mirror of
https://github.com/Stone-Red-Code/dvc.git
synced 2026-11-02 07:18:25 +01:00
implement import-db command (#10040)
* implement import-db command * generate .dvc file * update * fix tests * pin dbt-fal * try to run on ci * use os.chdir * fix * revert * require dbt-core>=1.5 * add db config schema * remove platformdirs constraints * use logger.getChild * improve error messaging * rename cli flag --export-format to --output-format * use feature flag for db config * hide command from dvc commands list * refactor dependency._get * remove todo * refactor dependency._get * fix dbt installation check
This commit is contained in:
@@ -26,6 +26,7 @@ from dvc.commands import (
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get_url,
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git_hook,
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imp,
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imp_db,
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imp_url,
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init,
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install,
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@@ -65,6 +66,7 @@ COMMANDS = [
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data_sync,
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gc,
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imp,
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imp_db,
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imp_url,
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config,
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checkout,
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@@ -0,0 +1,90 @@
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import argparse
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from dvc.cli import completion
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from dvc.cli.command import CmdBase
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from dvc.cli.utils import append_doc_link
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from dvc.log import logger
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logger = logger.getChild(__name__)
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class CmdImportDb(CmdBase):
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def run(self):
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if not (self.args.sql or self.args.model):
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raise argparse.ArgumentTypeError("Either of --sql or --model is required.")
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self.repo.imp_db(
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url=self.args.url,
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rev=self.args.rev,
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project_dir=self.args.project_dir,
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sql=self.args.sql,
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model=self.args.model,
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profile=self.args.profile,
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target=self.args.target,
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output_format=self.args.output_format,
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out=self.args.out,
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force=self.args.force,
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)
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return 0
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def add_parser(subparsers, parent_parser):
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IMPORT_HELP = (
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"Download file or directory tracked by DVC or by Git "
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"into the workspace, and track it."
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)
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import_parser = subparsers.add_parser(
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"import-db",
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parents=[parent_parser],
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description=append_doc_link(IMPORT_HELP, "import"),
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add_help=False,
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)
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import_parser.add_argument(
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"--url", help="Location of DVC or Git repository to download from"
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)
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import_parser.add_argument(
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"--rev",
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nargs="?",
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help="Git revision (e.g. SHA, branch, tag)",
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metavar="<commit>",
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)
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import_parser.add_argument(
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"--project-dir", nargs="?", help="Subdirectory to the dbt project location"
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)
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group = import_parser.add_mutually_exclusive_group()
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group.add_argument(
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"--sql",
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help="SQL query",
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)
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group.add_argument(
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"--model",
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help="Model name to download",
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)
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import_parser.add_argument("--profile", help="Profile to use")
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import_parser.add_argument("--target", help="Target to use")
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import_parser.add_argument(
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"--output-format",
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default="csv",
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const="csv",
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nargs="?",
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choices=["csv", "json"],
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help="Export format",
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)
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import_parser.add_argument(
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"-o",
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"--out",
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nargs="?",
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help="Destination path to download files to",
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metavar="<path>",
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).complete = completion.FILE
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import_parser.add_argument(
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"-f",
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"--force",
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action="store_true",
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default=False,
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help="Override destination file or folder if exists.",
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)
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import_parser.set_defaults(func=CmdImportDb)
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@@ -318,6 +318,8 @@ SCHEMA = {
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"feature": FeatureSchema(
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{
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Optional("machine", default=False): Bool,
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"db_profile": str,
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"db_target": str,
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},
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),
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"plots": {
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@@ -4,6 +4,7 @@ from typing import Any, Dict, List, Mapping, Set
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from dvc.output import ARTIFACT_SCHEMA, DIR_FILES_SCHEMA, Output
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from .base import Dependency
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from .db import DB_SCHEMA, PARAM_DB, DbDependency, DbtDependency
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from .param import ParamsDependency
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from .repo import RepoDependency
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@@ -14,20 +15,28 @@ from .repo import RepoDependency
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SCHEMA: Mapping[str, Any] = {
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**ARTIFACT_SCHEMA,
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**RepoDependency.REPO_SCHEMA,
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**DB_SCHEMA,
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Output.PARAM_FILES: [DIR_FILES_SCHEMA],
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Output.PARAM_FS_CONFIG: dict,
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}
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def _get(stage, p, info, **kwargs):
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if info and info.get(RepoDependency.PARAM_REPO):
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repo = info.pop(RepoDependency.PARAM_REPO)
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return RepoDependency(repo, stage, p, info)
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d = info or {}
