Commit Graph
482 Commits
Author SHA1 Message Date
Ruslan Kuprieiev b8a42939ad config: use repo.tree (#4190)
Fixes #4188
2020-07-12 06:45:04 +03:00
Saugat Pachhai fe1d7e9f1d params: fix skipping of params dvc.lock when it's a falsy value (#4185)
The falsy values were being skipped when merging params values
from dvc.yaml and dvc.lock, showing the values as always changed.

These values were never added to `info`, but were found in
`self.params` making them appear as changed.

Fixes #4184
2020-07-09 21:29:26 +03:00
Ruslan Kuprieiev 0899b277c0 tests: launch oss/azure containers from fixtures (#4178)
* tests: launch oss/azure containers from fixtures

Related to #4054

* ci: hdfs: remove unneeded fix

We are using pyarrow 0.17.0 already.
2020-07-08 19:54:17 +03:00
karajan1001andkarajan1001 253a0eae13 Add more tests according to gitignore (#4166)
* Add more tests according to .gitignore

* Test update

* Update test

* Solve question of path

* update one test

* Update 2 tests

* Add one tests

* comment those failed tests caused by other package

* parametrize some tests

Co-authored-by: karajan1001 <[email protected]>
2020-07-07 23:04:52 +03:00
Peter Rowlands (변기호) fa16b56cba s3,gs: don't append "/" to prefixed path when listing objects (#4149)
* s3,gs: don't append "/" to prefixed path when listing objects

* remote: use optional prefix kwarg for walk_files

* if prefix is True, path will be walked as a prefix
* if prefix is False, path will be treated as a directory (trailing
  slash will be appended for S3-like remotes)

* tests: add unit test for BaseRemoteTree.list_paths
2020-07-02 20:04:04 +03:00
Ruslan Kuprieiev 07da9f1e5c tests: remotes: use TmpDir-like fixtures (#4140) 2020-07-02 04:46:40 +03:00
Ruslan Kuprieiev 0275a0d8d8 azure: use CLI config (#4137)
Fixes #4129
2020-06-30 14:13:25 +03:00
Saugat Pachhai 1c0f5cdf4b pylint: enable additional checks (#4122)
Created a separate pylint plugin to disable some checks for tests.
2020-06-29 19:15:05 +03:00
Ruslan Kuprieiev d809723bc9 dvc: add trailing newline in --show-md (#4124)
To finalize md table.

Fixes #4123
2020-06-27 00:02:18 +03:00
Saugat Pachhai 047352027f pylint: enable attribute-outside-init check (#4119)
* pylint: enable attribute-outside-init check

* fix tests

* Fix mock for time

This was an interesting one. I was mocking `time` on function definition
and then, using those later on test run. When all the tests were run, there
would be some delay that'd make tests fail. Hmmm ...
2020-06-26 17:22:38 +03:00
Saugat Pachhai ad306d7bf3 Enable most of the pylint checks (#4111) 2020-06-25 18:10:14 +03:00
Ruslan Kuprieiev efcf4e3312 git-hook: don't run when not in dvc repo (#4091)
Related to #4073
2020-06-23 16:32:28 +03:00
Ruslan Kuprieiev 4181c0ec4a run: hide and forbid --file for multistage files (#4086)
Fixes #4084
2020-06-23 03:46:59 +03:00
karajan1001andRuslan Kuprieiev 74930c01ec add --no-exec mode to import url (#4075)
* add --no-exec mode to import url

fix #3513

* Update tests/func/test_import_url.py

* Update tests/func/test_import_url.py

Co-authored-by: Ruslan Kuprieiev <[email protected]>
2020-06-20 13:29:09 +03:00
Ruslan Kuprieiev 51a8c782ae tests: create remote fixtures (#4063)
* tests: use remote fixtures

* tests: use remote fixtures for data cloud tests

* tests: treat remotes as tmp dirs
2020-06-18 01:36:13 +03:00
Peter Rowlands (변기호) f516dd252a trees: handle tree.walk errors the same way as os.walk (#4059)
* trees: BaseTree.walk should handle errors like os.walk

* use onerror callback if exceptions should be logged or raised

* repo.ls: use onerror for tree.walk
2020-06-17 13:25:14 +03:00
Peter Rowlands (변기호) 0fb9870de6 remote: rename "checksum" -> "hash" (#4051)
* remote: s/get_checksum/get_hash/

