If we want `add`, `commit` and `move` to work for cloud versioning, option must be always True so it is the same as not having it.
Closes#8828
(We were not passing `merge_versioned=True` in `dvc commit`)
This adds support for custom metadata in outputs under `meta` key.
Also adds `--meta` flag to `add`/`import`/`import-url` that supports
`key=value` values.
When staging a directory, always save a "raw dir object" to the odb.
If the corresponding ".dir" object has not been added to the odb,
`stage()` calls can load the tree from the raw dir object instead of
rebuilding it by walking the directory.
This can lead to significant speed improvements when calling
`dvc status` for modified directories.
Fixes#7390
* objects.status: use object IDs instead of naive objects
* objects.transfer: use object IDs instead of naive objects
* objects: add ReferenceHashFile
* odb: add ReferenceObjectDB
* repo: collect used object IDs instead of naive objs
* support basic/naive fs serialization
* objects.stage: stage file objects in addition to trees
* objects: remove save(), update transfer()
* output/dep: update for osave removal
* path_info: support both url and path attributes
* status/gc: use object IDs instead of naive objs
* diff: update staging usage
* commit: update staging usage
* tests: clean staging when needed
* tests: update for save/transfer/stage changes
* dvcfs: don't allow config serialization (repofs should be used instead)
* utils: return mtime as str, size as int
* tests: update unit tests for save/stage/transfer changes
* objects: use Repo.open when needed in ReferenceHashFile
* fix ls test staging
* objects.stage: don't skip hash check when loading from state
- individual hashes will still be loaded from state if they are still
valid
* ReferenceHashFile: serialize repo fs paths relative to repo root
* preserve state when staging
* objects.tree: skip hash computation in digest() when we have already
loaded hash from state
* always check file existence in referencehashfile
* update repofs test since stage no longer allows nonexistent files
* odb: only protect on check() if hash was verified
* staging: use unique memfs namespace for staging per dest ODB
* tests: clean full staging namespace
* refodb: preserve repofs cache dir
* repodependency: stage imports to local ODB and strict check circular
imports
* fetch: fetch staging last
* staging: make dest odb mandatory and preserve state
* refodb: cache nonlocal fs's
* fix rebase errors
* repofs: support full instantiation from fs config
* repofs: preserve subrepo factory for erepos
* tests: clarify repofs dirty file behavior
* fs: use fsspecwrapper in memfs
* odb: add memfs staging ODB in ODBManager
* odb: add read_only attribute for odb instances
* objects: handle memfs paths when staging trees
* odb: remove git ODB
* output: use staging ODB
* RepoDependency: use staging odb for imports
* dvcfs: handle case where dir cache is unavailable
* fix circular import check
* odb: use temp local ODB for staging
* objects: use staging ODB in stage() and tree load
* objects: add typing for add/check/load/stage
* output/dep: use new staging
* add unit tests for local odb staging
* localfs: account for string paths in move()
* include local in odb.by_scheme
* tests: count dir cache like any other object in test_pull_git_imports
* odb: clear staging on gc()
* objects: add tree.get/filter/insert
* output: use obj.filter/get for granular dir commit
* squash filter logic output
* dependency: don't filter imports at the dep level
* don't init staging ODB for external cache
* use staging ODB when computing tree hash for external outs
* remove unneeded force in test granular commit
* use unique-per-manager memfs URLs for staging
* odb: make staging per-ODBManager
* objects: move state dependent staging into ODBManager
* objects: support checking multiple odbs
- staging dependent checks can be done via ODBManager.check
* checkout: do state lookup before explicit stage() in _changed()
* output: use odbmanager based staging
* RepoDependency: use odbmanager based staging
* update obj staging unit tests
* checkout: remove check(), handle individual file exceptions on link()
* diff: use odbmanager based staging
* objects: add ObjectPermissionError for read/write perm errors
* odb: move staging out of odbmanager
* objects: handle staging ODB in objects.stage()
* objects.tree: don't stage anything in tree methods
* odb: clear staged objects on gc()
* remote: don't filter objs by scheme, objs are already grouped by ODB
* diff: update objects.stage usage
* output/dep: update stage() usage
* update ODB tests
* update func tests
* remove memfs from FS_MAP
* revert unneeded objects.check() changes
* remove unused tree.insert()
* revert unused odbmanager changes
* add separate odb error classes
* stage external outs directly in ODB
* check for obj existence in main ODB before staging
* use .dvc/tmp/staging instead of per-odb staging
* gc: only gc loal staging once
Pre-requisite for removing fs.path_info and switching to regular strings
as paths in filesystems.