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db = d.get(PARAM_DB, {})
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params = d.pop(ParamsDependency.PARAM_PARAMS, None)
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repo = d.pop(RepoDependency.PARAM_REPO, None)
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if info and info.get(ParamsDependency.PARAM_PARAMS):
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params = info.pop(ParamsDependency.PARAM_PARAMS)
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if params:
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return ParamsDependency(stage, p, params)
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if DbDependency.PARAM_QUERY in db:
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return DbDependency(stage, info)
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if db:
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return DbtDependency(repo, stage, info)
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assert p
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if repo:
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return RepoDependency(repo, stage, p, info)
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return Dependency(stage, p, info, **kwargs)
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@@ -44,9 +53,11 @@ def loadd_from(stage, d_list):
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return ret
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def loads_from(stage, s_list, erepo=None, fs_config=None):
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def loads_from(stage, s_list, erepo=None, fs_config=None, db=None):
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assert isinstance(s_list, list)
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info = {RepoDependency.PARAM_REPO: erepo} if erepo else {}
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if db:
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info.update({"db": db})
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return [
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_get(
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stage,
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@@ -0,0 +1,288 @@
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import os
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from contextlib import contextmanager
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from typing import TYPE_CHECKING, Any, Dict, Iterator, Union
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from funcy import compact
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from dvc.exceptions import DvcException
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from dvc.log import logger
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from dvc.scm import SCM
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from .base import Dependency
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if TYPE_CHECKING:
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from agate import Table
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from rich.status import Status
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from dvc.stage import Stage
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logger = logger.getChild(__name__)
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PARAM_DB = "db"
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PARAM_PROFILE = "profile"
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PARAM_FILE_FORMAT = "file_format"
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def _get_db_config(config: Dict) -> Dict:
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conf = config.get("feature", {})
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pref = "db_"
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return {k.lstrip(pref): v for k, v in conf.items() if k.startswith(pref)}
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@contextmanager
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def log_status(msg, log=logger.debug) -> Iterator["Status"]:
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from funcy import log_durations
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from dvc.ui import ui
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with log_durations(log, msg), ui.status(msg) as status:
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yield status
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@contextmanager
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def chdir(path):
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wdir = os.getcwd()
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os.chdir(path)
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try:
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yield
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finally:
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os.chdir(wdir)
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def export_to(table: "Table", to: str, file_format: str = "csv") -> None:
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exporter = {"csv": table.to_csv, "json": table.to_json}
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return exporter[file_format](to)
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class AbstractDependency(Dependency):
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"""Dependency without workspace/fs/fs_path"""
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def __init__(self, stage: "Stage", info, *args, **kwargs):
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self.repo = stage.repo
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self.stage = stage
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self.fs = None
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self.fs_path = None
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self.def_path = None # type: ignore[assignment]
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self.info = info or {}
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class DbDependency(AbstractDependency):
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PARAM_QUERY = "query"
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QUERY_SCHEMA = {PARAM_QUERY: str}
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def __init__(self, stage: "Stage", info, *args, **kwargs):
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super().__init__(stage, info, *args, **kwargs)
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self.target = None
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def __repr__(self):
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return "{}:{}".format(
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self.__class__.__name__, "".join(f"{k}=={v}" for k, v in self.info.items())
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)
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def __str__(self):
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from dvc.utils.humanize import truncate_text
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db_info = self.info.get(PARAM_DB, {})
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query = db_info.get(self.PARAM_QUERY, "[query]")
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return truncate_text(query, 50)
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def workspace_status(self):
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return False # no workspace to check
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def status(self):
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return self.workspace_status()
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def save(self):
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"""nothing to save."""
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def dumpd(self, **kwargs):
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db_info = compact(self.info.get(PARAM_DB, {}))
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return {PARAM_DB: db_info} if db_info else {}
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def update(self, rev=None):
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"""nothing to update."""
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def download(self, to, jobs=None, file_format=None): # noqa: ARG002
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db_info = self.info.get(PARAM_DB, {})
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query = db_info.get(self.PARAM_QUERY)
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if not query:
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raise DvcException("Cannot download: no query specified")
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from dvc.utils.db import _check_dbt, _profiles_dir, execute_sql
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db_config = _get_db_config(self.repo.config)
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profile = db_info.get(PARAM_PROFILE) or db_config.get(PARAM_PROFILE)
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target = self.target or db_config.get("target")
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file_format = file_format or db_info.get(PARAM_FILE_FORMAT, "csv")
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_check_dbt(self.PARAM_QUERY)
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profiles_dir = _profiles_dir(self.repo.root_dir)
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with log_status("Executing query") as status:
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table = execute_sql(
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query,
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profiles_dir,
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self.repo.root_dir,
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profile,
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target=target,
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status=status,
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)
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# NOTE: we keep everything in memory, and then export it out later.
