstream/dir-out"],
deps=["foo"], # add a fake dep to not consider this a callback
)
repo.reproduce("dir-out.dvc")
repo.reproduce("dir-out.dvc", force=True)