Initial simple separation to get the process of extracting dvc-objects
and dvc-data packages out of dvc.
dvc-objects is for:
* defining base Object (aka HashFile) and ObjectDB
* providing tools to work with those objects (check/transfer/etc)
* etc
dvc-data is for:
* defining higher level objects (e.g. Tree)
* bulding objects from the workspace (aka staging)
* projecting objects back into the workspace (aka checkout)
* comparing Tree objects (aka diff)
* defining misc object databases (e.g LocalObjectDB)
* higher-level transfer (e.g. with Tree indexes)
* etc
For example, the objects we use in run-cache are based on dvc-objects
and not on dvc-data, as they have absolutely nothing to do with data
management.
There are still some mixups in the code that will be addressed in the
followups.
* objects.status: use object IDs instead of naive objects
* objects.transfer: use object IDs instead of naive objects
* objects: add ReferenceHashFile
* odb: add ReferenceObjectDB
* repo: collect used object IDs instead of naive objs
* support basic/naive fs serialization
* objects.stage: stage file objects in addition to trees
* objects: remove save(), update transfer()
* output/dep: update for osave removal
* path_info: support both url and path attributes
* status/gc: use object IDs instead of naive objs
* diff: update staging usage
* commit: update staging usage
* tests: clean staging when needed
* tests: update for save/transfer/stage changes
* dvcfs: don't allow config serialization (repofs should be used instead)
* utils: return mtime as str, size as int
* tests: update unit tests for save/stage/transfer changes
* objects: use Repo.open when needed in ReferenceHashFile
* fix ls test staging
* objects.stage: don't skip hash check when loading from state
- individual hashes will still be loaded from state if they are still
valid
* ReferenceHashFile: serialize repo fs paths relative to repo root
* preserve state when staging
* objects.tree: skip hash computation in digest() when we have already
loaded hash from state
* always check file existence in referencehashfile
* update repofs test since stage no longer allows nonexistent files
* odb: only protect on check() if hash was verified
* staging: use unique memfs namespace for staging per dest ODB
* tests: clean full staging namespace
* refodb: preserve repofs cache dir
* repodependency: stage imports to local ODB and strict check circular
imports
* fetch: fetch staging last
* staging: make dest odb mandatory and preserve state
* refodb: cache nonlocal fs's
* fix rebase errors
* repofs: support full instantiation from fs config
* repofs: preserve subrepo factory for erepos
* tests: clarify repofs dirty file behavior
* plots: allow dir plots
* first scenario
* separate dvclive tests
* rename index to step
* another test
* refactor
* its ok to have step in data
* sort plots
* introduce --logs
* add logs to run commands
* variable name refactoring
* fix logs option
* fixup
* cmd: run: fix unit tests
* plots: modify: fix tests
* improve dir handling
* fixup
* dvclive: logs summary
* api: introduce logs summarization method
* handle no repo case
* fix granular dir plots
* api: dvclive: simplify
* dvclive: roll back logs flag
* cmd: introduce logs
* api: adjust to logs
* test: dvclive fix
* rename logs to dvclive
* live: command: add uninitialized
* outs: dvclive type
* dvclive: support providing config via evn variables
* dvclive: treat as metrics
* dvclive integration: add support for summary on/off
* dvc integration: add temporary test for configuration export
* remove requirements
* cmd: introduce logs
* rename logs to dvclive
* cmd: introduce logs
* remove logs leftowvers
* dvclive: env: adjust to chekpoints env variables
* command: live: remove unnecessary help
* fix linter suggestions
* type hinting
* review refactor
* replace dvclive with live
* stage: loading: move live loading to separate method
* stage: serialize: allow only single live output
* live: add show/diff
* stage: serialize: roll back single live enforcing
* fixup
* rebase fixups
* output: live: force single instance
* live: command: add unit tests
* Update dvc/output/base.py
Co-authored-by: Ruslan Kuprieiev <[email protected]>
* Update dvc/stage/__init__.py
Co-authored-by: Ruslan Kuprieiev <[email protected]>
* Update dvc/stage/serialize.py
Co-authored-by: Ruslan Kuprieiev <[email protected]>
* review v2
* live: fix summary tracking by experiments
* naming fixups
* api: live: add tests
* tests: api: separate live tests
Co-authored-by: Ruslan Kuprieiev <[email protected]>
This PR is just a showcase to see how we like it. I've converted a few
tests to it, but there will be much more to come.
```
assert (tmp_dir / "file") == "contents"
assert (tmp_dir / "dir").read_text() == {"subdir": {"file": "hello"}}
```
This approach is nicer because it allows us to use a declaratory
asserts instead of relying on fs files. The problem becomes much more
apparent once you get into remote workspaces, where we `trees_equal`
doesn't work.
* state: use ignore file handler when accessing metadata
* fs: don't add dir size to overall size for dir
* ignore: use posix-like path on windows
* ignore: remove tree from dvc_walk arguments
* ignore: handle DvcIgnoreFilter creation outside of DVC repo
* ignore: throw on dvcignore file under output dir, but not dependency dir
* ignore: move ignore initialization to Repo init
* ignore: work in progress
* ignore: work in progress 2
* ignore: throw on .dvcignore upon collecting dir
* ignore: refactor
* ignore: loading upper level ignores in stages()
* Update dvc/repo/__init__.py
Co-Authored-By: Ruslan Kuprieiev <[email protected]>
* dvcignore review refactor
* test: remove never used copy of load_stage_file()
* dvc: save comments and custom formatting in stage files
* Add a couple of TODOs
* test: test repro doesn't clear comments and formatting in .dvc
As part of this I started writing pytest-like tests and added commonly
used fixtures.
* test: simplify and prettify dvc formatting retained test
Also test that line comments after md5 fields are retained.
* test: fix tests
* dvc: fix stage and metrics opens not closed
* dvc: always use utf-8 in stage files
It used to encode in system default encoding. Not sure if PyYAML was
handling this silently or we were just lucky all the way.
* test: unit test apply_diff()
* test: remove TODOs and ASK
* dvc: polish dvc-formatting PR
* dvc: move stage load/dump utils to a new stage utils file
* dvc: clean up apply_diff()
* test: test stage md5 ignores comments
* test: remove pytests starting marker
pre-commit-ci[bot]
Ruslan Kuprieiev
Saugat Pachhai (सौगात)
karajan1001
Paweł RedzyńskiandRuslan Kuprieiev
Fábio Santos
Ruslan Kuprieiev
Alexander Schepanovski
Mr. Outis
Andrew Grigorev