* remote: move upload()/download() into tree
* remote: move path_info/path_cls into tree
* remote.azure: finish moving methods into tree
* remote.gs: finish moving methods into tree
* remote.hdfs: finish moving methods to tree
* remote.http: finish moving methods into tree
* remote.oss: finish moving methods into tree
* remote.s3: finish moving methods into tree
* remote.ssh: finish moving methods into tree
* remote.gdrive: finish moving methods into tree
* tests: update remote unit tests
* tests: update func tests
* remote: use walk_files() for all remotes
* list_cache_paths() now uses tree.walk_files() for all remotes except
local/ssh
* fix DS warnings
* bugfixes
* BaseRemote: start moving tree functions into BaseRemoteTree
* remote: add LocalRemoteTree
* remote: add cloud remote trees
* remote: move remove(), makedirs() into tree
* remote: move move(), copy(), symlink(), hardlink(), reflink() into tree
* fix attributes for moved remote methods
* tests: update unit tests for moved remote tree methods
* tests: mv unit/remote/test_remote_dir.py unit/remote/test_remote_tree.py
* fix attributes for moved remote tree functions
* tests: update func tests for moved remote tree methods
* test fixes
* fix DS warnings
We will be re-introducing `metrics modify` in the future and
will likely revisit `add/remove` too, so it is better to get
rid of these for now and introduce later with a clear scneario
in mind.
Fixes#3849Fixes#3907
`pipeline list` is no more, it had some very questionable applications
(none to be precise) and was duplicating old `pipeline show` functionality.
We might introduce a different command to assist in listing (e.g. for
shell completion) in the future.
New `dvc dag` replaces `dvc pipeline show` and by-default will show
all pipelines in the project in ASCII (so there is no more --ascii)
and also `--dot` support, just like before. When given a target,
`dvc dag` (in any mode) will show DAG that leads to the target,
skipping the descendants, unless `--full` is specified.
This should allow us to be able to remove a stage from a dvcfile,
(if it's a single stage file, it removes it), and make us able to
delete the overwrite the stage on run as well.
This commit:
* changes `run` `--overwrite-dvcfile` flag to `--overwrite`
* removes prompt in `run` for overwrite and fails hard
* changes `remove`: now it by default removes stage entry and unprotect outs
* `remove` has `--outs` to remove outputs instead of unprotecting them
* ignore: dvcignore root is distinct from tree_root
* for subrepos, dvcignore root should be the subrepo's .dvcignore, not
host repo's .dvcignore
* tests: add test for subrepo dvcignore behavior
* tests: add test for metrics show -T with pre-existing tags
* brancher: ignore git revisions that do not contain repo
* tests: update test to include cmd
* CleanTree: tree_root for subrepos should be the repo root, not scm root
* only force subrepo root for git trees
* fix windows shell quotes
* tests: test that CleanTree works outside of walk()
* ignore: CleanTree should always check ignores, not just for walk()
* CleanTree: handle broken symlinks
* handle case for linking from shared local cache dirs
* Fix windows relpath/different drive issue
* addressing: allow stage name addressing without colon
* repo: reorganize imports
* refactor/reorganize collect_granular
* add tests for stage addressing
* fix ds and cc issues
* fix unpack error in test
* tests: stage string representations
* exception: add error message
Also remove `cause` when throwing NoOutputOrStage, as
CheckoutErrorSuggestGit will start chaining all the messages
in cause of the exception.
* rename NoOutputOrStage NoOutputOrStageError
Co-authored-by: Ruslan Kuprieiev <[email protected]>
* remote: remove unpacked dir
We've done a lot of optimizations lately, which made unpacked dir trick
obsoleted.
* local: save us a stat call in is_protected
* local: speedup checksum_to_path ~x5.5
* tree: walk: don't use os.path.join
It is ~5.5 times slower than joining by hand.
* dvcignore: optimize matching x10
On a repo with a dvcignore with 1 pattern and a directory with 400K
files, `dvc status` now takes ~8 sec instead of ~30 sec.