* remote/tree: s/get_file_checksum/get_file_hash/

* remote: s/get_dir_checksum/get_dir_hash/

* remote: s/checksum_to_path/hash_to_path/

* remote: s/path_to_checksum/path_to_hash/

* remote: cleanup remaining checksum references

* remote.index: s/checksum/hash/

* note: does not rename "checksum" field in the index DB schema
2020-06-16 12:16:51 +03:00
Peter Rowlands (변기호) a0c229cf9b remote: continue remote/cache/tree refactoring (#4041)
* remote: move constants into trees

* remote: replace Remote() Cache() helper functions

* output: update for remote changes

* cache/data_cloud: update for remote changes

* dependency: update for remote changes

* stage: update for remote changes

* remote: move remaining non-index methods into tree

* tests: update remote unit tests

* remote: LocalCache needs to lock remote index, not cache index

* fix bugs from moved PARAM_CHECKSUM/PARAM_RELPATH

* tests: repo tree open needs state context

* remote: make Remote.gc a class method

* operates on obj.tree, so that GC can be done with both remote and
  cache instances

* bug fixes

* tests: update test_data_cloud

* bug fixes

* tests: update func tests
2020-06-15 16:22:55 +03:00
karajan1001 a59f90fac9 Performance improvement of dvcignore (#3967)
fix#3869
1.Use big regex.

* Solve windows

* add rule order test

* Solve ignore order

* remove list comprehensions
2020-06-15 11:37:01 +02:00
Ruslan Kuprieiev a1d3440f85 metrics: diff: introduce --precision (#4026)
Rounding to 5 digits by default.

Fixes #3904
2020-06-13 00:54:42 +03:00
Saugat Pachhai b94a18cfb9 tests: tests for dvcfile (#4032) 2020-06-12 15:54:05 +03:00
Peter Rowlands (변기호) 9ead641c95 remote: separate cloud remote and cloud cache classes (#4019)
* remote: move get_file_checksum() into tree

* makes RemoteTree and RepoTree consistent with regard to checksum
  calculation

* remote: save() now takes explicit tree parameter

* when tree is remote.tree, save will be a move + link operation
  (same as default existing behavior)
* when saving path from a different tree, save will be a copy operation

* tests: update for moved remote/tree functions

* remote: move get_checksum into tree

* remote: separate cloud remote and cache classes

* tests: update unit tests for remote/cache separation

* remote: cloud cache should extend cloud remote

* remote: move LocalRemote.get

* tests: update func tests

* dependency: update for moved get_checksum

* remote: fix state lookup bug
2020-06-12 15:52:47 +03:00
Ruslan Kuprieiev 87276faef2 RepoTree: work with dirty repos (#4005)
Currently `RepoTree.open` will throw FileNotFoundError if you have a
file that is tracked by dvc, but which has no md5 or a cache for which
is missing, even though you have the file itself in your workspace.

This corresponds very nicely to the `--no-commit` or `--no-exec`
scenario, where you might not want to commit your artifacts to cache
just yet.

Fixes #3974
2020-06-11 09:50:27 +03:00
Saugat Pachhai 4042d5232d run: use -f/--force to overwrite, fix msg (#4011)
Also, makes fixes for `--overwrite` rename to `--force`
and also remove `remove_with_prompt` which was only being
used with `force\=True` anyway.

Fix #4003
2020-06-10 20:17:27 +03:00
Ruslan Kuprieiev afe539aaba plots: rename --no-csv-header to --no-header (#4001)
* plots: rename --no-csv-header to --no-header

Fixes #3996

* fix typo
2020-06-10 03:34:25 +03:00
Ruslan Kuprieiev db69def834 status: introduce --show-json (#3998)
Fixes #1406
2020-06-10 01:51:30 +03:00
Alexander Schepanovski 7230d87137 Refactor plots (#3994)
- separate data collection and rendering
- provide a way to use custom template loader
- drop hard-coding datafiles in template feature
2020-06-09 22:47:17 +03:00
Saugat Pachhai afc183f4e7 tests serializing of stage to lockfile (#3988)
* tests: serialize stage for lockfile