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with log_status(f"Saving to {to}"):
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return export_to(table, to.fs_path, file_format)
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class DbtDependency(AbstractDependency):
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PARAM_MODEL = "model"
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PARAM_VERSION = "version"
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PARAM_PROJECT_DIR = "project_dir"
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DBT_SCHEMA = {
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PARAM_MODEL: str,
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PARAM_VERSION: str,
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PARAM_PROJECT_DIR: str,
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}
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def __init__(self, def_repo: Dict[str, Any], stage: "Stage", info, *args, **kwargs):
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self.def_repo = def_repo or {}
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self.target = None
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super().__init__(stage, info, *args, **kwargs)
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def __repr__(self):
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return "{}:{}".format(
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self.__class__.__name__,
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"".join(f"{k}=={v}" for k, v in {**self.def_repo, **self.info}.items()),
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)
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def __str__(self):
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from .repo import RepoDependency
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repo = self.def_repo.get(RepoDependency.PARAM_URL)
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rev = self.def_repo.get(RepoDependency.PARAM_REV)
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db_info = self.info.get(PARAM_DB, {})
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db = db_info.get(self.PARAM_MODEL, "")
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project_dir = db_info.get(self.PARAM_PROJECT_DIR, "")
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repo_info = ""
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if repo:
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repo_info += repo
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if rev:
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repo_info += f"@{rev}"
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if project_dir:
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repo_info += f":/{project_dir}"
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return db + (f"({repo_info})" if repo_info else "")
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@property
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def locked_rev(self):
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from .repo import RepoDependency
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return self.def_repo.get(RepoDependency.PARAM_REV_LOCK)
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@property
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def rev(self):
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from .repo import RepoDependency
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return self.def_repo.get(RepoDependency.PARAM_REV)
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def workspace_status(self):
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if not self.def_repo:
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return
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current = self._get_clone(self.locked_rev or self.rev).get_rev()
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updated = self._get_clone(self.rev).get_rev()
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if current != updated:
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return {str(self): "update available"}
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return {}
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def status(self):
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return self.workspace_status()
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def save(self):
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from .repo import RepoDependency
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if not self.def_repo:
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return
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rev = self._get_clone(self.locked_rev or self.rev).get_rev()
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if self.def_repo.get(RepoDependency.PARAM_REV_LOCK) is None:
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self.def_repo[RepoDependency.PARAM_REV_LOCK] = rev
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def dumpd(self, **kwargs) -> Dict[str, Union[str, Dict[str, str]]]:
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from .repo import RepoDependency
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def_repo = {}
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if self.def_repo:
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def_repo = RepoDependency._dump_def_repo(self.def_repo)
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db_info = compact(self.info.get(PARAM_DB, {}))
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return compact({RepoDependency.PARAM_REPO: def_repo, PARAM_DB: db_info})
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def _get_clone(self, rev):
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from dvc.repo.open_repo import _cached_clone
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|
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from .repo import RepoDependency
|
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|
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url = self.def_repo.get(RepoDependency.PARAM_URL)
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repo_root = self.repo.root_dir if self.repo else os.getcwd()
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return SCM(_cached_clone(url, rev) if url else repo_root)
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|
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def update(self, rev=None):
|
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from .repo import RepoDependency
|
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|
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if not self.def_repo:
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return
|
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|
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if rev:
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self.def_repo[RepoDependency.PARAM_REV] = rev
|
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else:
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rev = self.rev
|
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self.def_repo[RepoDependency.PARAM_REV_LOCK] = self._get_clone(rev).get_rev()
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|
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def download(self, to, jobs=None, file_format=None): # noqa: ARG002
|
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from dvc.ui import ui
|
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|
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from .repo import RepoDependency
|
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|
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project_dir = self.info.get(PARAM_DB, {}).get(self.PARAM_PROJECT_DIR, "")
|
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if self.def_repo:
|
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repo = self._get_clone(self.locked_rev or self.rev)
|
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self.def_repo[RepoDependency.PARAM_REV_LOCK] = repo.get_rev()
|
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root = wdir = repo.root_dir
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else:
|
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root = self.repo.root_dir
|
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wdir = self.stage.wdir
|
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|
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project_path = os.path.join(wdir, project_dir) if project_dir else root
|
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|
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with chdir(project_path):
|
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self._download_db(to, file_format=file_format)
|
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ui.write(f"Saved file to {to}", styled=True)
|
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|
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def _download_db(self, to, version=None, file_format=None):
|
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from dvc.utils.db import get_model
|
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|
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db_info = self.info.get(PARAM_DB, {})
|
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model = db_info.get(self.PARAM_MODEL)
|
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if not model:
|
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raise DvcException("Cannot download, no model specified")
|
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|
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db_config = _get_db_config(self.repo.config)
|
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version = version or db_info.get(self.PARAM_VERSION)
|
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profile = db_info.get(PARAM_PROFILE) or db_config.get(PARAM_PROFILE)
|
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target = self.target or db_info.get("target")
|
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file_format = file_format or db_info.get(PARAM_FILE_FORMAT, "csv")
|
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|
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with log_status("Downloading model"):
|
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table = get_model(model, version=version, profile=profile, target=target)
