* use yaml 1.2 everywhere
This commit:
* gets rid of pyyaml
* uses ruamel everywhere
* tries to unite toml and yaml
However, this will require a few more changes that will come soonish.
Eg: Current `parse_yaml` and `parse_toml` behavior could be error-prone,
so, it's better to introduce `tree` inside these serialization methods
(which I will try to tackle next).
Another is, yaml load can be slow for json. We could speed it up just by
using `json.load(s)` here (also in upcoming patch).
* Fix tests
* Imports are no longer moved to top.
* `seed-isort-config` is no longer needed.
* Has a `black`-compatible profile/config.
* Also `isorts` the imports anywhere in the code
(not just at the top).
Also bumps `restyled-isort` to newest version
* dvc: get rid of is_walking_tree
No longer needed. Some applications of `isinstance()` will be refactored
in the future, as trees will just provide the needed functionality.
* dvc: move GitTree to dvc/tree/
* dvc: rename *RemoteTree to *Tree
* pylint: enable attribute-outside-init check
* fix tests
* Fix mock for time
This was an interesting one. I was mocking `time` on function definition
and then, using those later on test run. When all the tests were run, there
would be some delay that'd make tests fail. Hmmm ...
* pylint: enable checks for imports
* ci: add github action for pylint
* enable pylint on pre-commit
* Install requirements
* use local pylint installation rather than of pre-commit's
* fix import errors
* more checks
* Silence unused imports
* Make a copy of dict
* remote: move constants into trees
* remote: replace Remote() Cache() helper functions
* output: update for remote changes
* cache/data_cloud: update for remote changes
* dependency: update for remote changes
* stage: update for remote changes
* remote: move remaining non-index methods into tree
* tests: update remote unit tests
* remote: LocalCache needs to lock remote index, not cache index
* fix bugs from moved PARAM_CHECKSUM/PARAM_RELPATH
* tests: repo tree open needs state context
* remote: make Remote.gc a class method
* operates on obj.tree, so that GC can be done with both remote and
cache instances
* bug fixes
* tests: update test_data_cloud
* bug fixes
* tests: update func tests
* remote: move get_file_checksum() into tree
* makes RemoteTree and RepoTree consistent with regard to checksum
calculation
* remote: save() now takes explicit tree parameter
* when tree is remote.tree, save will be a move + link operation
(same as default existing behavior)
* when saving path from a different tree, save will be a copy operation
* tests: update for moved remote/tree functions
* remote: move get_checksum into tree
* remote: separate cloud remote and cache classes
* tests: update unit tests for remote/cache separation
* remote: cloud cache should extend cloud remote
* remote: move LocalRemote.get
* tests: update func tests
* dependency: update for moved get_checksum
* remote: fix state lookup bug
* BaseRemote: start moving tree functions into BaseRemoteTree
* remote: add LocalRemoteTree
* remote: add cloud remote trees
* remote: move remove(), makedirs() into tree
* remote: move move(), copy(), symlink(), hardlink(), reflink() into tree
* fix attributes for moved remote methods
* tests: update unit tests for moved remote tree methods
* tests: mv unit/remote/test_remote_dir.py unit/remote/test_remote_tree.py
* fix attributes for moved remote tree functions
* tests: update func tests for moved remote tree methods
* test fixes
* fix DS warnings
Fixes: #3678
When file has been already tracked under git, OutputAlreadyTrackedError gets raised.
This commits add git command suggestions to help user to stop tracking file from git,
so in future commits they can use DVC for the file.
Co-authored-by: Puneetha Pai <[email protected]>
* drop python 3.5 support
* dvc: remove fspath() use inside os.path calls
* dvc: replace dvc.compat.fspath with os.fspath
* tests: replace dvc.compat.fspath with os.fspath
* utils: relpath() should use fspath/str
* utils: os.readlink doesn't support path-like obj on Windows until 3.8
* dvc: use lockfile as yaml instead of json
* refactor Dvcfile into Pipeline file and Single stage file
* fix tests
* dvc: fix outputs
* add more tests for collection of outputs
* add tests for data cloud/get/import/ls
* tests: test for checkouts
* Allow other checksums other than md5
* tests: use iterdir instead of os.listdir
* cleanup errors reported by cc and ds
* utils: throw DvcException instead of plain Exception
* tests: use yaml.load instead of json.load
* run: split assignments
* Update dvc/stage/exceptions.py
Co-authored-by: Ruslan Kuprieiev <[email protected]>
* refactor stage into dvcfile
* Split create_stage out of dvcfile to Stage::create() and overwrite
* Remove logging from Repo::run
* tests: stop using --remove-outs
Co-authored-by: Ruslan Kuprieiev <[email protected]>
* dvc: refactor config
Advantages:
- read like a dict
- modify as a dict for testing or manipulation purposes
- wrap modifications into context manager to save them:
with config.edit("local") as conf:
conf["core"]["remote"] = "new-default"
Design decisions:
- dropped string constants
- remote sections are parsed into a simple subdict upon load
- remote config schema is now defined by url scheme
- relative paths are handled transparently upon load/save
- user config and remote manipulations are moved to commands
- same dev manipulations are done by simply modifying a config dict
* test: do not set cache.type for remotes that doesn't support it
* dvc: fix windows absolute paths validation in config
* test: fix windows separate drive test
* dvc: stylistic fixes in config
* add: auto convert absolute_path => relative
- fixes#2955
* use path_isin
* catch-all absolute paths in repo
* unneeded leftover
* revert realtive imports for later
* output: move abs2relpath from Base to Local
* output:local:fix parse_path
* remove path_info
* test:local versus base abs2relpath
* test:fix remaining abs2relpath test
* output: local path relative to wdir
* output: local: modify path before inheritance
* output: local: minor inheritance fix
* test: local: split output test
* test: local: positively explicit
Saugat Pachhai
Ruslan Kuprieiev
Peter Rowlands (변기호)
Puneetha PaiandPuneetha Pai
Casper da Costa-Luis
nik123
Paweł Redzyński
Alexander Schepanovski
Mr. Outis
Fábio Santos
Jorge Orpinel