* config: make isort/black compatible

* convert class based tests to pytest
2020-06-09 15:48:17 +03:00
Saugat Pachhai d201fad1e3 tests: serialize pipeline file (#3985)
serialize: make params ordered
2020-06-09 14:22:55 +03:00
Saugat Pachhai 4e12e76e19 tests: unit testing for StageLoader for Pipelinefile (#3976) 2020-06-08 18:55:16 +03:00
Saugat Pachhai ae7b604531 Fix loading of params from stage cache (#3972) 2020-06-08 12:43:13 +03:00
Saugat Pachhai 99b58d3d05 refactor/test multistage load for params and outputs (#3949)
* refactor multistage load for params and outputs

* tests: load params

* tests: output loading from pipeline file

* fix test

* fix typo in name

* split params load

* rename params func s/inject_values/fill_values

* fix tests

* simplify loads_params and output.load_from_pipeline

* address @pared's suggestions for tests
2020-06-04 23:35:07 +03:00
Peter Rowlands (변기호) 74bd8137ba remote: finish separating RemoteTree methods (#3946)
* remote: move upload()/download() into tree

* remote: move path_info/path_cls into tree

* remote.azure: finish moving methods into tree

* remote.gs: finish moving methods into tree

* remote.hdfs: finish moving methods to tree

* remote.http: finish moving methods into tree

* remote.oss: finish moving methods into tree

* remote.s3: finish moving methods into tree

* remote.ssh: finish moving methods into tree

* remote.gdrive: finish moving methods into tree

* tests: update remote unit tests

* tests: update func tests

* remote: use walk_files() for all remotes

* list_cache_paths() now uses tree.walk_files() for all remotes except
  local/ssh

* fix DS warnings

* bugfixes
2020-06-04 23:22:31 +03:00
Alexander Schepanovski 9a55b909f8 Rename --xlab to --x-label, X_TITLE to X_LABEL, same for y (#3948)
Renamed:
- cli options
- dvcfile plot props
- template anchors
- variable names throughout the code
2020-06-03 20:30:17 +03:00
Ruslan Kuprieiev ac4f351daf dvc: require --external for external outputs (#3929)
Fixes #1545
2020-06-03 06:13:09 +03:00
Peter Rowlands (변기호) 2c0116ccf9 remote: separate tree functions from main remote classes (#3931)
* BaseRemote: start moving tree functions into BaseRemoteTree

* remote: add LocalRemoteTree

* remote: add cloud remote trees

* remote: move remove(), makedirs() into tree

* remote: move move(), copy(), symlink(), hardlink(), reflink() into tree

* fix attributes for moved remote methods

* tests: update unit tests for moved remote tree methods

* tests: mv unit/remote/test_remote_dir.py unit/remote/test_remote_tree.py

* fix attributes for moved remote tree functions

* tests: update func tests for moved remote tree methods

* test fixes

* fix DS warnings
2020-06-03 06:04:25 +03:00
Ruslan Kuprieiev d1e08b6157 dvc: replace pipeline with dag (#3905)
`pipeline list` is no more, it had some very questionable applications
(none to be precise) and was duplicating old `pipeline show` functionality.
We might introduce a different command to assist in listing (e.g. for
shell completion) in the future.

New `dvc dag` replaces `dvc pipeline show` and by-default will show
all pipelines in the project in ASCII (so there is no more --ascii)
and also `--dot` support, just like before. When given a target,
`dvc dag` (in any mode) will show DAG that leads to the target,
skipping the descendants, unless `--full` is specified.
2020-06-01 02:35:36 +03:00
Saugat Pachhai edfa1741db implement removing stage (#3881)
This should allow us to be able to remove a stage from a dvcfile,
(if it's a single stage file, it removes it), and make us able to
delete the overwrite the stage on run as well.

This commit:
* changes `run` `--overwrite-dvcfile` flag to `--overwrite`
* removes prompt in `run` for overwrite and fails hard
* changes `remove`: now it by default removes stage entry and unprotect outs
* `remove` has `--outs` to remove outputs instead of unprotecting them
2020-05-31 17:41:19 +03:00
Ruslan Kuprieiev 9ee62ef8f0 dvc: rename "working tree" to "workspace" (#3914)
Fixes #3892
2020-05-31 17:39:04 +03:00
Ruslan Kuprieiev 0bb49d2549 dvc: rename dvc lock -> dvc freeze (#3915)
Fixes #3901
2020-05-31 03:38:21 +03:00
Alexander SchepanovskiandRuslan Kuprieiev 516d82e411 Add plots props and plots modify params (#3911)
* Add plots props and `plots modify` params

