* dvc/tree/local: fix it for no repo/cache case
fixes#5069
* Update dvc/output/base.py
* Update dvc/output/base.py
Co-authored-by: Ruslan Kuprieiev <[email protected]>
* #4578 added is_user_executable to dvc file
* Addressed PR feedback and introduced test_add_executable
Also fixed all tests in test_add.py
* Added a test to checkout executable file
* Pop isexec in dvc/output/__init__.py:loadd_from
* Implement test that file is executable after checkout
* Address PR feedback
* Address PR feedback
* Changed BaseTree.isexec to use path_info as an argument
* Update tests/func/test_add.py
* Update tests/func/test_add.py
* Update tests/func/test_add.py
* Update tests/func/test_add.py
* fix formatting
* add: preserve exec
* checkout: fix setting exec
* tests: refactor checkout exec test
* tests: fix windows cases
* tests: add: fix exec test on windows
* Update dvc/tree/local.py
* Update dvc/output/base.py
* Update dvc/output/base.py
* Update dvc/cache/base.py
* Update tests/func/test_add.py
* tests: add: skip whole exec test on windows
* save isexec to lockfiles
* fix formatting
Co-authored-by: Ruslan Kuprieiev <[email protected]>
Co-authored-by: Ruslan Kuprieiev <[email protected]>
* experiments: move executor into a module
* experiments: separate executor into base/local
* rename LocalExecutor to TempDirExecutor, run in .dvc/tmp by default
* git: restore HEAD using reset not checkout in detached_head()
* experiments: support calling BaseExecutor.reproduce directly for
workspace runs
* experiments: run single experiments in local workspace by default
* update experiments tests for workspace changes
* experiments: update checkpoints for workspace runs
* update checkpoints tests
* update test_show
* add force param for apply
* exp apply: add --force option
* exp run/res: add --temp option to force tempdir execution for single
experiments
* force apply in non-apply specific tests
Currently, we iterate over targets manually in CLI, which results in a
complicated code and a DAG collection/check overhead. With this PR we
collect the DAG once, figure out all the needed targets within it and
just reproduce them in one pass.
minor refactors, code comments
Rename interim to definitions
provide location of entry during init for definition
small fixups to set_temporarily
Refactor loop to use dict comprehension
Provide same interface for definitions
Make it work for composite lists
Check for sequence rather than a list
refactor tests
Fixes#4955Fixes#4957Fixes#4963
Currently we don't handle bad name well:
```
(dvc-3.8.3) ➜ dvc git:(config-bug) ✗ dvc config section
ERROR: unexpected error - not enough values to unpack (expected 2, got 1)
```
With this PR, we check name to conform to either `remote.name.option` or
`section.option`, so we'll give a more friendly:
```
(dvc-3.8.3) ➜ dvc git:(config-bug) ✗ dvc config section
ERROR: argument name: name argument should look like remote.name.option or section.option
usage: dvc config [-h] [--global | --system | --local] [-q | -v] [-u] [-l] [name] [value]
Get or set config options.
Documentation: <https://man.dvc.org/config>
positional arguments:
name Option name (remote.name.option or section.option).
value Option value.
optional arguments:
-h, --help show this help message and exit
--global Use global config.
--system Use system config.
--local Use local config.
-q, --quiet Be quiet.
-v, --verbose Be verbose.
-u, --unset Unset option.
-l, --list List all defined config values.
```
We try to optimize `tree.exists` calls and probably few others
in that they either look directly into the workspace or,
to the cache without running graph checks. It does not seem
to be possible just to run graph checks on `find_outs_by_path`
due to those optimizations.
So, that's why, the `collect` also does a graph check for this
reason.
Fixes#5027Fixes#4010
* experiments: add utils.exp_commits for iterating over experiment commits
* repo: add support for all_experiments in brancher and used_cache
* git: make all_commits return commits in standard refs instead of --all
* gc: add --all-experiments to preserve cache for experiments
* update gc tests
* repo: support pushing and fetching specific revs internally
* exp push: push cache for experiment by default
* exp pull: pull cache for experiment by default
* fix empty git repo bug
* [WIP] git: use dulwich for add/commit
* dulwich: add is_tracked implementation
* experiments: try to workaround windows cleanup() bug on py < 3.8
* tests: experiments: convert CRLF to LF before comparing params
* trie: updated message for OverlappingOutputsError
the message given by the exception was not verbose enough why this exception is thrown.
now gives the user more information as to why the overlapping paths should be changed.
