Intermediate PR in removing path_info from our code base.
It is completely removed from the main codebase and is still
being used in tests, which will be migrated in the followups.
For fs-specific simple path manipulation, we've introduced
`fs.path` helper (similar to `os.path`).
Fixes#6774
* Add experiment name check.
1. Add experiment name check (https://git-scm.com/docs/git-check-ref-format)
2. Add duplicate exp name check.
3. Add some unit test for it.
* Ban slash / in dvc exp names
* Use dulwich backend for ref name checking
* Some bug fix
* Update dvc/repo/experiments/__init__.py
Co-authored-by: Peter Rowlands (변기호) <[email protected]>
* Update dvc/repo/experiments/__init__.py
Co-authored-by: Peter Rowlands (변기호) <[email protected]>
* Some review changes
* Make some funtion more reusable.
Co-authored-by: Peter Rowlands (변기호) <[email protected]>
* throw error if new parameters are added by dvc run exp -S
Throws an error if dvc run exp --set-param references a parameter key path
that is not in the target config file. This is done to prevent silent errors
in experimentation when new params are accidentally added instead of modifying
current ones due to typos.
This implementation is based on initial suggestions in issue #5477.
* fix mypy confusion from overwriting a var
* tests: remove modify param test that was adding params
One of the test in test_modify_params was still adding a parameter
* tests: remove param modification during exp run in test_untracked
Spurious usage of modifying a parameter when the params.yaml is not yet existing in test_untracked.
* remove benedict dependency for verifying params
Instead, the keypath util module from benedict is adapted into the dvc codebased and used
natively to verify that a keypath exists within a dict.
* exp: list all invalid param modifications in error message
* exp-run: more specific exception for new params via --set-param
Uses established MissingPramsError instead of DvcException. Modified message to be more similar to other uses of this exception.
* Revert "remove benedict dependency for verifying params"
This reverts commit 6170f16dcc4033667fbacb0d0bc13c60898f58c4.
* exp: use internal benedict import for validating params
* exp: combine new param validation into merge_params
Moves new param validation into existing merge_params function as an optional check
* exp: minor ammendments to error message
* Revert "tests: remove param modification during exp run in test_untracked"
This reverts commit c9eb1a62af58586509ded362cc79e75ddc4b119c.
* exp: fix test_untracked to not fail due to new params
Fixed by creating the params file with the new parameter already present.
* Remove a special queued experiments
fix#6157
1. dvc exp remove not accept queued experiments name
2. add some tests for this feature
* Extract tests and add revision support
1. Extract remove experiments to a new file.
2. revision can be used to remove special queued experiment
* Accept shortened revisions
* Split removing committed and queued exp functions
* Api name change
* Return to the old API name
* shorten some functions
* Error message change
* Better test cases, more corner case
* Still raise exception in a mixed case
* stage,commit: add support for only committing data stages from
experiments
* exp run: `dvc commit` data deps when stashing exp changes
* add test for modified DVC-tracked data when generating experiment
* test with and without params change
* handle run without target
* exp: add util method for getting baseline HEAD during run
* exp: use baseline for dvc commands which compare to HEAD during exp run
* add test for new util method
* update plots diff test mock
* stage: support explicit allow_missing in checkout
* exp: explicitly clear EXEC_BRANCH and checkout with allow_missing on
starting experiment run
* git: wrap stash apply errors with SCMError
* git: add `git status` to backends
* exp: reset staged git changes before workspace exp runs to avoid merge
conflicts
* test untracked (and staged) pipeline file and deps for both workspace
and tmpdir runs
* experiments: explicitly track pipeline files and uncached deps for exp
commmits
* fix exp typing errors
* experiments: move executor into a module
* experiments: separate executor into base/local
* rename LocalExecutor to TempDirExecutor, run in .dvc/tmp by default
* git: restore HEAD using reset not checkout in detached_head()
* experiments: support calling BaseExecutor.reproduce directly for
workspace runs
* experiments: run single experiments in local workspace by default
* update experiments tests for workspace changes
* experiments: update checkpoints for workspace runs
* update checkpoints tests
* update test_show
* add force param for apply
* exp apply: add --force option
* exp run/res: add --temp option to force tempdir execution for single
experiments
* force apply in non-apply specific tests
* [WIP] git: use dulwich for add/commit
* dulwich: add is_tracked implementation
* experiments: try to workaround windows cleanup() bug on py < 3.8
* tests: experiments: convert CRLF to LF before comparing params
* git: fix Stash.push args typing
* experiments: handle case where args file was inadvertently committed to
git
* add test for args file being committed to git
* experiments: commit to refs/exps/... instead of branch heads
* update exp show
* restore checkpoint_resume kwarg
* refactor new() to use experiments stash
* experiments: use refspecs to populate and collect executors
