Commit Graph
3302 Commits
Author SHA1 Message Date
Saugat Pachhai 21200c14df refactor webdav to use client; extract write_text to base (#5411) 2021-02-04 16:48:25 +05:45
Batuhan Taskaya ce554b6ae7 tree: Introduce the new .ls() API (#5275)
* s3: faster directory hashing

* Introduce Tree.info() API

* tests for s3

* Implement support for azure

* New .ls() API

* remove _iter_hashes from other trees

* assert recursive

* yield strings instead of file_infos

* Add GSTree.ls()

* Add DETAIL_FIELDS to the GSTree

* WebDAVTree.ls()

* proper webdav root directory initalization

* disable arguments-differ
2021-02-04 12:10:42 +02:00
Peter Rowlands (변기호) 982802effc experiments: bug fixes (#5407)
* exp run: display metrics on -m/--metrics

* exp show: fix sort handling
2021-02-04 16:42:22 +09:00
Ruslan Kuprieiev 985aef883e cli: config: rename --repo to --project (#5399)
Per https://github.com/iterative/dvc.org/pull/2064

Not changing the internal terminology because we stick to Repo in a lot
of places there and adjusting all of it would be wasteful. Maybe in the
future.
2021-02-03 17:13:53 +02:00
Batuhan Taskaya fc77618ad1 update: implement --to-remote flag (#5343)
* upload: implement --to-remote flag

* unit tests

* preserve frozen= for stage
2021-02-03 12:31:16 +02:00
Saugat Pachhai b2c2929869 pyarrow support for Python3.9 (#5391) 2021-02-02 17:31:11 +02:00
Batuhan Taskaya a92bfd272d get, get-url: add --jobs option (#5362) 2021-02-02 15:49:58 +02:00
Paweł Redzyński 31e4a3325d live integration: rename report to html (#5366) 2021-02-02 13:44:38 +01:00
Saugat Pachhai 67980de44d tests: mock global config dir for Updater (#5386) 2021-02-02 17:08:09 +05:45
Ruslan Kuprieiev 8932e0be84 dvc: get rid of can_be_skipped logic (#5385) 2021-02-02 13:13:48 +02:00
Saugat Pachhai 4348832b44 keep stage.dump and dvcfile.dump in sync (#5382) 2021-02-02 15:11:13 +05:45
Peter Rowlands (변기호) d05be36694 exp show: cleanup UI issues (#5361)
* exp show: add -n/--num to display the last N commits from HEAD

* exp run: fix empty commit with no changes

* add test for exp show with multiple commits

* allow -n greater than num commits in repo

* review fix
2021-02-02 11:35:02 +09:00
Peter Rowlands (변기호) 2ea5ef07dd exp apply: force apply by default (#5360)
* exp apply: force apply by default

* update tests
2021-02-02 11:07:19 +09:00
Saugat Pachhai b020918f5d stage:add: use remainder as a command script (#5350)
* stage:add use remainder as a command

* use -c for checkpoints

* use -n for stage name, make it required, fix tests
2021-02-01 17:50:04 +02:00
Batuhan Taskaya c84833bab1 params: support unicode characters (#5363)
* params: support unicode characters

* open remove() calls with utf-8
2021-02-01 15:56:53 +02:00
Piotr Bielak 3feaa86696 Pass missing glob flag to pull command (#5354)
The `--glob` flag is parsed from the command line, but in the
`CmdDataPull` class in the invocation the parameter (`self.args.glob`)
is not passed to the `pull` method implementation. Hence, always the
default value (False) is used. This commit fixes this issue and sets the
`glob` parameter properly.
2021-02-01 14:21:21 +02:00
Saugat Pachhai 131eb7b3a1 don't allow loading stages without cmd (#5373)
* don't allow loading stages without `cmd`

This was loosened when introducing parametrization.
But, `foreach`..`do` should be considered first
before stage's regular structure. And, cmd is made
required (as it should have been)

Related: #5371, #5370, #5312

* fix schema
2021-02-01 13:23:40 +05:45
Peter Rowlands (변기호) b771b06b25 tests: reduce checkpoint experiment iterations (#5352)
* exp tests: reduce default checkpoint run iterations from 5 to 2

* api: reduce make_checkpoint sleep interval
2021-02-01 14:20:51 +09:00
Peter Rowlands (변기호) 08300d3bcf experiments: drop exp resume in favor of auto-resuming in exp run (#5351)
* exp: auto determine checkpoint resume rev based on workspace state

* exp: add 'dvc exp reset' for reset/restarting checkpoints

* update tests

* fix reset usage
2021-01-29 13:18:20 +09:00
Batuhan Taskaya bb46043689 add: implement saving straight to cache (#5301)
* add: implement saving straight to cache