* Update dvc/command/plots.py

Co-authored-by: Ruslan Kuprieiev <[email protected]>

* Update dvc/repo/plots/show.py

Co-authored-by: Ruslan Kuprieiev <[email protected]>

* Update dvc/repo/plots/show.py

Co-authored-by: Ruslan Kuprieiev <[email protected]>

* Update dvc/repo/plots/show.py

Co-authored-by: Ruslan Kuprieiev <[email protected]>

* Update dvc/repo/plots/show.py

Co-authored-by: Ruslan Kuprieiev <[email protected]>

Co-authored-by: Ruslan Kuprieiev <[email protected]>
2020-05-30 14:37:11 +03:00
Ruslan Kuprieiev 2d8c6043ca plots: replace --show-json with --show-vega (#3891)
Fixes #3890
2020-05-28 14:42:41 +03:00
Saugat PachhaiandRuslan Kuprieiev 2fecc66cb9 addressing: allow stage name addressing without ":" (#3842)
* addressing: allow stage name addressing without colon

* repo: reorganize imports

* refactor/reorganize collect_granular

* add tests for stage addressing

* fix ds and cc issues

* fix unpack error in test

* tests: stage string representations

* exception: add error message

Also remove `cause` when throwing NoOutputOrStage, as
CheckoutErrorSuggestGit will start chaining all the messages
in cause of the exception.

* rename NoOutputOrStage NoOutputOrStageError

Co-authored-by: Ruslan Kuprieiev <[email protected]>
2020-05-26 03:51:51 +03:00
Ruslan Kuprieiev b47998463f run-cache: don't forget to set wdir (#3873)
Fixes #3848
2020-05-25 20:41:36 +03:00
Saugat Pachhai 9198fa7459 log: reduce log, make it readable/easier (#3834)
* log: streamline/make it readable

* Remove 'run' from log message

* fix args passing in imports

* tests: fix test

* run: Add quotes around stage name

* run: add quotes for run-cache restore log

* address @dmitry's comments
2020-05-25 05:33:16 +03:00
Ruslan Kuprieiev d77af8196e optimize local status (#3867)
* remote: remove unpacked dir

We've done a lot of optimizations lately, which made unpacked dir trick
obsoleted.

* local: save us a stat call in is_protected

* local: speedup checksum_to_path ~x5.5

* tree: walk: don't use os.path.join

It is ~5.5 times slower than joining by hand.

* dvcignore: optimize matching x10

On a repo with a dvcignore with 1 pattern and a directory with 400K
files, `dvc status` now takes ~8 sec instead of ~30 sec.

To achieve that, we make some assumptions about the paths formats that
we are dealing with, so we could use simpler logic instead of using
very slow `relpath`, `abspath` etc on every entry in a directory.

It is also clear that CleanTree behavior is inconsistent (even tests
expect very different outputs from it), so we will need to look into
this later.
2020-05-25 03:20:11 +03:00
Ruslan Kuprieiev b7ad2dc841 test: fix hdfs/azurite/oss tests (#3864)
* travis: fix typo

* tests: azure: fix expected etag format

* test: ssh: increase the number of tries

* travis: don't install docker

* dvc: update pyarrow

* tests: ssh: don't leak connections

* remote: don't fail when cache/remote doesn't have prefix subdir
2020-05-23 23:46:40 +03:00
Ruslan Kuprieiev 5ab948f8b6 tests: unit: azure: add etag test (#3862) 2020-05-23 19:38:38 +03:00
Steffan Sluis f9fbe97509 azure: support external file dependencies (#3852)
* azure: support external dependencies and outputs

- Implement get_file_checksum with get_etag
- Implement a DependencyAzure and OutputAzure classes
- Add AzureOutput to OUTS, OUTS_MAP and CHECKSUMS_SCHEMA
- Add AzureDependency to DEPS and DEPS_MAP
- Add unit tests for AzureOutput and AzureDependency

Fixes #3540.

* Use content_md5 instead of etag

The etag is different for the same file in different locations.

* Use etag and remove external outputs for Azure

Due to inconsistencies with Azure's Content-MD5 property, it is not
stable enough to be used at the moment. Using the etag offers enough
reliability to support external dependencies. See also:
https://discordapp.com/channels/485586884165107732/565699007037571084/713462619469643796
2020-05-23 18:53:52 +03:00
Ruslan Kuprieiev 58c9ff0de2 azure: drop obsoleted url format (#3856) 2020-05-22 20:36:04 +03:00