|
||||
# NOTE: we keep everything in memory, and then export it out later.
|
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with log_status(f"Saving to {to}"):
|
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export_to(table, to.fs_path, file_format=file_format)
|
||||
|
||||
|
||||
DB_SCHEMA = {
|
||||
PARAM_DB: {
|
||||
PARAM_PROFILE: str,
|
||||
PARAM_FILE_FORMAT: str,
|
||||
**DbDependency.QUERY_SCHEMA,
|
||||
**DbtDependency.DBT_SCHEMA,
|
||||
},
|
||||
}
|
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+14
-11
@@ -64,28 +64,31 @@ class RepoDependency(Dependency):
|
||||
if self.def_repo.get(self.PARAM_REV_LOCK) is None:
|
||||
self.def_repo[self.PARAM_REV_LOCK] = rev
|
||||
|
||||
def dumpd(self, **kwargs) -> Dict[str, Union[str, Dict[str, str]]]:
|
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repo = {self.PARAM_URL: self.def_repo[self.PARAM_URL]}
|
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@classmethod
|
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def _dump_def_repo(cls, def_repo) -> Dict[str, str]:
|
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repo = {cls.PARAM_URL: def_repo[cls.PARAM_URL]}
|
||||
|
||||
rev = self.def_repo.get(self.PARAM_REV)
|
||||
rev = def_repo.get(cls.PARAM_REV)
|
||||
if rev:
|
||||
repo[self.PARAM_REV] = self.def_repo[self.PARAM_REV]
|
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repo[cls.PARAM_REV] = def_repo[cls.PARAM_REV]
|
||||
|
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rev_lock = self.def_repo.get(self.PARAM_REV_LOCK)
|
||||
rev_lock = def_repo.get(cls.PARAM_REV_LOCK)
|
||||
if rev_lock:
|
||||
repo[self.PARAM_REV_LOCK] = rev_lock
|
||||
repo[cls.PARAM_REV_LOCK] = rev_lock
|
||||
|
||||
config = self.def_repo.get(self.PARAM_CONFIG)
|
||||
config = def_repo.get(cls.PARAM_CONFIG)
|
||||
if config:
|
||||
repo[self.PARAM_CONFIG] = config
|
||||
repo[cls.PARAM_CONFIG] = config
|
||||
|
||||
remote = self.def_repo.get(self.PARAM_REMOTE)
|
||||
remote = def_repo.get(cls.PARAM_REMOTE)
|
||||
if remote:
|
||||
repo[self.PARAM_REMOTE] = remote
|
||||
repo[cls.PARAM_REMOTE] = remote
|
||||
return repo
|
||||
|
||||
def dumpd(self, **kwargs) -> Dict[str, Union[str, Dict[str, str]]]:
|
||||
return {
|
||||
self.PARAM_PATH: self.def_path,
|
||||
self.PARAM_REPO: repo,
|
||||
self.PARAM_REPO: self._dump_def_repo(self.def_repo),
|
||||
}
|
||||
|
||||
def update(self, rev: Optional[str] = None):
|
||||
|
||||
+1
-1
@@ -1523,7 +1523,7 @@ CLOUD_SCHEMA = vol.All({str: {**META_SCHEMA, **CHECKSUMS_SCHEMA}}, vol.Length(ma
|
||||
ARTIFACT_SCHEMA: Dict[Any, Any] = {
|
||||
**CHECKSUMS_SCHEMA,
|
||||
**META_SCHEMA,
|
||||
vol.Required(Output.PARAM_PATH): str,
|
||||
Output.PARAM_PATH: str,
|
||||
Output.PARAM_PERSIST: bool,
|
||||
Output.PARAM_CLOUD: CLOUD_SCHEMA,
|
||||
Output.PARAM_HASH: str,
|
||||
|
||||
@@ -76,6 +76,7 @@ class Repo:
|
||||
from dvc.repo.get import get as _get # type: ignore[misc]
|
||||
from dvc.repo.get_url import get_url as _get_url # type: ignore[misc]
|
||||
from dvc.repo.imp import imp # type: ignore[misc]
|
||||
from dvc.repo.imp_db import imp_db # type: ignore[misc]
|
||||
from dvc.repo.imp_url import imp_url # type: ignore[misc]
|
||||
from dvc.repo.install import install # type: ignore[misc]
|
||||
from dvc.repo.ls import ls as _ls # type: ignore[misc]
|
||||
|
||||
@@ -135,6 +135,8 @@ def build_graph(stages, outs_trie=None):
|
||||
for stage in stages:
|
||||
if stage.is_repo_import:
|
||||
continue
|
||||
if stage.is_db_import:
|
||||
continue
|
||||
|
||||
for dep in stage.deps:
|
||||
dep_key = dep.fs.path.parts(dep.fs_path)
|
||||
@@ -160,6 +162,8 @@ def build_outs_graph(graph, outs_trie):
|
||||
for stage in graph.nodes():
|
||||
if stage.is_repo_import:
|
||||
continue
|
||||
if stage.is_db_import:
|
||||
continue
|
||||
for dep in stage.deps:
|
||||
dep_key = dep.fs.path.parts(dep.fs_path)
|
||||
overlapping = [n.value for n in outs_trie.prefixes(dep_key)]
|
||||
|
||||
@@ -0,0 +1,80 @@
|
||||
from typing import TYPE_CHECKING, Any, Dict, Optional
|
||||
|
||||
from dvc.exceptions import OutputDuplicationError
|
||||
from dvc.repo.scm_context import scm_context
|
||||
from dvc.ui import ui
|
||||
from dvc.utils import resolve_output, resolve_paths
|
||||
|
||||
if TYPE_CHECKING:
|
||||
from . import Repo
|
||||
|
||||
from . import locked
|
||||
|
||||
|
||||
@locked
|
||||
@scm_context
|
||||
def imp_db( # noqa: PLR0913
|
||||
self: "Repo",
|
||||
url: Optional[str] = None,
|
||||
rev: Optional[str] = None,
|
||||
project_dir: Optional[str] = None,
|
||||
sql: Optional[str] = None,
|
||||
model: Optional[str] = None,
|
||||
version: Optional[int] = None,
|
||||
frozen: bool = True,
|
||||
profile: Optional[str] = None,
|
||||
target: Optional[str] = None,
|
||||
output_format: str = "csv",
|
||||
out: Optional[str] = None,
|
||||
force: bool = False,
|
||||
):
|
||||
ui.warn("WARNING: import-db is an experimental feature.")