* experiments: use new stash and merge on exp checkout
* experiments: fix executor chdir
* experiments: update run and show
* skip checkout after reproduce
* checkpoints: use experiments refspecs
* check if workspace was stashed before applying
* exp show: unify checkpoint/standalone experiment collection
* git: move iter_refs to backend
* update for scm changes
* experiments: replace exp checkout in favor of exp apply
* git: handle rev_parse errors in resolve_commit
* update refs containing and baseline check
* fix sigint handling for checkpoints
* update checkpoint exists behavior
* fix checkpoint baseline behavior
* update tests
* experiments: update gc
* update show tests
* fix type checking errors
* update diff
* scm: add diff, describe
* experiments: generate human readable names
* exp run/resume: allow user specified exp name with -n/--name
* update tests
* experiments: add `exp branch` for promoting experiment to full branch
* fix test
* fix missing file
* experiments: explicitly close scm instances before cleaning up tmp dir
* tree: use file_mode in upload() for trees that support modes
* experiments: preserve file_mode for files in the workspace
* skip permissions tests on windows
* LocalTree: separate chmod from protect
* fix rebase issue
* experiments: Allow branching from checkpoints with modified hyper params
* experiments: initial checkpoints tree functionality for `exp show`
* go back to flat/sortable view
* add test for resume w/modified params
* tests: move experiments fixtures into conftest
* add show checkpoints test
* test checkpoint table rendering
* remove dead code
* test show for checkpoint branches
* experiments: refactor regular/checkpoint experiment separation
* fix scm_checkout pull bug
* experiments: return stages from executor.reproduce
* since executor has to move to threadpool execution anyways, we no
longer have to work around the pickle repro result limitation
* refactor new/resume behavior
* refactor checkpoints tests
* use -f to force checkpoints reset/restart
* checkpoints: use 'exp run' and 'exp res[ume]' commands
* stage: all outs can be missing for checkpoint stages
* regular outputs may not be written at the time a checkpoint is
generated, but subsequent checkouts of that stage should not fail due
to the missing outs
* commit stage on checkpoint generation otherwise non-persist cached outs
are lost
* checkpoints: wait for stage proc to end after killing via terminate()
* stage: fix issues with killing checkpoint stage
* refactor signaling (use threading.Event instead of Condition)
* fix windows bug (kill all child processes via taskkill)
* experiments: refactor executor collection
* tests: move checkpoint tests into separate module
* refactor experiment tests to use stage fixture
* Allow setting of list parameteres
Check if dict is Mapping or list before using .get()
* Added test for dvc exp run with list paramater
* Add more tests for string parameter modification
* stage: make runs checkpointable
* api: add make_checkpoint API call
* tests: add test for checkpointed stage
* experiments: implement checkpoints callback chain
* initial working state
* use .dvc/tmp for checkpoint signal file location
* force repro for checkpoint experiments
* checkout: add flag to allow missing persistent outputs
(i.e. not yet created)
* use allow_persist_missing on checkpoint experiment repro
* executor: force checkout before checkpoints experiment repro
* move checkpoint commands to `dvc exp run`
* support resuming checkpoint runs with --continue
* fix git bugs
* experiments: include checkpoint commits in `exp show`
* use 1sec sleep timers
* fix apply_workspace test conflict
* tests: add test for `dvc exp run`
* cleanup signal file behavior
* fix bool conversion
* tests: add tests for checkpoint and checkpoint_continue
* fix styling
* fix checkpoint stage test
* fix checkpoint monitor thread condition/notification
* plots: add -e/--experiment option for plots diff
* experiments: add method to get baseline for a given experiment
* plots: default to diff against baseline instead of workspace/head for experiments
* use exact match for experiments RE since name-rev may return relative
commits
* executor: abstract tmpdir population using tree upload
* experiments: unmark flaky test
* fix wrong tree download
* LocalTree: use os.replace instead of os.rename in _upload
* experiments: add initial experiments.show
* only includes metrics + params (no code/data information)
* experiments: basic `dvc experiments show` functionality
* experiments: clone and run repro inside clone workspace
* repro: add -e/--experiment option
* experiments: hash experiments to identify duplicates
* experiments: update show
* experiments: checkout experiment after running repro
* experiments: add `dvc experiments checkout`
* experiments: add simple `dvc experiments diff` command
* just shows combined output from `metrics diff` and `plots diff` for
now
* add very simple tests
* add some useful output messages
* experiments: suppress help messages while feature is in development
* experiment related commands will be accessible but hidden from the
default command help messages
* add simple experiments command tests
* experiments: disable feature by default
* experiments only enabled in test environment (DVC_TEST) or when
core.experiments config option is true
* use fetch on checkout missing revs
Batuhan Taskaya
GaoandPeter Rowlands
Matthew Beckers
Saugat Pachhai
Sami Jawhar
Ruslan Kuprieiev
Alexanderandaandrusenko