* test_run_single_stage: fixed test TestShouldRaiseOnOverlappingOutputPaths
the test is now updated to reflect the exception message changes.
Signed-off-by: metalglove <[email protected]>
* git: remove scm from backends, make backends configurable
* git: implement get/set/remove ref in gitpython
* git: support reflog --rewrite for stash
* tests: support testing individual backends in unit/scm/test_git
* stash: create reflog if it does not exist for gitpython backend
* git: fix Stash.push args typing
* experiments: handle case where args file was inadvertently committed to
git
* add test for args file being committed to git
* run/repro: show command on dry-run, add ">" to script output
This rollbacks the earlier commit to not show command during
the dry-run, and also prepends ">" in the command script
instead of "$" sign.
* fix tests
* Allow list type in STAGE_DEFINITION scheme and join(cmd) if list
* Remove join in Stage.__init__ and update test
* Loop over commands in cmd_run
* Improve logging of stage.run with detailed by command
* Fix test based on log message
* Update command logging with >
* Add tests for multi lines command
* Update > to $ in stage command log to prevent confusion with > operator
* Fix PR review about test: single quote and read_text
* tests: unify/clarify tests
Co-authored-by: Ruslan Kuprieiev <[email protected]>
* WIP fixes#4621
* changes to all_branch if condition
* flatten_dict changes
* fix one test
* minor changes
* minor changes
* add precision
* tests and added precision to arguments
Co-authored-by: indh8717 <[email protected]>
* experiments: commit to refs/exps/... instead of branch heads
* update exp show
* restore checkpoint_resume kwarg
* refactor new() to use experiments stash
* experiments: use refspecs to populate and collect executors
* experiments: use new stash and merge on exp checkout
* experiments: fix executor chdir
* experiments: update run and show
* skip checkout after reproduce
* checkpoints: use experiments refspecs
* check if workspace was stashed before applying
* exp show: unify checkpoint/standalone experiment collection
* git: move iter_refs to backend
* update for scm changes
* experiments: replace exp checkout in favor of exp apply
* git: handle rev_parse errors in resolve_commit
* update refs containing and baseline check
* fix sigint handling for checkpoints
* update checkpoint exists behavior
* fix checkpoint baseline behavior
* update tests
* experiments: update gc
* update show tests
* fix type checking errors
* update diff
* scm: add diff, describe
* experiments: generate human readable names
* exp run/resume: allow user specified exp name with -n/--name
* update tests
* experiments: add `exp branch` for promoting experiment to full branch
* fix test
* fix missing file
* experiments: explicitly close scm instances before cleaning up tmp dir
* git: add support for dulwich Stash
* git: start adding support for custom refs
* git: add Stash and helper context managers for preserving
workspace state
* scm: cleanup refs/stash and add push_refspec
* tests: add tests for git refs and stash
* fix push_refspec
* tests: add tests for git push_refspec
* scm: add git fetch-refspecs
* add test for fetch refspecs
* scm: add test for git refs containing
* remove extraneous log msgs
* fix typing issues
* stash: only try to push if workspace is dirty
* update dulwich to 0.20.14
* scm: move dulwich into scm.backend
* move stash internals to backends
* scm: move git code into dvc/scm/git/... module
* git: use ABC for BaseGitBackend
* fix rebase issue
* git: fix refspec tests on windows
- git file:// URLs need posix style paths
* git: move get_refs_containing to backend
* scm: add callback for handling diverged refs during fetch
* repro: support regex/foreach-group to run at once
Fixes#4912Fixes#4886Fixes#4958
* Use `tree.isdir` rather than `os.path.isdir`
* Use glob rather than regex
* Update dvc/command/repro.py
* s/regex/glob
* disable glob on `collect_granular`
There's no need for a glob here
* add tests for `collect` and `collect_granular`
* s3: use mocked s3 instead of the real one
Not removing the fixtures just yet
* Update moto
Tests was failing, because of a change in `responses` package, which
`moto` was mocking. This was fixed on
https://github.com/spulec/moto/pull/3466 which is only available on
`dev122` release.
* Use mocked s3 in checkout tests
Peter Rowlands (변기호)
Ioana Grigoropol
Dmitry KropachevandRuslan Kuprieiev
devramx
Paweł Redzyński
Sandeep MistryandRuslan Kuprieiev
Saugat Pachhai
Batuhan Taskaya
GaoandSaugat Pachhai
metalglove
Clément WalterandRuslan Kuprieiev
jwokatyandRuslan Kuprieiev
Indhu Kumarandindh8717