|
||||
ui.warn(
|
||||
"The functionality may change or break without notice, "
|
||||
"which could lead to unexpected behavior."
|
||||
)
|
||||
erepo = None
|
||||
if model and url:
|
||||
erepo = {"url": url}
|
||||
if rev:
|
||||
erepo["rev"] = rev
|
||||
|
||||
assert output_format in ("csv", "json")
|
||||
|
||||
db: Dict[str, Any] = {"file_format": output_format}
|
||||
if profile:
|
||||
db["profile"] = profile
|
||||
|
||||
if model:
|
||||
out = out or f"{model}.{output_format}"
|
||||
db.update({"model": model, "version": version, "project_dir": project_dir})
|
||||
else:
|
||||
out = out or "results.csv"
|
||||
db["query"] = sql
|
||||
|
||||
out = resolve_output(url or ".", out, force=force)
|
||||
path, wdir, out = resolve_paths(self, out, always_local=True)
|
||||
stage = self.stage.create(
|
||||
single_stage=True,
|
||||
validate=False,
|
||||
fname=path,
|
||||
wdir=wdir,
|
||||
deps=[url],
|
||||
outs=[out],
|
||||
erepo=erepo,
|
||||
fs_config=None,
|
||||
db=db,
|
||||
)
|
||||
|
||||
stage.deps[0].target = target
|
||||
try:
|
||||
self.check_graph(stages={stage})
|
||||
except OutputDuplicationError as exc:
|
||||
raise OutputDuplicationError( # noqa: B904
|
||||
exc.output, set(exc.stages) - {stage}
|
||||
)
|
||||
|
||||
stage.run()
|
||||
stage.frozen = frozen
|
||||
stage.dump()
|
||||
return stage
|
||||
+8
-1
@@ -135,7 +135,11 @@ def _load_data_from_outs(index, prefix, outs):
|
||||
hash_info=out.hash_info,
|
||||
)
|
||||
|
||||
if out.stage.is_import and not out.stage.is_repo_import:
|
||||
if (
|
||||
out.stage.is_import
|
||||
and not out.stage.is_repo_import
|
||||
and not out.stage.is_db_import
|
||||
):
|
||||
dep = out.stage.deps[0]
|
||||
entry.meta = dep.meta
|
||||
if out.hash_info:
|
||||
@@ -183,6 +187,9 @@ def _load_storage_from_out(storage_map, key, out):
|
||||
except NoRemoteError:
|
||||
pass
|
||||
|
||||
if out.stage.is_db_import:
|
||||
return
|
||||
|
||||
if out.stage.is_import:
|
||||
dep = out.stage.deps[0]
|
||||
if not out.hash_info:
|
||||
|
||||
+21
-2
@@ -105,7 +105,7 @@ def create_stage(cls: Type[_T], repo, path, **kwargs) -> _T:
|
||||
fill_stage_outputs(stage, **kwargs)
|
||||
check_no_externals(stage)
|
||||
fill_stage_dependencies(
|
||||
stage, **project(kwargs, ["deps", "erepo", "params", "fs_config"])
|
||||
stage, **project(kwargs, ["deps", "erepo", "params", "fs_config", "db"])
|
||||
)
|
||||
check_circular_dependency(stage)
|
||||
check_duplicated_arguments(stage)
|
||||
@@ -281,9 +281,24 @@ class Stage(params.StageParams):
|
||||
|
||||
return isinstance(self.deps[0], RepoDependency)
|
||||
|
||||
@property
|
||||
def is_db_import(self) -> bool:
|
||||
if not self.is_import:
|
||||
return False
|
||||
|
||||
from dvc.dependency import DbDependency, DbtDependency
|
||||
|
||||
return isinstance(self.deps[0], (DbDependency, DbtDependency))
|
||||
|
||||
@property
|
||||
def is_versioned_import(self) -> bool:
|
||||
return self.is_import and self.deps[0].fs.version_aware
|
||||
from dvc.dependency import DbDependency, DbtDependency
|
||||
|
||||
return (
|
||||
self.is_import
|
||||
and not isinstance(self.deps[0], (DbDependency, DbtDependency))
|
||||
and self.deps[0].fs.version_aware
|
||||
)
|
||||
|
||||
def short_description(self) -> Optional["str"]:
|
||||
desc: Optional["str"] = None
|
||||
@@ -446,6 +461,9 @@ class Stage(params.StageParams):
|
||||
) -> None:
|
||||
if not (self.is_repo_import or self.is_import):
|
||||
raise StageUpdateError(self.relpath)
|
||||
|
||||
# always force update DbDep/DbtDep since we don't know if it's changed
|
||||
force = self.is_db_import
|
||||
update_import(
|
||||
self,
|
||||
rev=rev,
|
||||
@@ -453,6 +471,7 @@ class Stage(params.StageParams):
|
||||
remote=remote,
|
||||
no_download=no_download,
|
||||
jobs=jobs,
|
||||
force=force,
|
||||
)
|
||||
|
||||
def reload(self) -> "Stage":
|
||||
|
||||
@@ -7,6 +7,7 @@ from funcy import decorator
|
||||
def rwlocked(call, read=None, write=None):
|
||||
import sys
|
||||
|
||||
from dvc.dependency.db import AbstractDependency
|
||||
from dvc.dependency.repo import RepoDependency
|
||||
from dvc.rwlock import rwlock
|
||||
|
||||
@@ -27,7 +28,7 @@ def rwlocked(call, read=None, write=None):
|
||||
for item in getattr(stage, attr)