* Adjust CLI error cases to handle -o

* make tests pass on windows

* support explicit --jobs

* simplify the implementation a bit

* polish the tests
2021-01-28 14:42:58 +02:00
Ruslan Kuprieiev 969a85efb6 RepoTree: get rid if implicit fetching (#5324) 2021-01-27 02:01:09 +02:00
Saugat Pachhai b1d6918c5a stage collection: do not collect .gitignored dvcfiles (#5265)
* Do not collect .gitignored dvcfiles

* fix exc

* consistent error message

* fix imports

* add tests
2021-01-26 14:51:02 +02:00
Batuhan TaskayaandRuslan Kuprieiev a5e19ecd6a tree: Implement upload_fobj protocol to all trees (#5307)
* tree: Implement upload_fobj protocol to azure

* tree: Implement upload_fobj protocol to google storage

* tree: Implement upload_fobj protocol to google drive

* tree: Implement upload_fobj protocol to hdfs

* tree: Implement upload_fobj protocol to oss (alibaba cloud)

* tree: Implement upload_fobj protocol to webhdfs (also some cleanup)

* tree: Implement upload_fobj protocol to http/https

* Add _generate_download_url() to the HTTP (for tests)

* tree: Implement a temporary upload_fobj protocol to webdav/webdavs

* Unify progress bars

* Lazily evaluate the file size, for http uploads

* Remove copy_fobj protocol and _transfer_file_as_whole

* show progress bar on cache transfer

* Simplify s3 upload

* Remove CHUNK_SIZE (except for some special cases)

* remove concurrency restrictions

* Update dvc/tree/oss.py

Co-authored-by: Ruslan Kuprieiev <[email protected]>

Co-authored-by: Ruslan Kuprieiev <[email protected]>
2021-01-26 13:57:51 +02:00
Ruslan Kuprieiev 434cd305e9 dvc: ignore errors on protect/set_exec (#5335)
Both of these are not fatal and could safely be ignored.

Fixes #5255
2021-01-26 03:46:14 +02:00
Batuhan Taskaya ec82c3fff5 tests: azure directory generation (#5328) 2021-01-25 15:41:29 +02:00
Saugat Pachhai 9f0b86f221 unit.scm.test_git: use pytest instead of unittest (#5325) 2021-01-25 10:23:46 +05:45
Saugat Pachhai 3741f730e0 show git-add hint on stage:add, refactor scm_context (#5290)
* Refactor scm_context, show git-add hint on stage:add

* move tests
2021-01-24 22:43:38 +02:00
Paweł Redzyński 6a9c0c5ce5 live/checkpoints: test continue (#5300)
* live: test resuming

* initial test, not working

* experiments: introduce DVCLIVE_RESUME env variable on resume
2021-01-24 22:06:37 +02:00
Saugat Pachhai 1d8761e0c9 Remove empty file tests/unit/command/test_commit.py (#5316)
When I opened it, I got confused for a second and had to double-check if it was really empty.
The empty file gives a false assurance. We do need to add one, which I'll add later, but for now,
we better remove it.
2021-01-23 18:27:43 +05:45
Paweł Redzyński 2277a1a655 metrics/plots/params: return ordered (#5297)
* metrics/plots/params: return ordered

* metrics/params/plots: add tests for return order
2021-01-22 20:57:43 +02:00
Ruslan Kuprieiev cbd7472079 dvc: refactor cache saving (#5314) 2021-01-22 19:07:36 +02:00
Ruslan Kuprieiev c4888cbd7d dvc: get rid of ExternalRepo (#5309) 2021-01-21 23:03:53 +02:00
Timofey Yefimovandkarajan1001 60d83a74d7 dvcignore: Fix incorrect ignored output computation (#4986)
* dvcignore: Fix incorrect ignored output computation

* dvcignore: Fixed unignored patterns

Unignored patterns were shown in the dvc status output and caused Error.

Also made a bit of a refactoring in `matches` and `ignore`.

* dvcignore: Fix functional tests

Not sure if I follow, but tests assume that unignored files should trigger `check-ignore`. What was the intention?

* dvcignore: Fix stage.wdir being MagicMock

* Use `is_ignored` instead of `check_ignore`

1. use is_ignored to judge DVC ignore status.
2. use check_ignore to show ignore patterns.

* Solve tests fails

* Add a new tests

* Return to the old check_ignore logic.

* Pass the pylint

* Simplify ignore tests

Co-authored-by: karajan1001 <[email protected]>
2021-01-21 14:28:08 +02:00
Batuhan Taskaya b5068a9200 checkout: don't filter hash's if it is a file (#5298) 2021-01-20 12:36:47 +02:00
Ruslan Kuprieiev 03fc531a5c pylint: enable no-else-return (#5294)
From https://github.com/iterative/dvc/pull/5270#discussion_r559440586
2021-01-19 22:12:46 +02:00
Ruslan Kuprieiev d038bca05e tests: add basic [web]hdfs mockers (#5279) 2021-01-19 20:03:16 +02:00
Batuhan Taskaya 51ada6d272 Implement straight-to-remote functionality (#5198)
* Implement export-to-remote functionality