With new filesystems we no longer need the zoo of different dependency
and output types, as most of them are now just handled by the underlying
filesystem. Though deps/outs are still due for a refactor in other
aspects.
* state: add simple reentrance
* state: pass Repo instead of LocalCache
* state: use granularly
Users could still load state preemptively if they want to bulk up
the operations, but other than that tree/cache will just load it
when they need it.
* addressing: allow stage name addressing without colon
* repo: reorganize imports
* refactor/reorganize collect_granular
* add tests for stage addressing
* fix ds and cc issues
* fix unpack error in test
* tests: stage string representations
* exception: add error message
Also remove `cause` when throwing NoOutputOrStage, as
CheckoutErrorSuggestGit will start chaining all the messages
in cause of the exception.
* rename NoOutputOrStage NoOutputOrStageError
Co-authored-by: Ruslan Kuprieiev <[email protected]>
* dvc: use lockfile as yaml instead of json
* refactor Dvcfile into Pipeline file and Single stage file
* fix tests
* dvc: fix outputs
* add more tests for collection of outputs
* add tests for data cloud/get/import/ls
* tests: test for checkouts
* Allow other checksums other than md5
* tests: use iterdir instead of os.listdir
* cleanup errors reported by cc and ds
* utils: throw DvcException instead of plain Exception
* tests: use yaml.load instead of json.load
* run: split assignments
* Update dvc/stage/exceptions.py
Co-authored-by: Ruslan Kuprieiev <[email protected]>
* refactor stage into dvcfile
* Split create_stage out of dvcfile to Stage::create() and overwrite
* Remove logging from Repo::run
* tests: stop using --remove-outs
Co-authored-by: Ruslan Kuprieiev <[email protected]>
- `tmp_dir` descends from Path
- convenient template methods to generate files and dirs, add them to
dvc and git and commit to git
- independent of old basic_env structures
- can go in any order
- modular: start with empty `tmp_dir`, initialize git with `scm`, dvc
repo with `dvc` add "repo template" with `repo_template`, ...
* test: remove never used copy of load_stage_file()
* dvc: save comments and custom formatting in stage files
* Add a couple of TODOs
* test: test repro doesn't clear comments and formatting in .dvc
As part of this I started writing pytest-like tests and added commonly
used fixtures.
* test: simplify and prettify dvc formatting retained test
Also test that line comments after md5 fields are retained.
* test: fix tests
* dvc: fix stage and metrics opens not closed
* dvc: always use utf-8 in stage files
It used to encode in system default encoding. Not sure if PyYAML was
handling this silently or we were just lucky all the way.
* test: unit test apply_diff()
* test: remove TODOs and ASK
* dvc: polish dvc-formatting PR
* dvc: move stage load/dump utils to a new stage utils file
* dvc: clean up apply_diff()
* test: test stage md5 ignores comments
* test: remove pytests starting marker
Peter Rowlands
skshetry
David de la Iglesia Castro
Saugat Pachhai (सौगात)
Ruslan Kuprieiev
Daniele Trifirò
Samuel Knight
mbiesekandRuslan Kuprieiev
Paweł Redzyński
Casper da Costa-Luis
Mr. Outis
Alexander Schepanovski