|
||||
# There is no need to lock RepoDependency deps, as there is no
|
||||
# corresponding OutputREPO, so we can't even write it.
|
||||
if not isinstance(item, RepoDependency)
|
||||
if not isinstance(item, (RepoDependency, AbstractDependency))
|
||||
]
|
||||
|
||||
cmd = " ".join(sys.argv)
|
||||
|
||||
@@ -18,7 +18,13 @@ def _update_import_on_remote(stage, remote, jobs):
|
||||
|
||||
|
||||
def update_import(
|
||||
stage, rev=None, to_remote=False, remote=None, no_download=None, jobs=None
|
||||
stage,
|
||||
rev=None,
|
||||
to_remote=False,
|
||||
remote=None,
|
||||
no_download=None,
|
||||
jobs=None,
|
||||
force=False,
|
||||
):
|
||||
stage.deps[0].update(rev=rev)
|
||||
|
||||
@@ -30,7 +36,7 @@ def update_import(
|
||||
if to_remote:
|
||||
_update_import_on_remote(stage, remote, jobs)
|
||||
else:
|
||||
stage.reproduce(no_download=no_download, jobs=jobs)
|
||||
stage.reproduce(no_download=no_download, jobs=jobs, force=force)
|
||||
finally:
|
||||
if no_download and changed:
|
||||
# Avoid retaining stale information
|
||||
@@ -55,7 +61,7 @@ def sync_import(
|
||||
else:
|
||||
stage.save_deps()
|
||||
if no_download:
|
||||
if stage.is_repo_import:
|
||||
if stage.is_repo_import or stage.is_db_import:
|
||||
stage.deps[0].update()
|
||||
else:
|
||||
stage.deps[0].download(
|
||||
|
||||
+4
-2
@@ -77,12 +77,14 @@ def fill_stage_outputs(stage, **kwargs):
|
||||
)
|
||||
|
||||
|
||||
def fill_stage_dependencies(stage, deps=None, erepo=None, params=None, fs_config=None):
|
||||
def fill_stage_dependencies(
|
||||
stage, deps=None, erepo=None, params=None, fs_config=None, db=None
|
||||
):
|
||||
from dvc.dependency import loads_from, loads_params
|
||||
|
||||
assert not stage.deps
|
||||
stage.deps = []
|
||||
stage.deps += loads_from(stage, deps or [], erepo=erepo, fs_config=fs_config)
|
||||
stage.deps += loads_from(stage, deps or [], erepo=erepo, fs_config=fs_config, db=db)
|
||||
stage.deps += loads_params(stage, params or [])
|
||||
|
||||
|
||||
|
||||
+252
@@ -0,0 +1,252 @@
|
||||
import os
|
||||
from contextlib import contextmanager
|
||||
from importlib.util import find_spec
|
||||
from typing import (
|
||||
TYPE_CHECKING,
|
||||
List,
|
||||
Optional,
|
||||
Sequence,
|
||||
Union,
|
||||
)
|
||||
|
||||
from funcy import cut_prefix, identity
|
||||
|
||||
from dvc.exceptions import DvcException
|
||||
from dvc.log import logger
|
||||
|
||||
from . import packaging
|
||||
|
||||
if TYPE_CHECKING:
|
||||
from agate import Table
|
||||
from dbt.config.profile import Profile
|
||||
from dbt.contracts.results import RunResult
|
||||
from rich.status import Status
|
||||
|
||||
logger = logger.getChild(__name__)
|
||||
|
||||
|
||||
class DbtInternalError(DvcException):
|
||||
pass
|
||||
|
||||
|
||||
def _check_dbt(action: Optional[str]):
|
||||
if not (find_spec("dbt") and find_spec("dbt.cli")):
|
||||
action = f" {action}" if action else ""
|
||||
raise DvcException(f"Could not run{action}. dbt-core is not installed")
|
||||
packaging.check_required_version(pkg="dbt-core")
|
||||
|
||||
|
||||
@contextmanager
|
||||
def check_dbt(action: Optional[str]):
|
||||
_check_dbt(action)
|
||||
yield
|
||||
|
||||
|
||||
def _ref(
|
||||
name: str,
|
||||
package: Optional[str] = None,
|
||||
version: Optional[int] = None,
|
||||
) -> str:
|
||||
parts: List[str] = []
|
||||
if package:
|
||||
parts.append(repr(package))
|
||||
|
||||
parts.append(repr(name))
|
||||
if version:
|
||||
parts.append(f"{version=}")
|
||||
|
||||
inner = ",".join(parts)
|
||||
return "{{ ref(" + inner + ") }}"
|
||||
|
||||
|
||||
def _kw_to_cmd_args(**kwargs: Union[None, bool, str, int]) -> List[str]:
|
||||
args: List[str] = []
|
||||
for key, value in kwargs.items():
|
||||
key = key.replace("_", "-")
|
||||
if value is None:
|
||||
continue # skip creating a flag in this case
