* objects.status: use object IDs instead of naive objects
* objects.transfer: use object IDs instead of naive objects
* objects: add ReferenceHashFile
* odb: add ReferenceObjectDB
* repo: collect used object IDs instead of naive objs
* support basic/naive fs serialization
* objects.stage: stage file objects in addition to trees
* objects: remove save(), update transfer()
* output/dep: update for osave removal
* path_info: support both url and path attributes
* status/gc: use object IDs instead of naive objs
* diff: update staging usage
* commit: update staging usage
* tests: clean staging when needed
* tests: update for save/transfer/stage changes
* dvcfs: don't allow config serialization (repofs should be used instead)
* utils: return mtime as str, size as int
* tests: update unit tests for save/stage/transfer changes
* objects: use Repo.open when needed in ReferenceHashFile
* fix ls test staging
* objects.stage: don't skip hash check when loading from state
- individual hashes will still be loaded from state if they are still
valid
* ReferenceHashFile: serialize repo fs paths relative to repo root
* preserve state when staging
* objects.tree: skip hash computation in digest() when we have already
loaded hash from state
* always check file existence in referencehashfile
* update repofs test since stage no longer allows nonexistent files
* odb: only protect on check() if hash was verified
* staging: use unique memfs namespace for staging per dest ODB
* tests: clean full staging namespace
* refodb: preserve repofs cache dir
* repodependency: stage imports to local ODB and strict check circular
imports
* fetch: fetch staging last
* staging: make dest odb mandatory and preserve state
* refodb: cache nonlocal fs's
* fix rebase errors
* repofs: support full instantiation from fs config
* repofs: preserve subrepo factory for erepos
* tests: clarify repofs dirty file behavior
* Fix merging of params when empty
Recent release of python-benedict==0.24.1 started ignoring empty dictionaries
during merge. The way we expected to work was questionable and also how
benedict itself tries to handle the references to empty dictionary is
also questionable.
I consider this to be a proper way to handle this even if this gets fixed
on the benedict side.
* Revert "setup: limit python-benedict version (#6377)"
This reverts commit 15de826266.
* add comment for why passing through benedict
* params/metrics/plots/exp show: introduce onerror
* fixup
* plots/metrics/params: removing errors
* removing more errors
* removing errors
* some more removing
* new plots ux
* new ux for metrics
* new ux for params
* fixing tests
* fixups
* minor test fixes
* minor test fixes
* commands: plots/params: fix ui imports
* working on error handlng decorator, stopped at show checkpoints
* error_handler, further dvelopment
* plots just before moving loading to collect
* appending errors to results: initial passing
* fixup
* onerror: remove onerror fixture
* fixups
* plots/metrics/params/experiments: temporarily remove error warnings
* plots: extract parsing out of class method
* metrics/experiments: provide exception serializer for show-json
* params/plots/metrics: signal errors
* rebase fixups
* fix TODOs
* fixup
* skshetry's review refactor
* separate validation and transformation of args from add func
* make tests pass for Python3.6
* cleanup
* use dict for attr-access and patch boundarguments.arguments
* add: prevent crash while getting relpath
Since python 3.8 os.path.realpath has resolved windows network shares
to UNC paths. This breaks the logic for relpath as the UNC and mapped
drive paths don't have an obvious common prefix. As it is not easy to go
back to the mapped drive path from UNC path, this is resolved by always
using the UNC paths for calculating relative paths in windows.
Fixes#5832
* relpath: Update changes following review
Two changes:
- use pytest.mark.skipif rather than if statement inside test to make
it clearer that test is windows specific
- Use tail rather than upper_path to denote rest of path after drive
name taken off (to match python documentation)
Pull request: #5837
* tests, linter: update to add test case and apply linter though pre-commit
Co-authored-by: Tom Rutter <[email protected]>
* Decoupling dvcignore and fs
[x] remove dvcignore from fs objects
[x] attach dvcignore to repo
[x] add ignore check to functions(add, checkout, output, pipeline, etc)
[x] pass all tests
[x] final check
* Solve all of the arugments error.