To achieve that, we make some assumptions about the paths formats that
we are dealing with, so we could use simpler logic instead of using
very slow `relpath`, `abspath` etc on every entry in a directory.
It is also clear that CleanTree behavior is inconsistent (even tests
expect very different outputs from it), so we will need to look into
this later.
* erepo: load external repos directly from git tree
* erepo: add fetch_external
* remote/RepoTree: add callback for keeping track of download counts when
saving tree to cache
* repo: use erepo.fetch_external() in repo.fetch()
* erepo: return cache save_infos in fetch_external
* DependencyRepo: use erepo.fetch_external and cache.checkout instead of
pull_to
* erepo: remove pull_to
* DvcTree: support granularity for isdir()
* DvcTree: fix indentation bug
* RepoTree: add copytree() method
* LocalRemote: use working tree for local cache walk_files
* repo: state should be noop for GitTree based erepos
* erepo: add get_external()
* test_get: remove unneeded caplog check
* erepo: add get_rev()
* tests: fix erepo test bug
* ls: use RepoTree
* remote: support trees in _collect_dir
* remote: support trees in get_dir_checksum
* RepoTree: fix dir_cache relpaths in windows
* remote: fix duplicated fetch bug
* utils: don't skip md5 dos2unix check for git blobs
* otherwise md5 checksums will not match when comparing git version to
cached filesystem version on windows
Fixes: #3678
When file has been already tracked under git, OutputAlreadyTrackedError gets raised.
This commits add git command suggestions to help user to stop tracking file from git,
so in future commits they can use DVC for the file.
Co-authored-by: Puneetha Pai <[email protected]>
* DvcTree: use out.dir_cache instead of out.collect_use_dir_cache
* RepoTree: support filtering out dvcfiles during walk()
* RepoTree: support recursive isdvc()
* remote: support computing checksums for tree objects
* RepoTree: pull dir contents on walk() if in `fetch` mode
* tests: add func test for DVC dir pull on RepoTree.walk()
* DvcTree: support granular open()
* RepoTree: add get_file_checksum()
* remote: revert checksum changes
* remote: add tree support for cache.save()
* tests: test saving directly to cache from RepoTree
* remote: local cache needs its own WorkingTree instance when repo.tree is
GitTree
* RepoTree: state context should be entered by open()/walk() caller
* RepoTree: only pull dir contents when cache has changed
* tree: update tree tests
* fix ds warnings, update comments
* fix windows tests
* Renamed --outs-only to --dvc-only
* Changed outs_only to dvc_only
* replace output_only with dvc_only
* Restyled by black
Co-authored-by: Restyled.io <[email protected]>
* run: add --plot/--plot-no-cache
Part of #3409
* plot: move show/diff to API
* plots: show marked plots by default
Involves some refactoring to make plots comply with the rest of the code
base.
* dvc.yaml: use top-level metrics and plots
* dvc.yaml: add support for plot template
* plots: add support for templates in dvc.yaml
* dvc.yaml: allow metrics/plots to have persist/cache
* plots: render single page by-default and introduce --show-json
* plot: use "working tree" instead of "workspace"
Just to sync this with the rest of the codebase. We should consider
renaming it to "workspace" everywhere, but for now I opt to not touch
it to not break something that depends on it.
* plots: rename -f|--file to -o|--out
Better corresponds to other commands like `import`.
* plots: use RepoTree and brancher instead of api
* stage: get rid of OutputParams
* tests: plots: add simple diff test
* plots: use `--targets` instead of `--datafile`
Makes it comply with `dvc metrics/params` CLI options.
* tests: unit: plots: add --show-json test
* stage: cleanup exception for format error
Based on feedback from the users.
* lockfile: use relpath in corruption error
* dvc: rename plot to plots
Follows `dvc params/metrics` convention and is needed in preparation for new
commands and some refactoring.
Part of #3409
* completion: rename plot -> plots
Saugat Pachhai
Ruslan Kuprieiev
Alexander Schepanovski
Paweł Redzyński
Puneetha PaiandPuneetha Pai
Shankho Boron GhoshandRestyled.io
karajan1001andPeter Rowlands