|
||||
if value is True:
|
||||
args.append(f"--{key}")
|
||||
elif value is False:
|
||||
args.append(f"--no-{key}")
|
||||
else:
|
||||
args.extend([f"--{key}", str(value)])
|
||||
return args
|
||||
|
||||
|
||||
def _dbt_invoke(*posargs: str, quiet: bool = True, **kw: Union[None, bool, str, int]):
|
||||
from dbt.cli.main import dbtRunner
|
||||
|
||||
args = _kw_to_cmd_args(quiet=quiet or None) # global options
|
||||
args.extend([*posargs, *_kw_to_cmd_args(**kw)])
|
||||
|
||||
runner = dbtRunner()
|
||||
result = runner.invoke(args)
|
||||
if result.success:
|
||||
return result.result
|
||||
raise DbtInternalError(f"failed to run dbt {posargs[0]}") from result.exception
|
||||
|
||||
|
||||
def _dbt_show(
|
||||
inline: Optional[str] = None,
|
||||
limit: int = -1,
|
||||
profile: Optional[str] = None,
|
||||
target: Optional[str] = None,
|
||||
) -> "Table":
|
||||
from dbt.contracts.results import RunExecutionResult
|
||||
|
||||
result = _dbt_invoke(
|
||||
"show",
|
||||
inline=inline,
|
||||
limit=limit,
|
||||
profile=profile,
|
||||
target=target,
|
||||
)
|
||||
assert isinstance(result, RunExecutionResult)
|
||||
|
||||
run_results: Sequence["RunResult"] = result.results
|
||||
run_result, *_ = run_results
|
||||
assert run_result.agate_table is not None
|
||||
return run_result.agate_table
|
||||
|
||||
|
||||
@check_dbt("model")
|
||||
def get_model(
|
||||
name: str,
|
||||
package: Optional[str] = None,
|
||||
version: Optional[int] = None,
|
||||
profile: Optional[str] = None,
|
||||
target: Optional[str] = None,
|
||||
) -> "Table":
|
||||
model = _ref(name, package, version=version)
|
||||
q = f"select * from {model}" # noqa: S608
|
||||
return _dbt_show(
|
||||
inline=q,
|
||||
profile=profile,
|
||||
target=target,
|
||||
)
|
||||
|
||||
|
||||
def _profiles_dir(project_dir: Optional[str] = None) -> str:
|
||||
from dbt.cli.resolvers import default_profiles_dir
|
||||
|
||||
if profiles_dir := os.getenv("DBT_PROFILES_DIR"):
|
||||
return profiles_dir
|
||||
if project_dir and os.path.isfile(os.path.join(project_dir, "profiles.yml")):
|
||||
return project_dir
|
||||
return os.fspath(default_profiles_dir())
|
||||
|
||||
|
||||
@contextmanager
|
||||
def _global_dbt_flags(
|
||||
profiles_dir: str,
|
||||
project_dir: str,
|
||||
target: Optional[str] = None,
|
||||
):
|
||||
from argparse import Namespace
|
||||
|
||||
from dbt import flags
|
||||
|
||||
prev = flags.get_flags()
|
||||
try:
|
||||
args = Namespace(
|
||||
use_colors=True,
|
||||
project_dir=project_dir,
|
||||
profiles_dir=profiles_dir,
|
||||
target=target,
|
||||
)
|
||||
flags.set_from_args(args, None)
|
||||
yield flags.get_flags()
|
||||
finally:
|
||||
flags.set_flags(prev)
|
||||
|
||||
|
||||
def _get_profile_or(
|
||||
project_dir: Optional[str], profile: Optional[str], target: Optional[str]
|
||||
) -> "Profile":
|
||||
from dbt.config.profile import Profile
|
||||
from dbt.config.renderer import ProfileRenderer
|
||||
from dbt.config.runtime import load_profile
|
||||
|
||||
if project_dir and os.path.isfile(os.path.join(project_dir, "dbt_project.yml")):
|
||||
return load_profile(
|
||||
project_dir, {}, profile_name_override=profile, target_override=target
|
||||
)
|
||||
|
||||
if not profile:
|
||||
raise DvcException("No profile specified to query from.")
|
||||
|
||||
renderer = ProfileRenderer({})
|
||||
return Profile.render(renderer, profile, target_override=target)
|
||||
|
||||
|
||||
@contextmanager
|
||||
def _handle_profile_parsing_error():
|
||||
from dbt.exceptions import DbtRuntimeError
|
||||
|
||||
try:
|
||||
yield
|
||||
except DbtRuntimeError as e:
|
||||
cause = e.__cause__ is not None and e.__cause__.__context__
|
||||
if isinstance(cause, ModuleNotFoundError) and (
|
||||
adapter := cut_prefix(cause.name, "dbt.adapters.")