* add dvcignore to dvc list
* Solve some test_ignore cases
* add dvcignore to checkout.
1. add dvcignore to 'checkout', 'add'
2. add ignore_filter to fs
* Solve two tests
* Get rid of ignore_filter
* Add ignore examine to download
* Solve a test issue
* Solve dvcignore and subrepo problems
* Solve sub repo error
* Revert some changes
* pass all tests
* Remove debug codes
* Some final exams
* dvcignore trie tree only update when needed
* reuse of the dir result in path walk.
* Some change after code review.
* Recover something from false `--force` push
* add abspath trans to dvcginore
* pass pylint
* pylint related
* Update dvc/fs/repo.py
Co-authored-by: Ruslan Kuprieiev <[email protected]>
* Changes related to reviews.
* dvcignore call api change
from dvcignore.walk_files(fs.walk(path_info)) to dvcignore.walk_files(fs, path_info)
* Get rid of PathInfo in test_ignore.py
* fs.walk follow the arguments of os.walk
* Dvcignore as parameters
* pass dvcignore as arguments to checkouts
* Decoupling state and repo
* Update dvc/dvcfile.py
Co-authored-by: Paweł Redzyński <[email protected]>
* Update dvc/objects/stage.py
Co-authored-by: Paweł Redzyński <[email protected]>
* Solve some small problems
* Add tests to verify that dependency now not ignore
fix#5256
* Update dvc/ignore.py
* Update dvc/fs/git.py
* Update dvc/repo/__init__.py
* Some small improvements
* pass black
* Refactor is_ignored
* Update dvc/output/base.py
* repofs: use dvcignore in exists/isdir/isfile
Per https://github.com/iterative/dvc/pull/5812/files#r630604524
Co-authored-by: myname <[email protected]>
Co-authored-by: Ruslan Kuprieiev <[email protected]>
Co-authored-by: Paweł Redzyński <[email protected]>
Co-authored-by: Ruslan Kuprieiev <[email protected]>
* dvc: fix breakage with rich==10.0.0
Change in the arguments of __rich_measure__.
Fixes#5722
* dvc: Fix linting breakage from rich==10.0.0
Fixes: #5733
* dvc: set lower bound for rich dependency to 10.0.0
Fixes#5722
* tree: Implement upload_fobj protocol to azure
* tree: Implement upload_fobj protocol to google storage
* tree: Implement upload_fobj protocol to google drive
* tree: Implement upload_fobj protocol to hdfs
* tree: Implement upload_fobj protocol to oss (alibaba cloud)
* tree: Implement upload_fobj protocol to webhdfs (also some cleanup)
* tree: Implement upload_fobj protocol to http/https
* Add _generate_download_url() to the HTTP (for tests)
* tree: Implement a temporary upload_fobj protocol to webdav/webdavs
* Unify progress bars
* Lazily evaluate the file size, for http uploads
* Remove copy_fobj protocol and _transfer_file_as_whole
* show progress bar on cache transfer
* Simplify s3 upload
* Remove CHUNK_SIZE (except for some special cases)
* remove concurrency restrictions
* Update dvc/tree/oss.py
Co-authored-by: Ruslan Kuprieiev <[email protected]>
Co-authored-by: Ruslan Kuprieiev <[email protected]>
* Implement export-to-remote functionality
* Redistrubition of functionality from tree to remote
* Pass chunk size into the open_url
* Move functionality away from remote to cache
* Basic progress bars for both transfer types
* Proper job calculation
* Redesign .open() usage in order to work with different trees
* Align the signatures of other open() functions to accept **kwargs
* Implement chunked uploading to the ssh
* Use local cache to compute directory hash (md5)
* S3: multipart upload test
* Wrap local cache's hash_to_path with PathInfo
* Use .isdir() instead of a try/except statement for calculating the from_infos
* New CLI layout (add/import-url)
* Adjust CLI tests to accept new arguments
* tests: import_url/add func/unit tests
* Introduce cache.transfer()
* Invalid CLI combination tests
* Store dir_info key in the transfer_directory
* LocalTree.upload_fobj
* Tests for utils
* Lazy imports on some places
* --to-remote migration (and repo._transfer)
* Use proper temporary location, more efficient pbar calc
* Directory transfer logic rewrite
* Use shutil.copyfileobj()
* Rebase...