* Redistrubition of functionality from tree to remote

* Pass chunk size into the open_url

* Move functionality away from remote to cache

* Basic progress bars for both transfer types

* Proper job calculation

* Redesign .open() usage in order to work with different trees

* Align the signatures of other open() functions to accept **kwargs

* Implement chunked uploading to the ssh

* Use local cache to compute directory hash (md5)

* S3: multipart upload test

* Wrap local cache's hash_to_path with PathInfo

* Use .isdir() instead of a try/except statement for calculating the from_infos

* New CLI layout (add/import-url)

* Adjust CLI tests to accept new arguments

* tests: import_url/add func/unit tests

* Introduce cache.transfer()

* Invalid CLI combination tests

* Store dir_info key in the transfer_directory

* LocalTree.upload_fobj

* Tests for utils

* Lazy imports on some places

* --to-remote migration (and repo._transfer)

* Use proper temporary location, more efficient pbar calc

* Directory transfer logic rewrite

* Use shutil.copyfileobj()

* Rebase...

* Better tests

* Inline transfer operation to .add() / .transfer()

* Open in the 'rb' mode for the tests

* More tests, better invalid option handling at repo level

* .read() certain amount of bytes to validate the content

* Better invalid argument handling

* Better progress bars by using .getsize() API

* For fallback upload, use the from_info.name instead of temporary naem

* introduce --jobs for add/import-url
2021-01-19 12:53:32 +02:00
Peter Rowlands (변기호) 407f5607a2 scm: implement pygit2 resolve rev and native checkout (#5270)
* pygit2: implement get/set/remove refs

* pygit: implement iter_refs

* pygit: implement resolve_rev

* pygit2: implement working tree checkout

* pygit2: implement reset, explicitly read/write index when used

* pygit2: checkout does not need to reset index

* pygit2: handle "-" branch shorthand in checkout

* tests: install post-checkout hook should be run via gitpython

* exp apply: use stricter exception handling for merge conflict

* pygit: fix index read/write usage

* gitpython: handle untracked file conflicts in stash apply

* fix flaky/race index issue
2021-01-18 17:41:25 +02:00
Saugat Pachhai 78e12327bc use repo.stage.create_from_cli to create stages (#5281) 2021-01-18 18:55:19 +05:45
Ruslan Kuprieiev 4f2de7a3ef tests: remove psutil checks (#5283)
Leftover from https://github.com/iterative/dvc/pull/5232
2021-01-18 13:50:21 +02:00
Saugat Pachhai 628f87845c introduce stage:add command (#5263)
* Implement stage:add

* fix tests

* Add short flag -C for checkpoints
2021-01-18 10:05:36 +02:00
Ruslan Kuprieiev b027760e12 dvc: move protect from tree to cache (#5271) 2021-01-14 21:10:53 +02:00
Ruslan Kuprieiev a2cac8b423 tests: upgrade azurite and enable loose mode (#5272)
* tests: upgrade azurite and enable loose mode

Azure tests started failing recently. They still work with real azure, so this is on azurite side.

* tests: use cloud instead of workspace

also gdrive doesn't support it yet :(
2021-01-14 20:07:24 +02:00
Ruslan Kuprieiev 3e42e015d6 dvc: redefine is_callback as cmd and no outs/deps (#5187) 2021-01-14 17:23:20 +02:00
Saugat Pachhai 257f58450a refactor run; move to stage.utils (#5262)
* refactor run; move to stage.utils

* Update dvc/repo/run.py

* fix pylint

* skip on run-cache
2021-01-13 21:19:36 +02:00
Batuhan Taskaya c840cecc91 tree: implement getsize() (#5261)
* Implement Tree.getsize() API

* Remove azure from tests

* strip support for recursive size calculation

* _getsize() -> getsize()
2021-01-13 18:35:57 +02:00
Batuhan Taskaya e5f91f5c7f cache: don't initalize cloud cache until its needed (#5264) 2021-01-13 17:01:06 +02:00
Saugat Pachhai f8200ca2b8 move parsing params to utils (#5259)
* move parsing params to utils

* fix tests

* move chunk_dict and test it

* update test
2021-01-13 13:36:49 +02:00
Peter Rowlands (변기호) 1ab1abf62a git: implement merge/checkout via pygit2 (#5245)
* git: implement merge (gitpython, pygit2)

* pylint: add pygit2 as C extension

* git: s/checkout_paths/checkout_index/ and add pygit implementation

* git: support basic checkout/merge conflict strategies in checkout_index

* fix relpath issue in pygit merge

* git: add stubs for add --update

* experiments: drop remaining gitpython specific scm usage
2021-01-12 13:26:27 +02:00
Saugat Pachhai a2c91d2058 scm: implement gitignore (#5243)
* scm: implement gitignore; use `pygit2` backend

* Add is_ignored implementation on `pygit2` and `gitpython` backends.
* Also implement `._reset()` on `repo.scm` which is most of the changes.

* fix tests

* use _backend_func

* minor fixups
2021-01-11 12:31:26 +02:00