|
||||
):
|
||||
# DbtRuntimeError is very noisy, so send it to debug
|
||||
logger.debug("", exc_info=True)
|
||||
raise DvcException(f"dbt-{adapter} dependency is missing") from cause
|
||||
raise DvcException("failed to read connection profiles") from e
|
||||
|
||||
|
||||
@contextmanager
|
||||
def _suppress_status(status: Optional["Status"]):
|
||||
if status:
|
||||
status.stop()
|
||||
|
||||
yield
|
||||
if status:
|
||||
status.start()
|
||||
|
||||
|
||||
@check_dbt("query")
|
||||
def execute_sql(
|
||||
sql: str,
|
||||
profiles_dir: str,
|
||||
project_dir: Optional[str],
|
||||
profile: Optional[str],
|
||||
target: Optional[str] = None,
|
||||
status: Optional["Status"] = None,
|
||||
) -> "Table":
|
||||
from dbt.adapters import factory as adapters_factory
|
||||
from dbt.adapters.sql import SQLAdapter
|
||||
|
||||
flags = _global_dbt_flags(profiles_dir, os.getcwd(), target=target)
|
||||
update_status = status.update if status else identity
|
||||
|
||||
with flags, adapters_factory.adapter_management():
|
||||
# likely invalid connection profile or no adapter
|
||||
with _handle_profile_parsing_error(), _suppress_status(status):
|
||||
profile_obj = _get_profile_or(project_dir, profile, target)
|
||||
|
||||
adapters_factory.register_adapter(profile_obj) # type: ignore[arg-type]
|
||||
adapter = adapters_factory.get_adapter(profile_obj) # type: ignore[arg-type]
|
||||
|
||||
assert isinstance(adapter, SQLAdapter)
|
||||
with adapter.connection_named("debug"):
|
||||
update_status("Testing Connection")
|
||||
try:
|
||||
adapter.debug_query()
|
||||
except Exception as exc:
|
||||
if status:
|
||||
status.stop()
|
||||
logger.exception(
|
||||
"dvc was unable to connect to the specified database. "
|
||||
"Please check your database credentials and try again.",
|
||||
exc_info=False,
|
||||
)
|
||||
raise DvcException("The database returned the following error") from exc
|
||||
|
||||
with adapter.connection_named("execute"):
|
||||
update_status("Executing query")
|
||||
exec_resp = adapter.execute(sql, fetch=True)
|
||||
_, table = exec_resp
|
||||
return table
|
||||
@@ -0,0 +1,32 @@
|
||||
import logging
|
||||
|
||||
from funcy import once_per_args
|
||||
|
||||
from dvc.log import logger
|
||||
|
||||
logger = logger.getChild(__name__)
|
||||
|
||||
|
||||
@once_per_args
|
||||
def check_required_version(pkg: str, dist: str = "dvc", log_level=logging.WARNING):
|
||||
from importlib import metadata
|
||||
|
||||
from packaging.requirements import InvalidRequirement, Requirement
|
||||
|
||||
try:
|
||||
reqs = {
|
||||
r.name: r.specifier for r in map(Requirement, metadata.requires(dist) or [])
|
||||
}
|
||||
version = metadata.version(pkg)
|
||||
except (metadata.PackageNotFoundError, InvalidRequirement):
|
||||
return
|
||||
|
||||
specifier = reqs.get(pkg)
|
||||
if specifier and version and version not in specifier:
|
||||
logger.log(
|
||||
log_level,
|
||||
"%s%s is required, but you have %r installed which is incompatible.",
|
||||
pkg,
|
||||
specifier,
|
||||
version,
|
||||
)
|
||||
+3
-1
@@ -71,7 +71,8 @@ dependencies = [
|
||||
[project.optional-dependencies]
|
||||
all = ["dvc[azure,gdrive,gs,hdfs,oss,s3,ssh,webdav,webhdfs]"]
|
||||
azure = ["dvc-azure>=2.23.0"]
|
||||
dev = ["dvc[azure,gdrive,gs,hdfs,lint,oss,s3,ssh,tests,webdav,webhdfs]"]
|
||||
db = ["dbt-core>=1.5"]
|
||||
dev = ["dvc[azure,gdrive,gs,hdfs,lint,oss,s3,ssh,tests,webdav,webhdfs,db]"]
|
||||
gdrive = ["dvc-gdrive==2.20"]
|
||||
gs = ["dvc-gs==2.22.1"]
|
||||
hdfs = ["dvc-hdfs==2.19"]
|
||||
@@ -207,6 +208,7 @@ warn_unused_configs = true
|
||||
[[tool.mypy.overrides]]
|
||||
ignore_missing_imports = true
|
||||
module = [
|
||||
"agate.*",
|
||||
"celery.*",
|
||||
"configobj.*",
|
||||
"dpath.*",
|
||||
|
||||
@@ -69,7 +69,7 @@ def test_stage_update(dvc, mocker):
|
||||
is_repo_import.return_value = True
|
||||
with dvc.lock:
|
||||
stage.update()
|
||||
reproduce.assert_called_once_with(no_download=None, jobs=None)
|
||||
reproduce.assert_called_once_with(no_download=None, jobs=None, force=False)
|
||||
|
||||
is_repo_import.return_value = False
|
||||
with pytest.raises(StageUpdateError):
|
||||
|
||||
Reference in New Issue
Block a user