* Better tests
* Inline transfer operation to .add() / .transfer()
* Open in the 'rb' mode for the tests
* More tests, better invalid option handling at repo level
* .read() certain amount of bytes to validate the content
* Better invalid argument handling
* Better progress bars by using .getsize() API
* For fallback upload, use the from_info.name instead of temporary naem
* introduce --jobs for add/import-url
* plots: allow dir plots
* first scenario
* separate dvclive tests
* rename index to step
* another test
* refactor
* its ok to have step in data
* sort plots
* introduce --logs
* add logs to run commands
* variable name refactoring
* fix logs option
* fixup
* cmd: run: fix unit tests
* plots: modify: fix tests
* improve dir handling
* fixup
* dvclive: logs summary
* api: introduce logs summarization method
* handle no repo case
* fix granular dir plots
* api: dvclive: simplify
* dvclive: roll back logs flag
* cmd: introduce logs
* api: adjust to logs
* test: dvclive fix
* rename logs to dvclive
* live: command: add uninitialized
* outs: dvclive type
* dvclive: support providing config via evn variables
* dvclive: treat as metrics
* dvclive integration: add support for summary on/off
* dvc integration: add temporary test for configuration export
* remove requirements
* cmd: introduce logs
* rename logs to dvclive
* cmd: introduce logs
* remove logs leftowvers
* dvclive: env: adjust to chekpoints env variables
* command: live: remove unnecessary help
* fix linter suggestions
* type hinting
* review refactor
* replace dvclive with live
* stage: loading: move live loading to separate method
* stage: serialize: allow only single live output
* live: add show/diff
* stage: serialize: roll back single live enforcing
* fixup
* rebase fixups
* output: live: force single instance
* live: command: add unit tests
* Update dvc/output/base.py
Co-authored-by: Ruslan Kuprieiev <[email protected]>
* Update dvc/stage/__init__.py
Co-authored-by: Ruslan Kuprieiev <[email protected]>
* Update dvc/stage/serialize.py
Co-authored-by: Ruslan Kuprieiev <[email protected]>
* review v2
* live: fix summary tracking by experiments
* naming fixups
* api: live: add tests
* tests: api: separate live tests
Co-authored-by: Ruslan Kuprieiev <[email protected]>
* #4578 added is_user_executable to dvc file
* Addressed PR feedback and introduced test_add_executable
Also fixed all tests in test_add.py
* Added a test to checkout executable file
* Pop isexec in dvc/output/__init__.py:loadd_from
* Implement test that file is executable after checkout
* Address PR feedback
* Address PR feedback
* Changed BaseTree.isexec to use path_info as an argument
* Update tests/func/test_add.py
* Update tests/func/test_add.py
* Update tests/func/test_add.py
* Update tests/func/test_add.py
* fix formatting
* add: preserve exec
* checkout: fix setting exec
* tests: refactor checkout exec test
* tests: fix windows cases
* tests: add: fix exec test on windows
* Update dvc/tree/local.py
* Update dvc/output/base.py
* Update dvc/output/base.py
* Update dvc/cache/base.py
* Update tests/func/test_add.py
* tests: add: skip whole exec test on windows
* save isexec to lockfiles
* fix formatting
Co-authored-by: Ruslan Kuprieiev <[email protected]>
Co-authored-by: Ruslan Kuprieiev <[email protected]>
Saugat Pachhai
Peter Rowlands (변기호)
Batuhan Taskaya
Christian Clauss
Paweł Redzyński
Laurens Duijvesteijn
tomrutterandTom Rutter
Alex Lopez
Sami Jawhar
Dmitry Kropachev
Ioana GrigoropolandRuslan Kuprieiev